AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene76079

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene76079.t1 MTR_5g083040 93.075 361 25 0 1 361 1 361 0.0 657
MS.gene76079.t1 MTR_5g074270 40.419 334 190 4 10 340 11 338 1.14e-95 289
MS.gene76079.t1 MTR_2g015080 41.642 341 184 7 12 343 19 353 3.28e-95 288
MS.gene76079.t1 MTR_4g087985 42.593 324 172 4 28 343 32 349 3.51e-95 288
MS.gene76079.t1 MTR_1g025780 39.938 323 187 2 30 352 39 354 1.08e-93 284
MS.gene76079.t1 MTR_3g114120 40.566 318 181 3 31 347 46 356 9.46e-89 271
MS.gene76079.t1 MTR_1g025700 39.940 333 187 4 21 352 44 364 1.83e-87 268
MS.gene76079.t1 MTR_1g025760 38.682 349 201 4 10 352 54 395 4.57e-87 268
MS.gene76079.t1 MTR_1g025720 37.640 356 208 5 10 359 11 358 1.22e-86 266
MS.gene76079.t1 MTR_5g022640 40.346 347 191 7 17 359 32 366 1.35e-86 266
MS.gene76079.t1 MTR_3g114090 39.577 331 191 4 31 359 35 358 2.49e-86 265
MS.gene76079.t1 MTR_5g022630 42.604 338 171 10 17 346 32 354 5.22e-86 265
MS.gene76079.t1 MTR_3g464730 37.394 353 207 5 10 359 10 351 1.24e-84 260
MS.gene76079.t1 MTR_1g025680 35.933 359 217 5 7 359 5 356 7.02e-83 259
MS.gene76079.t1 MTR_5g084750 39.009 323 188 4 28 348 26 341 1.59e-82 255
MS.gene76079.t1 MTR_5g084770 38.390 323 191 4 28 348 24 340 1.86e-82 255
MS.gene76079.t1 MTR_8g075230 37.536 349 199 7 16 359 24 358 1.95e-82 255
MS.gene76079.t1 MTR_1g025910 41.875 320 173 5 37 353 41 350 3.40e-81 253
MS.gene76079.t1 MTR_8g075200 37.920 327 194 4 31 355 40 359 2.45e-78 246
MS.gene76079.t1 MTR_8g014910 37.072 321 192 5 31 348 31 344 8.61e-77 241
MS.gene76079.t1 MTR_8g075220 37.651 332 193 5 31 355 39 363 1.82e-76 240
MS.gene76079.t1 MTR_5g084790 37.092 337 195 5 29 359 29 354 2.49e-75 237
MS.gene76079.t1 MTR_3g082830 36.795 337 196 5 29 359 35 360 4.05e-75 236
MS.gene76079.t1 MTR_2g084585 36.080 352 200 5 7 348 5 341 1.48e-73 232
MS.gene76079.t1 MTR_2g100620 36.810 326 188 6 31 349 30 344 2.57e-73 231
MS.gene76079.t1 MTR_4g056280 35.429 350 203 7 11 348 3 341 1.07e-71 228
MS.gene76079.t1 MTR_4g056160 36.709 316 188 6 30 340 25 333 3.12e-65 211
MS.gene76079.t1 MTR_7g116570 33.333 342 211 6 12 347 14 344 2.12e-59 196
MS.gene76079.t1 MTR_1g069175 33.025 324 198 5 32 347 33 345 1.14e-55 186
MS.gene76079.t1 MTR_7g116510 31.532 333 216 5 26 354 19 343 5.23e-55 184
MS.gene76079.t1 MTR_1g079540 31.875 320 205 5 32 347 31 341 4.46e-54 182
MS.gene76079.t1 MTR_2g033930 33.134 335 208 8 10 339 10 333 2.43e-53 180
MS.gene76079.t1 MTR_8g087890 33.025 324 201 8 29 347 28 340 1.17e-52 178
MS.gene76079.t1 MTR_7g116520 29.261 352 236 5 7 354 9 351 2.29e-52 178
MS.gene76079.t1 MTR_3g024510 32.012 328 197 9 29 346 35 346 4.43e-51 174
MS.gene76079.t1 MTR_3g052490 32.231 363 199 12 7 348 9 345 7.99e-51 174
MS.gene76079.t1 MTR_7g008060 30.994 342 207 7 10 347 14 330 2.09e-50 172
MS.gene76079.t1 MTR_0565s0010 31.073 354 215 10 8 346 2 341 3.77e-50 172
MS.gene76079.t1 MTR_1g079530 31.214 346 217 7 8 347 3 333 4.15e-50 172
MS.gene76079.t1 MTR_7g116500 29.394 330 220 5 22 347 23 343 7.27e-50 171
MS.gene76079.t1 MTR_3g052480 31.638 354 214 10 7 348 10 347 7.49e-50 171
MS.gene76079.t1 MTR_5g009100 31.715 309 200 6 34 339 48 348 2.86e-49 170
MS.gene76079.t1 MTR_6g021530 30.625 320 208 6 34 348 31 341 3.75e-49 169
MS.gene76079.t1 MTR_3g005660 33.127 323 192 8 29 340 33 342 3.83e-49 169
MS.gene76079.t1 MTR_1g024890 29.630 351 234 5 1 347 1 342 7.38e-48 166
MS.gene76079.t1 MTR_4g019880 28.286 350 235 6 10 354 13 351 1.03e-47 166
MS.gene76079.t1 MTR_3g435540 32.166 314 198 8 34 342 25 328 1.99e-47 164
MS.gene76079.t1 MTR_3g098270 31.624 351 219 8 10 351 13 351 2.47e-47 165
MS.gene76079.t1 MTR_5g093090 30.816 331 202 8 30 348 26 341 2.69e-47 164
MS.gene76079.t1 MTR_8g022810 30.145 345 216 10 27 358 36 368 1.88e-46 162
MS.gene76079.t1 MTR_3g005650 31.014 345 215 10 1 340 2 328 9.95e-46 160
MS.gene76079.t1 MTR_4g035353 30.523 344 223 8 4 341 2 335 1.72e-45 159
MS.gene76079.t1 MTR_2g033920 31.361 338 210 11 9 339 16 338 1.85e-45 159
MS.gene76079.t1 MTR_8g074570 31.124 347 214 10 6 341 12 344 2.36e-45 159
MS.gene76079.t1 MTR_3g052580 30.387 362 211 12 4 348 3 340 4.46e-45 159
MS.gene76079.t1 MTR_3g052580 30.387 362 211 12 4 348 2 339 5.68e-45 159
MS.gene76079.t1 MTR_4g108690 30.368 326 200 8 34 348 29 338 1.57e-44 157
MS.gene76079.t1 MTR_8g079050 29.630 351 229 8 1 340 4 347 1.59e-44 157
MS.gene76079.t1 MTR_2g044100 31.884 345 208 11 12 341 17 349 1.81e-44 157
MS.gene76079.t1 MTR_4g122200 33.129 326 194 10 31 346 34 345 2.47e-44 157
MS.gene76079.t1 MTR_5g078210 31.915 329 205 10 25 347 18 333 7.94e-43 152
MS.gene76079.t1 MTR_8g031430 28.116 345 225 9 9 346 14 342 1.64e-42 152
MS.gene76079.t1 MTR_2g017925 30.818 318 194 9 28 340 29 325 4.21e-42 150
MS.gene76079.t1 MTR_2g017875 30.721 319 197 10 27 339 29 329 5.13e-41 147
MS.gene76079.t1 MTR_3g023220 30.408 319 190 11 29 340 30 323 8.25e-41 147
MS.gene76079.t1 MTR_8g031400 28.045 353 223 11 8 346 7 342 8.39e-41 147
MS.gene76079.t1 MTR_8g031420 28.483 323 206 10 32 346 35 340 2.48e-40 146
MS.gene76079.t1 MTR_2g017965 29.775 356 225 12 1 349 1 338 3.46e-39 143
MS.gene76079.t1 MTR_0009s0250 30.178 338 210 10 8 340 9 325 7.60e-39 142
MS.gene76079.t1 MTR_2g017955 29.653 317 201 8 29 340 30 329 9.32e-39 142
MS.gene76079.t1 MTR_8g074560 29.799 349 223 10 3 340 2 339 5.60e-38 140
MS.gene76079.t1 MTR_8g087870 27.463 335 219 9 10 340 7 321 5.71e-38 139
MS.gene76079.t1 MTR_8g022790 28.438 320 202 10 29 341 34 333 1.48e-37 138
