Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76037.t1 | XP_003618732.1 | 86.7 | 278 | 37 | 0 | 1 | 278 | 1 | 278 | 7.60E-95 | 357.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76037.t1 | Q9M886 | 48.7 | 277 | 125 | 3 | 1 | 274 | 1 | 263 | 2.5e-62 | 240.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76037.t1 | G7KMR0 | 86.7 | 278 | 37 | 0 | 1 | 278 | 1 | 278 | 5.5e-95 | 357.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene76037.t1 | TF | LOB |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene053108 | MS.gene76037 | 0.823038 | 1.72E-53 | -1.69E-46 |
| MS.gene053421 | MS.gene76037 | 0.833205 | 6.10E-56 | -1.69E-46 |
| MS.gene056618 | MS.gene76037 | 0.805922 | 1.06E-49 | -1.69E-46 |
| MS.gene056688 | MS.gene76037 | 0.800692 | 1.28E-48 | -1.69E-46 |
| MS.gene057356 | MS.gene76037 | 0.804922 | 1.71E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76037.t1 | MTR_6g018270 | 92.446 | 278 | 21 | 0 | 1 | 278 | 1 | 278 | 0.0 | 511 |
| MS.gene76037.t1 | MTR_7g007010 | 58.710 | 310 | 87 | 8 | 1 | 278 | 1 | 301 | 6.05e-104 | 305 |
| MS.gene76037.t1 | MTR_6g453130 | 48.261 | 230 | 89 | 9 | 1 | 208 | 1 | 222 | 4.34e-64 | 201 |
| MS.gene76037.t1 | MTR_1g110840 | 50.761 | 197 | 74 | 8 | 1 | 182 | 1 | 189 | 4.95e-59 | 188 |
| MS.gene76037.t1 | MTR_6g054150 | 45.217 | 230 | 96 | 9 | 1 | 208 | 1 | 222 | 1.59e-56 | 181 |
| MS.gene76037.t1 | MTR_6g054080 | 46.018 | 226 | 92 | 10 | 1 | 204 | 1 | 218 | 2.82e-55 | 178 |
| MS.gene76037.t1 | MTR_4g095600 | 39.331 | 239 | 123 | 4 | 3 | 241 | 1 | 217 | 1.86e-53 | 174 |
| MS.gene76037.t1 | MTR_5g015880 | 54.348 | 138 | 53 | 1 | 3 | 140 | 1 | 128 | 9.70e-51 | 167 |
| MS.gene76037.t1 | MTR_1g106420 | 45.625 | 160 | 78 | 1 | 3 | 162 | 1 | 151 | 1.21e-45 | 152 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76037.t1 | AT3G02550 | 53.069 | 277 | 113 | 5 | 1 | 274 | 1 | 263 | 5.77e-89 | 265 |
| MS.gene76037.t1 | AT1G67100 | 74.342 | 152 | 32 | 2 | 1 | 150 | 1 | 147 | 1.77e-78 | 238 |
| MS.gene76037.t1 | AT1G68510 | 49.027 | 257 | 91 | 5 | 1 | 241 | 1 | 233 | 1.57e-72 | 223 |
| MS.gene76037.t1 | AT3G49940 | 64.545 | 110 | 39 | 0 | 3 | 112 | 1 | 110 | 1.04e-50 | 167 |
| MS.gene76037.t1 | AT4G37540 | 64.865 | 111 | 39 | 0 | 3 | 113 | 1 | 111 | 1.06e-50 | 167 |
| MS.gene76037.t1 | AT5G67420 | 61.818 | 110 | 42 | 0 | 3 | 112 | 1 | 110 | 4.59e-50 | 166 |
| MS.gene76037.t1 | AT5G67420 | 61.818 | 110 | 42 | 0 | 3 | 112 | 1 | 110 | 4.59e-50 | 166 |
Find 94 sgRNAs with CRISPR-Local
Find 149 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGCGACGATTCATGGCTTT+TGG | 0.201879 | 6.3:+14006104 | None:intergenic |
| AGGATCGTGAACCCTATTTA+TGG | 0.235139 | 6.3:-14006411 | MS.gene76037:CDS |
| AGTCCCACTGACCCATAAAT+AGG | 0.237033 | 6.3:+14006399 | None:intergenic |
| TTTGGACCGGTCCACTTCTT+TGG | 0.257677 | 6.3:+14006122 | None:intergenic |
| CCAACTTCTTTGTTTGGCTT+TGG | 0.265093 | 6.3:+14006168 | None:intergenic |
| CCGGACCCAACTTCTTTGTT+TGG | 0.284722 | 6.3:+14006162 | None:intergenic |
