AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene76086


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene76086.t1 MTR_5g083160 94.536 604 31 1 1 602 1 604 0.0 1078
MS.gene76086.t1 MTR_1g023035 37.186 597 331 14 17 598 21 588 6.17e-122 374
MS.gene76086.t1 MTR_1g023030 38.146 561 316 13 50 598 47 588 1.62e-121 372
MS.gene76086.t1 MTR_1g023030 38.579 394 230 7 214 598 61 451 1.01e-83 270
MS.gene76086.t1 MTR_3g029720 87.234 47 6 0 268 314 14 60 5.49e-22 91.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene76086.t1 AT5G05480 52.095 549 241 6 49 592 47 578 0.0 563
MS.gene76086.t1 AT3G14920 35.935 615 334 14 9 599 10 588 4.62e-125 382

Find 155 sgRNAs with CRISPR-Local

Find 193 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTGAAATTGAATTTGAAAT+TGG 0.163805 5.2:+71142019 None:intergenic
TGACTAAAGGATTATCATTT+TGG 0.173838 5.2:-71141496 MS.gene76086:CDS
GGGGAGTAGGGTGTGGTAAA+AGG 0.175122 5.2:+71142373 None:intergenic
TTCATGGAAATGATGAATTT+TGG 0.178774 5.2:-71141790 MS.gene76086:CDS
GTATTGTTCGCCTTTGATTT+TGG 0.203549 5.2:+71142300 None:intergenic
TGAATGCAAATTTGCATCTT+TGG 0.220511 5.2:-71141469 MS.gene76086:CDS
GTGGGATTAATCCGTTGTTT+TGG 0.242948 5.2:-71141628 MS.gene76086:CDS
GTCACAGTAATAACTCTTAA+AGG 0.253820 5.2:+71141116 None:intergenic
CTGATAATTCTAGAATCTTC+TGG 0.277439 5.2:-71142216 MS.gene76086:CDS
AATTCTTGGTGGGGCCCATT+TGG 0.287125 5.2:+71142490 None:intergenic
CAGAAGATTCTAGAATTATC+AGG 0.289221 5.2:+71142217 None:intergenic
ATGTTACTTCTATGAATTCT+TGG 0.309038 5.2:+71142476 None:intergenic
AATTGAAGGTACCAGATTCT+AGG 0.313783 5.2:-71141970 MS.gene76086:CDS
GGGGTTGGTTGGTAGGGCGG+TGG 0.318083 5.2:+71142451 None:intergenic
GAAGTTTATGTGACGATTGA+TGG 0.318232 5.2:-71141695 MS.gene76086:CDS
ATAAGTTAAGTTGTTATAAT+CGG 0.326112 5.2:-71140902 MS.gene76086:CDS
CGAATGTGTGGTGGAGGATT+TGG 0.326355 5.2:+71142416 None:intergenic
ATTCTTGGTGGGGCCCATTT+GGG 0.326705 5.2:+71142491 None:intergenic
GGGAGCCCATTGTTGCCATT+GGG 0.329806 5.2:-71141607 MS.gene76086:CDS
TGGGAGCCCATTGTTGCCAT+TGG 0.330570 5.2:-71141608 MS.gene76086:CDS
CAATGGAAGGGTGGGGAGTA+GGG 0.342788 5.2:+71142361 None:intergenic
CAGGTTGAGCGGTGCTTGTT+CGG 0.344049 5.2:+71142236 None:intergenic
GGGAGTAGGGTGTGGTAAAA+GGG 0.347136 5.2:+71142374 None:intergenic
CATTTGTAGTTCGTGCGAAT+CGG 0.370288 5.2:-71141433 MS.gene76086:CDS
ACGACCGCATCGCCGCCTTA+TGG 0.370929 5.2:-71142279 MS.gene76086:CDS
ATTATTCCGATTTGTGATAG+TGG 0.377476 5.2:-71141920 MS.gene76086:CDS
TGAGGAGAAGTATGAAGGTA+AGG 0.384813 5.2:-71141036 MS.gene76086:CDS
ATTTGTAGTTCGTGCGAATC+GGG 0.392402 5.2:-71141432 MS.gene76086:CDS
CTTGCGTTTAACCTTCAACT+TGG 0.392585 5.2:+71141142 None:intergenic
GAATGCAAATTTGCATCTTT+GGG 0.400128 5.2:-71141468 MS.gene76086:CDS
GAAGAGTTTAAAAGACTTGA+TGG 0.400669 5.2:-71141371 MS.gene76086:CDS
GGAGTAGGGTGTGGTAAAAG+GGG 0.408213 5.2:+71142375 None:intergenic
ACAATGGAAGGGTGGGGAGT+AGG 0.409265 5.2:+71142360 None:intergenic
GAATTTGAAATTGGATTAAA+CGG 0.409949 5.2:+71142028 None:intergenic
TGAGAGATTGTGTAATGGTT+TGG 0.412487 5.2:+71142535 None:intergenic
CATAACCACCGTTGTTTCAA+AGG 0.413309 5.2:-71141282 MS.gene76086:CDS
TGAAATGATTTCCAAGTTGA+AGG 0.414580 5.2:-71141153 MS.gene76086:CDS
GGATTTGGTGGGAACATGAT+GGG 0.416731 5.2:+71142431 None:intergenic
AACAACGGTGGTTATGTTAC+CGG 0.423170 5.2:+71141289 None:intergenic
CGGAATGTTGCAGCTTCTAA+TGG 0.428827 5.2:-71140882 MS.gene76086:CDS
CTTCTTACTGATTTATCTCA+TGG 0.430948 5.2:-71141062 MS.gene76086:CDS
GTTAAGGTGTTTGATAATAG+AGG 0.433603 5.2:-71141176 MS.gene76086:CDS
TACTTCTATGAATTCTTGGT+GGG 0.434499 5.2:+71142480 None:intergenic
