AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene76094

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene76094.t1 MTR_5g083260 98.821 424 5 0 1 424 4 427 0.0 880
MS.gene76094.t1 MTR_3g071650 74.365 433 102 5 1 424 1 433 0.0 658
MS.gene76094.t1 MTR_4g014440 51.289 349 164 3 80 423 62 409 1.53e-132 387
MS.gene76094.t1 MTR_7g070060 48.942 378 182 5 50 422 39 410 2.22e-132 387
MS.gene76094.t1 MTR_4g014430 52.770 343 159 2 76 418 104 443 6.47e-130 382
MS.gene76094.t1 MTR_8g463790 49.304 359 174 4 68 422 56 410 1.88e-128 377
MS.gene76094.t1 MTR_4g016940 48.986 345 174 2 78 421 84 427 3.07e-128 377
MS.gene76094.t1 MTR_3g070900 51.289 349 164 4 77 421 103 449 1.25e-126 374
MS.gene76094.t1 MTR_7g068920 42.143 420 234 3 10 421 3 421 5.36e-118 350
MS.gene76094.t1 MTR_5g082880 48.000 350 177 3 78 422 163 512 1.89e-117 352
MS.gene76094.t1 MTR_7g070060 50.847 295 139 3 133 422 15 308 3.01e-102 306
MS.gene76094.t1 MTR_7g070060 47.925 265 130 4 50 312 39 297 4.97e-86 265
MS.gene76094.t1 MTR_5g071350 36.675 379 207 9 61 423 40 401 9.27e-77 244
MS.gene76094.t1 MTR_3g464570 36.667 360 202 8 73 423 36 378 3.65e-76 242
MS.gene76094.t1 MTR_4g079700 34.351 393 225 9 29 421 4 363 2.60e-75 239
MS.gene76094.t1 MTR_2g091175 37.318 343 190 7 80 422 50 367 1.34e-74 238
MS.gene76094.t1 MTR_1g112210 38.329 347 186 10 80 421 59 382 1.88e-74 238
MS.gene76094.t1 MTR_5g033800 36.212 359 206 9 74 422 139 484 7.07e-74 239
MS.gene76094.t1 MTR_0136s0010 36.723 354 200 8 80 422 170 510 5.41e-73 238
MS.gene76094.t1 MTR_3g049330 35.127 353 203 8 72 422 23 351 1.64e-72 231
MS.gene76094.t1 MTR_1g050448 33.920 398 233 10 24 421 8 375 2.09e-72 232
MS.gene76094.t1 MTR_7g093450 37.255 357 194 9 80 422 248 588 2.12e-72 238
MS.gene76094.t1 MTR_1g112210 37.752 347 175 11 80 421 59 369 1.15e-71 230
MS.gene76094.t1 MTR_4g126950 36.857 350 201 8 80 421 109 446 3.32e-70 229
MS.gene76094.t1 MTR_7g094750 32.500 440 261 14 2 422 11 433 5.38e-70 228
MS.gene76094.t1 MTR_2g022560 36.901 355 197 11 78 419 95 435 2.98e-69 226
MS.gene76094.t1 MTR_2g015720 35.176 398 210 11 24 421 9 358 7.29e-69 222
MS.gene76094.t1 MTR_2g073510 36.286 350 192 8 74 418 27 350 1.15e-68 221
MS.gene76094.t1 MTR_7g109550 36.963 349 195 8 80 421 137 467 7.55e-68 223
MS.gene76094.t1 MTR_1g058380 34.916 358 205 9 78 422 53 395 8.90e-68 221
MS.gene76094.t1 MTR_5g034810 37.536 349 190 10 76 422 31 353 1.57e-67 219
MS.gene76094.t1 MTR_3g021060 36.103 349 189 10 78 421 44 363 7.88e-67 217
MS.gene76094.t1 MTR_5g059400 33.943 383 231 10 53 423 145 517 1.97e-66 221
MS.gene76094.t1 MTR_1g116130 33.943 383 231 10 53 423 145 517 1.97e-66 221
MS.gene76094.t1 MTR_4g088030 33.903 351 208 8 72 422 25 351 2.47e-66 216
MS.gene76094.t1 MTR_3g021090 36.207 348 188 10 78 420 29 347 2.50e-66 218
MS.gene76094.t1 MTR_4g121560 33.994 353 211 7 80 422 114 454 4.57e-66 218
MS.gene76094.t1 MTR_3g035830 35.530 349 191 10 78 421 29 348 1.05e-65 214
MS.gene76094.t1 MTR_8g069790 34.167 360 214 9 73 422 171 517 4.43e-64 214
MS.gene76094.t1 MTR_4g087730 33.908 348 206 8 75 422 40 363 2.25e-62 206
MS.gene76094.t1 MTR_2g073500 35.393 356 185 13 77 422 26 346 1.77e-60 200
MS.gene76094.t1 MTR_1g111010 32.951 349 194 11 78 422 30 342 8.52e-56 188
MS.gene76094.t1 MTR_8g093530 28.440 436 260 13 2 422 19 417 4.11e-55 189
MS.gene76094.t1 MTR_3g090120 29.609 358 219 8 76 422 125 460 8.49e-52 181
MS.gene76094.t1 MTR_3g464570 35.417 288 161 7 145 423 3 274 3.29e-51 174
MS.gene76094.t1 MTR_7g094750 30.982 326 198 10 2 310 11 326 9.80e-47 164
MS.gene76094.t1 MTR_5g033800 34.694 245 147 5 74 310 139 378 1.40e-44 159
MS.gene76094.t1 MTR_6g016875 31.111 360 219 10 78 421 62 408 1.94e-44 160
MS.gene76094.t1 MTR_6g016880 28.111 434 259 16 13 421 14 419 4.94e-41 151
MS.gene76094.t1 MTR_7g019120 30.423 355 221 11 80 421 79 420 6.72e-41 150
MS.gene76094.t1 MTR_8g027900 28.767 365 233 12 72 421 203 555 5.25e-40 150
MS.gene76094.t1 MTR_1g076690 27.638 398 255 16 40 418 184 567 3.28e-39 148
MS.gene76094.t1 MTR_8g093870 30.028 363 214 13 78 421 131 472 5.53e-37 140
MS.gene76094.t1 MTR_6g061710 27.731 357 232 14 78 418 165 511 1.89e-36 140
MS.gene76094.t1 MTR_6g007777 28.032 371 229 14 70 421 106 457 4.58e-36 138
MS.gene76094.t1 MTR_8g104970 29.428 367 219 15 77 421 117 465 7.74e-36 137
MS.gene76094.t1 MTR_2g016060 27.559 381 230 15 62 417 37 396 6.24e-35 134
MS.gene76094.t1 MTR_3g109840 27.465 426 273 14 12 418 4 412 9.98e-35 134
MS.gene76094.t1 MTR_5g035090 27.401 354 230 11 80 418 83 424 1.14e-34 134
MS.gene76094.t1 MTR_5g035150 28.177 362 223 12 77 417 82 427 3.22e-34 132