| CTCATCAACCTCATCAATTC+TGG | 0.302253 | 6.3:-14007269 | MS.gene76037:CDS |
| ACTCCGACTCATCATGAAAA+AGG | 0.304175 | 6.3:+14006031 | None:intergenic |
| GTCCACTTCTTTGGCCGAAT+TGG | 0.320719 | 6.3:+14006131 | None:intergenic |
| AAAGAAGTTGGGTCCGGTTC+AGG | 0.324263 | 6.3:-14006156 | MS.gene76037:CDS |
| GCTGGCTCAGCGACGATTCA+TGG | 0.348974 | 6.3:+14006097 | None:intergenic |
| TTTGTTTGGCTTTGGCTTCA+CGG | 0.357595 | 6.3:+14006176 | None:intergenic |
| GGAGCTTGGGCTTGACCTTT+CGG | 0.372258 | 6.3:-14005827 | MS.gene76037:CDS |
| CTTCCTCCAAGGTGGAGCTT+GGG | 0.372498 | 6.3:-14005840 | MS.gene76037:CDS |
| TTGTAACATAAGACCATGTT+TGG | 0.384670 | 6.3:-14007363 | MS.gene76037:CDS |
| GAAGAGGAAAATTGTGTTGA+AGG | 0.384836 | 6.3:-14005872 | MS.gene76037:CDS |
| GGCCGAATTGGACCCTGAAC+CGG | 0.393613 | 6.3:+14006143 | None:intergenic |
| GCTTCCTCCAAGGTGGAGCT+TGG | 0.394968 | 6.3:-14005841 | MS.gene76037:CDS |
| TGACACGTGGCGTATGTCAT+AGG | 0.396608 | 6.3:+14006257 | None:intergenic |
| GTTGGCTTGGAGCTGAGGCT+TGG | 0.400046 | 6.3:-14005937 | MS.gene76037:CDS |
| CCTAACCTGCTTAGTCTCCT+TGG | 0.425511 | 6.3:+14006221 | None:intergenic |
| TGAGAGGGCCCCACCATTCA+AGG | 0.428342 | 6.3:-14006280 | MS.gene76037:CDS |
| CCAAGGAGACTAAGCAGGTT+AGG | 0.434548 | 6.3:-14006221 | MS.gene76037:CDS |
| GTCCCACTGACCCATAAATA+GGG | 0.436381 | 6.3:+14006400 | None:intergenic |
| TGTGAGTGATGGGGTTGGCT+TGG | 0.437221 | 6.3:-14005950 | MS.gene76037:CDS |
| GTAGCATTAGCTTGTGATTG+AGG | 0.440070 | 6.3:+14007326 | None:intergenic |
| GGATCGTGAACCCTATTTAT+GGG | 0.457021 | 6.3:-14006410 | MS.gene76037:CDS |
| CTTTCTTTAGCTTCTGACTC+AGG | 0.457661 | 6.3:+14006003 | None:intergenic |
| CCAAAGCCAAACAAAGAAGT+TGG | 0.467795 | 6.3:-14006168 | MS.gene76037:CDS |
| GTCCGGTTCAGGGTCCAATT+CGG | 0.473428 | 6.3:-14006145 | MS.gene76037:CDS |
| CATTGCTCTATGAGGCTTGT+GGG | 0.474610 | 6.3:-14006434 | MS.gene76037:CDS |
| ATGGGGTTGGCTTGGAGCTG+AGG | 0.476741 | 6.3:-14005942 | MS.gene76037:CDS |
| AAGAAGTTGGGTCCGGTTCA+GGG | 0.484358 | 6.3:-14006155 | MS.gene76037:CDS |
| CTGAGGAAGGTGTGAGTGAT+GGG | 0.489690 | 6.3:-14005960 | MS.gene76037:CDS |
| CCACTTTCACTATCTTTACC+CGG | 0.498112 | 6.3:+14006075 | None:intergenic |
| TTTCACTATCTTTACCCGGC+TGG | 0.506084 | 6.3:+14006079 | None:intergenic |
| TGAATCGTCGCTGAGCCAGC+CGG | 0.506395 | 6.3:-14006094 | MS.gene76037:CDS |
| AAAATGAGAATGAGTTGTAA+TGG | 0.507722 | 6.3:-14007419 | MS.gene76037:CDS |
| AAGCCCAAGCTCCACCTTGG+AGG | 0.510346 | 6.3:+14005837 | None:intergenic |
| CTGAGTCAGAAGCTAAAGAA+AGG | 0.510485 | 6.3:-14006002 | MS.gene76037:CDS |
| TGTCATAGGCCTTGAATGGT+GGG | 0.511499 | 6.3:+14006271 | None:intergenic |
| CAAAGCCAAACAAAGAAGTT+GGG | 0.512918 | 6.3:-14006167 | MS.gene76037:CDS |
| GGTTCTGAAAATCTTCGTCC+TGG | 0.520270 | 6.3:-14007248 | MS.gene76037:intron |
| GCTTCACGGCTCGTCTGAAG+CGG | 0.521373 | 6.3:+14006190 | None:intergenic |
| ATGTCATAGGCCTTGAATGG+TGG | 0.523094 | 6.3:+14006270 | None:intergenic |
| CCGGGTAAAGATAGTGAAAG+TGG | 0.523543 | 6.3:-14006075 | MS.gene76037:CDS |