CCGATTTGTGATAGTGGAAA+AGG 0.436989 5.2:-71141914 MS.gene76086:CDS
TGGTGGGGCCCATTTGGGTG+AGG 0.438453 5.2:+71142496 None:intergenic
ACGATTGATGGCGAGCTTGT+TGG 0.441840 5.2:-71141683 MS.gene76086:CDS
GAAGGGTGGGGAGTAGGGTG+TGG 0.443713 5.2:+71142366 None:intergenic
CCGGTGAAAACCACCGGAAA+AGG 0.444832 5.2:+71141650 None:intergenic
TTTGGAATTGGGGTGACTAA+AGG 0.444953 5.2:-71141509 MS.gene76086:CDS
GAGACGGAGACAACGATAGA+AGG 0.446704 5.2:-71141329 MS.gene76086:CDS
GAGTAGGGTGTGGTAAAAGG+GGG 0.449171 5.2:+71142376 None:intergenic
CATGATGGGGTTGGTTGGTA+GGG 0.451080 5.2:+71142445 None:intergenic
GATGGGGTTGGTTGGTAGGG+CGG 0.452825 5.2:+71142448 None:intergenic
TGAGAGTGGGAGTGAAGTGA+AGG 0.453096 5.2:+71142571 None:intergenic
CTCGACGCCGGCGAGCCATA+AGG 0.453389 5.2:+71142264 None:intergenic
AGGATTTGGTGGGAACATGA+TGG 0.456289 5.2:+71142430 None:intergenic
GGTGGAGGACAATGGAAGGG+TGG 0.457127 5.2:+71142352 None:intergenic
AATTCGTATATTACGAGGAA+TGG 0.457235 5.2:-71141752 MS.gene76086:CDS
GTCTTTGAGGAGTGAATTGA+AGG 0.461605 5.2:-71141984 MS.gene76086:CDS
ATAACCACCGTTGTTTCAAA+GGG 0.462248 5.2:-71141281 MS.gene76086:CDS
GTTATAAAGTTTAAAAGCAA+TGG 0.462481 5.2:-71141242 MS.gene76086:CDS
GAACCTCATGGTTTGGATGA+TGG 0.464831 5.2:-71141092 MS.gene76086:CDS
ACATTCAGTTAGTAATGAAC+AGG 0.467291 5.2:-71141006 MS.gene76086:CDS
TGTGACAGAACCTCATGGTT+TGG 0.467738 5.2:-71141099 MS.gene76086:CDS
TCGTTCAAAACCCTAGAATC+TGG 0.468521 5.2:+71141959 None:intergenic
AGTAGGGTGTGGTAAAAGGG+GGG 0.470255 5.2:+71142377 None:intergenic
TGGTGGGAACATGATGGGGT+TGG 0.474175 5.2:+71142436 None:intergenic
GGGTTGGTTGGTAGGGCGGT+GGG 0.475724 5.2:+71142452 None:intergenic
TTACTTCTATGAATTCTTGG+TGG 0.478057 5.2:+71142479 None:intergenic
GATCAAGATCAAGGTCTTTG+AGG 0.483662 5.2:-71141997 MS.gene76086:CDS
GTAGGGTGTGGTAAAAGGGG+GGG 0.484985 5.2:+71142378 None:intergenic
TTCCTCGTAATATACGAATT+CGG 0.486725 5.2:+71141755 None:intergenic
ATGTGTGGTGGAGGATTTGG+TGG 0.490218 5.2:+71142419 None:intergenic
CAAGGTTGGATTGAGTAAGA+AGG 0.490766 5.2:+71142161 None:intergenic
GAGGAGAAGTATGAAGGTAA+GGG 0.494930 5.2:-71141035 MS.gene76086:CDS
ATGGGTCATTCTGTTCTAGA+TGG 0.495557 5.2:-71140960 MS.gene76086:CDS
AACGCCCCAATGGCAACAAT+GGG 0.496682 5.2:+71141602 None:intergenic
ACATGATGGGGTTGGTTGGT+AGG 0.497927 5.2:+71142444 None:intergenic
ATTGTTAACGCTGAATTCAC+CGG 0.498122 5.2:-71142115 MS.gene76086:CDS
CAATTTCAAGATCAAGATCA+AGG 0.499539 5.2:-71142006 MS.gene76086:CDS
AAACGCCCCAATGGCAACAA+TGG 0.501567 5.2:+71141601 None:intergenic
AAGCAATGGAACTTATAAGA+TGG 0.502066 5.2:-71141228 MS.gene76086:CDS
AAGGGATGAAGAATAGAAAG+AGG 0.504045 5.2:+71142590 None:intergenic
ATTGAAGGTACCAGATTCTA+GGG 0.507873 5.2:-71141969 MS.gene76086:CDS
CAAGCATCATAGTGAGGTCA+AGG 0.510547 5.2:+71142143 None:intergenic
GTTGAGAGTGAGAGTGAGAG+TGG 0.511477 5.2:+71142557 None:intergenic
AAAGGGTTGGATTAATGTGA+TGG 0.513860 5.2:-71140979 MS.gene76086:CDS
GGGAACATGATGGGGTTGGT+TGG 0.515466 5.2:+71142440 None:intergenic
CATCATAGTGAGGTCAAGGT+TGG 0.516242 5.2:+71142147 None:intergenic
TAGTAATGAACAGGAATCAA+AGG 0.518491 5.2:-71140997 MS.gene76086:CDS
TTGTTGCACAAGAAATTACA+TGG 0.518769 5.2:+71140818 None:intergenic
TGGAGGACAATGGAAGGGTG+GGG 0.520078 5.2:+71142354 None:intergenic
AAGGTTGGATTGAGTAAGAA+GGG 0.520145 5.2:+71142162 None:intergenic
AACGGTGATTTGAAATTCGC+CGG 0.521811 5.2:+71142096 None:intergenic
GTTCTTGAGAGATTGTGTAA+TGG 0.522393 5.2:+71142530 None:intergenic
CTCTTCCGCACGTTGAACAT+CGG 0.526120 5.2:+71141388 None:intergenic
ATCCCACCGGTGAAAACCAC+CGG 0.527462 5.2:+71141644 None:intergenic
ATGTTGCAGCTTCTAATGGC+AGG 0.529564 5.2:-71140878 MS.gene76086:CDS
