AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene76140

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene76140.t1 MTR_2g100060 93.561 264 12 2 1 263 1 260 7.73e-147 411
MS.gene76140.t1 MTR_8g016370 46.718 259 98 6 5 263 7 225 3.13e-69 213
MS.gene76140.t1 MTR_3g104460 42.045 264 137 7 7 262 4 259 2.39e-65 204
MS.gene76140.t1 MTR_5g087760 30.041 243 142 7 1 227 1 231 8.55e-29 110
MS.gene76140.t1 MTR_5g076170 34.343 198 121 4 31 226 47 237 2.44e-23 95.9
MS.gene76140.t1 MTR_3g078800 28.750 240 147 6 1 227 1 229 1.12e-21 91.7
MS.gene76140.t1 MTR_2g012550 29.577 213 133 5 18 226 40 239 1.14e-21 91.3
MS.gene76140.t1 MTR_7g106000 28.947 228 145 9 34 253 7 225 2.60e-20 87.0
MS.gene76140.t1 MTR_3g063310 32.867 143 92 3 86 226 86 226 2.01e-18 82.4
MS.gene76140.t1 MTR_1g077560 30.000 190 130 2 61 249 60 247 1.45e-17 80.1
MS.gene76140.t1 MTR_7g105970 29.245 212 126 10 53 254 29 226 1.29e-15 74.3
MS.gene76140.t1 MTR_7g118270 27.895 190 127 4 69 254 46 229 2.85e-14 70.5
MS.gene76140.t1 MTR_3g078820 29.078 141 99 1 87 227 44 183 9.17e-14 68.9
MS.gene76140.t1 MTR_2g011350 24.000 175 126 2 80 254 35 202 1.46e-13 68.2
MS.gene76140.t1 MTR_1g057400 25.592 211 146 6 49 253 3 208 2.33e-13 67.8
MS.gene76140.t1 MTR_4g119428 27.317 205 128 5 41 227 12 213 2.37e-13 68.2
MS.gene76140.t1 MTR_1g057270 25.824 182 123 6 84 259 72 247 5.31e-13 67.4
MS.gene76140.t1 MTR_7g116930 27.317 205 128 5 30 229 33 221 7.37e-13 66.6
MS.gene76140.t1 MTR_3g062470 22.905 179 132 4 62 238 66 240 1.46e-12 66.2
MS.gene76140.t1 MTR_6g071410 25.786 159 113 4 61 215 2 159 4.07e-12 64.3
MS.gene76140.t1 MTR_6g070890 25.786 159 113 4 61 215 2 159 4.07e-12 64.3
MS.gene76140.t1 MTR_7g106010 26.407 231 152 8 34 253 3 226 1.90e-11 62.4
MS.gene76140.t1 MTR_6g471090 27.160 162 99 5 60 215 9 157 3.28e-11 61.6
MS.gene76140.t1 MTR_7g106030 26.887 212 133 9 54 252 27 229 3.41e-11 62.0
MS.gene76140.t1 MTR_3g074150 21.827 197 138 4 37 227 36 222 6.64e-11 61.2
MS.gene76140.t1 MTR_6g070900 26.882 186 116 8 62 235 2 179 9.64e-11 60.5
MS.gene76140.t1 MTR_6g071400 26.882 186 116 8 62 235 2 179 9.64e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene76140.t1 AT1G17620 46.642 268 127 4 3 262 4 263 8.67e-63 198
MS.gene76140.t1 AT5G11890 34.915 295 150 9 1 262 1 286 7.45e-44 150
MS.gene76140.t1 AT2G27080 31.557 244 142 7 1 227 1 236 5.05e-30 113
MS.gene76140.t1 AT2G27080 31.557 244 142 7 1 227 1 236 5.05e-30 113
MS.gene76140.t1 AT1G65690 31.056 161 107 3 68 226 68 226 1.75e-20 88.2
MS.gene76140.t1 AT5G36970 29.545 176 122 2 52 226 48 222 3.00e-18 82.0
MS.gene76140.t1 AT2G35980 28.440 218 150 5 40 253 11 226 3.82e-18 81.3
MS.gene76140.t1 AT1G54540 28.037 214 149 3 37 249 27 236 8.19e-17 77.8
MS.gene76140.t1 AT3G11650 26.633 199 138 6 60 254 45 239 8.40e-17 77.8
MS.gene76140.t1 AT5G21130 26.437 174 126 2 54 226 84 256 1.00e-16 78.2
MS.gene76140.t1 AT5G06320 27.660 188 126 5 70 253 49 230 8.49e-14 69.3
MS.gene76140.t1 AT5G22870 23.158 190 133 3 68 254 28 207 1.71e-12 65.1
MS.gene76140.t1 AT4G01410 24.242 198 137 5 59 254 41 227 2.51e-12 65.1
MS.gene76140.t1 AT2G27260 26.389 216 148 4 31 244 31 237 2.90e-11 62.4
MS.gene76140.t1 AT2G46300 28.025 157 104 4 84 232 77 232 7.74e-11 61.2