| TGAGTCAGAAGCTAAAGAAA+GGG | 0.529238 | 6.3:-14006001 | MS.gene76037:CDS |
| GAATCGTCGCTGAGCCAGCC+GGG | 0.529354 | 6.3:-14006093 | MS.gene76037:CDS |
| CTTCACGGCTCGTCTGAAGC+GGG | 0.531988 | 6.3:+14006191 | None:intergenic |
| GCCGATCACTCCGATAGCTT+CGG | 0.532895 | 6.3:-14006316 | MS.gene76037:CDS |
| GTCAAGCCCAAGCTCCACCT+TGG | 0.535158 | 6.3:+14005834 | None:intergenic |
| GTCCAATTCGGCCAAAGAAG+TGG | 0.535373 | 6.3:-14006133 | MS.gene76037:CDS |
| GAAGGTGTGAGTGATGGGGT+TGG | 0.537576 | 6.3:-14005955 | MS.gene76037:CDS |
| TCATTGCTCTATGAGGCTTG+TGG | 0.539310 | 6.3:-14006435 | MS.gene76037:CDS |
| TCAGCAGTCTCCGAAGCTAT+CGG | 0.539997 | 6.3:+14006306 | None:intergenic |
| CCAAACAAAGAAGTTGGGTC+CGG | 0.550063 | 6.3:-14006162 | MS.gene76037:CDS |
| CACTTGATCCATTCCAAACA+TGG | 0.555522 | 6.3:+14007350 | None:intergenic |
| AAAGAAAGGGGTCGAGCTGA+GGG | 0.557055 | 6.3:-14005988 | MS.gene76037:CDS |
| ACATAAGACCATGTTTGGAA+TGG | 0.560066 | 6.3:-14007358 | MS.gene76037:CDS |
| CACTCACACCTTCCTCAGCT+CGG | 0.561092 | 6.3:+14005965 | None:intergenic |
| GCTGAGGCTTGGTATCAAAC+CGG | 0.561804 | 6.3:-14005926 | MS.gene76037:CDS |
| GCACCTCTGTCAAGCCGCTG+TGG | 0.565125 | 6.3:-14006358 | MS.gene76037:CDS |
| CGGGTAAAGATAGTGAAAGT+GGG | 0.566796 | 6.3:-14006074 | MS.gene76037:CDS |
| GCTGAGGAAGGTGTGAGTGA+TGG | 0.567541 | 6.3:-14005961 | MS.gene76037:CDS |
| TAAAGAAAGGGGTCGAGCTG+AGG | 0.567911 | 6.3:-14005989 | MS.gene76037:CDS |
| GTCATAGGCCTTGAATGGTG+GGG | 0.570001 | 6.3:+14006272 | None:intergenic |
| GCTGAGGGCCGAGCTGAGGA+AGG | 0.571074 | 6.3:-14005973 | MS.gene76037:CDS |
| TCGAGCTGAGGGCCGAGCTG+AGG | 0.573810 | 6.3:-14005977 | MS.gene76037:CDS |
| TCCGAAGCTATCGGAGTGAT+CGG | 0.575927 | 6.3:+14006315 | None:intergenic |
| CGTATGTCATAGGCCTTGAA+TGG | 0.576947 | 6.3:+14006267 | None:intergenic |
| GATCGGCTCGCCTTTCAAAA+CGG | 0.577788 | 6.3:+14006332 | None:intergenic |
| AACCCTATTTATGGGTCAGT+GGG | 0.581115 | 6.3:-14006402 | MS.gene76037:CDS |
| CGGAGACTGCTGAAAATGAG+AGG | 0.581555 | 6.3:-14006296 | MS.gene76037:CDS |
| TGCTCTATGAGGCTTGTGGG+AGG | 0.581729 | 6.3:-14006431 | MS.gene76037:CDS |
| TTTCAGAACCAGAATTGATG+AGG | 0.582737 | 6.3:+14007261 | None:intergenic |
| ATTCGGCCAAAGAAGTGGAC+CGG | 0.592102 | 6.3:-14006128 | MS.gene76037:CDS |
| TAACTCCAAGGAGACTAAGC+AGG | 0.603900 | 6.3:-14006226 | MS.gene76037:CDS |
| GAACCCTATTTATGGGTCAG+TGG | 0.607510 | 6.3:-14006403 | MS.gene76037:CDS |
| GTCAAAAGATGATAACTCCA+AGG | 0.607900 | 6.3:-14006238 | MS.gene76037:CDS |
| CTCAAGCCATTCAAGCCGAA+AGG | 0.609247 | 6.3:+14005812 | None:intergenic |
| ACATGGTTCCCATAAAGAAG+AGG | 0.610391 | 6.3:-14005888 | MS.gene76037:CDS |
| GGTGTCACATGAGGAGTACA+TGG | 0.616138 | 6.3:-14005905 | MS.gene76037:CDS |
| AGACTAAGCAGGTTAGGACT+CGG | 0.616984 | 6.3:-14006215 | MS.gene76037:CDS |
| GGATTGTAGTGCTTCCTCCA+AGG | 0.617775 | 6.3:-14005851 | MS.gene76037:CDS |
| CTTCCACAGCGGCTTGACAG+AGG | 0.620565 | 6.3:+14006355 | None:intergenic |