MS.gene76079.t1 MTR_8g031390 27.554 323 208 10 32 346 37 341 2.28e-37 138
MS.gene76079.t1 MTR_2g017915 30.218 321 181 10 28 343 29 311 2.31e-37 138
MS.gene76079.t1 MTR_3g021460 28.198 344 219 11 10 348 10 330 5.89e-37 137
MS.gene76079.t1 MTR_2g461580 27.114 343 224 8 10 348 10 330 7.98e-36 134
MS.gene76079.t1 MTR_8g074580 28.840 319 209 5 1 311 11 319 5.57e-35 132
MS.gene76079.t1 MTR_5g093090 30.961 281 167 8 30 298 26 291 1.96e-33 126
MS.gene76079.t1 MTR_5g074210 38.686 137 78 2 204 340 64 194 2.24e-33 124
MS.gene76079.t1 MTR_3g463960 28.065 367 225 13 8 347 13 367 2.68e-33 127
MS.gene76079.t1 MTR_3g463950 28.065 367 225 13 8 347 13 367 2.68e-33 127
MS.gene76079.t1 MTR_3g463970 28.065 367 225 13 8 347 13 367 2.68e-33 127
MS.gene76079.t1 MTR_3g463940 28.065 367 225 13 8 347 13 367 2.68e-33 127
MS.gene76079.t1 MTR_1108s0010 32.110 218 124 6 135 348 3 200 5.29e-33 122
MS.gene76079.t1 MTR_2g033920 30.743 296 182 10 9 297 16 295 7.77e-33 125
MS.gene76079.t1 MTR_3g463930 27.467 375 222 12 8 346 13 373 8.07e-33 126
MS.gene76079.t1 MTR_8g031390 27.857 280 183 8 32 309 37 299 1.11e-31 122
MS.gene76079.t1 MTR_2g015580 26.912 353 237 11 10 348 25 370 1.30e-31 123
MS.gene76079.t1 MTR_5g078210 32.616 279 170 9 25 297 18 284 5.16e-31 120
MS.gene76079.t1 MTR_8g022810 32.432 222 142 6 27 245 36 252 1.31e-30 119
MS.gene76079.t1 MTR_4g036375 35.385 195 117 2 11 199 3 194 4.54e-30 114
MS.gene76079.t1 MTR_1g079590 34.615 208 124 5 6 204 2 206 5.02e-30 114
MS.gene76079.t1 MTR_1g030275 26.966 356 226 13 12 346 19 361 1.43e-29 117
MS.gene76079.t1 MTR_7g104220 28.834 326 196 16 33 348 43 342 1.59e-29 117
MS.gene76079.t1 MTR_2g015630 28.297 364 237 13 1 348 1 356 2.34e-29 117
MS.gene76079.t1 MTR_7g111780 28.402 338 215 13 28 357 32 350 1.21e-28 114
MS.gene76079.t1 MTR_8g089805 26.870 361 224 14 8 340 13 361 2.77e-28 114
MS.gene76079.t1 MTR_1g060490 25.455 330 207 11 30 348 35 336 3.57e-28 113
MS.gene76079.t1 MTR_4g104240 26.344 372 239 12 1 352 5 361 3.77e-28 113
MS.gene76079.t1 MTR_7g087190 26.944 360 218 15 10 340 22 365 6.71e-28 113
MS.gene76079.t1 MTR_1g030230 28.177 362 220 12 12 348 12 358 3.85e-27 110
MS.gene76079.t1 MTR_1g030268 26.979 341 211 12 31 348 39 364 2.43e-26 108
MS.gene76079.t1 MTR_2g079090 26.380 326 211 12 32 346 30 337 4.81e-26 107
MS.gene76079.t1 MTR_1g060500 25.970 335 207 11 30 348 38 347 5.16e-26 107
MS.gene76079.t1 MTR_2g043980 28.000 325 199 14 32 343 34 336 5.75e-26 107
MS.gene76079.t1 MTR_2g079080 26.140 329 208 13 32 346 30 337 6.49e-26 107
MS.gene76079.t1 MTR_3g069780 26.377 345 222 12 32 358 30 360 1.07e-25 106
MS.gene76079.t1 MTR_0029s0050 26.364 330 208 13 32 347 30 338 3.78e-25 104
MS.gene76079.t1 MTR_0029s0100 26.364 330 208 13 32 347 30 338 6.46e-25 104
MS.gene76079.t1 MTR_1g092750 27.515 338 198 13 33 355 41 346 6.61e-25 103
MS.gene76079.t1 MTR_7g033155 26.166 386 224 13 9 348 10 380 7.36e-25 104
MS.gene76079.t1 MTR_8g028160 26.254 339 216 14 32 347 36 363 8.69e-25 104
MS.gene76079.t1 MTR_7g033150 26.225 347 211 12 32 348 35 366 1.87e-24 103
MS.gene76079.t1 MTR_7g116870 25.836 329 212 11 32 340 33 349 2.74e-24 102
MS.gene76079.t1 MTR_7g113860 27.164 335 205 12 31 340 28 348 4.21e-24 102
MS.gene76079.t1 MTR_3g438030 25.797 345 224 12 32 358 30 360 6.50e-24 101
MS.gene76079.t1 MTR_1g092760 27.381 336 200 12 33 355 40 344 6.81e-24 101
MS.gene76079.t1 MTR_2g015590 26.979 341 217 13 32 352 31 359 6.82e-24 101
MS.gene76079.t1 MTR_1g082390 28.319 339 195 12 31 340 30 349 8.05e-24 101
MS.gene76079.t1 MTR_1g030340 27.614 373 212 15 3 340 12 361 1.02e-23 101
MS.gene76079.t1 MTR_1g092690 25.301 332 204 12 26 343 43 344 1.39e-23 100
MS.gene76079.t1 MTR_2g018015 32.338 201 129 5 28 223 32 230 2.31e-23 99.0
MS.gene76079.t1 MTR_2g015650 25.915 355 219 16 16 343 12 349 8.87e-23 98.6
MS.gene76079.t1 MTR_7g113860 27.035 344 209 14 23 340 27 354 1.84e-22 97.8
MS.gene76079.t1 MTR_3g448360 26.727 333 210 12 32 344 29 347 1.85e-22 97.4
MS.gene76079.t1 MTR_5g087690 26.667 330 203 12 32 347 50 354 2.51e-22 97.4
MS.gene76079.t1 MTR_1g030220 26.630 368 224 15 9 348 17 366 4.51e-22 96.7
MS.gene76079.t1 MTR_6g007090 27.463 335 198 10 31 340 38 352 3.06e-21 94.0
MS.gene76079.t1 MTR_0127s0040 28.151 238 147 7 127 354 1 224 3.61e-21 91.3
MS.gene76079.t1 MTR_8g038680 25.762 361 232 11 16 357 15 358 6.31e-21 93.2
MS.gene76079.t1 MTR_3g069520 26.269 335 206 14 32 344 30 345 7.65e-21 92.8
MS.gene76079.t1 MTR_1g060520 24.925 333 177 13 30 348 38 311 7.94e-21 92.0
MS.gene76079.t1 MTR_6g007100 26.606 327 202 11 31 341 32 336 1.15e-20 92.4
MS.gene76079.t1 MTR_7g033165 25.982 331 208 11 31 337 32 349 1.22e-20 92.4
MS.gene76079.t1 MTR_7g111780 28.571 231 144 8 135 357 34 251 3.80e-20 89.4
MS.gene76079.t1 MTR_6g049220 43.820 89 50 0 30 118 28 116 5.69e-20 86.3
MS.gene76079.t1 MTR_4g056220 41.489 94 53 2 256 348 86 178 7.81e-20 86.7
MS.gene76079.t1 MTR_6g049230 35.156 128 75 3 206 332 74 194 2.60e-19 85.1
MS.gene76079.t1 MTR_1g030268 27.402 281 180 9 31 300 39 306 3.15e-19 87.8
MS.gene76079.t1 MTR_5g093090 31.792 173 105 5 30 190 26 197 4.60e-19 85.1
MS.gene76079.t1 MTR_6g034400 36.364 121 76 1 85 204 4 124 4.90e-19 82.8
MS.gene76079.t1 MTR_6g007095 25.749 334 209 11 31 342 40 356 7.97e-19 88.2
MS.gene76079.t1 MTR_6g007095 24.752 303 185 11 59 342 394 672 5.21e-13 70.5
MS.gene76079.t1 MTR_1g092740 24.540 326 205 11 33 346 39 335 2.82e-18 85.1
MS.gene76079.t1 MTR_4g036385 36.082 97 60 2 245 340 22 117 4.31e-18 80.1