MS.gene76094.t1 MTR_5g035080 25.405 370 230 13 77 421 72 420 1.68e-32 127
MS.gene76094.t1 MTR_8g099300 26.479 355 231 12 80 417 74 415 3.96e-32 126
MS.gene76094.t1 MTR_7g033230 28.032 371 219 16 77 421 261 609 1.14e-31 127
MS.gene76094.t1 MTR_5g035070 28.571 357 224 12 80 418 87 430 1.85e-31 125
MS.gene76094.t1 MTR_7g033230 28.032 371 219 16 77 421 331 679 2.34e-31 127
MS.gene76094.t1 MTR_4g092830 27.273 363 217 16 80 417 48 388 2.80e-30 121
MS.gene76094.t1 MTR_6g016240 26.503 366 231 12 77 421 68 416 2.10e-28 116
MS.gene76094.t1 MTR_4g125060 27.704 379 202 16 78 421 130 471 3.04e-27 113
MS.gene76094.t1 MTR_4g125060 27.704 379 202 16 78 421 198 539 6.01e-27 113
MS.gene76094.t1 MTR_4g125060 27.704 379 202 16 78 421 169 510 6.24e-27 113
MS.gene76094.t1 MTR_7g019140 48.454 97 49 1 76 172 75 170 2.34e-26 104
MS.gene76094.t1 MTR_5g069320 27.243 301 145 10 127 414 147 386 3.93e-22 97.8
MS.gene76094.t1 MTR_5g035120 44.086 93 51 1 77 169 72 163 8.36e-21 89.4
MS.gene76094.t1 MTR_2g022580 36.134 119 66 4 140 249 1 118 3.23e-15 72.4
MS.gene76094.t1 MTR_3g021150 38.318 107 62 3 277 382 5 108 7.17e-13 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene76094.t1 AT2G40320 78.780 410 85 1 14 423 17 424 0.0 690
MS.gene76094.t1 AT3G11030 62.500 448 138 4 5 424 6 451 0.0 585
MS.gene76094.t1 AT5G01620 50.571 350 169 2 70 418 100 446 4.68e-130 382
MS.gene76094.t1 AT5G01620 50.571 350 169 2 70 418 100 446 4.68e-130 382
MS.gene76094.t1 AT5G01620 50.571 350 169 2 70 418 108 454 9.46e-130 382
MS.gene76094.t1 AT3G55990 52.722 349 159 3 78 422 138 484 7.54e-128 378
MS.gene76094.t1 AT5G01360 48.986 345 175 1 78 421 34 378 2.64e-127 373
MS.gene76094.t1 AT1G73140 44.444 378 193 3 46 422 45 406 2.98e-127 374
MS.gene76094.t1 AT5G01360 48.986 345 175 1 78 421 90 434 1.32e-126 373
MS.gene76094.t1 AT2G40150 50.959 365 164 4 70 421 58 420 6.68e-126 371
MS.gene76094.t1 AT2G38320 45.135 370 197 3 58 422 37 405 2.03e-117 349
MS.gene76094.t1 AT2G40160 40.580 414 230 7 20 423 18 425 1.87e-107 324
MS.gene76094.t1 AT2G40160 40.931 408 225 7 20 417 18 419 5.34e-107 323
MS.gene76094.t1 AT2G38320 47.500 320 162 3 108 422 4 322 4.05e-106 317
MS.gene76094.t1 AT3G12060 38.259 379 204 9 58 422 174 536 5.25e-82 262
MS.gene76094.t1 AT5G06700 38.547 358 192 10 78 422 253 595 1.68e-78 254
MS.gene76094.t1 AT1G78710 35.714 350 198 8 75 422 33 357 1.19e-75 240
MS.gene76094.t1 AT3G62390 36.898 374 204 11 65 423 117 473 9.61e-75 241
MS.gene76094.t1 AT5G20590 36.639 363 209 8 69 422 130 480 2.82e-74 240
MS.gene76094.t1 AT2G40160 39.465 299 167 5 20 310 18 310 3.62e-74 234
MS.gene76094.t1 AT3G14850 37.249 349 188 7 75 418 29 351 4.53e-73 233
MS.gene76094.t1 AT5G19160 34.186 430 239 14 17 419 30 442 1.64e-72 235
MS.gene76094.t1 AT2G30900 35.135 370 204 11 65 423 23 367 8.11e-72 230
MS.gene76094.t1 AT5G49340 35.501 369 218 9 65 422 83 442 1.14e-70 230
MS.gene76094.t1 AT5G58600 35.411 353 203 7 80 423 66 402 2.13e-70 228
MS.gene76094.t1 AT1G29050 34.870 347 202 6 75 421 56 378 2.88e-70 227
MS.gene76094.t1 AT2G42570 34.409 372 216 9 51 422 22 365 4.81e-70 226
MS.gene76094.t1 AT3G06080 32.118 439 247 12 12 419 25 443 5.69e-70 229
MS.gene76094.t1 AT2G34070 34.758 351 198 8 75 421 60 383 7.96e-70 226
MS.gene76094.t1 AT2G30010 35.052 388 215 10 51 423 33 398 1.80e-69 225
MS.gene76094.t1 AT2G31110 36.337 344 191 9 80 421 45 362 2.81e-69 224
MS.gene76094.t1 AT2G30010 35.052 388 215 10 51 423 76 441 4.08e-69 226
MS.gene76094.t1 AT1G60790 34.270 356 213 9 78 422 188 533 1.72e-67 224
MS.gene76094.t1 AT3G54260 36.283 339 196 8 80 417 51 370 2.28e-66 216
MS.gene76094.t1 AT5G06230 34.426 366 196 11 80 422 21 365 3.75e-61 202
MS.gene76094.t1 AT5G06230 34.426 366 196 11 80 422 62 406 1.13e-60 202
MS.gene76094.t1 AT1G48880 30.095 422 232 14 20 422 63 440 1.03e-56 193
MS.gene76094.t1 AT1G78710 31.034 348 164 8 75 422 26 297 8.69e-56 186
MS.gene76094.t1 AT3G11570 33.531 337 199 7 97 422 98 420 9.49e-54 185
MS.gene76094.t1 AT5G19160 33.866 313 188 8 17 314 30 338 3.62e-53 181
MS.gene76094.t1 AT3G62390 37.736 265 144 8 65 314 117 375 4.74e-51 177
MS.gene76094.t1 AT5G20590 37.450 251 144 5 69 310 130 376 2.39e-49 172
MS.gene76094.t1 AT3G06080 35.743 249 146 5 73 310 93 338 2.61e-49 171
MS.gene76094.t1 AT2G30900 35.271 258 145 8 65 312 23 268 1.49e-46 161
MS.gene76094.t1 AT2G31110 35.526 228 134 5 80 305 45 261 6.22e-45 157
MS.gene76094.t1 AT1G70230 29.609 358 221 11 75 421 74 411 1.05e-43 158
MS.gene76094.t1 AT5G58600 33.473 239 140 5 80 312 66 291 1.02e-42 152
