AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene053099

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene053099.t1 MTR_6g004180 98.545 275 4 0 1 275 1 275 0.0 538
MS.gene053099.t1 MTR_6g004180 98.545 275 4 0 1 275 34 308 0.0 537
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene053099.t1 AT1G09760 78.298 235 50 1 1 235 1 234 1.07e-129 368

Find 52 sgRNAs with CRISPR-Local

Find 228 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGACAATGAGATTGTTAAAT+TGG 0.143524 6.2:-183755 MS.gene053099:CDS
AGAGCAAATTATTGCTATTA+AGG 0.211984 6.2:-182692 MS.gene053099:intron
TTACAAAGAAAGTGAATTAT+AGG 0.225797 6.2:-183432 MS.gene053099:CDS
ATCCAACTCGCGCTCTTTAA+TGG 0.228091 6.2:+184069 None:intergenic
CAAATCATACCTCCAATATT+AGG 0.247606 6.2:+183664 None:intergenic
GCTGAAATCCCTCCGAGTTT+TGG 0.276825 6.2:-183392 MS.gene053099:CDS
ACTAGAATTAATCCTAATAT+TGG 0.297232 6.2:-183676 MS.gene053099:CDS
ATATCTGTAATCGAAAATTT+AGG 0.313621 6.2:-184031 MS.gene053099:CDS
TGTGTATCTTTAGATTCATC+AGG 0.370931 6.2:+181004 None:intergenic
CACTACTCATTAACAACAAC+AGG 0.386369 6.2:-183702 MS.gene053099:CDS
GACTCACTGCTGACCTGATC+TGG 0.386465 6.2:-184114 MS.gene053099:CDS
GTACCCAATCGGTTAAGATT+TGG 0.397742 6.2:+183724 None:intergenic
CAATTTAACAATCTCATTGT+CGG 0.412694 6.2:+183756 None:intergenic
ATAAATCTACTGTGTCAAAT+TGG 0.424527 6.2:+183779 None:intergenic
GAAACATCTGGAGTTTCAAC+AGG 0.431038 6.2:+182763 None:intergenic
AGACTAAGGAACTTCAGCTT+TGG 0.434357 6.2:+183469 None:intergenic
TTAATAGCAATAATTTGCTC+TGG 0.437146 6.2:+182694 None:intergenic
TCCGTAGCTTCTGAAACATC+TGG 0.448794 6.2:+182751 None:intergenic
TTACCAAATCTTAACCGATT+GGG 0.454175 6.2:-183727 MS.gene053099:CDS
TGATTCTACTGCAATGGAAC+AGG 0.456679 6.2:-180966 MS.gene053099:intron
TGTTAACAGGCACTGAAGTC+TGG 0.458610 6.2:-181103 MS.gene053099:intron
AGAACTAGTGTGTGTAAATT+CGG 0.472213 6.2:+183544 None:intergenic
CTTACCAAATCTTAACCGAT+TGG 0.476759 6.2:-183728 MS.gene053099:CDS
CACTAGTTCTCACAAACAAC+AGG 0.490673 6.2:-183531 MS.gene053099:CDS
GGAGTAGGAGGAATCACTTT+GGG 0.492669 6.2:+182715 None:intergenic
TTAATGGTATTGAAGAAATG+AGG 0.495834 6.2:+184085 None:intergenic
AGAGGTCGCTAGACTTGAAA+AGG 0.499783 6.2:-181385 MS.gene053099:intron
CTTTCTTGAAGTCCAAAACT+CGG 0.500459 6.2:+183380 None:intergenic
GCAATAATTTGCTCTGGAGT+AGG 0.520654 6.2:+182700 None:intergenic
AGAATTAATCCTAATATTGG+AGG 0.520985 6.2:-183673 MS.gene053099:intron
TCCAGATGTTTCAGAAGCTA+CGG 0.537922 6.2:-182752 MS.gene053099:CDS
CTTGAAGTCCAAAACTCGGA+GGG 0.545316 6.2:+183384 None:intergenic
TAAGGAACTTCAGCTTTGGA+AGG 0.548753 6.2:+183473 None:intergenic
TAATGAGTAGTGTACCCAAT+CGG 0.554266 6.2:+183713 None:intergenic
TGGAGTAGGAGGAATCACTT+TGG 0.558536 6.2:+182714 None:intergenic
ATAATTTGCTCTGGAGTAGG+AGG 0.562316 6.2:+182703 None:intergenic
CTTCAAGAAAGTGAAAGATA+AGG 0.562596 6.2:-183368 MS.gene053099:intron
TAATACTGATTCTACTGCAA+TGG 0.563664 6.2:-180972 MS.gene053099:CDS
TATTGTTGTCAAGAAGACTA+AGG 0.567496 6.2:+183455 None:intergenic
TACCATTAAAGAGCGCGAGT+TGG 0.572232 6.2:-184071 MS.gene053099:CDS
CTCGGAGGGATTTCAGCTTG+TGG 0.583753 6.2:+183398 None:intergenic
TCTGGAGTTTCAACAGGCGC+TGG 0.587258 6.2:+182769 None:intergenic
TAGTTCACAGACTCTTGAAG+AGG 0.588107 6.2:-181403 MS.gene053099:CDS
CTAGTGTGTGTAAATTCGGT+AGG 0.599258 6.2:+183548 None:intergenic