MS.gene76079.t1 MTR_8g089805 24.468 282 180 11 84 340 20 293 5.16e-17 81.3
MS.gene76079.t1 MTR_2g087292 33.333 144 94 1 8 149 7 150 2.87e-16 78.6
MS.gene76079.t1 MTR_7g113860 26.545 275 165 10 92 340 17 280 5.98e-16 78.2
MS.gene76079.t1 MTR_1g030265 27.941 204 129 6 157 348 134 331 1.13e-15 77.8
MS.gene76079.t1 MTR_7g033165 26.855 283 170 11 31 298 32 292 5.82e-15 75.1
MS.gene76079.t1 MTR_2g017925 26.852 216 136 6 129 340 25 222 2.93e-14 72.4
MS.gene76079.t1 MTR_2g015590 25.632 277 187 9 32 297 31 299 3.99e-14 73.2
MS.gene76079.t1 MTR_8g012540 25.000 304 205 10 16 308 15 306 1.88e-13 70.9
MS.gene76079.t1 MTR_5g084880 31.667 120 75 2 179 298 1 113 3.30e-13 66.6
MS.gene76079.t1 MTR_5g093550 52.174 46 22 0 295 340 77 122 2.99e-12 64.3
MS.gene76079.t1 MTR_5g062890 56.604 53 22 1 31 82 27 79 3.70e-12 62.4
MS.gene76079.t1 MTR_8g062580 32.456 114 73 4 230 341 60 171 4.79e-12 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene76079.t1 AT2G40250 50.779 321 157 1 32 352 36 355 7.88e-118 345
MS.gene76079.t1 AT1G06990 45.312 320 163 4 31 346 36 347 1.24e-94 286
MS.gene76079.t1 AT1G58430 41.758 364 200 6 3 361 4 360 4.07e-94 285
MS.gene76079.t1 AT2G31540 40.346 347 198 4 5 348 8 348 1.48e-93 284
MS.gene76079.t1 AT2G24560 41.758 364 197 8 3 360 4 358 1.89e-93 283
MS.gene76079.t1 AT1G75900 39.650 343 194 5 8 348 22 353 5.87e-92 280
MS.gene76079.t1 AT2G30220 39.828 349 201 4 3 348 4 346 8.94e-90 274
MS.gene76079.t1 AT2G30310 39.429 350 202 5 3 348 4 347 1.28e-89 273
MS.gene76079.t1 AT1G20120 39.701 335 185 6 21 346 61 387 4.44e-87 268
MS.gene76079.t1 AT5G45960 40.379 317 178 5 32 343 47 357 2.90e-86 265
MS.gene76079.t1 AT1G75880 39.296 341 195 6 12 347 29 362 5.32e-86 265
MS.gene76079.t1 AT1G20132 38.438 333 186 5 30 355 59 379 2.05e-85 264
MS.gene76079.t1 AT5G42170 38.245 319 187 5 31 348 49 358 4.43e-85 262
MS.gene76079.t1 AT1G75880 39.181 342 195 7 12 347 29 363 2.96e-84 260
MS.gene76079.t1 AT4G26790 36.499 337 202 5 18 352 18 344 3.34e-81 252
MS.gene76079.t1 AT4G26790 36.499 337 202 5 18 352 18 344 3.34e-81 252
MS.gene76079.t1 AT1G75890 40.000 320 182 6 30 346 45 357 9.17e-81 251
MS.gene76079.t1 AT1G75890 40.000 320 182 6 30 346 74 386 1.45e-80 251
MS.gene76079.t1 AT1G20130 39.039 333 178 7 28 346 179 500 5.15e-79 251
MS.gene76079.t1 AT2G04570 35.613 351 215 5 12 359 8 350 5.42e-79 246
MS.gene76079.t1 AT1G20130 39.039 333 178 7 28 346 199 520 8.82e-79 251
MS.gene76079.t1 AT1G59406 35.965 342 207 6 10 348 6 338 1.65e-78 245
MS.gene76079.t1 AT1G59030 35.965 342 207 6 10 348 6 338 1.65e-78 245
MS.gene76079.t1 AT1G58725 35.965 342 207 6 10 348 6 338 1.65e-78 245
MS.gene76079.t1 AT1G75890 38.739 333 181 7 30 346 45 370 8.50e-78 244
MS.gene76079.t1 AT3G16370 38.110 328 177 6 31 347 29 341 9.36e-77 240
MS.gene76079.t1 AT5G03810 38.395 349 196 7 9 348 4 342 3.22e-75 236
MS.gene76079.t1 AT2G24560 41.009 317 173 7 3 313 4 312 4.48e-75 235
MS.gene76079.t1 AT2G42990 37.278 338 203 4 6 341 2 332 7.32e-74 233
MS.gene76079.t1 AT1G58520 35.110 319 190 6 31 348 29 331 1.17e-71 227
MS.gene76079.t1 AT1G58525 35.110 319 190 6 31 348 29 331 1.17e-71 227
MS.gene76079.t1 AT5G45950 35.817 349 209 7 14 360 22 357 2.15e-71 227
MS.gene76079.t1 AT3G43570 33.626 342 186 7 10 348 6 309 2.17e-71 226
MS.gene76079.t1 AT3G14820 35.110 319 196 5 31 348 31 339 5.66e-70 223
MS.gene76079.t1 AT5G03820 37.346 324 188 5 31 348 32 346 3.67e-69 221
MS.gene76079.t1 AT5G22810 35.629 334 197 7 30 355 32 355 5.54e-69 221
MS.gene76079.t1 AT5G03820 37.346 324 188 5 31 348 60 374 1.22e-68 221
MS.gene76079.t1 AT5G63170 37.224 317 174 7 31 343 27 322 2.42e-68 218
MS.gene76079.t1 AT3G53100 35.016 317 189 5 30 340 27 332 2.45e-65 211
MS.gene76079.t1 AT1G23500 38.730 315 170 7 32 343 35 329 2.90e-64 208
MS.gene76079.t1 AT1G20135 34.320 338 201 5 12 347 9 327 1.26e-63 206
MS.gene76079.t1 AT1G73610 36.792 318 179 6 32 347 35 332 2.80e-62 203
MS.gene76079.t1 AT1G75920 33.526 346 203 8 10 348 7 332 1.79e-60 198
MS.gene76079.t1 AT3G43550 34.708 291 177 6 10 297 6 286 7.42e-60 195
MS.gene76079.t1 AT2G31550 39.906 213 120 3 138 348 1 207 1.31e-56 184
MS.gene76079.t1 AT1G75930 36.202 337 193 9 15 346 11 330 1.54e-56 188
MS.gene76079.t1 AT5G08460 32.595 316 200 5 31 340 48 356 1.58e-56 189
MS.gene76079.t1 AT1G75920 32.312 359 201 9 10 346 2 340 2.25e-56 188
MS.gene76079.t1 AT1G75910 33.435 329 193 6 31 352 27 336 1.01e-55 186
MS.gene76079.t1 AT4G28780 30.029 343 229 5 8 347 7 341 7.28e-55 184
MS.gene76079.t1 AT4G10950 32.500 320 191 8 30 339 69 373 4.71e-53 181
MS.gene76079.t1 AT3G04290 30.556 324 212 5 29 348 26 340 5.41e-53 179
MS.gene76079.t1 AT3G50400 33.540 322 191 8 32 340 34 345 4.45e-51 174
MS.gene76079.t1 AT5G15720 33.036 336 209 9 30 358 28 354 6.52e-51 174
MS.gene76079.t1 AT1G33811 31.454 337 217 8 29 358 31 360 1.09e-50 173
MS.gene76079.t1 AT5G33370 30.094 319 210 5 32 346 30 339 2.19e-50 172
MS.gene76079.t1 AT4G10950 31.875 320 189 8 30 339 69 369 4.01e-50 172
MS.gene76079.t1 AT1G29670 31.464 321 195 9 29 340 29 333 1.60e-49 170
MS.gene76079.t1 AT1G75920 32.667 300 175 8 56 348 25 304 1.72e-49 169
MS.gene76079.t1 AT1G29670 31.464 321 195 9 29 340 97 401 8.42e-49 170
MS.gene76079.t1 AT1G29660 30.063 316 205 7 29 339 29 333 3.66e-48 167
MS.gene76079.t1 AT2G23540 31.805 349 210 10 9 340 21 358 5.30e-48 167
MS.gene76079.t1 AT5G41890 32.456 342 204 9 14 340 17 346 1.02e-47 166
MS.gene76079.t1 AT1G53920 29.834 362 228 11 1 348 10 359 8.39e-47 164
MS.gene76079.t1 AT5G18430 27.933 358 243 5 1 354 1 347 9.07e-47 163