MS.gene76094.t1 AT2G34070 32.364 275 156 7 151 421 1 249 2.70e-42 149
MS.gene76094.t1 AT3G28150 27.907 430 249 16 10 419 20 408 5.23e-42 153
MS.gene76094.t1 AT3G14850 34.066 273 150 6 151 418 1 248 5.75e-42 149
MS.gene76094.t1 AT5G15900 29.592 392 245 12 47 421 32 409 4.38e-41 151
MS.gene76094.t1 AT5G15900 29.592 392 245 12 47 421 51 428 4.73e-41 151
MS.gene76094.t1 AT5G06230 34.524 252 134 7 80 310 62 303 1.25e-40 147
MS.gene76094.t1 AT5G15890 29.248 359 220 10 77 421 184 522 2.99e-40 150
MS.gene76094.t1 AT3G02440 28.090 356 228 11 80 421 127 468 3.47e-39 147
MS.gene76094.t1 AT3G02440 28.090 356 228 11 80 421 135 476 5.24e-39 146
MS.gene76094.t1 AT5G64470 30.199 351 217 13 80 417 55 390 8.09e-38 142
MS.gene76094.t1 AT5G64020 29.301 372 213 16 80 421 57 408 1.18e-37 141
MS.gene76094.t1 AT5G64470 29.775 356 218 12 80 417 55 396 6.48e-37 139
MS.gene76094.t1 AT1G01430 29.661 354 224 12 80 417 99 443 6.69e-36 137
MS.gene76094.t1 AT4G25360 26.075 372 231 13 73 418 168 521 4.14e-35 136
MS.gene76094.t1 AT4G25360 26.075 372 231 13 73 418 168 521 4.14e-35 136
MS.gene76094.t1 AT4G23790 25.059 427 276 17 18 421 22 427 4.51e-35 135
MS.gene76094.t1 AT2G37720 28.609 381 223 17 63 421 129 482 5.71e-34 132
MS.gene76094.t1 AT2G14530 26.519 362 229 10 80 421 62 406 7.43e-34 131
MS.gene76094.t1 AT5G51640 26.902 368 226 15 77 418 135 485 2.38e-33 131
MS.gene76094.t1 AT4G01080 28.857 350 223 14 80 417 91 426 5.05e-33 129
MS.gene76094.t1 AT2G31110 33.621 232 127 8 192 421 8 214 7.14e-31 118
MS.gene76094.t1 AT5G20680 26.178 382 208 16 76 421 114 457 6.81e-30 120
MS.gene76094.t1 AT5G20680 26.178 382 208 16 76 421 208 551 1.21e-29 121
MS.gene76094.t1 AT5G20680 26.178 382 208 16 76 421 208 551 1.21e-29 121
MS.gene76094.t1 AT5G20680 26.178 382 208 16 76 421 208 551 1.21e-29 121
MS.gene76094.t1 AT5G20680 26.178 382 208 16 76 421 208 551 1.21e-29 121
MS.gene76094.t1 AT5G20680 26.178 382 208 16 76 421 190 533 1.35e-29 120
MS.gene76094.t1 AT4G11090 23.040 421 288 15 20 418 16 422 3.37e-27 113
MS.gene76094.t1 AT5G64470 28.358 268 177 9 80 337 55 317 1.13e-23 101
MS.gene76094.t1 AT5G64470 28.090 267 177 9 80 336 55 316 4.16e-23 99.4

Find 94 sgRNAs with CRISPR-Local

Find 186 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACCTGGTCTTCAAGATAAT+TGG 0.191574 5.2:+71279681 MS.gene76094:CDS
TTGGAAAGGTGTTGACATTT+TGG 0.194283 5.2:+71278579 MS.gene76094:CDS
GCTAATTGCTCTTTAGTTAA+AGG 0.201296 5.2:-71279620 None:intergenic
TAAATAAACATGGTAGAAAT+TGG 0.238597 5.2:+71278560 MS.gene76094:CDS
TGATTAATAATTCCACATAC+TGG 0.251655 5.2:+71279453 MS.gene76094:CDS
ATGCAACAATTGAGTTCTAT+TGG 0.254941 5.2:+71278458 MS.gene76094:CDS
TATTCAGTGGAAGGTGGGTT+TGG 0.278935 5.2:+71277475 MS.gene76094:CDS
ATCAAAGGTTTCCATGGATT+TGG 0.299044 5.2:-71277842 None:intergenic
CTAATTGCTCTTTAGTTAAA+GGG 0.317364 5.2:-71279619 None:intergenic
GAAGATTTCATGTGCATCTT+TGG 0.320970 5.2:+71277084 MS.gene76094:CDS
ATTCAGTGGAAGGTGGGTTT+GGG 0.324678 5.2:+71277476 MS.gene76094:CDS
GTGATGTTAAGAAATGTAAT+TGG 0.337450 5.2:-71279539 None:intergenic
TGGTATTCAACACTTATCTT+TGG 0.343420 5.2:+71278599 MS.gene76094:CDS
ACACAATCAGCATAGCTTAC+TGG 0.355015 5.2:-71279647 None:intergenic
CGGACAATGCTGTTGTTCAT+AGG 0.387335 5.2:+71278506 MS.gene76094:CDS
ACGACCTTTGCTTCTTAGAA+TGG 0.393423 5.2:-71277001 None:intergenic
CCAATGTTGGTAATCTTTGT+CGG 0.403476 5.2:-71277580 None:intergenic
CTATGAAAAGTATGCTTAGA+TGG 0.410597 5.2:+71278834 MS.gene76094:CDS
TCTGTCTTCCCCACCGCAAA+TGG 0.411531 5.2:-71277438 None:intergenic
TGGAAGGTGGGTTTGGGATG+AGG 0.415530 5.2:+71277482 MS.gene76094:CDS
TGCAACAATTGAGTTCTATT+GGG 0.419007 5.2:+71278459 MS.gene76094:CDS
TATTCAACACTTATCTTTGG+TGG 0.424745 5.2:+71278602 MS.gene76094:CDS
CACAATCAGCATAGCTTACT+GGG 0.425783 5.2:-71279646 None:intergenic
TCCATGGATTTGGCATCCTC+AGG 0.427436 5.2:-71277832 None:intergenic
ACTTATCTTTGGTGGATGAC+TGG 0.435500 5.2:+71278610 MS.gene76094:CDS
ATATGGCAGGAGTATAGATT+GGG 0.440954 5.2:+71279391 MS.gene76094:intron
TATATGGCAGGAGTATAGAT+TGG 0.441176 5.2:+71279390 MS.gene76094:intron
ATAGATTGGGGAGGTGAGCC+AGG 0.443479 5.2:+71279404 MS.gene76094:CDS
CAATGTTGGTAATCTTTGTC+GGG 0.457780 5.2:-71277579 None:intergenic
CACTCCGATTCCTCGTACAA+TGG 0.458569 5.2:-71277513 None:intergenic
GCTAGAAGGGTGAAAAGGTA+AGG 0.463485 5.2:-71277030 None:intergenic
TGAAAGCTAGAAGGGTGAAA+AGG 0.463624 5.2:-71277035 None:intergenic
GATTAATAATTCCACATACT+GGG 0.472858 5.2:+71279454 MS.gene76094:CDS
TGTGTACATTGGTGTTTACC+TGG 0.477328 5.2:+71279665 MS.gene76094:CDS
AAAAGTATAATGCAAGTGAT+TGG 0.480921 5.2:+71279491 MS.gene76094:CDS