AGCTTTGGAAGGGATGTCAA+AGG 0.601882 6.2:+183484 None:intergenic
AAGAGTCTGTGAACTAACAA+TGG 0.608620 6.2:+181410 None:intergenic
AAGGAACTTCAGCTTTGGAA+GGG 0.613647 6.2:+183474 None:intergenic
CGAAAATTTAGGTGCCACAG+AGG 0.647646 6.2:-184020 MS.gene053099:intron
TCTTGAAGTCCAAAACTCGG+AGG 0.658139 6.2:+183383 None:intergenic
AGATGTTTCAGAAGCTACGG+AGG 0.681835 6.2:-182749 MS.gene053099:CDS
GATAATATTACATACCTCTG+TGG 0.697109 6.2:+184006 None:intergenic
GAGCGCGAGTTGGATCTGAG+AGG 0.748692 6.2:-184061 MS.gene053099:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAAAAAAACGAAAA+TGG - chr6.2:181726-181745 MS.gene053099:intron 10.0%
!! AAAAAAAAAAAATAGTTACA+AGG + chr6.2:180675-180694 None:intergenic 10.0%
!! AGAATTAAAAATAGAATAAT+AGG + chr6.2:182449-182468 None:intergenic 10.0%
!!! CTATTTTTTTTTTTTTTTGA+AGG - chr6.2:180680-180699 MS.gene053099:intron 10.0%
!! AATAGTAATAAAATAATGGT+TGG + chr6.2:183880-183899 None:intergenic 15.0%
!! AGAGAATAGTAATAAAATAA+TGG + chr6.2:183884-183903 None:intergenic 15.0%
!! ATAGTAATAAAATAATGGTT+GGG + chr6.2:183879-183898 None:intergenic 15.0%
!! CAATAAAGAATTAATCAAAT+GGG + chr6.2:182820-182839 None:intergenic 15.0%
!! GTAATATATAAGAAATCTAT+AGG + chr6.2:183485-183504 None:intergenic 15.0%
!! TAAATTCATTATCAGTTTAA+TGG + chr6.2:182591-182610 None:intergenic 15.0%
!!! TTTGATATTTTCTTTAACTA+AGG - chr6.2:183079-183098 MS.gene053099:intron 15.0%
!!! TTTTCTTAAAATTATGTTTG+TGG - chr6.2:181655-181674 MS.gene053099:intron 15.0%
!! AAAAAAAAAAACGAAAATGG+TGG - chr6.2:181729-181748 MS.gene053099:intron 20.0%
!! AACCAAAGAAAAGATAAATA+TGG + chr6.2:181324-181343 None:intergenic 20.0%
!! ACAAGTATAATTACATATCA+TGG + chr6.2:183775-183794 None:intergenic 20.0%
!! ACATAGTTATATACTATGTA+TGG + chr6.2:183023-183042 None:intergenic 20.0%
!! ACCAAAGAAAAGATAAATAT+GGG + chr6.2:181323-181342 None:intergenic 20.0%
!! ACTAGAATTAATCCTAATAT+TGG - chr6.2:180969-180988 MS.gene053099:CDS 20.0%
!! AGTTAAAGAAAATATCAAAC+AGG + chr6.2:183078-183097 None:intergenic 20.0%
!! ATATCTGTAATCGAAAATTT+AGG - chr6.2:180614-180633 MS.gene053099:intron 20.0%
!! ATTAGATAATCATTCATTTC+TGG - chr6.2:183298-183317 MS.gene053099:intron 20.0%
!! CAAACAAAAATGCATAAAAA+AGG + chr6.2:182042-182061 None:intergenic 20.0%
!! CAAATTCATTATCAGTTTAA+TGG + chr6.2:182659-182678 None:intergenic 20.0%
!! CCAATAAAGAATTAATCAAA+TGG + chr6.2:182821-182840 None:intergenic 20.0%
!! CCATTTGATTAATTCTTTAT+TGG - chr6.2:182818-182837 MS.gene053099:CDS 20.0%
!! CCTATAATTACAGTTAATTA+AGG - chr6.2:183907-183926 MS.gene053099:intron 20.0%
!! CCTTAATTAACTGTAATTAT+AGG + chr6.2:183910-183929 None:intergenic 20.0%
!! TGCATAATTTGAAAATGTTT+GGG - chr6.2:181620-181639 MS.gene053099:intron 20.0%
!! TTACAAAGAAAGTGAATTAT+AGG - chr6.2:181213-181232 MS.gene053099:intron 20.0%
!! TTATAATTATCTGCATTTGA+GGG - chr6.2:182714-182733 MS.gene053099:CDS 20.0%
!! TTGATTAATTCTTTATTGGT+TGG - chr6.2:182822-182841 MS.gene053099:CDS 20.0%
!! TTGTAAAATGAATATAACTG+TGG - chr6.2:182486-182505 MS.gene053099:intron 20.0%
!! TTTATAATTATCTGCATTTG+AGG - chr6.2:182713-182732 MS.gene053099:CDS 20.0%
!!! CATTAAACTGATAATGAATT+TGG - chr6.2:182589-182608 MS.gene053099:intron 20.0%
!!! TCAGTTAAATAATTTTGACA+GGG - chr6.2:180770-180789 MS.gene053099:intron 20.0%