ATAGTGGAAAAGGAGGGTTT+TGG 0.531929 5.2:-71141904 MS.gene76086:CDS
AATGGTTTAGATACTGAGAG+AGG 0.533349 5.2:-71141734 MS.gene76086:CDS
GTGGAGGACAATGGAAGGGT+GGG 0.536461 5.2:+71142353 None:intergenic
TAGAAAGAGGAAATATGAGA+AGG 0.536936 5.2:+71142603 None:intergenic
CACTTCCACGCCAAAATCAA+AGG 0.538500 5.2:-71142310 MS.gene76086:CDS
GGAGCCCATTGTTGCCATTG+GGG 0.538722 5.2:-71141606 MS.gene76086:CDS
TGATGGCGAGCTTGTTGGAT+CGG 0.539236 5.2:-71141678 MS.gene76086:CDS
ATCGCCGCCTTATGGCTCGC+CGG 0.539511 5.2:-71142271 MS.gene76086:CDS
ATGAACAGGAATCAAAGGGT+TGG 0.545499 5.2:-71140992 MS.gene76086:CDS
CGGAGACAACGATAGAAGGA+TGG 0.545745 5.2:-71141325 MS.gene76086:CDS
ACTTCTATGAATTCTTGGTG+GGG 0.550362 5.2:+71142481 None:intergenic
GATTTGGTGGGAACATGATG+GGG 0.555089 5.2:+71142432 None:intergenic
AGTAATGAACAGGAATCAAA+GGG 0.556433 5.2:-71140996 MS.gene76086:CDS
CCATGGTGGAGGACAATGGA+AGG 0.561044 5.2:+71142348 None:intergenic
GACGCCGGCGAGCCATAAGG+CGG 0.562192 5.2:+71142267 None:intergenic
ATGACACGTGTCCATGGTGG+AGG 0.563330 5.2:+71142337 None:intergenic
GTCAATTCGATATCATATGA+AGG 0.571119 5.2:+71141572 None:intergenic
ATCGGAATAATCAAATCCGC+TGG 0.571825 5.2:+71141932 None:intergenic
TTAGATACTGAGAGAGGGAA+TGG 0.572938 5.2:-71141728 MS.gene76086:CDS
GTTTCGTGTGGAAGCAGAGA+CGG 0.577494 5.2:-71141345 MS.gene76086:CDS
AGAGGAAATATGAGAAGGTG+TGG 0.578391 5.2:+71142608 None:intergenic
GTGTCCATGGTGGAGGACAA+TGG 0.587122 5.2:+71142344 None:intergenic
GAGAGTGGGAGTGAAGTGAA+GGG 0.588290 5.2:+71142572 None:intergenic
GGAAATATGAGAAGGTGTGG+TGG 0.588578 5.2:+71142611 None:intergenic
ATGGTTTAGATACTGAGAGA+GGG 0.592371 5.2:-71141733 MS.gene76086:CDS
TATTGGCGAATGTGTGGTGG+AGG 0.593587 5.2:+71142410 None:intergenic
ACTGAATCCCTTTGAAACAA+CGG 0.595279 5.2:+71141274 None:intergenic
TGAAGGATGACACGTGTCCA+TGG 0.599584 5.2:+71142331 None:intergenic
TGGATTAAACGGAACCCTAA+CGG 0.602312 5.2:+71142039 None:intergenic
ATTTGTGATAGTGGAAAAGG+AGG 0.603632 5.2:-71141911 MS.gene76086:CDS
AAGGGTTGGATTAATGTGAT+GGG 0.604286 5.2:-71140978 MS.gene76086:CDS
CTCCGAATTCGTATATTACG+AGG 0.612479 5.2:-71141757 MS.gene76086:CDS
AGGAAGATCAAACGCCCCAA+TGG 0.612739 5.2:+71141592 None:intergenic
TTGAGAGTGAGAGTGAGAGT+GGG 0.616178 5.2:+71142558 None:intergenic
TGTTCGGAGAAGCTCGACGC+CGG 0.616376 5.2:+71142252 None:intergenic
GGAGACAACGATAGAAGGAT+GGG 0.619537 5.2:-71141324 MS.gene76086:CDS
CGATAGTATTGGCGAATGTG+TGG 0.621125 5.2:+71142404 None:intergenic
CCTTCCATTGTCCTCCACCA+TGG 0.621891 5.2:-71142348 MS.gene76086:CDS
CGAGCCATAAGGCGGCGATG+CGG 0.627829 5.2:+71142275 None:intergenic
ATTACTGTGACAGAACCTCA+TGG 0.628439 5.2:-71141104 MS.gene76086:CDS
AAAGAAGAATTCGAATTCCG+CGG 0.643885 5.2:-71141850 MS.gene76086:CDS
TCTAGAATTATCAGGTTGAG+CGG 0.647727 5.2:+71142225 None:intergenic
ACTGCTTTGTAAGTATTCCG+CGG 0.651236 5.2:+71141833 None:intergenic
GTAATAATACAAAAGAGTAA+CGG 0.652535 5.2:+71142078 None:intergenic
TTTGTGATAGTGGAAAAGGA+GGG 0.653727 5.2:-71141910 MS.gene76086:CDS
CTCGTAATATACGAATTCGG+AGG 0.653770 5.2:+71141758 None:intergenic
TAGTATTGGCGAATGTGTGG+TGG 0.655578 5.2:+71142407 None:intergenic
AAACAACGGATTAATCCCAC+CGG 0.660925 5.2:+71141631 None:intergenic
ACTTGATGGTGAGTTTCGTG+TGG 0.667006 5.2:-71141357 MS.gene76086:CDS
ACAATGGGCTCCCAAAACAA+CGG 0.668088 5.2:+71141617 None:intergenic
GTTGGATTGAGTAAGAAGGG+AGG 0.672195 5.2:+71142165 None:intergenic
CATGGTGGAGGACAATGGAA+GGG 0.682041 5.2:+71142349 None:intergenic
GAATCCCTTTGAAACAACGG+TGG 0.691435 5.2:+71141277 None:intergenic
TAAAACCGATGTTCAACGTG+CGG 0.694519 5.2:-71141393 MS.gene76086:CDS
TGTGTGGTGGAGGATTTGGT+GGG 0.713309 5.2:+71142420 None:intergenic