TCTGATAGAATTGTAAGAAA+AGG 0.484458 5.2:+71278532 MS.gene76094:CDS
ACGACCATTGTACGAGGAAT+CGG 0.487168 5.2:+71277509 MS.gene76094:CDS
TGATATATTCAGTGGAAGGT+GGG 0.487169 5.2:+71277470 MS.gene76094:CDS
GGAAAGAGGATGATGTTTGT+TGG 0.493089 5.2:+71277751 MS.gene76094:CDS
GCAGATCAAGGTGCCATTTG+CGG 0.494304 5.2:+71277425 MS.gene76094:CDS
GTCAATTGTGGTTGTATGTA+CGG 0.495060 5.2:-71277537 None:intergenic
TCTTTGGTGGATGACTGGCT+TGG 0.496770 5.2:+71278615 MS.gene76094:CDS
TCATTGTAACAACTTCCTCC+TGG 0.501058 5.2:-71279422 None:intergenic
GAGTTTGATTCTAGAAGAAA+AGG 0.501756 5.2:-71278484 None:intergenic
AACTGAGGATGCTTATCGTA+TGG 0.502726 5.2:+71278811 MS.gene76094:CDS
GTGATATATTCAGTGGAAGG+TGG 0.512281 5.2:+71277469 MS.gene76094:CDS
GACAAATTCTTCTCCACACC+TGG 0.515054 5.2:+71277135 MS.gene76094:CDS
GAGTGAATCAAAGGTTTCCA+TGG 0.517129 5.2:-71277848 None:intergenic
ACTAGCATGTCACCTTCTCA+TGG 0.524451 5.2:+71278899 MS.gene76094:CDS
TTCCAATTATCTTGAAGACC+AGG 0.528264 5.2:-71279683 None:intergenic
CTAGAAGGGTGAAAAGGTAA+GGG 0.530481 5.2:-71277029 None:intergenic
AGAATGGAAGAAGGTGAGAA+TGG 0.531203 5.2:-71276985 None:intergenic
GCGGTGGGGAAGACAGAGGA+AGG 0.532473 5.2:+71277444 MS.gene76094:CDS
ACAATCAGAACCCCAGTATG+TGG 0.541987 5.2:-71279465 None:intergenic
TTGCTTCTTAGAATGGAAGA+AGG 0.542128 5.2:-71276994 None:intergenic
CTTCAATCTATAAGAAGCAA+TGG 0.542329 5.2:+71279594 MS.gene76094:CDS
GAAAACAGTGAGTGAATCAA+AGG 0.543530 5.2:-71277857 None:intergenic
TCCTGAGGATGCCAAATCCA+TGG 0.545590 5.2:+71277831 MS.gene76094:CDS
GAGGGTGAAGAAGCAGATCA+AGG 0.550519 5.2:+71277413 MS.gene76094:CDS
CAGGAATGAGTCTATGAAGA+AGG 0.551801 5.2:-71277813 None:intergenic
GAAGGGTGTGATATATTCAG+TGG 0.552431 5.2:+71277462 MS.gene76094:CDS
TATACTCACTTTCCATGAGA+AGG 0.556322 5.2:-71278911 None:intergenic
ATCAAGGTGCCATTTGCGGT+GGG 0.557278 5.2:+71277429 MS.gene76094:CDS
TAGAAGGGTGAAAAGGTAAG+GGG 0.565912 5.2:-71277028 None:intergenic
GATCAAGGTGCCATTTGCGG+TGG 0.568008 5.2:+71277428 MS.gene76094:CDS
CCGACAAAGATTACCAACAT+TGG 0.570402 5.2:+71277580 MS.gene76094:CDS
AACAATGGACTCACCAGGTG+TGG 0.570501 5.2:-71277148 None:intergenic
GTGTGGAGAAGAATTTGTCT+TGG 0.571094 5.2:-71277131 None:intergenic
TTGAAACACTACGTGGAAAG+AGG 0.579791 5.2:+71277737 MS.gene76094:CDS
ATTAATAATTCCACATACTG+GGG 0.584467 5.2:+71279455 MS.gene76094:CDS
TCTTCCATTCTAAGAAGCAA+AGG 0.595126 5.2:+71276997 MS.gene76094:CDS
ACAAAGATTACCAACATTGG+AGG 0.598469 5.2:+71277583 MS.gene76094:CDS
ATGGAAGAAGGTGAGAATGG+TGG 0.608866 5.2:-71276982 None:intergenic
GTTGGAGACTCTCTCAATCG+TGG 0.612428 5.2:+71277769 MS.gene76094:CDS
GTGGTTGCCACCTCCAATGT+TGG 0.612456 5.2:-71277593 None:intergenic
AAACATGGTAGAAATTGGAA+AGG 0.614486 5.2:+71278565 MS.gene76094:CDS
AAGATTACCAACATTGGAGG+TGG 0.615305 5.2:+71277586 MS.gene76094:CDS
TATGAAAAGTATGCTTAGAT+GGG 0.615716 5.2:+71278835 MS.gene76094:CDS
GGTGTGATATATTCAGTGGA+AGG 0.619090 5.2:+71277466 MS.gene76094:CDS
TCAAGGTGCCATTTGCGGTG+GGG 0.620684 5.2:+71277430 MS.gene76094:CDS
TATGGCAGGAGTATAGATTG+GGG 0.621719 5.2:+71279392 MS.gene76094:intron
CATTGGAGGTGGCAACCACA+CGG 0.642871 5.2:+71277597 MS.gene76094:CDS
AAAGTATGCTTAGATGGGTG+AGG 0.645663 5.2:+71278840 MS.gene76094:CDS
GATTGTCACAATTTCAACTG+AGG 0.649875 5.2:+71278796 MS.gene76094:CDS
TCTTCATAGACTCATTCCTG+AGG 0.655484 5.2:+71277816 MS.gene76094:CDS
GCTATGCTGATTGTGTACAT+TGG 0.671303 5.2:+71279654 MS.gene76094:CDS
AAAGGTTCAATAAATAAACA+TGG 0.682166 5.2:+71278550 MS.gene76094:CDS
GGCAGGAGTATAGATTGGGG+AGG 0.697427 5.2:+71279395 MS.gene76094:intron
TTAGGAAGATCGCAACCGTG+TGG 0.699752 5.2:-71277612 None:intergenic
CGGTGGGGAAGACAGAGGAA+GGG 0.705520 5.2:+71277445 MS.gene76094:CDS
GATTGGGGAGGTGAGCCAGG+AGG 0.708567 5.2:+71279407 MS.gene76094:CDS
ATTTGCGGTGGGGAAGACAG+AGG 0.711107 5.2:+71277440 MS.gene76094:CDS
GGATGCACGACCATTGTACG+AGG 0.728129 5.2:+71277503 MS.gene76094:CDS
TTGATGCTTGAAACACTACG+TGG 0.805901 5.2:+71277730 MS.gene76094:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACAAAAATAATTATATTTAG+TGG - chr5.2:71278330-71278349 None:intergenic 10.0%
!! ATTTAAATTGATCAATAATA+TGG + chr5.2:71279028-71279047 MS.gene76094:intron 10.0%
!! TATTATTGATCAATTTAAAT+AGG - chr5.2:71279028-71279047 None:intergenic 10.0%
!!! AAAATTGTAGATTTTTTTTA+AGG - chr5.2:71279127-71279146 None:intergenic 10.0%
!!! AAATTGTAGATTTTTTTTAA+GGG - chr5.2:71279126-71279145 None:intergenic 10.0%
!!! ATAAGAAAAAATTCAAATTT+TGG - chr5.2:71279297-71279316 None:intergenic 10.0%
!!! TAAAAAAAATCTACAATTTT+GGG + chr5.2:71279127-71279146 MS.gene76094:intron 10.0%
!!! TAATTTTCAAATAAGTAAAA+TGG - chr5.2:71278712-71278731 None:intergenic 10.0%
!!! TTAAAAAAAATCTACAATTT+TGG + chr5.2:71279126-71279145 MS.gene76094:intron 10.0%