!!! TTCAGTTAAATAATTTTGAC+AGG - chr6.2:180769-180788 MS.gene053099:intron 20.0%
! AATAGAATAATAGGTACTTC+AGG + chr6.2:182440-182459 None:intergenic 25.0%
! AATTCATGAACATATCAAGT+AGG + chr6.2:180815-180834 None:intergenic 25.0%
! AGAATTAATCCTAATATTGG+AGG - chr6.2:180972-180991 MS.gene053099:CDS 25.0%
! AGTATAATTACATATCATGG+AGG + chr6.2:183772-183791 None:intergenic 25.0%
! ATAAATCTACTGTGTCAAAT+TGG + chr6.2:180869-180888 None:intergenic 25.0%
! ATAGCATAATTCCAACTTAT+AGG + chr6.2:182769-182788 None:intergenic 25.0%
! CAATTGTGTATGAATTGTTT+AGG - chr6.2:184028-184047 MS.gene053099:CDS 25.0%
! CAATTTAACAATCTCATTGT+CGG + chr6.2:180892-180911 None:intergenic 25.0%
! CTGCATAATTTGAAAATGTT+TGG - chr6.2:181619-181638 MS.gene053099:intron 25.0%
! GATACATTATTACTAACATG+AGG + chr6.2:184091-184110 None:intergenic 25.0%
! TAACTCATTATCCTATAAGT+TGG - chr6.2:182755-182774 MS.gene053099:CDS 25.0%
! TAATCTGGATTATAGCAAAA+TGG - chr6.2:183110-183129 MS.gene053099:intron 25.0%
! TATACTTGTTCAGAACTAAT+TGG - chr6.2:183786-183805 MS.gene053099:intron 25.0%
! TATGTATGGCTTACTATAAT+AGG + chr6.2:183009-183028 None:intergenic 25.0%
! TTGGAATTATGCTATAAGAT+GGG - chr6.2:182774-182793 MS.gene053099:CDS 25.0%
!! AACTGATAATGAATTTAGTC+AGG - chr6.2:182594-182613 MS.gene053099:intron 25.0%
!! ACCCATATTTATCTTTTCTT+TGG - chr6.2:181319-181338 MS.gene053099:intron 25.0%
!! AGAGCAAATTATTGCTATTA+AGG - chr6.2:181953-181972 MS.gene053099:intron 25.0%
!! GAAAAACTTGTTTGAATCAA+AGG - chr6.2:181827-181846 MS.gene053099:intron 25.0%
!! TGACATATCATCAGTTATTT+TGG + chr6.2:183507-183526 None:intergenic 25.0%
!! TTAATGGTATTGAAGAAATG+AGG + chr6.2:180563-180582 None:intergenic 25.0%
!!! TTAATAGCAATAATTTGCTC+TGG + chr6.2:181954-181973 None:intergenic 25.0%
!!! TTTTGCTATAATCCAGATTA+AGG + chr6.2:183110-183129 None:intergenic 25.0%
AACTATAAAACACATCGCAA+GGG - chr6.2:182621-182640 MS.gene053099:intron 30.0%
AAGAAACATGTAAAACCACA+GGG + chr6.2:183201-183220 None:intergenic 30.0%
ACTATATCTTGTGATAGTAC+AGG - chr6.2:182350-182369 MS.gene053099:intron 30.0%
AGAAAGTGAAAGATAAGGTA+AGG - chr6.2:181282-181301 MS.gene053099:intron 30.0%
AGAACTAGTGTGTGTAAATT+CGG + chr6.2:181104-181123 None:intergenic 30.0%
ATCAAAGCTGAGTAAAACAA+GGG + chr6.2:181494-181513 None:intergenic 30.0%
CAAATCATACCTCCAATATT+AGG + chr6.2:180984-181003 None:intergenic 30.0%
CACCATAAGCAATTTGTAAA+CGG - chr6.2:182237-182256 MS.gene053099:intron 30.0%
CATTATAGGTTATCTAACTG+AGG - chr6.2:183976-183995 MS.gene053099:intron 30.0%
CGACAATGAGATTGTTAAAT+TGG - chr6.2:180890-180909 MS.gene053099:intron 30.0%
CTCAGTTAGATAACCTATAA+TGG + chr6.2:183978-183997 None:intergenic 30.0%
CTGATGATATGTCATCTAAT+CGG - chr6.2:183513-183532 MS.gene053099:CDS 30.0%
CTTCAAGAAAGTGAAAGATA+AGG - chr6.2:181277-181296 MS.gene053099:intron 30.0%
GAAAAGATAAATATGGGTAG+TGG + chr6.2:181317-181336 None:intergenic 30.0%
GATAATATTACATACCTCTG+TGG + chr6.2:180642-180661 None:intergenic 30.0%
GCAATAAAAACACCATAGTA+AGG + chr6.2:181071-181090 None:intergenic 30.0%
GTTAGCTATAGCTTTCATAT+TGG + chr6.2:182962-182981 None:intergenic 30.0%
GTTGGAATTATGCTATAAGA+TGG - chr6.2:182773-182792 MS.gene053099:CDS 30.0%
TAACTATAAAACACATCGCA+AGG - chr6.2:182620-182639 MS.gene053099:intron 30.0%
TATCAAAGCTGAGTAAAACA+AGG + chr6.2:181495-181514 None:intergenic 30.0%