MS.gene76079.t1 AT1G74460 29.375 320 211 7 34 348 25 334 1.14e-46 163
MS.gene76079.t1 AT1G71691 34.177 316 191 8 30 341 53 355 2.13e-46 162
MS.gene76079.t1 AT5G45670 29.882 338 222 7 8 340 5 332 5.60e-46 161
MS.gene76079.t1 AT4G18970 30.699 329 211 8 30 352 26 343 2.84e-44 156
MS.gene76079.t1 AT1G71250 31.161 353 226 9 1 346 8 350 6.27e-44 155
MS.gene76079.t1 AT1G75920 29.651 344 184 9 10 346 7 299 6.48e-44 154
MS.gene76079.t1 AT4G18970 30.183 328 214 7 30 352 26 343 7.65e-44 156
MS.gene76079.t1 AT1G71120 32.722 327 190 12 30 346 29 335 2.95e-43 154
MS.gene76079.t1 AT5G55050 29.141 326 215 6 31 348 38 355 1.09e-42 152
MS.gene76079.t1 AT2G19060 28.689 366 226 14 1 357 1 340 1.62e-42 151
MS.gene76079.t1 AT5G37690 29.275 345 226 9 10 348 4 336 3.50e-42 150
MS.gene76079.t1 AT5G37690 28.406 345 221 10 10 348 4 328 8.60e-38 139
MS.gene76079.t1 AT5G33370 30.370 270 175 5 32 297 30 290 1.82e-37 137
MS.gene76079.t1 AT5G15720 32.234 273 170 8 31 297 29 292 6.62e-36 133
MS.gene76079.t1 AT2G03980 29.154 319 201 11 31 340 42 344 8.99e-36 134
MS.gene76079.t1 AT2G03980 29.154 319 201 11 31 340 42 344 8.99e-36 134
MS.gene76079.t1 AT2G03980 29.154 319 201 11 31 340 42 344 8.99e-36 134
MS.gene76079.t1 AT2G03980 29.154 319 201 11 31 340 42 344 8.99e-36 134
MS.gene76079.t1 AT3G14225 27.103 321 215 8 32 343 37 347 2.07e-35 133
MS.gene76079.t1 AT5G40990 28.000 350 222 12 8 341 10 345 3.35e-35 132
MS.gene76079.t1 AT2G19050 26.190 336 217 11 29 357 28 339 3.45e-35 132
MS.gene76079.t1 AT3G14225 27.301 326 212 9 32 343 37 351 8.12e-35 131
MS.gene76079.t1 AT2G19010 28.313 332 214 10 29 357 27 337 9.68e-35 130
MS.gene76079.t1 AT1G53940 28.704 324 206 9 32 343 39 349 1.36e-34 131
MS.gene76079.t1 AT2G19010 28.313 332 214 10 29 357 57 367 1.54e-34 130
MS.gene76079.t1 AT1G53990 27.747 364 200 15 9 343 9 338 1.83e-32 125
MS.gene76079.t1 AT3G48460 27.548 363 230 14 10 355 19 365 2.08e-32 125
MS.gene76079.t1 AT4G30140 26.807 332 218 8 29 357 30 339 3.82e-32 124
MS.gene76079.t1 AT4G16230 34.783 207 128 4 25 226 23 227 4.16e-32 121
MS.gene76079.t1 AT1G71691 33.456 272 164 8 30 297 53 311 6.20e-32 122
MS.gene76079.t1 AT5G03610 27.554 323 197 12 33 343 44 341 2.40e-31 122
MS.gene76079.t1 AT5G15720 28.897 263 175 6 92 348 56 312 2.42e-30 118
MS.gene76079.t1 AT1G28580 27.855 359 228 17 9 348 15 361 8.23e-30 118
MS.gene76079.t1 AT5G03600 27.596 337 207 10 22 348 4 313 1.60e-29 116
MS.gene76079.t1 AT1G56670 27.095 358 226 12 8 347 12 352 2.72e-29 116
MS.gene76079.t1 AT5G03600 27.879 330 201 10 29 348 46 348 2.98e-29 116
MS.gene76079.t1 AT1G28570 27.869 366 237 15 4 352 7 362 3.28e-29 116
MS.gene76079.t1 AT1G31550 27.933 358 226 14 10 348 15 359 5.81e-29 116
MS.gene76079.t1 AT1G54020 28.840 319 190 13 32 342 33 322 7.25e-28 112
MS.gene76079.t1 AT1G28610 26.542 373 238 16 1 352 1 358 1.08e-27 112
MS.gene76079.t1 AT1G71691 30.038 263 168 7 83 341 4 254 1.14e-27 110
MS.gene76079.t1 AT2G19050 26.923 260 169 8 29 284 28 270 1.30e-27 110
MS.gene76079.t1 AT3G09930 26.235 324 201 13 33 343 40 338 8.56e-27 109
MS.gene76079.t1 AT3G09930 26.235 324 201 13 33 343 40 338 8.56e-27 109
MS.gene76079.t1 AT1G54010 27.247 356 219 12 1 342 1 330 9.19e-27 109
MS.gene76079.t1 AT1G09390 28.528 326 212 11 31 347 36 349 4.11e-26 107
MS.gene76079.t1 AT1G53940 29.044 272 174 8 32 297 39 297 7.09e-26 105
MS.gene76079.t1 AT5G14450 28.099 363 225 15 1 340 11 360 9.16e-26 107
MS.gene76079.t1 AT2G27360 27.928 333 207 13 32 343 33 353 1.10e-25 107
MS.gene76079.t1 AT2G04020 31.416 226 134 8 31 243 42 259 1.11e-25 104
MS.gene76079.t1 AT1G54790 26.554 354 225 14 10 340 10 351 3.04e-25 105
MS.gene76079.t1 AT1G31550 26.891 357 228 14 10 348 15 356 4.25e-25 105
MS.gene76079.t1 AT2G04020 31.797 217 134 7 31 239 42 252 5.17e-25 103
MS.gene76079.t1 AT3G05180 26.176 340 208 10 28 340 32 355 9.02e-25 104
MS.gene76079.t1 AT1G28650 24.793 363 235 12 8 347 13 360 3.58e-24 102
MS.gene76079.t1 AT1G28590 27.978 361 224 18 12 351 17 362 3.95e-24 102
MS.gene76079.t1 AT1G28640 23.720 371 257 13 4 357 7 368 4.30e-24 102
MS.gene76079.t1 AT1G28600 26.111 360 231 15 9 348 10 354 6.65e-24 102
MS.gene76079.t1 AT1G54030 26.994 326 194 14 25 342 47 336 2.34e-23 100
MS.gene76079.t1 AT1G28660 25.137 366 240 11 4 348 7 359 3.00e-23 100
MS.gene76079.t1 AT1G67830 26.946 334 209 13 31 340 29 351 3.88e-23 99.4
MS.gene76079.t1 AT1G54000 25.937 347 219 12 8 342 10 330 9.71e-23 98.6
MS.gene76079.t1 AT5G45910 27.089 347 217 15 29 351 27 361 1.25e-22 98.2
MS.gene76079.t1 AT3G14220 25.434 346 229 13 3 341 2 325 1.30e-22 97.8
MS.gene76079.t1 AT4G01130 25.000 332 215 10 32 340 34 354 2.32e-22 97.4
MS.gene76079.t1 AT3G26430 26.347 334 211 12 31 340 30 352 2.65e-22 97.4
MS.gene76079.t1 AT3G14210 27.083 336 193 16 32 348 36 338 3.50e-22 97.1
MS.gene76079.t1 AT1G28660 25.137 366 239 12 4 348 7 358 4.67e-22 96.7
MS.gene76079.t1 AT1G56670 28.383 303 187 10 8 297 12 297 1.11e-21 94.4
MS.gene76079.t1 AT2G36325 26.284 331 197 14 29 343 44 343 2.05e-21 94.4
MS.gene76079.t1 AT3G62280 27.761 335 215 13 28 351 32 350 1.25e-20 92.4
MS.gene76079.t1 AT1G28670 24.100 361 251 10 4 348 7 360 2.88e-20 91.7
MS.gene76079.t1 AT1G54790 25.915 355 226 17 9 340 10 350 3.67e-19 88.2
MS.gene76079.t1 AT1G28580 26.241 282 182 14 82 347 8 279 6.54e-17 80.9
MS.gene76079.t1 AT1G54020 28.897 263 153 12 87 342 1 236 1.51e-16 79.3
MS.gene76079.t1 AT1G54020 28.897 263 153 12 87 342 1 236 1.51e-16 79.3
MS.gene76079.t1 AT1G54020 28.897 263 153 12 87 342 1 236 1.51e-16 79.3