TATCCATCATCCAAACCATG+AGG 0.716504 5.2:+71141089 None:intergenic
AGGATGACACGTGTCCATGG+TGG 0.745565 5.2:+71142334 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATAAGTTAAGTTGTTATAAT+CGG - chr5.2:71142550-71142569 MS.gene76086:CDS 15.0%
!! GTAATAATACAAAAGAGTAA+CGG + chr5.2:71141377-71141396 None:intergenic 20.0%
!! GTTATAAAGTTTAAAAGCAA+TGG - chr5.2:71142210-71142229 MS.gene76086:CDS 20.0%
!!! CTTGAAATTGAATTTGAAAT+TGG + chr5.2:71141436-71141455 None:intergenic 20.0%
!!! GAATTTGAAATTGGATTAAA+CGG + chr5.2:71141427-71141446 None:intergenic 20.0%
!! ATGTTACTTCTATGAATTCT+TGG + chr5.2:71140979-71140998 None:intergenic 25.0%
!! GAAATTTAAAGCCAAAAAGA+AGG - chr5.2:71142254-71142273 MS.gene76086:CDS 25.0%
!! GAATTGTATGTTTCTTTTCA+TGG - chr5.2:71141646-71141665 MS.gene76086:CDS 25.0%
!! TGACTAAAGGATTATCATTT+TGG - chr5.2:71141956-71141975 MS.gene76086:CDS 25.0%
!! TTCATGGAAATGATGAATTT+TGG - chr5.2:71141662-71141681 MS.gene76086:CDS 25.0%
!!! AAAAGACATGTTTTTGGAAT+TGG - chr5.2:71141931-71141950 MS.gene76086:CDS 25.0%
!!! AAAGACATGTTTTTGGAATT+GGG - chr5.2:71141932-71141951 MS.gene76086:CDS 25.0%
AAGCAATGGAACTTATAAGA+TGG - chr5.2:71142224-71142243 MS.gene76086:CDS 30.0%
AATTCGTATATTACGAGGAA+TGG - chr5.2:71141700-71141719 MS.gene76086:CDS 30.0%
ACATTCAGTTAGTAATGAAC+AGG - chr5.2:71142446-71142465 MS.gene76086:CDS 30.0%
AGTAATGAACAGGAATCAAA+GGG - chr5.2:71142456-71142475 MS.gene76086:CDS 30.0%
CAATTTCAAGATCAAGATCA+AGG - chr5.2:71141446-71141465 MS.gene76086:CDS 30.0%
GAAGAGTTTAAAAGACTTGA+TGG - chr5.2:71142081-71142100 MS.gene76086:CDS 30.0%
GAATGCAAATTTGCATCTTT+GGG - chr5.2:71141984-71142003 MS.gene76086:CDS 30.0%
GTCAATTCGATATCATATGA+AGG + chr5.2:71141883-71141902 None:intergenic 30.0%
GTCACAGTAATAACTCTTAA+AGG + chr5.2:71142339-71142358 None:intergenic 30.0%
TAAAGCCAAAAAGAAGGTTA+AGG - chr5.2:71142260-71142279 MS.gene76086:CDS 30.0%
TACTTCTATGAATTCTTGGT+GGG + chr5.2:71140975-71140994 None:intergenic 30.0%
TAGAAAGAGGAAATATGAGA+AGG + chr5.2:71140852-71140871 None:intergenic 30.0%
TAGTAATGAACAGGAATCAA+AGG - chr5.2:71142455-71142474 MS.gene76086:CDS 30.0%
TCAAGAATCTTCCCTAAAAA+TGG + chr5.2:71141907-71141926 None:intergenic 30.0%
TGAATGCAAATTTGCATCTT+TGG - chr5.2:71141983-71142002 MS.gene76086:CDS 30.0%
TTACTTCTATGAATTCTTGG+TGG + chr5.2:71140976-71140995 None:intergenic 30.0%
TTCCTCGTAATATACGAATT+CGG + chr5.2:71141700-71141719 None:intergenic 30.0%
! AAACACCTTAACCTTCTTTT+TGG + chr5.2:71142268-71142287 None:intergenic 30.0%
! ATTATTCCGATTTGTGATAG+TGG - chr5.2:71141532-71141551 MS.gene76086:CDS 30.0%
! GTTAAGGTGTTTGATAATAG+AGG - chr5.2:71142276-71142295 MS.gene76086:CDS 30.0%
! TGAAATGATTTCCAAGTTGA+AGG - chr5.2:71142299-71142318 MS.gene76086:CDS 30.0%
! TTTCAAAGGGATTCAGTTTT+AGG - chr5.2:71142184-71142203 MS.gene76086:CDS 30.0%
!! CAGAAGATTCTAGAATTATC+AGG + chr5.2:71141238-71141257 None:intergenic 30.0%
!! CTGATAATTCTAGAATCTTC+TGG - chr5.2:71141236-71141255 MS.gene76086:CDS 30.0%
!! CTTCTTACTGATTTATCTCA+TGG - chr5.2:71142390-71142409 MS.gene76086:CDS 30.0%
!! TATTTTCAAGCATCATAGTG+AGG + chr5.2:71141318-71141337 None:intergenic 30.0%
!! TGATTTATCTCATGGTTTTG+AGG - chr5.2:71142398-71142417 MS.gene76086:CDS 30.0%
!! TTTTAGGGAAGATTCTTGAT+GGG - chr5.2:71141908-71141927 MS.gene76086:CDS 30.0%
!! TTTTTAGGGAAGATTCTTGA+TGG - chr5.2:71141907-71141926 MS.gene76086:CDS 30.0%
!!! AAGACATGTTTTTGGAATTG+GGG - chr5.2:71141933-71141952 MS.gene76086:CDS 30.0%
AAAGAAGAATTCGAATTCCG+CGG - chr5.2:71141602-71141621 MS.gene76086:CDS 35.0%
AAAGGGTTGGATTAATGTGA+TGG - chr5.2:71142473-71142492 MS.gene76086:CDS 35.0%