!! AAGTCTAAAAAAATTGAAAA+GGG - chr5.2:71278750-71278769 None:intergenic 15.0%
!! CTAATATTTCAACAAATATA+TGG + chr5.2:71279374-71279393 MS.gene76094:intron 15.0%
!! TGAAAATCAACAATAAAAAA+TGG - chr5.2:71278418-71278437 None:intergenic 15.0%
!! TTAAAATCTTATGAATATGT+CGG - chr5.2:71277271-71277290 None:intergenic 15.0%
!!! AATTGTAGATTTTTTTTAAG+GGG - chr5.2:71279125-71279144 None:intergenic 15.0%
!!! TTTTGTATTTTGATTTGAAT+TGG + chr5.2:71277349-71277368 MS.gene76094:intron 15.0%
!! AAAGGTTCAATAAATAAACA+TGG + chr5.2:71278550-71278569 MS.gene76094:CDS 20.0%
!! AGTTAATTATAAGAGTGAAT+CGG + chr5.2:71278063-71278082 MS.gene76094:intron 20.0%
!! CAAATAAGTAAAATGGAAAA+GGG - chr5.2:71278705-71278724 None:intergenic 20.0%
!! CAAGTCTAAAAAAATTGAAA+AGG - chr5.2:71278751-71278770 None:intergenic 20.0%
!! CATCATATAAACCATAAAAA+AGG - chr5.2:71277328-71277347 None:intergenic 20.0%
!! TAAAATCTTATGAATATGTC+GGG - chr5.2:71277270-71277289 None:intergenic 20.0%
!! TAAATAAACATGGTAGAAAT+TGG + chr5.2:71278560-71278579 MS.gene76094:CDS 20.0%
!! TCAAATAAGTAAAATGGAAA+AGG - chr5.2:71278706-71278725 None:intergenic 20.0%
!! TGAATAGATTGATAAAAGAA+CGG + chr5.2:71278022-71278041 MS.gene76094:intron 20.0%
!! TTCATAACAATAATGAAGAT+CGG - chr5.2:71277909-71277928 None:intergenic 20.0%
!! TTCATTATTGTTATGAATGA+TGG + chr5.2:71277912-71277931 MS.gene76094:intron 20.0%
!!! AGTATATTATGCCTTTTTTA+TGG + chr5.2:71277314-71277333 MS.gene76094:intron 20.0%
!!! CTTTTCAATTTTTTTAGACT+TGG + chr5.2:71278749-71278768 MS.gene76094:intron 20.0%
! AAAAAGAATGAAAGCTAGAA+GGG - chr5.2:71277046-71277065 None:intergenic 25.0%
! AAAATCTTATGAATATGTCG+GGG - chr5.2:71277269-71277288 None:intergenic 25.0%
! ACTTGTTTGAATAGAAAAGA+GGG - chr5.2:71278661-71278680 None:intergenic 25.0%
! ATTAATAATTCCACATACTG+GGG + chr5.2:71279455-71279474 MS.gene76094:CDS 25.0%
! CTAATTGCTCTTTAGTTAAA+GGG - chr5.2:71279622-71279641 None:intergenic 25.0%
! GAAATATTAGAACTTAGAAG+TGG - chr5.2:71279364-71279383 None:intergenic 25.0%
! GAATAGATTGATAAAAGAAC+GGG + chr5.2:71278023-71278042 MS.gene76094:intron 25.0%
! GATTAATAATTCCACATACT+GGG + chr5.2:71279454-71279473 MS.gene76094:CDS 25.0%
! GTGATGTTAAGAAATGTAAT+TGG - chr5.2:71279542-71279561 None:intergenic 25.0%
! TAAATAAACGACACTTACTT+AGG - chr5.2:71277633-71277652 None:intergenic 25.0%
! TATTTCAACAAATATATGGC+AGG + chr5.2:71279378-71279397 MS.gene76094:intron 25.0%
! TCTGATAGAATTGTAAGAAA+AGG + chr5.2:71278532-71278551 MS.gene76094:CDS 25.0%
! TGATTAATAATTCCACATAC+TGG + chr5.2:71279453-71279472 MS.gene76094:CDS 25.0%
! TTCACTTTACCGTAATAATT+TGG + chr5.2:71278127-71278146 MS.gene76094:intron 25.0%
!! AAAAGTATAATGCAAGTGAT+TGG + chr5.2:71279491-71279510 MS.gene76094:CDS 25.0%
!! AACTTGTTTGAATAGAAAAG+AGG - chr5.2:71278662-71278681 None:intergenic 25.0%
!! AATACCAAACCATACAATTT+TGG + chr5.2:71279098-71279117 MS.gene76094:intron 25.0%
!! ATTATGTTGTGTTGTGTTTT+GGG + chr5.2:71277372-71277391 MS.gene76094:intron 25.0%
!! CTTTTTGTTACTATTCTCTA+TGG + chr5.2:71277060-71277079 MS.gene76094:CDS 25.0%
!! TATGAAAAGTATGCTTAGAT+GGG + chr5.2:71278835-71278854 MS.gene76094:CDS 25.0%
!! TGATTTTCATGTGTTTAATC+AGG + chr5.2:71278429-71278448 MS.gene76094:intron 25.0%
!!! GTTTTAATTATAATAGGGAC+TGG - chr5.2:71279192-71279211 None:intergenic 25.0%
!!! TGTAGCATTTTTTGAAACAA+TGG - chr5.2:71277166-71277185 None:intergenic 25.0%
!!! TTTTCTTCTAGAATCAAACT+CGG + chr5.2:71278486-71278505 MS.gene76094:CDS 25.0%
!!! TTTTGCATCAAAAAGTATAG+AGG + chr5.2:71277204-71277223 MS.gene76094:intron 25.0%
AAACATGGTAGAAATTGGAA+AGG + chr5.2:71278565-71278584 MS.gene76094:CDS 30.0%
AATCAACTAGAGTTAGTTGA+TGG - chr5.2:71278109-71278128 None:intergenic 30.0%
ATGCAACAATTGAGTTCTAT+TGG + chr5.2:71278458-71278477 MS.gene76094:CDS 30.0%
CAAAAAGAATGAAAGCTAGA+AGG - chr5.2:71277047-71277066 None:intergenic 30.0%
CATTGAATAAGCGATGTATA+TGG - chr5.2:71279272-71279291 None:intergenic 30.0%
CTTCAATCTATAAGAAGCAA+TGG + chr5.2:71279594-71279613 MS.gene76094:CDS 30.0%
GCAACAATGTTAAAACTCTT+AGG - chr5.2:71278233-71278252 None:intergenic 30.0%
GCTAATTGCTCTTTAGTTAA+AGG - chr5.2:71279623-71279642 None:intergenic 30.0%
TAATTATAATAGGGACTGGA+GGG - chr5.2:71279188-71279207 None:intergenic 30.0%
TATTCAACACTTATCTTTGG+TGG + chr5.2:71278602-71278621 MS.gene76094:CDS 30.0%
TGCAACAATTGAGTTCTATT+GGG + chr5.2:71278459-71278478 MS.gene76094:CDS 30.0%
TGGTATTCAACACTTATCTT+TGG + chr5.2:71278599-71278618 MS.gene76094:CDS 30.0%
TTAATTATAATAGGGACTGG+AGG - chr5.2:71279189-71279208 None:intergenic 30.0%
TTCTTATAATAGTGAGCAGA+TGG + chr5.2:71279310-71279329 MS.gene76094:intron 30.0%