MS.gene76079.t1 AT4G01130 26.064 188 116 5 174 340 83 268 4.94e-15 75.1
MS.gene76079.t1 AT4G16220 36.364 121 66 2 25 136 23 141 6.78e-15 73.9
MS.gene76079.t1 AT1G28570 26.291 213 147 7 147 352 81 290 8.32e-15 74.7
MS.gene76079.t1 AT1G54790 25.197 381 222 20 9 340 10 376 2.62e-14 73.9
MS.gene76079.t1 AT1G54020 29.000 200 123 9 149 342 1 187 4.05e-14 71.6
MS.gene76079.t1 AT4G01130 25.000 276 186 8 32 297 34 298 5.34e-14 72.4
MS.gene76079.t1 AT1G28570 26.238 202 139 7 158 352 1 199 9.79e-14 70.5
MS.gene76079.t1 AT5G03980 25.888 197 137 5 155 346 114 306 2.34e-13 70.5
MS.gene76079.t1 AT4G16233 32.990 97 63 2 245 340 6 101 3.96e-12 63.5

Find 99 sgRNAs with CRISPR-Local

Find 151 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAACAAAATTCTGAAGATTT+TGG 0.137422 5.2:-71056112 None:intergenic
TTAATAATAATTACCGTATT+TGG 0.153561 5.2:-71057076 None:intergenic
CTTAGCTAAGGTCTTGGATT+TGG 0.218569 5.2:+71055899 MS.gene76079:CDS
AATCCTTAATTCCTAGGTTT+TGG 0.239744 5.2:-71055776 None:intergenic
TTTGCAATAAATTATGAATA+AGG 0.248317 5.2:-71056981 None:intergenic
TAGCCAAAACCTAGGAATTA+AGG 0.261785 5.2:+71055773 MS.gene76079:CDS
TAATCGCAAAGAACGCATTT+TGG 0.271306 5.2:-71056001 None:intergenic
ATCCGTCTAAGTATCTGTTT+TGG 0.276436 5.2:+71057321 MS.gene76079:CDS
ATGAATAAGGGATTGAAGTT+TGG 0.289969 5.2:-71056968 None:intergenic
TTAGCTAAGGTCTTGGATTT+GGG 0.291860 5.2:+71055900 MS.gene76079:CDS
CTTTCTATTGTCACTAGAAT+TGG 0.297313 5.2:-71056871 None:intergenic
GAGGAATGAAGAGGCTGTTT+TGG 0.301529 5.2:-71055532 None:intergenic
GTCTATGTTGTTGTTGTTGC+CGG 0.306930 5.2:-71055652 None:intergenic
TTGCAATAAATTATGAATAA+GGG 0.311455 5.2:-71056980 None:intergenic
TGAATCTACCGGTTGGGATT+TGG 0.311553 5.2:-71055722 None:intergenic
ACCGATAATGATTTGTTAAC+CGG 0.318424 5.2:+71055828 MS.gene76079:CDS
ATTAATTTGCAGAGATTGTA+TGG 0.328390 5.2:+71056796 MS.gene76079:intron
TTGTTAACCGGGGTTAGTTT+TGG 0.337441 5.2:+71055840 MS.gene76079:CDS
TACCGTATTTGGTTGGGTAT+TGG 0.342544 5.2:-71057065 None:intergenic
CTACCGGTTGGGATTTGGTT+TGG 0.343428 5.2:-71055717 None:intergenic
TTGAAGGCAATGGCTGAGTT+TGG 0.349295 5.2:-71055585 None:intergenic
GCAATAAATCCTTAATTCCT+AGG 0.360824 5.2:-71055782 None:intergenic
AAACACGTTGGAGCCAGTTT+TGG 0.367374 5.2:-71056906 None:intergenic
CTATACACCCATTCTTGATA+TGG 0.385458 5.2:+71057041 MS.gene76079:CDS
AATAATTACCGTATTTGGTT+GGG 0.385671 5.2:-71057071 None:intergenic
ATGGCAGGTCTTCCTCCAAT+TGG 0.386569 5.2:+71056841 MS.gene76079:CDS
CCCGGTTAACAAATCATTAT+CGG 0.388677 5.2:-71055829 None:intergenic
GTTGTTGTTGCCGGCATCAA+TGG 0.392804 5.2:-71055643 None:intergenic
GCATGTCACCTAGCCAAAAC+TGG 0.399932 5.2:+71056893 MS.gene76079:CDS
CGTGAAGGATGCTGTGGAAC+AGG 0.401349 5.2:+71057248 MS.gene76079:CDS
TATGTTGTACAGTGTTTATA+TGG 0.414959 5.2:+71056040 MS.gene76079:CDS
GGCTGAGTTTGGCATTGAAA+TGG 0.422931 5.2:-71055574 None:intergenic
CGTTCTTTGCGATTAGCATT+GGG 0.423854 5.2:+71056009 MS.gene76079:CDS
TCGCCGAAGGCAAAGATGGC+AGG 0.432688 5.2:-71055615 None:intergenic
AGTGGCCTTAGCTAAGGTCT+TGG 0.434034 5.2:+71055893 MS.gene76079:CDS
CGTTTGTGAATCTACCGGTT+GGG 0.439505 5.2:-71055728 None:intergenic
AACAGATACTTAGACGGATC+AGG 0.449122 5.2:-71057317 None:intergenic
TAATAATTACCGTATTTGGT+TGG 0.463965 5.2:-71057072 None:intergenic
ACCCCTGCCATCTTTGCCTT+CGG 0.464714 5.2:+71055612 MS.gene76079:CDS
ATAATAGAAGAGAGAGGTAG+AGG 0.471992 5.2:-71055551 None:intergenic
ATGTCAAGTTCGTTGCAAAC+AGG 0.473895 5.2:-71057287 None:intergenic
GCGTTCTTTGCGATTAGCAT+TGG 0.475649 5.2:+71056008 MS.gene76079:CDS
GGAGGTAATTCTAACTAGTA+AGG 0.477486 5.2:-71057418 None:intergenic
GTCCAATACCCAACCAAATA+CGG 0.478205 5.2:+71057063 MS.gene76079:CDS
CCGTTTGTGAATCTACCGGT+TGG 0.478281 5.2:-71055729 None:intergenic
TTGCAGAGATTGTATGGAGC+AGG 0.482080 5.2:+71056802 MS.gene76079:intron
AGAATTGGAAGACAACCAAT+TGG 0.492898 5.2:-71056856 None:intergenic
GGAGTCGCCGAAGGCAAAGA+TGG 0.493618 5.2:-71055619 None:intergenic
CCTTAGCTAAGGCCACTGTT+TGG 0.505645 5.2:-71055887 None:intergenic
CCGATAATGATTTGTTAACC+GGG 0.505924 5.2:+71055829 MS.gene76079:CDS
ACAAGAAGGGTACTCAGTTA+TGG 0.506665 5.2:+71057361 MS.gene76079:CDS
AATCATTATCGGTAACTTGA+GGG 0.510339 5.2:-71055818 None:intergenic
TTTCCAAACCAAATCCCAAC+CGG 0.516644 5.2:+71055714 MS.gene76079:CDS
GTATTGGACCATATCAAGAA+TGG 0.519077 5.2:-71057049 None:intergenic
TGGAACAGGAACATTGGAGT+TGG 0.523341 5.2:+71057262 MS.gene76079:CDS
GGCGACTCCACCATTGATGC+CGG 0.524779 5.2:+71055633 MS.gene76079:CDS
TCTAACTAGTAAGGTATGAA+AGG 0.528213 5.2:-71057409 None:intergenic
CTTTCCGTTTGTGAATCTAC+CGG 0.530447 5.2:-71055733 None:intergenic
AAATCATTATCGGTAACTTG+AGG 0.538713 5.2:-71055819 None:intergenic
CGCCGAAGGCAAAGATGGCA+GGG 0.539960 5.2:-71055614 None:intergenic
TATTGGACCATATCAAGAAT+GGG 0.542270 5.2:-71057048 None:intergenic
GGAACAGGAACATTGGAGTT+GGG 0.545611 5.2:+71057263 MS.gene76079:CDS
CGTTGTGACCACTTGCCCTA+CGG 0.547938 5.2:+71055684 MS.gene76079:CDS
TTTGAGAATCAATGTTGTGT+TGG 0.548194 5.2:-71056936 None:intergenic
CTGAGTACCCTTCTTGTGTA+GGG 0.549047 5.2:-71057355 None:intergenic
GTTTGGAAAATCACGACCGT+AGG 0.552596 5.2:-71055700 None:intergenic
CCAAACAGTGGCCTTAGCTA+AGG 0.553598 5.2:+71055887 MS.gene76079:CDS
GCTGTGCACCCTACACAAGA+AGG 0.554097 5.2:+71057347 MS.gene76079:CDS
ACTGAGTACCCTTCTTGTGT+AGG 0.563553 5.2:-71057356 None:intergenic
ATCAATGGTGGAGTCGCCGA+AGG 0.573448 5.2:-71055628 None:intergenic
TGTTTGAACAAGCTTTGTTG+AGG 0.574397 5.2:+71055937 MS.gene76079:CDS
AGAGAGGTAGAGGAATGAAG+AGG 0.579277 5.2:-71055541 None:intergenic