TATCCATTGCATTTACAGAA+AGG + chr6.2:182567-182586 None:intergenic 30.0%
TATGGCTTACTATAATAGGA+AGG + chr6.2:183005-183024 None:intergenic 30.0%
TATTGTTGTCAAGAAGACTA+AGG + chr6.2:181193-181212 None:intergenic 30.0%
TGATGATATGTCATCTAATC+GGG - chr6.2:183514-183533 MS.gene053099:CDS 30.0%
TGTCAATGAAAAACAAGATG+TGG - chr6.2:183616-183635 MS.gene053099:intron 30.0%
TGTGTATCTTTAGATTCATC+AGG + chr6.2:183644-183663 None:intergenic 30.0%
TTACCAAATCTTAACCGATT+GGG - chr6.2:180918-180937 MS.gene053099:intron 30.0%
TTACTATAATAGGAAGGTTC+CGG + chr6.2:182999-183018 None:intergenic 30.0%
TTCATTCTGAATTGAACACA+AGG + chr6.2:182000-182019 None:intergenic 30.0%
! AACTGATAATGAATTTGGTC+AGG - chr6.2:182662-182681 MS.gene053099:intron 30.0%
! AGCTTTCATATTGGTTAGAT+TGG + chr6.2:182953-182972 None:intergenic 30.0%
! GAATTTGAGTTCCTTTGTAA+TGG - chr6.2:180830-180849 MS.gene053099:intron 30.0%
! TCAAAAAAGAAGTGTGATGA+AGG + chr6.2:183829-183848 None:intergenic 30.0%
! TTACCTCTTACTAGTCTAAT+GGG - chr6.2:183396-183415 MS.gene053099:CDS 30.0%
! TTTACCTCTTACTAGTCTAA+TGG - chr6.2:183395-183414 MS.gene053099:CDS 30.0%
! TTTCATTGCATTCTTTTTGC+AGG - chr6.2:184116-184135 MS.gene053099:CDS 30.0%
!! TAATACTGATTCTACTGCAA+TGG - chr6.2:183673-183692 MS.gene053099:intron 30.0%
!! TAGTCACTAGTGTTGTTTAA+TGG - chr6.2:182181-182200 MS.gene053099:intron 30.0%
!!! AGCATTTTAAAACGTACCAT+TGG - chr6.2:181385-181404 MS.gene053099:intron 30.0%
AAAATAATGGTTGGGTGTGT+TGG + chr6.2:183871-183890 None:intergenic 35.0%
AAATAATGGTTGGGTGTGTT+GGG + chr6.2:183870-183889 None:intergenic 35.0%
AAGAGTCTGTGAACTAACAA+TGG + chr6.2:183238-183257 None:intergenic 35.0%
AATATCAGTGTCCGAACAAA+AGG - chr6.2:182409-182428 MS.gene053099:intron 35.0%
ACTAAGGAATCACCTTAATC+TGG - chr6.2:183095-183114 MS.gene053099:intron 35.0%
AGGGAAATGAGATCCATTAT+AGG - chr6.2:183962-183981 MS.gene053099:intron 35.0%
ATTTGAGAGAAAAGTGAGAG+TGG - chr6.2:182862-182881 MS.gene053099:intron 35.0%
CACTACTCATTAACAACAAC+AGG - chr6.2:180943-180962 MS.gene053099:intron 35.0%
CAGCACATATACGATGATAT+AGG - chr6.2:182139-182158 MS.gene053099:intron 35.0%
CATAAGCAATTTGTAAACGG+AGG - chr6.2:182240-182259 MS.gene053099:intron 35.0%
CGTTTACAAATTGCTTATGG+TGG + chr6.2:182239-182258 None:intergenic 35.0%
CTCCGTTTACAAATTGCTTA+TGG + chr6.2:182242-182261 None:intergenic 35.0%
CTTACCAAATCTTAACCGAT+TGG - chr6.2:180917-180936 MS.gene053099:intron 35.0%
CTTTCTTGAAGTCCAAAACT+CGG + chr6.2:181268-181287 None:intergenic 35.0%
GAAGAAACATGTAAAACCAC+AGG + chr6.2:183202-183221 None:intergenic 35.0%
GGTTTGACACAAATGAGATA+TGG + chr6.2:182384-182403 None:intergenic 35.0%
GTTCCTTTCTGTAAATGCAA+TGG - chr6.2:182561-182580 MS.gene053099:intron 35.0%
TAATCGGGTTTGATGTTAAC+AGG - chr6.2:183529-183548 MS.gene053099:CDS 35.0%
TAATGAGTAGTGTACCCAAT+CGG + chr6.2:180935-180954 None:intergenic 35.0%
TAATTATCTGCATTTGAGGG+TGG - chr6.2:182717-182736 MS.gene053099:CDS 35.0%
TACAAATTGCTTATGGTGGT+TGG + chr6.2:182235-182254 None:intergenic 35.0%
TACATATCATGGAGGAATGA+TGG + chr6.2:183764-183783 None:intergenic 35.0%
TAGCTTAAAAGTTGTAGACG+AGG - chr6.2:182062-182081 MS.gene053099:intron 35.0%
TATTGTTGCCATCTCTTAGA+GGG - chr6.2:183147-183166 MS.gene053099:intron 35.0%
TCATCGTATATGTGCTGTAT+TGG + chr6.2:182136-182155 None:intergenic 35.0%
TGAATTGAACACAAGGTGTA+TGG + chr6.2:181993-182012 None:intergenic 35.0%