| GGAGACTGCTGAAAATGAGA+GGG | 0.625900 | 6.3:-14006295 | MS.gene76037:CDS |
| TAGTGAAAGTGGGGTCTCTG+TGG | 0.628045 | 6.3:-14006064 | MS.gene76037:CDS |
| TATCAAACCGGTGTCACATG+AGG | 0.633807 | 6.3:-14005914 | MS.gene76037:CDS |
| ATGTACTCCTCATGTGACAC+CGG | 0.646012 | 6.3:+14005907 | None:intergenic |
| TTGTAGTGCTTCCTCCAAGG+TGG | 0.649686 | 6.3:-14005848 | MS.gene76037:CDS |
| TGAGGAAGGTGTGAGTGATG+GGG | 0.650116 | 6.3:-14005959 | MS.gene76037:CDS |
| GAGTCAGAAGCTAAAGAAAG+GGG | 0.652141 | 6.3:-14006000 | MS.gene76037:CDS |
| GGGTAAAGATAGTGAAAGTG+GGG | 0.688058 | 6.3:-14006073 | MS.gene76037:CDS |
| TTTCAAAACGGCTTCCACAG+CGG | 0.749245 | 6.3:+14006344 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATTTAAAAGAAAATTACA+AGG | + | chr6.3:14006218-14006237 | None:intergenic | 10.0% |
| !!! | AAAAAAAACTAAATTTTTCA+TGG | + | chr6.3:14006477-14006496 | None:intergenic | 10.0% |
| !!! | GTTTTTTTTTTTTTATATCT+TGG | - | chr6.3:14006095-14006114 | MS.gene76037:CDS | 10.0% |
| !! | AACATAAAAATTTAATTACC+AGG | + | chr6.3:14006011-14006030 | None:intergenic | 15.0% |
| !!! | CGTTAATTGTTTTTTATTTT+TGG | - | chr6.3:14006370-14006389 | MS.gene76037:CDS | 15.0% |
| !! | AACTATTAAAGCAGAAAATT+TGG | + | chr6.3:14006283-14006302 | None:intergenic | 20.0% |
| !! | ACTATTAAAGCAGAAAATTT+GGG | + | chr6.3:14006282-14006301 | None:intergenic | 20.0% |
| !! | GAAAAAATTACAACGATTTA+TGG | - | chr6.3:14006548-14006567 | MS.gene76037:intron | 20.0% |
| !! | TAGGAACATATATCTATAAA+AGG | + | chr6.3:14006053-14006072 | None:intergenic | 20.0% |
| !!! | AATTCTTTAGAAATTTGACA+TGG | + | chr6.3:14006701-14006720 | None:intergenic | 20.0% |
| !!! | ATCAACTTTTATTTACCTTT+CGG | + | chr6.3:14006521-14006540 | None:intergenic | 20.0% |
| !!! | GTCAAATTTCTAAAGAATTT+GGG | - | chr6.3:14006702-14006721 | MS.gene76037:intron | 20.0% |
| !!! | GTTTTTTATTTTTGGTACAT+AGG | - | chr6.3:14006378-14006397 | MS.gene76037:CDS | 20.0% |
| !!! | TAAATAAAAGTTGATAAACC+TGG | - | chr6.3:14006526-14006545 | MS.gene76037:intron | 20.0% |
| !!! | TCAAATTTCTAAAGAATTTG+GGG | - | chr6.3:14006703-14006722 | MS.gene76037:intron | 20.0% |
| !!! | TGATTTTTATTTGAATCCTT+AGG | - | chr6.3:14006310-14006329 | MS.gene76037:CDS | 20.0% |
| !!! | TGTCAAATTTCTAAAGAATT+TGG | - | chr6.3:14006701-14006720 | MS.gene76037:intron | 20.0% |
| !!! | TTTCATATTGATTGTGATTT+TGG | - | chr6.3:14006751-14006770 | MS.gene76037:intron | 20.0% |
| !!! | TTTTTTATATCTTGGTATCA+CGG | - | chr6.3:14006103-14006122 | MS.gene76037:CDS | 20.0% |
| ! | AGAAATTTGACATGGAATTA+AGG | + | chr6.3:14006693-14006712 | None:intergenic | 25.0% |
| !! | ACAATTTTCCTCTTCTTTAT+GGG | + | chr6.3:14007361-14007380 | None:intergenic | 25.0% |
| !! | GTTTTTCTTGCTAAGTTTTA+TGG | - | chr6.3:14005936-14005955 | MS.gene76037:CDS | 25.0% |
| !!! | AAATCGTTGTAATTTTTTCC+AGG | + | chr6.3:14006547-14006566 | None:intergenic | 25.0% |
| !!! | GATGTAGAGTTTTAAGAAAA+GGG | - | chr6.3:14005841-14005860 | MS.gene76037:CDS | 25.0% |
| AAAATAACGAGTACAAAACC+TGG | + | chr6.3:14006621-14006640 | None:intergenic | 30.0% | |