TTGATAAAAGAACGGGATAA+TGG + chr5.2:71278030-71278049 MS.gene76094:intron 30.0%
! CTATGAAAAGTATGCTTAGA+TGG + chr5.2:71278834-71278853 MS.gene76094:CDS 30.0%
! GAGTTTGATTCTAGAAGAAA+AGG - chr5.2:71278487-71278506 None:intergenic 30.0%
! GATTATGTTGTGTTGTGTTT+TGG + chr5.2:71277371-71277390 MS.gene76094:intron 30.0%
! GTTATGAATGATGGAATCAT+AGG + chr5.2:71277921-71277940 MS.gene76094:intron 30.0%
! TGGTTTGCACCAAATTATTA+CGG - chr5.2:71278139-71278158 None:intergenic 30.0%
! TTATGTTGTGTTGTGTTTTG+GGG + chr5.2:71277373-71277392 MS.gene76094:intron 30.0%
!! AAATCATAAGAGTATTCGTG+TGG + chr5.2:71277973-71277992 MS.gene76094:intron 30.0%
!! AATCATAAGAGTATTCGTGT+GGG + chr5.2:71277974-71277993 MS.gene76094:intron 30.0%
!! AATTGACTTGCCAAAAACAT+GGG + chr5.2:71277553-71277572 MS.gene76094:CDS 30.0%
!!! AAGAAGACTCTAGTTTTCTT+TGG - chr5.2:71278878-71278897 None:intergenic 30.0%
AAATAGGCTAATGTGACTTG+AGG - chr5.2:71279012-71279031 None:intergenic 35.0%
ACAAAGATTACCAACATTGG+AGG + chr5.2:71277583-71277602 MS.gene76094:CDS 35.0%
ATCAAAGGTTTCCATGGATT+TGG - chr5.2:71277845-71277864 None:intergenic 35.0%
GAAAACAGTGAGTGAATCAA+AGG - chr5.2:71277860-71277879 None:intergenic 35.0%
GAAGATTTCATGTGCATCTT+TGG + chr5.2:71277084-71277103 MS.gene76094:CDS 35.0%
GATTGTCACAATTTCAACTG+AGG + chr5.2:71278796-71278815 MS.gene76094:CDS 35.0%
GGGTGAATTATGAAAAGAGA+GGG + chr5.2:71277395-71277414 MS.gene76094:intron 35.0%
GTCAATTGTGGTTGTATGTA+CGG - chr5.2:71277540-71277559 None:intergenic 35.0%
TAAAGATCATAGTGATCAGC+AGG + chr5.2:71277946-71277965 MS.gene76094:intron 35.0%
TATACTCACTTTCCATGAGA+AGG - chr5.2:71278914-71278933 None:intergenic 35.0%
TGATATATTCAGTGGAAGGT+GGG + chr5.2:71277470-71277489 MS.gene76094:CDS 35.0%
TTAAGGGGTCCAAAATTGTA+TGG - chr5.2:71279110-71279129 None:intergenic 35.0%
TTCCAATTATCTTGAAGACC+AGG - chr5.2:71279686-71279705 None:intergenic 35.0%
TTGCTTCTTAGAATGGAAGA+AGG - chr5.2:71276997-71277016 None:intergenic 35.0%
! ATATGGCAGGAGTATAGATT+GGG + chr5.2:71279391-71279410 MS.gene76094:intron 35.0%
! GTGTGTATATTTGAGACTAG+AGG + chr5.2:71278348-71278367 MS.gene76094:intron 35.0%
! TACCTGGTCTTCAAGATAAT+TGG + chr5.2:71279681-71279700 MS.gene76094:CDS 35.0%
! TATATGGCAGGAGTATAGAT+TGG + chr5.2:71279390-71279409 MS.gene76094:intron 35.0%
! TCTTCCATTCTAAGAAGCAA+AGG + chr5.2:71276997-71277016 MS.gene76094:CDS 35.0%
!! ACTAGAGTTAGTTGATGGTT+AGG - chr5.2:71278104-71278123 None:intergenic 35.0%
!! CAATGTTGGTAATCTTTGTC+GGG - chr5.2:71277582-71277601 None:intergenic 35.0%
!! CAATTGACTTGCCAAAAACA+TGG + chr5.2:71277552-71277571 MS.gene76094:CDS 35.0%
!! CCAATGTTGGTAATCTTTGT+CGG - chr5.2:71277583-71277602 None:intergenic 35.0%
!! TATGTTGTGTTGTGTTTTGG+GGG + chr5.2:71277374-71277393 MS.gene76094:intron 35.0%
!!! TGTTTTTGGCAAGTCAATTG+TGG - chr5.2:71277552-71277571 None:intergenic 35.0%
!!! TTGGAAAGGTGTTGACATTT+TGG + chr5.2:71278579-71278598 MS.gene76094:CDS 35.0%
AAAGTATGCTTAGATGGGTG+AGG + chr5.2:71278840-71278859 MS.gene76094:CDS 40.0%
AACTGAGGATGCTTATCGTA+TGG + chr5.2:71278811-71278830 MS.gene76094:CDS 40.0%
AAGATTACCAACATTGGAGG+TGG + chr5.2:71277586-71277605 MS.gene76094:CDS 40.0%
ACACAATCAGCATAGCTTAC+TGG - chr5.2:71279650-71279669 None:intergenic 40.0%
ACGACCTTTGCTTCTTAGAA+TGG - chr5.2:71277004-71277023 None:intergenic 40.0%
AGAATGGAAGAAGGTGAGAA+TGG - chr5.2:71276988-71277007 None:intergenic 40.0%
CACAATCAGCATAGCTTACT+GGG - chr5.2:71279649-71279668 None:intergenic 40.0%
CAGGAATGAGTCTATGAAGA+AGG - chr5.2:71277816-71277835 None:intergenic 40.0%
CCGACAAAGATTACCAACAT+TGG + chr5.2:71277580-71277599 MS.gene76094:CDS 40.0%
CTAGAAGGGTGAAAAGGTAA+GGG - chr5.2:71277032-71277051 None:intergenic 40.0%
GAGTGAATCAAAGGTTTCCA+TGG - chr5.2:71277851-71277870 None:intergenic 40.0%
GGAAAGAGGATGATGTTTGT+TGG + chr5.2:71277751-71277770 MS.gene76094:CDS 40.0%
GGGGTGAATTATGAAAAGAG+AGG + chr5.2:71277394-71277413 MS.gene76094:intron 40.0%
GGGTCCAAAATTGTATGGTT+TGG - chr5.2:71279105-71279124 None:intergenic 40.0%
GGTGTGATATATTCAGTGGA+AGG + chr5.2:71277466-71277485 MS.gene76094:CDS 40.0%
GTGATATATTCAGTGGAAGG+TGG + chr5.2:71277469-71277488 MS.gene76094:CDS 40.0%
GTGTGGAGAAGAATTTGTCT+TGG - chr5.2:71277134-71277153 None:intergenic 40.0%
TAGAAGGGTGAAAAGGTAAG+GGG - chr5.2:71277031-71277050 None:intergenic 40.0%
TCATTGTAACAACTTCCTCC+TGG - chr5.2:71279425-71279444 None:intergenic 40.0%
TCTTCATAGACTCATTCCTG+AGG + chr5.2:71277816-71277835 MS.gene76094:CDS 40.0%
TGAAAGCTAGAAGGGTGAAA+AGG - chr5.2:71277038-71277057 None:intergenic 40.0%
TTGAAACACTACGTGGAAAG+AGG + chr5.2:71277737-71277756 MS.gene76094:CDS 40.0%