TGTGTAACTCTACCTTACTA+TGG - chr6.2:181056-181075 MS.gene053099:CDS 35.0%
TTCGGACACTGATATTTGAT+AGG + chr6.2:182405-182424 None:intergenic 35.0%
! ATGCTGAAGTTATGGGTTAA+AGG + chr6.2:182109-182128 None:intergenic 35.0%
! GTGATGAAGGCACAAATTAT+AGG + chr6.2:183816-183835 None:intergenic 35.0%
!! TCACTAGTGTTGTTTAATGG+AGG - chr6.2:182184-182203 MS.gene053099:intron 35.0%
!!! TTTTAAGATCTGCAGGAAGT+TGG + chr6.2:183568-183587 None:intergenic 35.0%
AAGCTATAGCTAACAGCAGT+AGG - chr6.2:182968-182987 MS.gene053099:intron 40.0%
AATGGATCTCATTTCCCTCA+AGG + chr6.2:183960-183979 None:intergenic 40.0%
ACAACAGCTAGAAGCAAGAT+GGG + chr6.2:181025-181044 None:intergenic 40.0%
ACACATCAAGACTAACTGGA+CGG + chr6.2:182543-182562 None:intergenic 40.0%
ACTACCACTGTTATCAATGG+TGG + chr6.2:182300-182319 None:intergenic 40.0%
ACTATTTGTGAGTTACCCTG+TGG - chr6.2:183183-183202 MS.gene053099:intron 40.0%
AGAAAAGCTTGAGCAACACA+AGG + chr6.2:183720-183739 None:intergenic 40.0%
AGACTAAGGAACTTCAGCTT+TGG + chr6.2:181179-181198 None:intergenic 40.0%
AGCTATAGCTAACAGCAGTA+GGG - chr6.2:182969-182988 MS.gene053099:intron 40.0%
AGGAACACATCAAGACTAAC+TGG + chr6.2:182547-182566 None:intergenic 40.0%
AGTTATATGCACGCAAGATC+TGG + chr6.2:181541-181560 None:intergenic 40.0%
ATCCTACCTATTCTCATCCT+TGG - chr6.2:183934-183953 MS.gene053099:intron 40.0%
ATTGTTGCCATCTCTTAGAG+GGG - chr6.2:183148-183167 MS.gene053099:intron 40.0%
CTAGTGTGTGTAAATTCGGT+AGG + chr6.2:181100-181119 None:intergenic 40.0%
CTATTGTTGCCATCTCTTAG+AGG - chr6.2:183146-183165 MS.gene053099:intron 40.0%
CTGCAAGGAATCCATTACAA+AGG + chr6.2:180844-180863 None:intergenic 40.0%
CTGCATATAATCGTAGACGA+TGG - chr6.2:181442-181461 MS.gene053099:intron 40.0%
GAAGTACAGATGAAGAGGAT+GGG + chr6.2:181787-181806 None:intergenic 40.0%
GCAGTAAAATATCCACAACC+TGG + chr6.2:181426-181445 None:intergenic 40.0%
GTACCCAATCGGTTAAGATT+TGG + chr6.2:180924-180943 None:intergenic 40.0%
GTGACTACCACTGTTATCAA+TGG + chr6.2:182303-182322 None:intergenic 40.0%
TAACAGTGGTAGTCACCTTA+AGG - chr6.2:182307-182326 MS.gene053099:intron 40.0%
TACAACAGCTAGAAGCAAGA+TGG + chr6.2:181026-181045 None:intergenic 40.0%
TAGTTCACAGACTCTTGAAG+AGG - chr6.2:183242-183261 MS.gene053099:intron 40.0%
TCCAGATGTTTCAGAAGCTA+CGG - chr6.2:181893-181912 MS.gene053099:intron 40.0%
TCTCCCATTAGACTAGTAAG+AGG + chr6.2:183402-183421 None:intergenic 40.0%
TCTTCATCTGTACTTCCTGT+AGG - chr6.2:181791-181810 MS.gene053099:intron 40.0%
TGATTCTACTGCAATGGAAC+AGG - chr6.2:183679-183698 MS.gene053099:CDS 40.0%
TGGACACATGCTGAAGTTAT+GGG + chr6.2:182116-182135 None:intergenic 40.0%
TTGGACACATGCTGAAGTTA+TGG + chr6.2:182117-182136 None:intergenic 40.0%
! AATGAGGACTTTTCCAGATC+AGG + chr6.2:180547-180566 None:intergenic 40.0%
! CACTAGTTCTCACAAACAAC+AGG - chr6.2:181114-181133 MS.gene053099:intron 40.0%
! GAAACATCTGGAGTTTCAAC+AGG + chr6.2:181885-181904 None:intergenic 40.0%
! TACAGGAAGTACAGATGAAG+AGG + chr6.2:181792-181811 None:intergenic 40.0%
! TGTTGCTCAAGCTTTTCTTG+TGG - chr6.2:183722-183741 MS.gene053099:CDS 40.0%
! TGTTGTTTAATGGAGGCCAT+GGG - chr6.2:182191-182210 MS.gene053099:intron 40.0%
!! AAGGAACTTCAGCTTTGGAA+GGG + chr6.2:181174-181193 None:intergenic 40.0%
!! ATAATTTGCTCTGGAGTAGG+AGG + chr6.2:181945-181964 None:intergenic 40.0%