AAGGGATGAAGAATAGAAAG+AGG + chr5.2:71140865-71140884 None:intergenic 35.0%
AAGGGTTGGATTAATGTGAT+GGG - chr5.2:71142474-71142493 MS.gene76086:CDS 35.0%
AAGGTTGGATTGAGTAAGAA+GGG + chr5.2:71141293-71141312 None:intergenic 35.0%
AATGGTTTAGATACTGAGAG+AGG - chr5.2:71141718-71141737 MS.gene76086:CDS 35.0%
ACAAACACAAAAACTCCGTT+AGG - chr5.2:71141398-71141417 MS.gene76086:CDS 35.0%
ACTTCTATGAATTCTTGGTG+GGG + chr5.2:71140974-71140993 None:intergenic 35.0%
ATGGTTTAGATACTGAGAGA+GGG - chr5.2:71141719-71141738 MS.gene76086:CDS 35.0%
ATTGTTAACGCTGAATTCAC+CGG - chr5.2:71141337-71141356 MS.gene76086:CDS 35.0%
CAAACACAAAAACTCCGTTA+GGG - chr5.2:71141399-71141418 MS.gene76086:CDS 35.0%
GAAGTTTATGTGACGATTGA+TGG - chr5.2:71141757-71141776 MS.gene76086:CDS 35.0%
GTTCTTGAGAGATTGTGTAA+TGG + chr5.2:71140925-71140944 None:intergenic 35.0%
TGAGAGATTGTGTAATGGTT+TGG + chr5.2:71140920-71140939 None:intergenic 35.0%
! ATAACCACCGTTGTTTCAAA+GGG - chr5.2:71142171-71142190 MS.gene76086:CDS 35.0%
! CCTTTTCCACTATCACAAAT+CGG + chr5.2:71141541-71141560 None:intergenic 35.0%
! GATGGGAAAAGACATGTTTT+TGG - chr5.2:71141925-71141944 MS.gene76086:CDS 35.0%
!! AATTGAAGGTACCAGATTCT+AGG - chr5.2:71141482-71141501 MS.gene76086:CDS 35.0%
!! ACTGAATCCCTTTGAAACAA+CGG + chr5.2:71142181-71142200 None:intergenic 35.0%
!! ATTGAAGGTACCAGATTCTA+GGG - chr5.2:71141483-71141502 MS.gene76086:CDS 35.0%
!! ATTTGTGATAGTGGAAAAGG+AGG - chr5.2:71141541-71141560 MS.gene76086:CDS 35.0%
!! GTATTGTTCGCCTTTGATTT+TGG + chr5.2:71141155-71141174 None:intergenic 35.0%
!! TCTAGAATTATCAGGTTGAG+CGG + chr5.2:71141230-71141249 None:intergenic 35.0%
!! TGGGATTAATCCGTTGTTTT+GGG - chr5.2:71141825-71141844 MS.gene76086:CDS 35.0%
!! TTTGTGATAGTGGAAAAGGA+GGG - chr5.2:71141542-71141561 MS.gene76086:CDS 35.0%
!!! ATCGAATTGACGCCATTTTT+AGG - chr5.2:71141892-71141911 MS.gene76086:CDS 35.0%
!!! TCGAATTGACGCCATTTTTA+GGG - chr5.2:71141893-71141912 MS.gene76086:CDS 35.0%
AACAACGGTGGTTATGTTAC+CGG + chr5.2:71142166-71142185 None:intergenic 40.0%
ACTCAAAAACCTCACCCAAA+TGG - chr5.2:71140947-71140966 MS.gene76086:CDS 40.0%
ACTGCTTTGTAAGTATTCCG+CGG + chr5.2:71141622-71141641 None:intergenic 40.0%
AGAGGAAATATGAGAAGGTG+TGG + chr5.2:71140847-71140866 None:intergenic 40.0%
ATCGGAATAATCAAATCCGC+TGG + chr5.2:71141523-71141542 None:intergenic 40.0%
ATGAACAGGAATCAAAGGGT+TGG - chr5.2:71142460-71142479 MS.gene76086:CDS 40.0%
ATTACTGTGACAGAACCTCA+TGG - chr5.2:71142348-71142367 MS.gene76086:CDS 40.0%
ATTTGTAGTTCGTGCGAATC+GGG - chr5.2:71142020-71142039 MS.gene76086:CDS 40.0%
CAAGGTTGGATTGAGTAAGA+AGG + chr5.2:71141294-71141313 None:intergenic 40.0%
CATTTGTAGTTCGTGCGAAT+CGG - chr5.2:71142019-71142038 MS.gene76086:CDS 40.0%
CTCAAAAACCTCACCCAAAT+GGG - chr5.2:71140948-71140967 MS.gene76086:CDS 40.0%
CTCCGAATTCGTATATTACG+AGG - chr5.2:71141695-71141714 MS.gene76086:CDS 40.0%
CTCGTAATATACGAATTCGG+AGG + chr5.2:71141697-71141716 None:intergenic 40.0%
CTTGCGTTTAACCTTCAACT+TGG + chr5.2:71142313-71142332 None:intergenic 40.0%
GATCAAGATCAAGGTCTTTG+AGG - chr5.2:71141455-71141474 MS.gene76086:CDS 40.0%
TAAAACCGATGTTCAACGTG+CGG - chr5.2:71142059-71142078 MS.gene76086:CDS 40.0%
TATCCATCATCCAAACCATG+AGG + chr5.2:71142366-71142385 None:intergenic 40.0%
TCGTTCAAAACCCTAGAATC+TGG + chr5.2:71141496-71141515 None:intergenic 40.0%
TGGATTAAACGGAACCCTAA+CGG + chr5.2:71141416-71141435 None:intergenic 40.0%
TTAGATACTGAGAGAGGGAA+TGG - chr5.2:71141724-71141743 MS.gene76086:CDS 40.0%
! AACGGTGATTTGAAATTCGC+CGG + chr5.2:71141359-71141378 None:intergenic 40.0%