| ATATGTTCCTATGATCTATG+TGG | - | chr6.3:14006062-14006081 | MS.gene76037:CDS | 30.0% | |
| CTGGAAAATGAGTAGATAAT+TGG | + | chr6.3:14006602-14006621 | None:intergenic | 30.0% | |
| TATGTTCCTATGATCTATGT+GGG | - | chr6.3:14006063-14006082 | MS.gene76037:CDS | 30.0% | |
| TTGTAACATAAGACCATGTT+TGG | - | chr6.3:14005875-14005894 | MS.gene76037:CDS | 30.0% | |
| ! | CAATTATCTACTCATTTTCC+AGG | - | chr6.3:14006600-14006619 | MS.gene76037:intron | 30.0% |
| ! | CACAATTTTCCTCTTCTTTA+TGG | + | chr6.3:14007362-14007381 | None:intergenic | 30.0% |
| ! | GAATTAAGGTTTGAAATTGC+TGG | + | chr6.3:14006679-14006698 | None:intergenic | 30.0% |
| !! | AACTTTTATTTACCTTTCGG+AGG | + | chr6.3:14006518-14006537 | None:intergenic | 30.0% |
| !! | AATCCTTTTTCATGATGAGT+CGG | - | chr6.3:14007204-14007223 | MS.gene76037:intron | 30.0% |
| !!! | GGATGTAGAGTTTTAAGAAA+AGG | - | chr6.3:14005840-14005859 | MS.gene76037:CDS | 30.0% |
| !!! | TACAAGGTTTTAGATTTGAG+AGG | + | chr6.3:14006202-14006221 | None:intergenic | 30.0% |
| ACATAAGACCATGTTTGGAA+TGG | - | chr6.3:14005880-14005899 | MS.gene76037:CDS | 35.0% | |
| AGCAATGAACGAAAAATAGC+TGG | + | chr6.3:14006791-14006810 | None:intergenic | 35.0% | |
| ATGTTCCTATGATCTATGTG+GGG | - | chr6.3:14006064-14006083 | MS.gene76037:CDS | 35.0% | |
| ATTAACGAATACCCATCACA+TGG | + | chr6.3:14006357-14006376 | None:intergenic | 35.0% | |
| CAAAGCCAAACAAAGAAGTT+GGG | - | chr6.3:14007071-14007090 | MS.gene76037:intron | 35.0% | |
| CACAATCTCAATGTGTATCA+CGG | + | chr6.3:14006176-14006195 | None:intergenic | 35.0% | |
| CGGTGAATTTGTCAGAATTT+CGG | - | chr6.3:14006123-14006142 | MS.gene76037:CDS | 35.0% | |
| GAAGAGGAAAATTGTGTTGA+AGG | - | chr6.3:14007366-14007385 | MS.gene76037:CDS | 35.0% | |
| GTCAAAAGATGATAACTCCA+AGG | - | chr6.3:14007000-14007019 | MS.gene76037:intron | 35.0% | |
| TGAGTCAGAAGCTAAAGAAA+GGG | - | chr6.3:14007237-14007256 | MS.gene76037:intron | 35.0% | |
| TTTCAGAACCAGAATTGATG+AGG | + | chr6.3:14005980-14005999 | None:intergenic | 35.0% | |
| TTTGGTAAGATCCATGTGAT+GGG | - | chr6.3:14006343-14006362 | MS.gene76037:CDS | 35.0% | |
| ! | AGTTATCATCTTTTGACACG+TGG | + | chr6.3:14006997-14007016 | None:intergenic | 35.0% |
| ! | TTTTCGTTCATTGCTCTATG+AGG | - | chr6.3:14006796-14006815 | MS.gene76037:intron | 35.0% |
| AACCCTATTTATGGGTCAGT+GGG | - | chr6.3:14006836-14006855 | MS.gene76037:intron | 40.0% | |
| ACATGGTTCCCATAAAGAAG+AGG | - | chr6.3:14007350-14007369 | MS.gene76037:CDS | 40.0% | |
| ACTCCGACTCATCATGAAAA+AGG | + | chr6.3:14007210-14007229 | None:intergenic | 40.0% | |
| AGGATCGTGAACCCTATTTA+TGG | - | chr6.3:14006827-14006846 | MS.gene76037:intron | 40.0% | |
| CACTTGATCCATTCCAAACA+TGG | + | chr6.3:14005891-14005910 | None:intergenic | 40.0% | |
| CCAAAGCCAAACAAAGAAGT+TGG | - | chr6.3:14007070-14007089 | MS.gene76037:intron | 40.0% | |
| CCACTTTCACTATCTTTACC+CGG | + | chr6.3:14007166-14007185 | None:intergenic | 40.0% | |