ATGCTGTGGAACAGGAACAT+TGG 0.580423 5.2:+71057256 MS.gene76079:CDS
ACTTGAGGGTCAAGAAAAGC+GGG 0.581751 5.2:-71055804 None:intergenic
ACAGATACTTAGACGGATCA+GGG 0.582197 5.2:-71057316 None:intergenic
ATTGGAAGACAACCAATTGG+AGG 0.583053 5.2:-71056853 None:intergenic
TTTGGAAAATCACGACCGTA+GGG 0.588915 5.2:-71055699 None:intergenic
AAATGGATAATAGAAGAGAG+AGG 0.591368 5.2:-71055557 None:intergenic
CCCCGAGCCAAAACTAACCC+CGG 0.606961 5.2:-71055847 None:intergenic
AACTTGAGGGTCAAGAAAAG+CGG 0.612386 5.2:-71055805 None:intergenic
AATCACGACCGTAGGGCAAG+TGG 0.612416 5.2:-71055692 None:intergenic
GCCGAAGGCAAAGATGGCAG+GGG 0.615010 5.2:-71055613 None:intergenic
CAAATCCAAGACCTTAGCTA+AGG 0.617591 5.2:-71055898 None:intergenic
CCAACCGGTAGATTCACAAA+CGG 0.620096 5.2:+71055729 MS.gene76079:CDS
GTTGTTGCCGGCATCAATGG+TGG 0.621137 5.2:-71055640 None:intergenic
AAGGATAGTAGTCTGTAGAC+CGG 0.630067 5.2:-71057390 None:intergenic
TCCCAAAACAGATACTTAGA+CGG 0.646127 5.2:-71057323 None:intergenic
CTGTGCACCCTACACAAGAA+GGG 0.648737 5.2:+71057348 MS.gene76079:CDS
GATTACCTTAGCCAAAACCT+AGG 0.649509 5.2:+71055765 MS.gene76079:CDS
CGATAATGATTTGTTAACCG+GGG 0.659598 5.2:+71055830 MS.gene76079:CDS
AATTCACGTGAAGGATGCTG+TGG 0.660408 5.2:+71057242 MS.gene76079:CDS
TACTCAGTTATGGTCAACAC+CGG 0.660593 5.2:+71057371 MS.gene76079:CDS
TGTATGGAGCAGGAGCTCGA+AGG 0.661854 5.2:+71056812 MS.gene76079:CDS
GGTCTTGAGAATTCACGTGA+AGG 0.668190 5.2:+71057233 MS.gene76079:intron
AGGTTTGGATAGCCAAACAG+TGG 0.677829 5.2:+71055875 MS.gene76079:CDS
GTTGGTCGTTGCAAACACGT+TGG 0.688097 5.2:-71056918 None:intergenic
ATGGCACAAAATACTCCACA+TGG 0.688325 5.2:+71056059 MS.gene76079:CDS
CAAGTGGTCACAACGCATTG+CGG 0.722575 5.2:-71055676 None:intergenic
TAAGATGAAACAGAACCATG+TGG 0.723069 5.2:-71056074 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GATTTTAGATATATAAAATA+CGG + chr5.2:71056154-71056173 MS.gene76079:intron 10.0%
!! GTTAAACATTTATATAAACT+AGG + chr5.2:71056427-71056446 MS.gene76079:intron 15.0%
!! TTAATAATAATTACCGTATT+TGG - chr5.2:71057079-71057098 None:intergenic 15.0%
!! TTGCAATAAATTATGAATAA+GGG - chr5.2:71056983-71057002 None:intergenic 15.0%
!! TTTGCAATAAATTATGAATA+AGG - chr5.2:71056984-71057003 None:intergenic 15.0%
!!! AAATTTTCCTAACAAATTTT+AGG - chr5.2:71056482-71056501 None:intergenic 15.0%
!!! AATTTTCCTAACAAATTTTA+GGG - chr5.2:71056481-71056500 None:intergenic 15.0%
!! AACACATAATTCATAATTGA+TGG - chr5.2:71057173-71057192 None:intergenic 20.0%
!! AACATTTATATAAACTAGGT+AGG + chr5.2:71056431-71056450 MS.gene76079:intron 20.0%
!! AGAAATTATGATCAATTGTT+TGG + chr5.2:71056329-71056348 MS.gene76079:intron 20.0%
!! GAAATTATGATCAATTGTTT+GGG + chr5.2:71056330-71056349 MS.gene76079:intron 20.0%
!!! AAAAATTGTTGGTAATGAAA+AGG + chr5.2:71055965-71055984 MS.gene76079:CDS 20.0%
!!! ATTTAACCCTAAAATTTGTT+AGG + chr5.2:71056472-71056491 MS.gene76079:intron 20.0%
! AAGTTAAAAAAGAAAAGAGG+AGG - chr5.2:71056300-71056319 None:intergenic 25.0%
! AATAATTACCGTATTTGGTT+GGG - chr5.2:71057074-71057093 None:intergenic 25.0%
! ACGAAGTTAAAAAAGAAAAG+AGG - chr5.2:71056303-71056322 None:intergenic 25.0%
! ACTTGTACTATGCATAAAAA+AGG - chr5.2:71056558-71056577 None:intergenic 25.0%
! AGTTAAAAAAGAAAAGAGGA+GGG - chr5.2:71056299-71056318 None:intergenic 25.0%
! ATTCTACTTTCATCTAAACA+TGG + chr5.2:71056682-71056701 MS.gene76079:intron 25.0%
! CTTGTACTATGCATAAAAAA+GGG - chr5.2:71056557-71056576 None:intergenic 25.0%
! GAGAGATTTGAAAGTAAATA+TGG - chr5.2:71056211-71056230 None:intergenic 25.0%
! TAATAATTACCGTATTTGGT+TGG - chr5.2:71057075-71057094 None:intergenic 25.0%
! TAGATATATAAAATACGGCA+AGG + chr5.2:71056159-71056178 MS.gene76079:intron 25.0%
! TATGTTGTACAGTGTTTATA+TGG + chr5.2:71056040-71056059 MS.gene76079:CDS 25.0%
! TGAACTCTTAAACATAATCT+AGG + chr5.2:71056394-71056413 MS.gene76079:intron 25.0%
! TTGAGGATAAGAAAAATTGT+TGG + chr5.2:71055954-71055973 MS.gene76079:CDS 25.0%
! TTTGCTAAATAAATTTGTCC+AGG + chr5.2:71057212-71057231 MS.gene76079:intron 25.0%
!! AAATCTTCAGAATTTTGTTC+AGG + chr5.2:71056115-71056134 MS.gene76079:CDS 25.0%
!! ATAATTGATGGCAAATTCTA+AGG - chr5.2:71057161-71057180 None:intergenic 25.0%
!! TGTGAATACTAACTTGATTT+TGG - chr5.2:71056366-71056385 None:intergenic 25.0%
!!! ATTAATTTGCAGAGATTGTA+TGG + chr5.2:71056796-71056815 MS.gene76079:intron 25.0%
!!! GAACAAAATTCTGAAGATTT+TGG - chr5.2:71056115-71056134 None:intergenic 25.0%
AAATCATTATCGGTAACTTG+AGG - chr5.2:71055822-71055841 None:intergenic 30.0%
AAATGGATAATAGAAGAGAG+AGG - chr5.2:71055560-71055579 None:intergenic 30.0%
AATCATTATCGGTAACTTGA+GGG - chr5.2:71055821-71055840 None:intergenic 30.0%
ATGAATAAGGGATTGAAGTT+TGG - chr5.2:71056971-71056990 None:intergenic 30.0%
CTTTCTATTGTCACTAGAAT+TGG - chr5.2:71056874-71056893 None:intergenic 30.0%
GCAATAAATCCTTAATTCCT+AGG - chr5.2:71055785-71055804 None:intergenic 30.0%
TATTGGACCATATCAAGAAT+GGG - chr5.2:71057051-71057070 None:intergenic 30.0%
TTTGAGAATCAATGTTGTGT+TGG - chr5.2:71056939-71056958 None:intergenic 30.0%
! AATCCTTAATTCCTAGGTTT+TGG - chr5.2:71055779-71055798 None:intergenic 30.0%
!! ACCGATAATGATTTGTTAAC+CGG + chr5.2:71055828-71055847 MS.gene76079:CDS 30.0%
!! CATAAAAAAGGGTACTACTT+TGG - chr5.2:71056546-71056565 None:intergenic 30.0%
AAAAAAGAAAAGAGGAGGGA+GGG - chr5.2:71056295-71056314 None:intergenic 35.0%
AGAATTGGAAGACAACCAAT+TGG - chr5.2:71056859-71056878 None:intergenic 35.0%
ATAATAGAAGAGAGAGGTAG+AGG - chr5.2:71055554-71055573 None:intergenic 35.0%
CCCGGTTAACAAATCATTAT+CGG - chr5.2:71055832-71055851 None:intergenic 35.0%
CTATACACCCATTCTTGATA+TGG + chr5.2:71057041-71057060 MS.gene76079:CDS 35.0%