! ATGGGTCATTCTGTTCTAGA+TGG - chr5.2:71142492-71142511 MS.gene76086:CDS 40.0%
! CATAACCACCGTTGTTTCAA+AGG - chr5.2:71142170-71142189 MS.gene76086:CDS 40.0%
! GAGGAGAAGTATGAAGGTAA+GGG - chr5.2:71142417-71142436 MS.gene76086:CDS 40.0%
! GTCTTTGAGGAGTGAATTGA+AGG - chr5.2:71141468-71141487 MS.gene76086:CDS 40.0%
! GTGGGATTAATCCGTTGTTT+TGG - chr5.2:71141824-71141843 MS.gene76086:CDS 40.0%
! TGAGGAGAAGTATGAAGGTA+AGG - chr5.2:71142416-71142435 MS.gene76086:CDS 40.0%
! TTTGGAATTGGGGTGACTAA+AGG - chr5.2:71141943-71141962 MS.gene76086:CDS 40.0%
!! AAACAACGGATTAATCCCAC+CGG + chr5.2:71141824-71141843 None:intergenic 40.0%
!! ATAGTGGAAAAGGAGGGTTT+TGG - chr5.2:71141548-71141567 MS.gene76086:CDS 40.0%
!! CCGATTTGTGATAGTGGAAA+AGG - chr5.2:71141538-71141557 MS.gene76086:CDS 40.0%
!!! AGGGTTTTGGTTTAGGTTTG+AGG - chr5.2:71141561-71141580 MS.gene76086:CDS 40.0%
!!! CACGTTGAACATCGGTTTTA+GGG + chr5.2:71142059-71142078 None:intergenic 40.0%
!!! GAAAAGGAGGGTTTTGGTTT+AGG - chr5.2:71141554-71141573 MS.gene76086:CDS 40.0%
!!! GGTTTTGAACGAATTACCAG+CGG - chr5.2:71141504-71141523 MS.gene76086:CDS 40.0%
!!! GGTTTTGAGGAGAAGTATGA+AGG - chr5.2:71142411-71142430 MS.gene76086:CDS 40.0%
ATGTTGCAGCTTCTAATGGC+AGG - chr5.2:71142574-71142593 MS.gene76086:CDS 45.0%
CAAGCATCATAGTGAGGTCA+AGG + chr5.2:71141312-71141331 None:intergenic 45.0%
CACTTCCACGCCAAAATCAA+AGG - chr5.2:71141142-71141161 MS.gene76086:CDS 45.0%
CATCATAGTGAGGTCAAGGT+TGG + chr5.2:71141308-71141327 None:intergenic 45.0%
CGGAATGTTGCAGCTTCTAA+TGG - chr5.2:71142570-71142589 MS.gene76086:CDS 45.0%
GGAGACAACGATAGAAGGAT+GGG - chr5.2:71142128-71142147 MS.gene76086:CDS 45.0%
GTTGGATTGAGTAAGAAGGG+AGG + chr5.2:71141290-71141309 None:intergenic 45.0%
TGTGACAGAACCTCATGGTT+TGG - chr5.2:71142353-71142372 MS.gene76086:CDS 45.0%
TTGAGAGTGAGAGTGAGAGT+GGG + chr5.2:71140897-71140916 None:intergenic 45.0%
! ACAATGGGCTCCCAAAACAA+CGG + chr5.2:71141838-71141857 None:intergenic 45.0%
! AGAGAGGGAATGGTGCTTTT+CGG - chr5.2:71141734-71141753 MS.gene76086:CDS 45.0%
! GAACCTCATGGTTTGGATGA+TGG - chr5.2:71142360-71142379 MS.gene76086:CDS 45.0%
! GGAAATATGAGAAGGTGTGG+TGG + chr5.2:71140844-71140863 None:intergenic 45.0%
! TGGATCGGAGATTCCTTTTC+CGG - chr5.2:71141789-71141808 MS.gene76086:CDS 45.0%
!! ACTTGATGGTGAGTTTCGTG+TGG - chr5.2:71142095-71142114 MS.gene76086:CDS 45.0%
!! AGGATTTGGTGGGAACATGA+TGG + chr5.2:71141025-71141044 None:intergenic 45.0%
!! CGATAGTATTGGCGAATGTG+TGG + chr5.2:71141051-71141070 None:intergenic 45.0%
!! GAATCCCTTTGAAACAACGG+TGG + chr5.2:71142178-71142197 None:intergenic 45.0%
!! GATTTGGTGGGAACATGATG+GGG + chr5.2:71141023-71141042 None:intergenic 45.0%
!! GGATGGGTTTTGACAAGTTC+CGG - chr5.2:71142144-71142163 MS.gene76086:CDS 45.0%
!! GGATTTGGTGGGAACATGAT+GGG + chr5.2:71141024-71141043 None:intergenic 45.0%
!! TAGTATTGGCGAATGTGTGG+TGG + chr5.2:71141048-71141067 None:intergenic 45.0%
!! TGATTTTGGCGTGGAAGTGA+AGG + chr5.2:71141141-71141160 None:intergenic 45.0%
!!! GCACGTTGAACATCGGTTTT+AGG + chr5.2:71142060-71142079 None:intergenic 45.0%
AAACGCCCCAATGGCAACAA+TGG + chr5.2:71141854-71141873 None:intergenic 50.0%
AACGCCCCAATGGCAACAAT+GGG + chr5.2:71141853-71141872 None:intergenic 50.0%
AATTCTTGGTGGGGCCCATT+TGG + chr5.2:71140965-71140984 None:intergenic 50.0%
AGGAAGATCAAACGCCCCAA+TGG + chr5.2:71141863-71141882 None:intergenic 50.0%
AGTAGGGTGTGGTAAAAGGG+GGG + chr5.2:71141078-71141097 None:intergenic 50.0%
ATTCTTGGTGGGGCCCATTT+GGG + chr5.2:71140964-71140983 None:intergenic 50.0%
CGGAGACAACGATAGAAGGA+TGG - chr5.2:71142127-71142146 MS.gene76086:CDS 50.0%
CTCTTCCGCACGTTGAACAT+CGG + chr5.2:71142067-71142086 None:intergenic 50.0%