| CGGGTAAAGATAGTGAAAGT+GGG | - | chr6.3:14007164-14007183 | MS.gene76037:intron | 40.0% | |
| CTCATCAACCTCATCAATTC+TGG | - | chr6.3:14005969-14005988 | MS.gene76037:CDS | 40.0% | |
| CTGAGTCAGAAGCTAAAGAA+AGG | - | chr6.3:14007236-14007255 | MS.gene76037:intron | 40.0% | |
| GAGTCAGAAGCTAAAGAAAG+GGG | - | chr6.3:14007238-14007257 | MS.gene76037:intron | 40.0% | |
| GGATCGTGAACCCTATTTAT+GGG | - | chr6.3:14006828-14006847 | MS.gene76037:intron | 40.0% | |
| GGATCTTACCAAACTCTCAA+TGG | + | chr6.3:14006336-14006355 | None:intergenic | 40.0% | |
| GGGTAAAGATAGTGAAAGTG+GGG | - | chr6.3:14007165-14007184 | MS.gene76037:intron | 40.0% | |
| GTTTGGTAAGATCCATGTGA+TGG | - | chr6.3:14006342-14006361 | MS.gene76037:CDS | 40.0% | |
| ! | CCAACTTCTTTGTTTGGCTT+TGG | + | chr6.3:14007073-14007092 | None:intergenic | 40.0% |
| ! | CTTTCTTTAGCTTCTGACTC+AGG | + | chr6.3:14007238-14007257 | None:intergenic | 40.0% |
| !! | GTAGCATTAGCTTGTGATTG+AGG | + | chr6.3:14005915-14005934 | None:intergenic | 40.0% |
| !! | TTTGTTTGGCTTTGGCTTCA+CGG | + | chr6.3:14007065-14007084 | None:intergenic | 40.0% |
| ACCAAACTCTCAATGGCCTA+AGG | + | chr6.3:14006329-14006348 | None:intergenic | 45.0% | |
| ACCTTTCGGAGGAGAATCAA+AGG | + | chr6.3:14006507-14006526 | None:intergenic | 45.0% | |
| AGACTAAGCAGGTTAGGACT+CGG | - | chr6.3:14007023-14007042 | MS.gene76037:intron | 45.0% | |
| AGTCCCACTGACCCATAAAT+AGG | + | chr6.3:14006842-14006861 | None:intergenic | 45.0% | |
| ATGTACTCCTCATGTGACAC+CGG | + | chr6.3:14007334-14007353 | None:intergenic | 45.0% | |
| ATGTCATAGGCCTTGAATGG+TGG | + | chr6.3:14006971-14006990 | None:intergenic | 45.0% | |
| CATTGCTCTATGAGGCTTGT+GGG | - | chr6.3:14006804-14006823 | MS.gene76037:intron | 45.0% | |
| CCAAACAAAGAAGTTGGGTC+CGG | - | chr6.3:14007076-14007095 | MS.gene76037:intron | 45.0% | |
| CCGGGTAAAGATAGTGAAAG+TGG | - | chr6.3:14007163-14007182 | MS.gene76037:intron | 45.0% | |
| CCTTTCGGAGGAGAATCAAA+GGG | + | chr6.3:14006506-14006525 | None:intergenic | 45.0% | |
| CGTATGTCATAGGCCTTGAA+TGG | + | chr6.3:14006974-14006993 | None:intergenic | 45.0% | |
| GAACCCTATTTATGGGTCAG+TGG | - | chr6.3:14006835-14006854 | MS.gene76037:intron | 45.0% | |
| GATGTCCCCACATAGATCAT+AGG | + | chr6.3:14006072-14006091 | None:intergenic | 45.0% | |
| GGAGACTGCTGAAAATGAGA+GGG | - | chr6.3:14006943-14006962 | MS.gene76037:intron | 45.0% | |
| GTCCCACTGACCCATAAATA+GGG | + | chr6.3:14006841-14006860 | None:intergenic | 45.0% | |
| TAACTCCAAGGAGACTAAGC+AGG | - | chr6.3:14007012-14007031 | MS.gene76037:intron | 45.0% | |
| TCATTGCTCTATGAGGCTTG+TGG | - | chr6.3:14006803-14006822 | MS.gene76037:intron | 45.0% | |
| TCCTTAGGCCATTGAGAGTT+TGG | - | chr6.3:14006325-14006344 | MS.gene76037:CDS | 45.0% | |
| TGTCATAGGCCTTGAATGGT+GGG | + | chr6.3:14006970-14006989 | None:intergenic | 45.0% | |
| TTTCAAAACGGCTTCCACAG+CGG | + | chr6.3:14006897-14006916 | None:intergenic | 45.0% | |
| TTTCACTATCTTTACCCGGC+TGG | + | chr6.3:14007162-14007181 | None:intergenic | 45.0% | |