CTTTACTATGAGTGGTATGT+GGG + chr5.2:71056635-71056654 MS.gene76079:intron 35.0%
GTATTGGACCATATCAAGAA+TGG - chr5.2:71057052-71057071 None:intergenic 35.0%
TAAAAAAGAAAAGAGGAGGG+AGG - chr5.2:71056296-71056315 None:intergenic 35.0%
TAAGATGAAACAGAACCATG+TGG - chr5.2:71056077-71056096 None:intergenic 35.0%
TAGCCAAAACCTAGGAATTA+AGG + chr5.2:71055773-71055792 MS.gene76079:CDS 35.0%
TCCCAAAACAGATACTTAGA+CGG - chr5.2:71057326-71057345 None:intergenic 35.0%
TCTTCACTCTTTACTATGAG+TGG + chr5.2:71056627-71056646 MS.gene76079:intron 35.0%
TCTTTACTATGAGTGGTATG+TGG + chr5.2:71056634-71056653 MS.gene76079:intron 35.0%
TTAGCTAAGGTCTTGGATTT+GGG + chr5.2:71055900-71055919 MS.gene76079:CDS 35.0%
! ATCCGTCTAAGTATCTGTTT+TGG + chr5.2:71057321-71057340 MS.gene76079:CDS 35.0%
! CTTCAGAATTTTGTTCAGGT+TGG + chr5.2:71056119-71056138 MS.gene76079:intron 35.0%
! TAATCGCAAAGAACGCATTT+TGG - chr5.2:71056004-71056023 None:intergenic 35.0%
! TCCGTCTAAGTATCTGTTTT+GGG + chr5.2:71057322-71057341 MS.gene76079:CDS 35.0%
!! CCGATAATGATTTGTTAACC+GGG + chr5.2:71055829-71055848 MS.gene76079:CDS 35.0%
!! CGATAATGATTTGTTAACCG+GGG + chr5.2:71055830-71055849 MS.gene76079:CDS 35.0%
!! GGCATTTGATTTGTATCTCT+AGG + chr5.2:71056656-71056675 MS.gene76079:intron 35.0%
!! TGTTTGAACAAGCTTTGTTG+AGG + chr5.2:71055937-71055956 MS.gene76079:CDS 35.0%
!!! TAATTCCTAGGTTTTGGCTA+AGG - chr5.2:71055773-71055792 None:intergenic 35.0%
!!! TAGGTTTTGGCTAAGGTAAT+CGG - chr5.2:71055766-71055785 None:intergenic 35.0%
AACAGATACTTAGACGGATC+AGG - chr5.2:71057320-71057339 None:intergenic 40.0%
AACTTGAGGGTCAAGAAAAG+CGG - chr5.2:71055808-71055827 None:intergenic 40.0%
AAGGATAGTAGTCTGTAGAC+CGG - chr5.2:71057393-71057412 None:intergenic 40.0%
ACAGATACTTAGACGGATCA+GGG - chr5.2:71057319-71057338 None:intergenic 40.0%
ATGGCACAAAATACTCCACA+TGG + chr5.2:71056059-71056078 MS.gene76079:CDS 40.0%
ATGTCAAGTTCGTTGCAAAC+AGG - chr5.2:71057290-71057309 None:intergenic 40.0%
ATTGGAAGACAACCAATTGG+AGG - chr5.2:71056856-71056875 None:intergenic 40.0%
CAAATCCAAGACCTTAGCTA+AGG - chr5.2:71055901-71055920 None:intergenic 40.0%
CGTTCTTTGCGATTAGCATT+GGG + chr5.2:71056009-71056028 MS.gene76079:CDS 40.0%
CTTAGCTAAGGTCTTGGATT+TGG + chr5.2:71055899-71055918 MS.gene76079:CDS 40.0%
CTTTCCGTTTGTGAATCTAC+CGG - chr5.2:71055736-71055755 None:intergenic 40.0%
GATTACCTTAGCCAAAACCT+AGG + chr5.2:71055765-71055784 MS.gene76079:CDS 40.0%
GTCCAATACCCAACCAAATA+CGG + chr5.2:71057063-71057082 MS.gene76079:CDS 40.0%
TACCGTATTTGGTTGGGTAT+TGG - chr5.2:71057068-71057087 None:intergenic 40.0%
TACTCAGTTATGGTCAACAC+CGG + chr5.2:71057371-71057390 MS.gene76079:CDS 40.0%
TATGGCTGAAAAATGAGCAG+TGG - chr5.2:71056193-71056212 None:intergenic 40.0%
TTTCCAAACCAAATCCCAAC+CGG + chr5.2:71055714-71055733 MS.gene76079:CDS 40.0%
TTTGGAAAATCACGACCGTA+GGG - chr5.2:71055702-71055721 None:intergenic 40.0%
! GTCTATGTTGTTGTTGTTGC+CGG - chr5.2:71055655-71055674 None:intergenic 40.0%
!! ACAAGAAGGGTACTCAGTTA+TGG + chr5.2:71057361-71057380 MS.gene76079:CDS 40.0%
!! TTTTGGCTAAGGTAATCGGT+CGG - chr5.2:71055762-71055781 None:intergenic 40.0%
!!! AGGGGTTTTATTGAAGGCAA+TGG - chr5.2:71055598-71055617 None:intergenic 40.0%
!!! TTGTTAACCGGGGTTAGTTT+TGG + chr5.2:71055840-71055859 MS.gene76079:CDS 40.0%
AATTCACGTGAAGGATGCTG+TGG + chr5.2:71057242-71057261 MS.gene76079:CDS 45.0%
ACTGAGTACCCTTCTTGTGT+AGG - chr5.2:71057359-71057378 None:intergenic 45.0%
ACTTGAGGGTCAAGAAAAGC+GGG - chr5.2:71055807-71055826 None:intergenic 45.0%
AGAGAGGTAGAGGAATGAAG+AGG - chr5.2:71055544-71055563 None:intergenic 45.0%
AGGTTTGGATAGCCAAACAG+TGG + chr5.2:71055875-71055894 MS.gene76079:CDS 45.0%
ATGCTGTGGAACAGGAACAT+TGG + chr5.2:71057256-71057275 MS.gene76079:CDS 45.0%
CCAACCGGTAGATTCACAAA+CGG + chr5.2:71055729-71055748 MS.gene76079:CDS 45.0%
CTGAGTACCCTTCTTGTGTA+GGG - chr5.2:71057358-71057377 None:intergenic 45.0%
GCGTTCTTTGCGATTAGCAT+TGG + chr5.2:71056008-71056027 MS.gene76079:CDS 45.0%
GGAACAGGAACATTGGAGTT+GGG + chr5.2:71057263-71057282 MS.gene76079:CDS 45.0%
GGTCTTGAGAATTCACGTGA+AGG + chr5.2:71057233-71057252 MS.gene76079:intron 45.0%
GTTTGGAAAATCACGACCGT+AGG - chr5.2:71055703-71055722 None:intergenic 45.0%
TCACGTGAATTCTCAAGACC+TGG - chr5.2:71057233-71057252 None:intergenic 45.0%
TGGAACAGGAACATTGGAGT+TGG + chr5.2:71057262-71057281 MS.gene76079:CDS 45.0%
TTGAAGGCAATGGCTGAGTT+TGG - chr5.2:71055588-71055607 None:intergenic 45.0%
TTGCAGAGATTGTATGGAGC+AGG + chr5.2:71056802-71056821 MS.gene76079:intron 45.0%
! AAACACGTTGGAGCCAGTTT+TGG - chr5.2:71056909-71056928 None:intergenic 45.0%
! AGGAGCTCGAAGGATTTTGA+TGG + chr5.2:71056822-71056841 MS.gene76079:CDS 45.0%
! CGTTTGTGAATCTACCGGTT+GGG - chr5.2:71055731-71055750 None:intergenic 45.0%
! GAGGAATGAAGAGGCTGTTT+TGG - chr5.2:71055535-71055554 None:intergenic 45.0%
! GGCTGAGTTTGGCATTGAAA+TGG - chr5.2:71055577-71055596 None:intergenic 45.0%
! TGAATCTACCGGTTGGGATT+TGG - chr5.2:71055725-71055744 None:intergenic 45.0%
!!! GATGGCAGGGGTTTTATTGA+AGG - chr5.2:71055604-71055623 None:intergenic 45.0%
AAAGAAAAGAGGAGGGAGGG+AGG - chr5.2:71056292-71056311 None:intergenic 50.0%
AAGAAAAGAGGAGGGAGGGA+GGG - chr5.2:71056291-71056310 None:intergenic 50.0%
ATGGCAGGTCTTCCTCCAAT+TGG + chr5.2:71056841-71056860 MS.gene76079:CDS 50.0%
CAAGTGGTCACAACGCATTG+CGG - chr5.2:71055679-71055698 None:intergenic 50.0%
CCGTTTGTGAATCTACCGGT+TGG - chr5.2:71055732-71055751 None:intergenic 50.0%
CCTTAGCTAAGGCCACTGTT+TGG - chr5.2:71055890-71055909 None:intergenic 50.0%