GAGACGGAGACAACGATAGA+AGG - chr5.2:71142123-71142142 MS.gene76086:CDS 50.0%
GAGAGTGGGAGTGAAGTGAA+GGG + chr5.2:71140883-71140902 None:intergenic 50.0%
GAGTAGGGTGTGGTAAAAGG+GGG + chr5.2:71141079-71141098 None:intergenic 50.0%
GGAGTAGGGTGTGGTAAAAG+GGG + chr5.2:71141080-71141099 None:intergenic 50.0%
GGGAGTAGGGTGTGGTAAAA+GGG + chr5.2:71141081-71141100 None:intergenic 50.0%
GTTGAGAGTGAGAGTGAGAG+TGG + chr5.2:71140898-71140917 None:intergenic 50.0%
GTTTCGTGTGGAAGCAGAGA+CGG - chr5.2:71142107-71142126 MS.gene76086:CDS 50.0%
TATTGGCGAATGTGTGGTGG+AGG + chr5.2:71141045-71141064 None:intergenic 50.0%
TGAAGGATGACACGTGTCCA+TGG + chr5.2:71141124-71141143 None:intergenic 50.0%
TGAGAGTGGGAGTGAAGTGA+AGG + chr5.2:71140884-71140903 None:intergenic 50.0%
! ATCGGAGATTCCTTTTCCGG+TGG - chr5.2:71141792-71141811 MS.gene76086:CDS 50.0%
! ATGTGTGGTGGAGGATTTGG+TGG + chr5.2:71141036-71141055 None:intergenic 50.0%
! CATGGTGGAGGACAATGGAA+GGG + chr5.2:71141106-71141125 None:intergenic 50.0%
! CCTTTTCCGGTGGTTTTCAC+CGG - chr5.2:71141802-71141821 MS.gene76086:CDS 50.0%
! CGAATGTGTGGTGGAGGATT+TGG + chr5.2:71141039-71141058 None:intergenic 50.0%
! GAGAGGGAATGGTGCTTTTC+GGG - chr5.2:71141735-71141754 MS.gene76086:CDS 50.0%
! TGTGTGGTGGAGGATTTGGT+GGG + chr5.2:71141035-71141054 None:intergenic 50.0%
!! ACATGATGGGGTTGGTTGGT+AGG + chr5.2:71141011-71141030 None:intergenic 50.0%
!! ACGATTGATGGCGAGCTTGT+TGG - chr5.2:71141769-71141788 MS.gene76086:CDS 50.0%
!! CATGATGGGGTTGGTTGGTA+GGG + chr5.2:71141010-71141029 None:intergenic 50.0%
!! GTTCGCCTTTGATTTTGGCG+TGG + chr5.2:71141150-71141169 None:intergenic 50.0%
!! TGATGGCGAGCTTGTTGGAT+CGG - chr5.2:71141774-71141793 MS.gene76086:CDS 50.0%
ACAATGGAAGGGTGGGGAGT+AGG + chr5.2:71141095-71141114 None:intergenic 55.0%
AGGATGACACGTGTCCATGG+TGG + chr5.2:71141121-71141140 None:intergenic 55.0%
ATCCCACCGGTGAAAACCAC+CGG + chr5.2:71141811-71141830 None:intergenic 55.0%
ATGACACGTGTCCATGGTGG+AGG + chr5.2:71141118-71141137 None:intergenic 55.0%
CAATGGAAGGGTGGGGAGTA+GGG + chr5.2:71141094-71141113 None:intergenic 55.0%
CCGGTGAAAACCACCGGAAA+AGG + chr5.2:71141805-71141824 None:intergenic 55.0%
CCTTCCATTGTCCTCCACCA+TGG - chr5.2:71141104-71141123 MS.gene76086:CDS 55.0%
GGAGCCCATTGTTGCCATTG+GGG - chr5.2:71141846-71141865 MS.gene76086:CDS 55.0%
GGGAGCCCATTGTTGCCATT+GGG - chr5.2:71141845-71141864 MS.gene76086:CDS 55.0%
GGGGAGTAGGGTGTGGTAAA+AGG + chr5.2:71141082-71141101 None:intergenic 55.0%
GTAGGGTGTGGTAAAAGGGG+GGG + chr5.2:71141077-71141096 None:intergenic 55.0%
GTGGAGGACAATGGAAGGGT+GGG + chr5.2:71141102-71141121 None:intergenic 55.0%
TGGAGGACAATGGAAGGGTG+GGG + chr5.2:71141101-71141120 None:intergenic 55.0%
TGGGAGCCCATTGTTGCCAT+TGG - chr5.2:71141844-71141863 MS.gene76086:CDS 55.0%
! CAGGTTGAGCGGTGCTTGTT+CGG + chr5.2:71141219-71141238 None:intergenic 55.0%
! CCATGGTGGAGGACAATGGA+AGG + chr5.2:71141107-71141126 None:intergenic 55.0%
! GGGAACATGATGGGGTTGGT+TGG + chr5.2:71141015-71141034 None:intergenic 55.0%
! GTGTCCATGGTGGAGGACAA+TGG + chr5.2:71141111-71141130 None:intergenic 55.0%
! TGGTGGGAACATGATGGGGT+TGG + chr5.2:71141019-71141038 None:intergenic 55.0%
! TTCCGGTGGTTTTCACCGGT+GGG - chr5.2:71141806-71141825 MS.gene76086:CDS 55.0%
! TTTCCGGTGGTTTTCACCGG+TGG - chr5.2:71141805-71141824 MS.gene76086:CDS 55.0%
!! AGGGGGGGTGTCGATAGTAT+TGG + chr5.2:71141062-71141081 None:intergenic 55.0%
GGTGGAGGACAATGGAAGGG+TGG + chr5.2:71141103-71141122 None:intergenic 60.0%
TGTTCGGAGAAGCTCGACGC+CGG + chr5.2:71141203-71141222 None:intergenic 60.0%