TTGATGCTTGAAACACTACG+TGG + chr5.2:71277730-71277749 MS.gene76094:CDS 40.0%
! ACTCACTGTTTTCACAGCAA+AGG + chr5.2:71277867-71277886 MS.gene76094:CDS 40.0%
! ACTTATCTTTGGTGGATGAC+TGG + chr5.2:71278610-71278629 MS.gene76094:CDS 40.0%
! GAAGGGTGTGATATATTCAG+TGG + chr5.2:71277462-71277481 MS.gene76094:CDS 40.0%
! GCTATGCTGATTGTGTACAT+TGG + chr5.2:71279654-71279673 MS.gene76094:CDS 40.0%
! TATGGCAGGAGTATAGATTG+GGG + chr5.2:71279392-71279411 MS.gene76094:intron 40.0%
! TGTGTACATTGGTGTTTACC+TGG + chr5.2:71279665-71279684 MS.gene76094:CDS 40.0%
! TTTGAAACAATGGACTCACC+AGG - chr5.2:71277156-71277175 None:intergenic 40.0%
!! ATGTTGTGTTGTGTTTTGGG+GGG + chr5.2:71277375-71277394 MS.gene76094:intron 40.0%
ACAATCAGAACCCCAGTATG+TGG - chr5.2:71279468-71279487 None:intergenic 45.0%
ACGACCATTGTACGAGGAAT+CGG + chr5.2:71277509-71277528 MS.gene76094:CDS 45.0%
ACTAGCATGTCACCTTCTCA+TGG + chr5.2:71278899-71278918 MS.gene76094:CDS 45.0%
AGACTAATCCTCGAACCTTG+TGG + chr5.2:71278183-71278202 MS.gene76094:intron 45.0%
ATGGAAGAAGGTGAGAATGG+TGG - chr5.2:71276985-71277004 None:intergenic 45.0%
CGGACAATGCTGTTGTTCAT+AGG + chr5.2:71278506-71278525 MS.gene76094:CDS 45.0%
GAACCTTGTGGGACTCAAAT+GGG + chr5.2:71278195-71278214 MS.gene76094:intron 45.0%
GACAAATTCTTCTCCACACC+TGG + chr5.2:71277135-71277154 MS.gene76094:CDS 45.0%
GACTAATCCTCGAACCTTGT+GGG + chr5.2:71278184-71278203 MS.gene76094:intron 45.0%
GCGAGTTCGAACTCTCTTAT+GGG - chr5.2:71277245-71277264 None:intergenic 45.0%
GCTAGAAGGGTGAAAAGGTA+AGG - chr5.2:71277033-71277052 None:intergenic 45.0%
! ATTCAGTGGAAGGTGGGTTT+GGG + chr5.2:71277476-71277495 MS.gene76094:CDS 45.0%
! TATTCAGTGGAAGGTGGGTT+TGG + chr5.2:71277475-71277494 MS.gene76094:CDS 45.0%
!! ACTGGAGGGTGTTGCTAATT+TGG - chr5.2:71279174-71279193 None:intergenic 45.0%
!! CTGGAGGGTGTTGCTAATTT+GGG - chr5.2:71279173-71279192 None:intergenic 45.0%
!! TGGAGGGTGTTGCTAATTTG+GGG - chr5.2:71279172-71279191 None:intergenic 45.0%
!! TAATTAAAACTTAATTATTT+AGG + chr5.2:71279202-71279221 MS.gene76094:intron 5.0%
!!! AATTAAGTTTTAATTATAAT+AGG - chr5.2:71279198-71279217 None:intergenic 5.0%
!!! ATTAAGTTTTAATTATAATA+GGG - chr5.2:71279197-71279216 None:intergenic 5.0%
CACTCCGATTCCTCGTACAA+TGG - chr5.2:71277516-71277535 None:intergenic 50.0%
CGAACCTTGTGGGACTCAAA+TGG + chr5.2:71278194-71278213 MS.gene76094:intron 50.0%
CGCGAGTTCGAACTCTCTTA+TGG - chr5.2:71277246-71277265 None:intergenic 50.0%
GAGGGTGAAGAAGCAGATCA+AGG + chr5.2:71277413-71277432 MS.gene76094:CDS 50.0%
GTTGGAGACTCTCTCAATCG+TGG + chr5.2:71277769-71277788 MS.gene76094:CDS 50.0%
TCCATGGATTTGGCATCCTC+AGG - chr5.2:71277835-71277854 None:intergenic 50.0%
TCCTGAGGATGCCAAATCCA+TGG + chr5.2:71277831-71277850 MS.gene76094:CDS 50.0%
TTAGGAAGATCGCAACCGTG+TGG - chr5.2:71277615-71277634 None:intergenic 50.0%
TTAGTCTATGCAGTTGCGCG+CGG - chr5.2:71278170-71278189 None:intergenic 50.0%
TTTGAGTCCCACAAGGTTCG+AGG - chr5.2:71278194-71278213 None:intergenic 50.0%
! AACAATGGACTCACCAGGTG+TGG - chr5.2:71277151-71277170 None:intergenic 50.0%
! TCTTTGGTGGATGACTGGCT+TGG + chr5.2:71278615-71278634 MS.gene76094:CDS 50.0%
! TGTCGGGTCTCCCATGTTTT+TGG - chr5.2:71277566-71277585 None:intergenic 50.0%
!! ATCAAGGTGCCATTTGCGGT+GGG + chr5.2:71277429-71277448 MS.gene76094:CDS 50.0%
!! GCAGATCAAGGTGCCATTTG+CGG + chr5.2:71277425-71277444 MS.gene76094:CDS 50.0%
AGTTGCGCGCGGAGGATATT+TGG - chr5.2:71278159-71278178 None:intergenic 55.0%
ATAGATTGGGGAGGTGAGCC+AGG + chr5.2:71279404-71279423 MS.gene76094:CDS 55.0%
ATTTGCGGTGGGGAAGACAG+AGG + chr5.2:71277440-71277459 MS.gene76094:CDS 55.0%
CATTGGAGGTGGCAACCACA+CGG + chr5.2:71277597-71277616 MS.gene76094:CDS 55.0%
CCTTGTGGGACTCAAATGGG+CGG + chr5.2:71278198-71278217 MS.gene76094:intron 55.0%
GGATGCACGACCATTGTACG+AGG + chr5.2:71277503-71277522 MS.gene76094:CDS 55.0%
GTGGTTGCCACCTCCAATGT+TGG - chr5.2:71277596-71277615 None:intergenic 55.0%
TCTGTCTTCCCCACCGCAAA+TGG - chr5.2:71277441-71277460 None:intergenic 55.0%
! GGCAGGAGTATAGATTGGGG+AGG + chr5.2:71279395-71279414 MS.gene76094:intron 55.0%
! TGGAAGGTGGGTTTGGGATG+AGG + chr5.2:71277482-71277501 MS.gene76094:CDS 55.0%
!! GATCAAGGTGCCATTTGCGG+TGG + chr5.2:71277428-71277447 MS.gene76094:CDS 55.0%
!! TCAAGGTGCCATTTGCGGTG+GGG + chr5.2:71277430-71277449 MS.gene76094:CDS 55.0%
CCGCCCATTTGAGTCCCACA+AGG - chr5.2:71278201-71278220 None:intergenic 60.0%
CGGTGGGGAAGACAGAGGAA+GGG + chr5.2:71277445-71277464 MS.gene76094:CDS 60.0%
GATTGGGGAGGTGAGCCAGG+AGG + chr5.2:71279407-71279426 MS.gene76094:CDS 65.0%
GCGGTGGGGAAGACAGAGGA+AGG + chr5.2:71277444-71277463 MS.gene76094:CDS 65.0%