CTGTGCACCCTACACAAGAA+GGG + chr5.2:71057348-71057367 MS.gene76079:CDS 50.0%
GCATGTCACCTAGCCAAAAC+TGG + chr5.2:71056893-71056912 MS.gene76079:CDS 50.0%
GTTGGTCGTTGCAAACACGT+TGG - chr5.2:71056921-71056940 None:intergenic 50.0%
! AGTGGCCTTAGCTAAGGTCT+TGG + chr5.2:71055893-71055912 MS.gene76079:CDS 50.0%
! CCAAACAGTGGCCTTAGCTA+AGG + chr5.2:71055887-71055906 MS.gene76079:CDS 50.0%
! CTACCGGTTGGGATTTGGTT+TGG - chr5.2:71055720-71055739 None:intergenic 50.0%
! GTTGTTGTTGCCGGCATCAA+TGG - chr5.2:71055646-71055665 None:intergenic 50.0%
!! GCTCGAAGGATTTTGATGGC+AGG + chr5.2:71056826-71056845 MS.gene76079:CDS 50.0%
!!! AACCGGGGTTAGTTTTGGCT+CGG + chr5.2:71055845-71055864 MS.gene76079:CDS 50.0%
AATCACGACCGTAGGGCAAG+TGG - chr5.2:71055695-71055714 None:intergenic 55.0%
ACCCCTGCCATCTTTGCCTT+CGG + chr5.2:71055612-71055631 MS.gene76079:CDS 55.0%
CGTGAAGGATGCTGTGGAAC+AGG + chr5.2:71057248-71057267 MS.gene76079:CDS 55.0%
CGTTGTGACCACTTGCCCTA+CGG + chr5.2:71055684-71055703 MS.gene76079:CDS 55.0%
GCTGTGCACCCTACACAAGA+AGG + chr5.2:71057347-71057366 MS.gene76079:CDS 55.0%
GTTGTTGCCGGCATCAATGG+TGG - chr5.2:71055643-71055662 None:intergenic 55.0%
TGTATGGAGCAGGAGCTCGA+AGG + chr5.2:71056812-71056831 MS.gene76079:CDS 55.0%
! ATCAATGGTGGAGTCGCCGA+AGG - chr5.2:71055631-71055650 None:intergenic 55.0%
!!! ACCGGGGTTAGTTTTGGCTC+GGG + chr5.2:71055846-71055865 MS.gene76079:CDS 55.0%
!!! CGTTGGAGCCAGTTTTGGCT+AGG - chr5.2:71056904-71056923 None:intergenic 55.0%
AAAAGAGGAGGGAGGGAGGG+AGG - chr5.2:71056288-71056307 None:intergenic 60.0%
AAAGAGGAGGGAGGGAGGGA+GGG - chr5.2:71056287-71056306 None:intergenic 60.0%
CCCCGAGCCAAAACTAACCC+CGG - chr5.2:71055850-71055869 None:intergenic 60.0%
CGCCGAAGGCAAAGATGGCA+GGG - chr5.2:71055617-71055636 None:intergenic 60.0%
GCCGAAGGCAAAGATGGCAG+GGG - chr5.2:71055616-71055635 None:intergenic 60.0%
GGAGTCGCCGAAGGCAAAGA+TGG - chr5.2:71055622-71055641 None:intergenic 60.0%
GGCGACTCCACCATTGATGC+CGG + chr5.2:71055633-71055652 MS.gene76079:CDS 60.0%
TCGCCGAAGGCAAAGATGGC+AGG - chr5.2:71055618-71055637 None:intergenic 60.0%
!!! AGTTTTGGCTCGGGGGGTTC+AGG + chr5.2:71055855-71055874 MS.gene76079:CDS 60.0%
!!! CCGGGGTTAGTTTTGGCTCG+GGG + chr5.2:71055847-71055866 MS.gene76079:CDS 60.0%
!!! CGGGGTTAGTTTTGGCTCGG+GGG + chr5.2:71055848-71055867 MS.gene76079:CDS 60.0%
!!! GGGGTTAGTTTTGGCTCGGG+GGG + chr5.2:71055849-71055868 MS.gene76079:CDS 60.0%
! TGGCTCGGGGGGTTCAGGTT+TGG + chr5.2:71055860-71055879 MS.gene76079:CDS 65.0%


Chromosome Type Strat End Strand Name
chr5.2 gene 71055525 71057430 71055525 ID=MS.gene76079
chr5.2 mRNA 71055525 71057430 71055525 ID=MS.gene76079.t1;Parent=MS.gene76079
chr5.2 exon 71055525 71056136 71055525 ID=MS.gene76079.t1.exon1;Parent=MS.gene76079.t1
chr5.2 CDS 71055525 71056136 71055525 ID=cds.MS.gene76079.t1;Parent=MS.gene76079.t1
chr5.2 exon 71056808 71057084 71056808 ID=MS.gene76079.t1.exon2;Parent=MS.gene76079.t1
chr5.2 CDS 71056808 71057084 71056808 ID=cds.MS.gene76079.t1;Parent=MS.gene76079.t1
chr5.2 exon 71057234 71057430 71057234 ID=MS.gene76079.t1.exon3;Parent=MS.gene76079.t1
chr5.2 CDS 71057234 71057430 71057234 ID=cds.MS.gene76079.t1;Parent=MS.gene76079.t1
Gene Sequence

>MS.gene76079

ATGGCATCCAAAACAGCCTCTTCATTCCTCTACCTCTCTCTTCTATTATCCATTTCAATGCCAAACTCAGCCATTGCCTTCAATAAAACCCCTGCCATCTTTGCCTTCGGCGACTCCACCATTGATGCCGGCAACAACAACAACATAGACACCGCAATGCGTTGTGACCACTTGCCCTACGGTCGTGATTTTCCAAACCAAATCCCAACCGGTAGATTCACAAACGGAAAGTTACCGACCGATTACCTTAGCCAAAACCTAGGAATTAAGGATTTATTGCCCGCTTTTCTTGACCCTCAAGTTACCGATAATGATTTGTTAACCGGGGTTAGTTTTGGCTCGGGGGGTTCAGGTTTGGATAGCCAAACAGTGGCCTTAGCTAAGGTCTTGGATTTGGGTACACAGTTTCAGTTGTTTGAACAAGCTTTGTTGAGGATAAGAAAAATTGTTGGTAATGAAAAGGCTAATGATATAATCCAAAATGCGTTCTTTGCGATTAGCATTGGGACTAATGATATGTTGTACAGTGTTTATATGGCACAAAATACTCCACATGGTTCTGTTTCATCTTATCAAGATTTTTTGCTCCAAAATCTTCAGAATTTTGTTCAGGTTGGTATTTTATTTTAGATTTTAGATATATAAAATACGGCAAGGTATATGTACCACTGCTCATTTTTCAGCCATATTTACTTTCAAATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCTCCCTCCCTCCCTCCTCTTTTCTTTTTTAACTTCGTTAAAGAAGAAATTATGATCAATTGTTTGGGTTTAAAGAATCCAAAATCAAGTTAGTATTCACATAAACTAATGAACTCTTAAACATAATCTAGGAGTTTAGTATGTTAAACATTTATATAAACTAGGTAGGTGTTTTGTATGTGATCATATTTAACCCTAAAATTTGTTAGGAAAATTTGTTCAATTGTTACAAAAAGCTTCACTGTACAACAAATAAAACCAAAGTAGTACCCTTTTTTATGCATAGTACAAGTTTTTACAAAGCTTCACAAAATGAAATCACTTTGATCAATTATGTCATAGTCTTCACTCTTTACTATGAGTGGTATGTGGGCATTTGATTTGTATCTCTAGGATTATTCTACTTTCATCTAAACATGGTTCTATGTATTTACAACTTCTAATTACTATACTCATTTAGAAAAAAATTTGATAGAGTAAATTTTTTCAACAGCAAACTAAGAATGCATTCATTAATTTGCAGAGATTGTATGGAGCAGGAGCTCGAAGGATTTTGATGGCAGGTCTTCCTCCAATTGGTTGTCTTCCAATTCTAGTGACAATAGAAAGCATGTCACCTAGCCAAAACTGGCTCCAACGTGTTTGCAACGACCAACACAACATTGATTCTCAAATTTACAACACCAAACTTCAATCCCTTATTCATAATTTATTGCAAACTACACTACATGATGCTAAGATTGCATATTTTGATATCTATACACCCATTCTTGATATGGTCCAATACCCAACCAAATACGGTAATTATTATTAACTCACAATCAAGAGAAAACATTAAATGTGCATTAAGACTAACTTCTATAAAGTGCTCTACCTTAGAATTTGCCATCAATTATGAATTATGTGTTTGACAAAGTGTTAACTAATTTTGCTAAATAAATTTGTCCAGGTCTTGAGAATTCACGTGAAGGATGCTGTGGAACAGGAACATTGGAGTTGGGTCCTGTTTGCAACGAACTTGACATGATTTGCCCTGATCCGTCTAAGTATCTGTTTTGGGATGCTGTGCACCCTACACAAGAAGGGTACTCAGTTATGGTCAACACCGGTCTACAGACTACTATCCTTTCATACCTTACTAGTTAG
Protein sequence

>MS.gene76079.t1

MASKTASSFLYLSLLLSISMPNSAIAFNKTPAIFAFGDSTIDAGNNNNIDTAMRCDHLPYGRDFPNQIPTGRFTNGKLPTDYLSQNLGIKDLLPAFLDPQVTDNDLLTGVSFGSGGSGLDSQTVALAKVLDLGTQFQLFEQALLRIRKIVGNEKANDIIQNAFFAISIGTNDMLYSVYMAQNTPHGSVSSYQDFLLQNLQNFVQRLYGAGARRILMAGLPPIGCLPILVTIESMSPSQNWLQRVCNDQHNIDSQIYNTKLQSLIHNLLQTTLHDAKIAYFDIYTPILDMVQYPTKYGLENSREGCCGTGTLELGPVCNELDMICPDPSKYLFWDAVHPTQEGYSVMVNTGLQTTILSYLTS