!! CTTTGTAATGGATTCCTTGC+AGG - chr6.2:180842-180861 MS.gene053099:intron 40.0%
!! GCAATAATTTGCTCTGGAGT+AGG + chr6.2:181948-181967 None:intergenic 40.0%
!! TAAGGAACTTCAGCTTTGGA+AGG + chr6.2:181175-181194 None:intergenic 40.0%
!!! GCCTTAGTCTTTGTTTTACG+CGG - chr6.2:181586-181605 MS.gene053099:intron 40.0%
!!! GTCAAGCTTTTAAGATCTGC+AGG + chr6.2:183575-183594 None:intergenic 40.0%
AGAGGTCGCTAGACTTGAAA+AGG - chr6.2:183260-183279 MS.gene053099:intron 45.0%
AGATGTTTCAGAAGCTACGG+AGG - chr6.2:181896-181915 MS.gene053099:intron 45.0%
AGGTAGAGTTACACAGCTTG+TGG + chr6.2:181051-181070 None:intergenic 45.0%
ATCCAACTCGCGCTCTTTAA+TGG + chr6.2:180579-180598 None:intergenic 45.0%
CAACAGCTAGAAGCAAGATG+GGG + chr6.2:181024-181043 None:intergenic 45.0%
CTTGAAGTCCAAAACTCGGA+GGG + chr6.2:181264-181283 None:intergenic 45.0%
GCCGCGTAAAACAAAGACTA+AGG + chr6.2:181590-181609 None:intergenic 45.0%
GGAGTAGGAGGAATCACTTT+GGG + chr6.2:181933-181952 None:intergenic 45.0%
GGGTATGCTTTCTGTTTCAC+TGG - chr6.2:182794-182813 MS.gene053099:CDS 45.0%
GTTGTTTAATGGAGGCCATG+GGG - chr6.2:182192-182211 MS.gene053099:intron 45.0%
TACATGTTTCTTCTGCGTGC+AGG - chr6.2:183209-183228 MS.gene053099:intron 45.0%
TCAAGGCCAAGGATGAGAAT+AGG + chr6.2:183943-183962 None:intergenic 45.0%
TCGCTTCTAAACGTTCCTAC+AGG + chr6.2:181809-181828 None:intergenic 45.0%
TCTTGAAGTCCAAAACTCGG+AGG + chr6.2:181265-181284 None:intergenic 45.0%
TGGAGTAGGAGGAATCACTT+TGG + chr6.2:181934-181953 None:intergenic 45.0%
TGTGTCAAATTGGTCCTGCA+AGG + chr6.2:180859-180878 None:intergenic 45.0%
TTGTTGCCATCTCTTAGAGG+GGG - chr6.2:183149-183168 MS.gene053099:intron 45.0%
! CCACTGTTATCAATGGTGGA+TGG + chr6.2:182296-182315 None:intergenic 45.0%
! CCATCCACCATTGATAACAG+TGG - chr6.2:182293-182312 MS.gene053099:intron 45.0%
! CGAAAATTTAGGTGCCACAG+AGG - chr6.2:180625-180644 MS.gene053099:intron 45.0%
! GGAAGTACAGATGAAGAGGA+TGG + chr6.2:181788-181807 None:intergenic 45.0%
! GTCTTGCTATCAAGAGCCAA+TGG + chr6.2:181404-181423 None:intergenic 45.0%
! TACCATTAAAGAGCGCGAGT+TGG - chr6.2:180574-180593 MS.gene053099:intron 45.0%
! TTCAGGCCAAGCCTTTTGTT+CGG + chr6.2:182423-182442 None:intergenic 45.0%
! TTGATAGCAAGACCAGGTTG+TGG - chr6.2:181411-181430 MS.gene053099:CDS 45.0%
!! AGCTTTGGAAGGGATGTCAA+AGG + chr6.2:181164-181183 None:intergenic 45.0%
!! ATTCTCATCCTTGGCCTTGA+GGG - chr6.2:183943-183962 MS.gene053099:intron 45.0%
!! CTGTTATCAATGGTGGATGG+TGG + chr6.2:182293-182312 None:intergenic 45.0%
!! GTGTTGTTTAATGGAGGCCA+TGG - chr6.2:182190-182209 MS.gene053099:intron 45.0%
!! TATTCTCATCCTTGGCCTTG+AGG - chr6.2:183942-183961 MS.gene053099:intron 45.0%
!! TCCGTAGCTTCTGAAACATC+TGG + chr6.2:181897-181916 None:intergenic 45.0%
!! TGTTAACAGGCACTGAAGTC+TGG - chr6.2:183542-183561 MS.gene053099:CDS 45.0%
CACCTTAAGGTGCAACAGCA+AGG - chr6.2:182320-182339 MS.gene053099:intron 50.0%
CAGTGTCCGAACAAAAGGCT+TGG - chr6.2:182414-182433 MS.gene053099:intron 50.0%
GGCCAAGGATGAGAATAGGT+AGG + chr6.2:183939-183958 None:intergenic 50.0%
GGTTGGAGAAAATTCCGCCA+TGG + chr6.2:182218-182237 None:intergenic 50.0%
TAATGGTTGGGTGTGTTGGG+CGG + chr6.2:183867-183886 None:intergenic 50.0%
TCTCATTTCCCTCAAGGCCA+AGG + chr6.2:183954-183973 None:intergenic 50.0%
! CATGTACCCCCTCTAAGAGA+TGG + chr6.2:183158-183177 None:intergenic 50.0%