| ! | ACGATTCATGGCTTTTGGAC+CGG | + | chr6.3:14007132-14007151 | None:intergenic | 45.0% |
| ! | ATGGGTCAGTGGGACTTTTA+TGG | - | chr6.3:14006846-14006865 | MS.gene76037:intron | 45.0% |
| ! | GACTTTTATGGTCTGGTAGC+TGG | - | chr6.3:14006858-14006877 | MS.gene76037:intron | 45.0% |
| ! | TCAGTGGGACTTTTATGGTC+TGG | - | chr6.3:14006851-14006870 | MS.gene76037:intron | 45.0% |
| !! | GCTAAGTTTTATGGTCGTGC+TGG | - | chr6.3:14005945-14005964 | MS.gene76037:CDS | 45.0% |
| !! | GGTTCTGAAAATCTTCGTCC+TGG | - | chr6.3:14005990-14006009 | MS.gene76037:CDS | 45.0% |
| !! | TATCAAACCGGTGTCACATG+AGG | - | chr6.3:14007324-14007343 | MS.gene76037:CDS | 45.0% |
| AAAGAAAGGGGTCGAGCTGA+GGG | - | chr6.3:14007250-14007269 | MS.gene76037:CDS | 50.0% | |
| AAAGAAGTTGGGTCCGGTTC+AGG | - | chr6.3:14007082-14007101 | MS.gene76037:intron | 50.0% | |
| AAGAAGTTGGGTCCGGTTCA+GGG | - | chr6.3:14007083-14007102 | MS.gene76037:intron | 50.0% | |
| ATTCGGCCAAAGAAGTGGAC+CGG | - | chr6.3:14007110-14007129 | MS.gene76037:intron | 50.0% | |
| CCAAGGAGACTAAGCAGGTT+AGG | - | chr6.3:14007017-14007036 | MS.gene76037:intron | 50.0% | |
| CCCTTTGATTCTCCTCCGAA+AGG | - | chr6.3:14006503-14006522 | MS.gene76037:intron | 50.0% | |
| CCGGACCCAACTTCTTTGTT+TGG | + | chr6.3:14007079-14007098 | None:intergenic | 50.0% | |
| CCTAACCTGCTTAGTCTCCT+TGG | + | chr6.3:14007020-14007039 | None:intergenic | 50.0% | |
| CGGAGACTGCTGAAAATGAG+AGG | - | chr6.3:14006942-14006961 | MS.gene76037:intron | 50.0% | |
| GGATTGTAGTGCTTCCTCCA+AGG | - | chr6.3:14007387-14007406 | MS.gene76037:CDS | 50.0% | |
| GTCATAGGCCTTGAATGGTG+GGG | + | chr6.3:14006969-14006988 | None:intergenic | 50.0% | |
| GTCCAATTCGGCCAAAGAAG+TGG | - | chr6.3:14007105-14007124 | MS.gene76037:intron | 50.0% | |
| GTCCACTTCTTTGGCCGAAT+TGG | + | chr6.3:14007110-14007129 | None:intergenic | 50.0% | |
| TAAAGAAAGGGGTCGAGCTG+AGG | - | chr6.3:14007249-14007268 | MS.gene76037:CDS | 50.0% | |
| TAGTGAAAGTGGGGTCTCTG+TGG | - | chr6.3:14007174-14007193 | MS.gene76037:intron | 50.0% | |
| TCAGCAGTCTCCGAAGCTAT+CGG | + | chr6.3:14006935-14006954 | None:intergenic | 50.0% | |
| TCCGAAGCTATCGGAGTGAT+CGG | + | chr6.3:14006926-14006945 | None:intergenic | 50.0% | |
| TGACACGTGGCGTATGTCAT+AGG | + | chr6.3:14006984-14007003 | None:intergenic | 50.0% | |
| TTGTAGTGCTTCCTCCAAGG+TGG | - | chr6.3:14007390-14007409 | MS.gene76037:CDS | 50.0% | |
| TTTGGACCGGTCCACTTCTT+TGG | + | chr6.3:14007119-14007138 | None:intergenic | 50.0% | |
| ! | CAGCGACGATTCATGGCTTT+TGG | + | chr6.3:14007137-14007156 | None:intergenic | 50.0% |
| ! | CTGAGGAAGGTGTGAGTGAT+GGG | - | chr6.3:14007278-14007297 | MS.gene76037:CDS | 50.0% |
| ! | GCTGAGGCTTGGTATCAAAC+CGG | - | chr6.3:14007312-14007331 | MS.gene76037:CDS | 50.0% |
| ! | GGTGTCACATGAGGAGTACA+TGG | - | chr6.3:14007333-14007352 | MS.gene76037:CDS | 50.0% |
| ! | TGAGGAAGGTGTGAGTGATG+GGG | - | chr6.3:14007279-14007298 | MS.gene76037:CDS | 50.0% |
| !! | GATCGGCTCGCCTTTCAAAA+CGG | + | chr6.3:14006909-14006928 | None:intergenic | 50.0% |