!! GATGGGGTTGGTTGGTAGGG+CGG + chr5.2:71141007-71141026 None:intergenic 60.0%
ACGACCGCATCGCCGCCTTA+TGG - chr5.2:71141173-71141192 MS.gene76086:CDS 65.0%
ATCGCCGCCTTATGGCTCGC+CGG - chr5.2:71141181-71141200 MS.gene76086:CDS 65.0%
CGAGCCATAAGGCGGCGATG+CGG + chr5.2:71141180-71141199 None:intergenic 65.0%
GAAGGGTGGGGAGTAGGGTG+TGG + chr5.2:71141089-71141108 None:intergenic 65.0%
TGGTGGGGCCCATTTGGGTG+AGG + chr5.2:71140959-71140978 None:intergenic 65.0%
!! GGGTTGGTTGGTAGGGCGGT+GGG + chr5.2:71141003-71141022 None:intergenic 65.0%
CTCGACGCCGGCGAGCCATA+AGG + chr5.2:71141191-71141210 None:intergenic 70.0%
GACGCCGGCGAGCCATAAGG+CGG + chr5.2:71141188-71141207 None:intergenic 70.0%
!! GGGGTTGGTTGGTAGGGCGG+TGG + chr5.2:71141004-71141023 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr5.2 gene 71140833 71142641 71140833 ID=MS.gene76086
chr5.2 mRNA 71140833 71142641 71140833 ID=MS.gene76086.t1;Parent=MS.gene76086
chr5.2 exon 71140833 71142641 71140833 ID=MS.gene76086.t1.exon1;Parent=MS.gene76086.t1
chr5.2 CDS 71140833 71142641 71140833 ID=cds.MS.gene76086.t1;Parent=MS.gene76086.t1
Gene Sequence

>MS.gene76086

ATGCAACTCCACCACACCTTCTCATATTTCCTCTTTCTATTCTTCATCCCTTCACTTCACTCCCACTCTCACTCTCACTCTCAACCAAACCATTACACAATCTCTCAAGAACAAACTCAAAAACCTCACCCAAATGGGCCCCACCAAGAATTCATAGAAGTAACATACCCACCGCCCTACCAACCAACCCCATCATGTTCCCACCAAATCCTCCACCACACATTCGCCAATACTATCGACACCCCCCCTTTTACCACACCCTACTCCCCACCCTTCCATTGTCCTCCACCATGGACACGTGTCATCCTTCACTTCCACGCCAAAATCAAAGGCGAACAATACGACCGCATCGCCGCCTTATGGCTCGCCGGCGTCGAGCTTCTCCGAACAAGCACCGCTCAACCTGATAATTCTAGAATCTTCTGGAATGTTCGTAAAGATATTACGAAATACACCTCCCTTCTTACTCAATCCAACCTTGACCTCACTATGATGCTTGAAAATATTGTTAACGCTGAATTCACCGGCGAATTTCAAATCACCGTTACTCTTTTGTATTATTACGACAAACACAAAAACTCCGTTAGGGTTCCGTTTAATCCAATTTCAAATTCAATTTCAAGATCAAGATCAAGGTCTTTGAGGAGTGAATTGAAGGTACCAGATTCTAGGGTTTTGAACGAATTACCAGCGGATTTGATTATTCCGATTTGTGATAGTGGAAAAGGAGGGTTTTGGTTTAGGTTTGAGGAAGAAAAGCAATTGAAGAAAAGAAGAATTCGAATTCCGCGGAATACTTACAAAGCAGTTATTGAATTGTATGTTTCTTTTCATGGAAATGATGAATTTTGGTATTCAAATCCTCCGAATTCGTATATTACGAGGAATGGTTTAGATACTGAGAGAGGGAATGGTGCTTTTCGGGAAGTTTATGTGACGATTGATGGCGAGCTTGTTGGATCGGAGATTCCTTTTCCGGTGGTTTTCACCGGTGGGATTAATCCGTTGTTTTGGGAGCCCATTGTTGCCATTGGGGCGTTTGATCTTCCTTCATATGATATCGAATTGACGCCATTTTTAGGGAAGATTCTTGATGGGAAAAGACATGTTTTTGGAATTGGGGTGACTAAAGGATTATCATTTTGGCTTGTGAATGCAAATTTGCATCTTTGGGTTGATCATGAATCATTTGTAGTTCGTGCGAATCGGGTTATTCATCATAACCCTAAAACCGATGTTCAACGTGCGGAAGAGTTTAAAAGACTTGATGGTGAGTTTCGTGTGGAAGCAGAGACGGAGACAACGATAGAAGGATGGGTTTTGACAAGTTCCGGTAACATAACCACCGTTGTTTCAAAGGGATTCAGTTTTAGGAATGTTATAAAGTTTAAAAGCAATGGAACTTATAAGATGGTTAAGCAGAAATTTAAAGCCAAAAAGAAGGTTAAGGTGTTTGATAATAGAGGTGAAATGATTTCCAAGTTGAAGGTTAAACGCAAGTATCCTTTAAGAGTTATTACTGTGACAGAACCTCATGGTTTGGATGATGGATATAAGCTTCTTACTGATTTATCTCATGGTTTTGAGGAGAAGTATGAAGGTAAGGGATTCATACATTCAGTTAGTAATGAACAGGAATCAAAGGGTTGGATTAATGTGATGGGTCATTCTGTTCTAGATGGTCATGCAAGTACTATGCAAAATTATAGTTATGTTGATAAGTTAAGTTGTTATAATCGGAATGTTGCAGCTTCTAATGGCAGGATTGTTGCTGACAAGTCAAATTTCATTTGTGAAAATGCCATGTAA

Protein sequence

>MS.gene76086.t1

MQLHHTFSYFLFLFFIPSLHSHSHSHSQPNHYTISQEQTQKPHPNGPHQEFIEVTYPPPYQPTPSCSHQILHHTFANTIDTPPFTTPYSPPFHCPPPWTRVILHFHAKIKGEQYDRIAALWLAGVELLRTSTAQPDNSRIFWNVRKDITKYTSLLTQSNLDLTMMLENIVNAEFTGEFQITVTLLYYYDKHKNSVRVPFNPISNSISRSRSRSLRSELKVPDSRVLNELPADLIIPICDSGKGGFWFRFEEEKQLKKRRIRIPRNTYKAVIELYVSFHGNDEFWYSNPPNSYITRNGLDTERGNGAFREVYVTIDGELVGSEIPFPVVFTGGINPLFWEPIVAIGAFDLPSYDIELTPFLGKILDGKRHVFGIGVTKGLSFWLVNANLHLWVDHESFVVRANRVIHHNPKTDVQRAEEFKRLDGEFRVEAETETTIEGWVLTSSGNITTVVSKGFSFRNVIKFKSNGTYKMVKQKFKAKKKVKVFDNRGEMISKLKVKRKYPLRVITVTEPHGLDDGYKLLTDLSHGFEEKYEGKGFIHSVSNEQESKGWINVMGHSVLDGHASTMQNYSYVDKLSCYNRNVAASNGRIVADKSNFICENAM