! GCTGAAATCCCTCCGAGTTT+TGG - chr6.2:181253-181272 MS.gene053099:intron 50.0%
! TGGCTCTTGATAGCAAGACC+AGG - chr6.2:181405-181424 MS.gene053099:CDS 50.0%
!! CTCCTTGCTGTTGCACCTTA+AGG + chr6.2:182325-182344 None:intergenic 50.0%
AAAATTCCGCCATGGCCCCA+TGG + chr6.2:182210-182229 None:intergenic 55.0%
AACATGCCATTGCACCGCCA+TGG + chr6.2:182270-182289 None:intergenic 55.0%
CTAACAGCAGTAGGGCGTAC+CGG - chr6.2:182977-182996 MS.gene053099:intron 55.0%
CTCGGAGGGATTTCAGCTTG+TGG + chr6.2:181250-181269 None:intergenic 55.0%
GACTCACTGCTGACCTGATC+TGG - chr6.2:180531-180550 MS.gene053099:intron 55.0%
TTGTAAACGGAGGCCTGCCA+TGG - chr6.2:182250-182269 MS.gene053099:intron 55.0%
! TCTGGAGTTTCAACAGGCGC+TGG + chr6.2:181879-181898 None:intergenic 55.0%
TAAACGGAGGCCTGCCATGG+CGG - chr6.2:182253-182272 MS.gene053099:intron 60.0%
TAATGGAGGCCATGGGGCCA+TGG - chr6.2:182198-182217 MS.gene053099:intron 60.0%
! GAGCGCGAGTTGGATCTGAG+AGG - chr6.2:180584-180603 MS.gene053099:intron 60.0%
TGCCATTGCACCGCCATGGC+AGG + chr6.2:182266-182285 None:intergenic 65.0%
GGCCTGCCATGGCGGTGCAA+TGG - chr6.2:182261-182280 MS.gene053099:intron 70.0%
TGGAGGCCATGGGGCCATGG+CGG - chr6.2:182201-182220 MS.gene053099:intron 70.0%


Chromosome Type Strat End Strand Name
chr6.2 gene 180524 184143 180524 ID=MS.gene053099
chr6.2 mRNA 180524 184143 180524 ID=MS.gene053099.t1;Parent=MS.gene053099
chr6.2 exon 184021 184143 184021 ID=MS.gene053099.t1.exon1;Parent=MS.gene053099.t1
chr6.2 CDS 184021 184143 184021 ID=cds.MS.gene053099.t1;Parent=MS.gene053099.t1
chr6.2 exon 183674 183803 183674 ID=MS.gene053099.t1.exon2;Parent=MS.gene053099.t1
chr6.2 CDS 183674 183803 183674 ID=cds.MS.gene053099.t1;Parent=MS.gene053099.t1
chr6.2 exon 183369 183574 183369 ID=MS.gene053099.t1.exon3;Parent=MS.gene053099.t1
chr6.2 CDS 183369 183574 183369 ID=cds.MS.gene053099.t1;Parent=MS.gene053099.t1
chr6.2 exon 182693 182854 182693 ID=MS.gene053099.t1.exon4;Parent=MS.gene053099.t1
chr6.2 CDS 182693 182854 182693 ID=cds.MS.gene053099.t1;Parent=MS.gene053099.t1
chr6.2 exon 181386 181436 181386 ID=MS.gene053099.t1.exon5;Parent=MS.gene053099.t1
chr6.2 CDS 181386 181436 181386 ID=cds.MS.gene053099.t1;Parent=MS.gene053099.t1
chr6.2 exon 180967 181116 180967 ID=MS.gene053099.t1.exon6;Parent=MS.gene053099.t1
chr6.2 CDS 180967 181116 180967 ID=cds.MS.gene053099.t1;Parent=MS.gene053099.t1
chr6.2 exon 180524 180529 180524 ID=MS.gene053099.t1.exon7;Parent=MS.gene053099.t1
chr6.2 CDS 180524 180529 180524 ID=cds.MS.gene053099.t1;Parent=MS.gene053099.t1
Gene Sequence

>MS.gene053099

ATGGTGAGACTCACTGCTGACCTGATCTGGAAAAGTCCTCATTTCTTCAATACCATTAAAGAGCGCGAGTTGGATCTGAGAGGCAACAAAATATCTGTAATCGAAAATTTAGGTGCCACAGAGGTATGTAATATTATCTTCTTGCATTCCTTGTAACTATTTTTTTTTTTTTTTGAAGGATTGTAACTACTTTTGTTGTTGAGCTTTCTTTTGATTTGAAAGAATCTATTATTATGACTCTATGCTTCAGTTAAATAATTTTGACAGGGTTCATCTTGTCTTGATGAGCCTACTTGATATGTTCATGAATTTGAGTTCCTTTGTAATGGATTCCTTGCAGGACCAATTTGACACAGTAGATTTATCCGACAATGAGATTGTTAAATTGGAAAACTTACCAAATCTTAACCGATTGGGTACACTACTCATTAACAACAACAGGATTACTAGAATTAATCCTAATATTGGAGGTATGATTTGAAACTTTAACTGTATTACCCCATCTTGCTTCTAGCTGTTGTAAGCCACAAGCTGTGTAACTCTACCTTACTATGGTGTTTTTATTGCAGAGTTCCTACCGAATTTACACACACTAGTTCTCACAAACAACAGGATTGTAAACTTAGTAGAAATTGATCCTTTGACATCCCTTCCAAAGCTGAAGTTCCTTAGTCTTCTTGACAACAATATTACAAAGAAAGTGAATTATAGGCTTTATGTTATCCACAAGCTGAAATCCCTCCGAGTTTTGGACTTCAAGAAAGTGAAAGATAAGGTAAGGATTTCTTTACCACTACCCATATTTATCTTTTCTTTGGTTTGTTGTTTGAAATATGAAACTCTGATTTGAATGAATATATCAGCATTTTAAAACGTACCATTGGCTCTTGATAGCAAGACCAGGTTGTGGATATTTTACTGCATATAATCGTAGACGATGGACTGATTTTTTACTAGTCTGTCTTAGCCCTTGTTTTACTCAGCTTTGATAGACTAAATGATTTGAAATGAAAACCAGATCTTGCGTGCATATAACTGTAGACGACAAACTGATTTTTTACTGCCTTAGTCTTTGTTTTACGCGGCTTTGATACTCTGCATAATTTGAAAATGTTTGGGTGCAGATATTTTTTTTCTTAAAATTATGTTTGTGGATGCAAGAAGAGTTTGTTTCATTACATTATTAGAGATTACAATGCAAAAAAAAAAAAAAAAACGAAAATGGTGGTATATTATTGAATTTTTTCTTGTTATCAATTACCCATCCTCTTCATCTGTACTTCCTGTAGGAACGTTTAGAAGCGAAAAACTTGTTTGAATCAAAGGAAGCTATAGAAGAAGCTCAAAACACACCAGCGCCTGTTGAAACTCCAGATGTTTCAGAAGCTACGGAGGAACAACAGACACCCAAAGTGATTCCTCCTACTCCAGAGCAAATTATTGCTATTAAGGTACAGTTACAAGTGCCATACACCTTGTGTTCAATTCAGAATGAACAAATAATCTGTGTATTTTCCTTTTTTATGCATTTTTGTTTGTAGCTTAAAAGTTGTAGACGAGGAGATTACTTGCTTGCTTTAATCCTTTAACCCATAACTTCAGCATGTGTCCAATACAGCACATATACGATGATATAGGAAATTTTTGCACAATAAACTAGTCACTAGTGTTGTTTAATGGAGGCCATGGGGCCATGGCGGAATTTTCTCCAACCACCATAAGCAATTTGTAAACGGAGGCCTGCCATGGCGGTGCAATGGCATGTTCCACCATCCACCATTGATAACAGTGGTAGTCACCTTAAGGTGCAACAGCAAGGAGTCTGAACTATATCTTGTGATAGTACAGGCAAACAAGCCATATCTCATTTGTGTCAAACCTATCAAATATCAGTGTCCGAACAAAAGGCTTGGCCTGAAGTACCTATTATTCTATTTTTAATTCTTGCTACTTCAATTCTTGTTGTAAAATGAATATAACTGTGGTTATTCATCAATCATTAAATGAAAAAAAAATCCGTCCAGTTAGTCTTGATGTGTTCCTTTCTGTAAATGCAATGGATATCCATTAAACTGATAATGAATTTAGTCAGGTCTTAACTATAAAACACATCGCAAGGGCTTTAGAATTATCCATTAAACTGATAATGAATTTGGTCAGGTCTCAACTATAAAACACATTGCAAGAGCTTTATAATTATCTGCATTTGAGGGTGGCTTATTTTGATAGCGTAACTCATTATCCTATAAGTTGGAATTATGCTATAAGATGGGTATGCTTTCTGTTTCACTGGCCCATTTGATTAATTCTTTATTGGTTGGCAGTGAAAAATTTTAACATTTGAGAGAAAAGTGAGAGTGGAGTAAGATAGATAAAACTTATGAGAATCTGAAATTGAAGTTTTATTTTCTCTTTTTAGTCAAGTACCAATCTAACCAATATGAAAGCTATAGCTAACAGCAGTAGGGCGTACCGGAACCTTCCTATTATAGTAAGCCATACATAGTATATAACTATGTGTAAGCAGATTCTTTTGAAATTATATTATGTGCCTGTTTGATATTTTCTTTAACTAAGGAATCACCTTAATCTGGATTATAGCAAAATGGCTATCTTACTGAACTATTGTTGCCATCTCTTAGAGGGGGTACATGAAACAACTATTTGTGAGTTACCCTGTGGTTTTACATGTTTCTTCTGCGTGCAGGCTGCCATTGTTAGTTCACAGACTCTTGAAGAGGTCGCTAGACTTGAAAAGGTACTTGCTTTTCTAAATTAGATAATCATTCATTTCTGGTATCTTAAGTATTGTTTTTGTTTTACTCATGCATAACATAATGTTGAAATTACTTTACATTTCATTTATGACTATTTACCTCTTACTAGTCTAATGGGAGATTCATGCTACTAGTTTCTGAGCTTTTTTATGACATTTGCTTGACTATTTTATTGTATCTTCCTATAGATTTCTTATATATTACCAAAATAACTGATGATATGTCATCTAATCGGGTTTGATGTTAACAGGCACTGAAGTCTGGCCAACTTCCTGCAGATCTTAAAAGCTTGACTGATAATATGATGATTGATAATGTCAATGAAAAACAAGATGTGGTTCCTGATGAATCTAAAGATACACAAGAGCAGAGTAATACTGATTCTACTGCAATGGAACAGGTATGTGTCTACTTTTCCTTGTGTTGCTCAAGCTTTTCTTGTGGATCTGTGATAAATTAACCATCATTCCTCCATGATATGTAATTATACTTGTTCAGAACTAATTGGACTGCCTATAATTTGTGCCTTCATCACACTTCTTTTTTGAACATGTTAGCAGCTGCCGCCCAACACACCCAACCATTATTTTATTACTATTCTCTTAGCCTATAATTACAGTTAATTAAGGATAGATCCTACCTATTCTCATCCTTGGCCTTGAGGGAAATGAGATCCATTATAGGTTATCTAACTGAGGAGAATTAAATGCAACAAGAACTGATCATACAATTGTGTATGAATTGTTTAGGATCATATATGCTCTACTTGTTTGTGTTCTTGTCTTAACCTCATGTTAGTAATAATGTATCTGATGTTTCATTGCATTCTTTTTGCAGGACTAG
Protein sequence

>MS.gene053099.t1

MVRLTADLIWKSPHFFNTIKERELDLRGNKISVIENLGATEDQFDTVDLSDNEIVKLENLPNLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRIVNLVEIDPLTSLPKLKFLSLLDNNITKKVNYRLYVIHKLKSLRVLDFKKVKDKERLEAKNLFESKEAIEEAQNTPAPVETPDVSEATEEQQTPKVIPPTPEQIIAIKAAIVSSQTLEEVARLEKALKSGQLPADLKSLTDNMMIDNVNEKQDVVPDESKDTQEQSNTDSTAMEQD