GTCTATGCAGTTGCGCGCGG+AGG - chr5.2:71278167-71278186 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr5.2 gene 71276976 71279739 71276976 ID=MS.gene76094
chr5.2 mRNA 71276976 71279739 71276976 ID=MS.gene76094.t1;Parent=MS.gene76094
chr5.2 exon 71276976 71277156 71276976 ID=MS.gene76094.t1.exon1;Parent=MS.gene76094.t1
chr5.2 CDS 71276976 71277156 71276976 ID=cds.MS.gene76094.t1;Parent=MS.gene76094.t1
chr5.2 exon 71277412 71277634 71277412 ID=MS.gene76094.t1.exon2;Parent=MS.gene76094.t1
chr5.2 CDS 71277412 71277634 71277412 ID=cds.MS.gene76094.t1;Parent=MS.gene76094.t1
chr5.2 exon 71277717 71277888 71277717 ID=MS.gene76094.t1.exon3;Parent=MS.gene76094.t1
chr5.2 CDS 71277717 71277888 71277717 ID=cds.MS.gene76094.t1;Parent=MS.gene76094.t1
chr5.2 exon 71278451 71278650 71278451 ID=MS.gene76094.t1.exon4;Parent=MS.gene76094.t1
chr5.2 CDS 71278451 71278650 71278451 ID=cds.MS.gene76094.t1;Parent=MS.gene76094.t1
chr5.2 exon 71278766 71278924 71278766 ID=MS.gene76094.t1.exon5;Parent=MS.gene76094.t1
chr5.2 CDS 71278766 71278924 71278766 ID=cds.MS.gene76094.t1;Parent=MS.gene76094.t1
chr5.2 exon 71279400 71279739 71279400 ID=MS.gene76094.t1.exon6;Parent=MS.gene76094.t1
chr5.2 CDS 71279400 71279739 71279400 ID=cds.MS.gene76094.t1;Parent=MS.gene76094.t1
Gene Sequence

>MS.gene76094

ATGAAGCCACCATTCTCACCTTCTTCCATTCTAAGAAGCAAAGGTCGTTTCTCCCCTTACCTTTTCACCCTTCTAGCTTTCATTCTTTTTGTTACTATTCTCTATGGTGAAGATTTCATGTGCATCTTTGGTGAACAACTCTATAACTACTCTAACCAAGACAAATTCTTCTCCACACCTGGTGAGTCCATTGTTTCAAAAAATGCTACAATTATTTTTATTTTTATTTTTTGCATCAAAAAGTATAGAGGATATATTCATACATACCCATAAGAGAGTTCGAACTCGCGCCCCGACATATTCATAAGATTTTAATATCATTAATATCACAAGATTTCAGTATATTATGCCTTTTTTATGGTTTATATGATGATTTTGTATTTTGATTTGAATTGGATTATGTTGTGTTGTGTTTTGGGGGGTGAATTATGAAAAGAGAGGGTGAAGAAGCAGATCAAGGTGCCATTTGCGGTGGGGAAGACAGAGGAAGGGTGTGATATATTCAGTGGAAGGTGGGTTTGGGATGAGGATGCACGACCATTGTACGAGGAATCGGAGTGTCCGTACATACAACCACAATTGACTTGCCAAAAACATGGGAGACCCGACAAAGATTACCAACATTGGAGGTGGCAACCACACGGTTGCGATCTTCCTAAGTAAGTGTCGTTTATTTATTTTGTTTGCTTCTTATTCAAGTTTGTAGCTAAAAAAGATGATTTTTGTGTGACAAAAATGCAGATTCAATGCTAGCTTGATGCTTGAAACACTACGTGGAAAGAGGATGATGTTTGTTGGAGACTCTCTCAATCGTGGTCAATATGTTTCTTTTGTATGCCTTCTTCATAGACTCATTCCTGAGGATGCCAAATCCATGGAAACCTTTGATTCACTCACTGTTTTCACAGCAAAGGTAAATCAATGTTATCTCCGATCTTCATTATTGTTATGAATGATGGAATCATAGGAATAAAGATCATAGTGATCAGCAGGAAAGAAATCATAAGAGTATTCGTGTGGGAGATATTCAGAGATTCATAGTAGAATGAATAGATTGATAAAAGAACGGGATAATGGAACAATAGAAAGTTAATTATAAGAGTGAATCGGTCTAACTAATTAACTCCTAACCATCAACTAACTCTAGTTGATTCACTTTACCGTAATAATTTGGTGCAAACCAAATATCCTCCGCGCGCAACTGCATAGACTAATCCTCGAACCTTGTGGGACTCAAATGGGCGGCAAACTTTTCCTAAGAGTTTTAACATTGTTGCATGTCTAAAGTTGAGATATATTTTATAAATGATATTAAATAGCGTAAAAGTAGCTAATTTGTTAATATTTGTGACCACTAAATATAATTATTTTTGTGTGTATATTTGAGACTAGAGGAATTAACTTATGTAGTATATATTATAACTACATAAAAATATGTACCATTTTTTATTGTTGATTTTCATGTGTTTAATCAGGAATACAATGCAACAATTGAGTTCTATTGGGCACCTTTTCTTCTAGAATCAAACTCGGACAATGCTGTTGTTCATAGGATATCTGATAGAATTGTAAGAAAAGGTTCAATAAATAAACATGGTAGAAATTGGAAAGGTGTTGACATTTTGGTATTCAACACTTATCTTTGGTGGATGACTGGCTTGGAGATGAAAATCTTGTATGTTCCCTCTTTTCTATTCAAACAAGTTTGTTCATTTATTTTGCTTAGCCCTTTTCCATTTTACTTATTTGAAAATTATATTAAAGTAATAATCCCTTTTCAATTTTTTTAGACTTGGATCTTTTGATGATGAAGTAAAAGAGATTGTCACAATTTCAACTGAGGATGCTTATCGTATGGCTATGAAAAGTATGCTTAGATGGGTGAGGTTGAACATGAATCCAAAGAAAACTAGAGTCTTCTTCACTAGCATGTCACCTTCTCATGGAAAGTGAGTATAATTATCTTCTCTTTCTCTTGCTATCTCTCATTTTCACACACTACAATGTTTTAAATTGCACTTTTTTTTTTACAACCTCAAGTCACATTAGCCTATTTAAATTGATCAATAATATGGTTGAGAATTTTCAATTTCAAAAATCATTTTAAAATTTATTAACTTTGAATACCAAACCATACAATTTTGGACCCCTTAAAAAAAATCTACAATTTTGGGATTAAAAAATAACAATTAACCCCAAATTAGCAACACCCTCCAGTCCCTATTATAATTAAAACTTAATTATTTAGGTTCATTTAATAAATAAAAATGATGTATACAGTCTATATTATAGACCATATACATCGCTTATTCAATGAACCAAAATTTGAATTTTTTCTTATAATAGTGAGCAGATGGTGTATACATATATCAATATCATAATACACCACTTCTAAGTTCTAATATTTCAACAAATATATGGCAGGAGTATAGATTGGGGAGGTGAGCCAGGAGGAAGTTGTTACAATGAAACAACTTTGATTAATAATTCCACATACTGGGGTTCTGATTGTAGAAAAAGTATAATGCAAGTGATTGGTGAAGTGTTAAGCAAAACAAAAGTTCCAATTACATTTCTTAACATCACACAACTTTCAAGTTATCGTAAAGATGCACACACTTCAATCTATAAGAAGCAATGGAGCCCTTTAACTAAAGAGCAATTAGCTAACCCAGTAAGCTATGCTGATTGTGTACATTGGTGTTTACCTGGTCTTCAAGATAATTGGAATGAACTTTTGTTTGCTAAGTTGTTTTATCCTTGA
Protein sequence

>MS.gene76094.t1

MKPPFSPSSILRSKGRFSPYLFTLLAFILFVTILYGEDFMCIFGEQLYNYSNQDKFFSTPERVKKQIKVPFAVGKTEEGCDIFSGRWVWDEDARPLYEESECPYIQPQLTCQKHGRPDKDYQHWRWQPHGCDLPKFNASLMLETLRGKRMMFVGDSLNRGQYVSFVCLLHRLIPEDAKSMETFDSLTVFTAKEYNATIEFYWAPFLLESNSDNAVVHRISDRIVRKGSINKHGRNWKGVDILVFNTYLWWMTGLEMKILLGSFDDEVKEIVTISTEDAYRMAMKSMLRWVRLNMNPKKTRVFFTSMSPSHGKSIDWGGEPGGSCYNETTLINNSTYWGSDCRKSIMQVIGEVLSKTKVPITFLNITQLSSYRKDAHTSIYKKQWSPLTKEQLANPVSYADCVHWCLPGLQDNWNELLFAKLFYP