| !! | GCTGTGGAAGCCGTTTTGAA+AGG | - | chr6.3:14006896-14006915 | MS.gene76037:intron | 50.0% |
| CACTCACACCTTCCTCAGCT+CGG | + | chr6.3:14007276-14007295 | None:intergenic | 55.0% | |
| CTTCCTCCAAGGTGGAGCTT+GGG | - | chr6.3:14007398-14007417 | MS.gene76037:CDS | 55.0% | |
| GCCGATCACTCCGATAGCTT+CGG | - | chr6.3:14006922-14006941 | MS.gene76037:intron | 55.0% | |
| GGAGCTTGGGCTTGACCTTT+CGG | - | chr6.3:14007411-14007430 | MS.gene76037:CDS | 55.0% | |
| GTCCGGTTCAGGGTCCAATT+CGG | - | chr6.3:14007093-14007112 | MS.gene76037:intron | 55.0% | |
| TGCTCTATGAGGCTTGTGGG+AGG | - | chr6.3:14006807-14006826 | MS.gene76037:intron | 55.0% | |
| ! | GAAGGTGTGAGTGATGGGGT+TGG | - | chr6.3:14007283-14007302 | MS.gene76037:CDS | 55.0% |
| ! | GCTGAGGAAGGTGTGAGTGA+TGG | - | chr6.3:14007277-14007296 | MS.gene76037:CDS | 55.0% |
| !! | TGTGAGTGATGGGGTTGGCT+TGG | - | chr6.3:14007288-14007307 | MS.gene76037:CDS | 55.0% |
| AAGCCCAAGCTCCACCTTGG+AGG | + | chr6.3:14007404-14007423 | None:intergenic | 60.0% | |
| CTTCCACAGCGGCTTGACAG+AGG | + | chr6.3:14006886-14006905 | None:intergenic | 60.0% | |
| GCTTCACGGCTCGTCTGAAG+CGG | + | chr6.3:14007051-14007070 | None:intergenic | 60.0% | |
| GCTTCCTCCAAGGTGGAGCT+TGG | - | chr6.3:14007397-14007416 | MS.gene76037:CDS | 60.0% | |
| GGCCGAATTGGACCCTGAAC+CGG | + | chr6.3:14007098-14007117 | None:intergenic | 60.0% | |
| GTCAAGCCCAAGCTCCACCT+TGG | + | chr6.3:14007407-14007426 | None:intergenic | 60.0% | |
| TGAATCGTCGCTGAGCCAGC+CGG | - | chr6.3:14007144-14007163 | MS.gene76037:intron | 60.0% | |
| TGAGAGGGCCCCACCATTCA+AGG | - | chr6.3:14006958-14006977 | MS.gene76037:intron | 60.0% | |
| ! | CTTCACGGCTCGTCTGAAGC+GGG | + | chr6.3:14007050-14007069 | None:intergenic | 60.0% |
| ! | GCTGGCTCAGCGACGATTCA+TGG | + | chr6.3:14007144-14007163 | None:intergenic | 60.0% |
| !! | ATGGGGTTGGCTTGGAGCTG+AGG | - | chr6.3:14007296-14007315 | MS.gene76037:CDS | 60.0% |
| !! | GTTGGCTTGGAGCTGAGGCT+TGG | - | chr6.3:14007301-14007320 | MS.gene76037:CDS | 60.0% |
| GAATCGTCGCTGAGCCAGCC+GGG | - | chr6.3:14007145-14007164 | MS.gene76037:intron | 65.0% | |
| GCACCTCTGTCAAGCCGCTG+TGG | - | chr6.3:14006880-14006899 | MS.gene76037:intron | 65.0% | |
| GCTGAGGGCCGAGCTGAGGA+AGG | - | chr6.3:14007265-14007284 | MS.gene76037:CDS | 70.0% | |
| TCGAGCTGAGGGCCGAGCTG+AGG | - | chr6.3:14007261-14007280 | MS.gene76037:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.3 | gene | 14005822 | 14007438 | 14005822 | ID=MS.gene76037 |
| chr6.3 | mRNA | 14005822 | 14007438 | 14005822 | ID=MS.gene76037.t1;Parent=MS.gene76037 |
| chr6.3 | exon | 14007249 | 14007438 | 14007249 | ID=MS.gene76037.t1.exon1;Parent=MS.gene76037.t1 |
| chr6.3 | CDS | 14007249 | 14007438 | 14007249 | ID=cds.MS.gene76037.t1;Parent=MS.gene76037.t1 |
| chr6.3 | exon | 14005822 | 14006468 | 14005822 | ID=MS.gene76037.t1.exon2;Parent=MS.gene76037.t1 |
| chr6.3 | CDS | 14005822 | 14006468 | 14005822 | ID=cds.MS.gene76037.t1;Parent=MS.gene76037.t1 |
| Gene Sequence |
| Protein sequence |