Find 85 sgRNAs with CRISPR-Local

Find 95 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCGAAGTTGACGCCGTTAC+TGG 0.277675 2.3:-3709371 None:intergenic
GCTGCTGCACCTTCTTCTTC+TGG 0.279365 2.3:+3708835 MS.gene76140:CDS
CTTCTCCTCCTCGGCGTAAC+GGG 0.331250 2.3:+3708882 MS.gene76140:CDS
ACGAAGGTGATATGTTTGTT+AGG 0.332211 2.3:-3709038 None:intergenic
TGCTTGACCAGTACTCAAAA+TGG 0.356336 2.3:-3709168 None:intergenic
TTGGTCATGGGTTTGGCGGC+GGG 0.359331 2.3:-3708672 None:intergenic
CGAAGGTGATATGTTTGTTA+GGG 0.379442 2.3:-3709037 None:intergenic
AGCAGCAACGGCGGCGGGTA+CGG 0.382447 2.3:-3708818 None:intergenic
CTTCATCAATTAAATTTAAA+CGG 0.385881 2.3:-3709438 None:intergenic
GACACCGTTGCCGTTGGTCA+TGG 0.391670 2.3:-3708685 None:intergenic
GTTGCCGTTGGTCATGGGTT+TGG 0.392896 2.3:-3708679 None:intergenic
TGGAGGAGGAGGTGAGGTTG+AGG 0.394091 2.3:-3708974 None:intergenic
TGAGTTGAGGGTGGAGGAGG+AGG 0.397719 2.3:-3708985 None:intergenic
GGTGCAGCAGCAACGGCGGC+GGG 0.411032 2.3:-3708823 None:intergenic
GTTGGTCATGGGTTTGGCGG+CGG 0.419990 2.3:-3708673 None:intergenic
TACAAAAGTGAAGGCTAAAG+TGG 0.436063 2.3:+3709268 MS.gene76140:CDS
TTGATGTTAGGTTTAAGATC+TGG 0.438319 2.3:+3709408 MS.gene76140:CDS
CCTTCTCCTCCTCGGCGTAA+CGG 0.438746 2.3:+3708881 MS.gene76140:CDS
TGAGGGTGGAGGAGGAGGTG+AGG 0.440148 2.3:-3708980 None:intergenic
TTAAGTGTGATGTTGATGTT+AGG 0.446188 2.3:+3709396 MS.gene76140:CDS
GGAAAGTTTGAGAGATGTTA+CGG 0.447386 2.3:-3708949 None:intergenic
ACACCGTTGCCGTTGGTCAT+GGG 0.448685 2.3:-3708684 None:intergenic
GGAGGAGGTGAGGTTGAGGT+AGG 0.450411 2.3:-3708970 None:intergenic
GAAGGAGGATGAGAAGTATG+AGG 0.450998 2.3:-3708863 None:intergenic
TTTAGCGTTGAAAGTGAAGT+TGG 0.454211 2.3:+3709244 MS.gene76140:CDS
TGAGGTTGTGGACGGTAGGT+AGG 0.457022 2.3:-3708789 None:intergenic
AACGGCGGCGGGTACGGCGG+TGG 0.458183 2.3:-3708812 None:intergenic
GTACGGCGGTGGTGAGGTTG+TGG 0.465045 2.3:-3708801 None:intergenic
GTAACTCTTATTCCAACGTT+AGG 0.471241 2.3:-3709305 None:intergenic
GGCTGGAAATGATGGGTTTG+CGG 0.475941 2.3:-3708736 None:intergenic
AGGTGCAGCAGCAACGGCGG+CGG 0.477876 2.3:-3708824 None:intergenic
AGAAGAAGGTGCAGCAGCAA+CGG 0.479402 2.3:-3708830 None:intergenic
TTAGGTTTAAGATCTGGAAA+TGG 0.481195 2.3:+3709414 MS.gene76140:CDS
TTCTTGCCATGTGTGAAAGT+TGG 0.485690 2.3:-3709122 None:intergenic
GAGAGAATTGTGATGGTGGT+TGG 0.496275 2.3:-3709068 None:intergenic
CTCATCCTCCTTCTCCTCCT+CGG 0.497763 2.3:+3708873 MS.gene76140:CDS
GCCGTTGGTCATGGGTTTGG+CGG 0.502360 2.3:-3708676 None:intergenic
GAGGTTGTGGACGGTAGGTA+GGG 0.503122 2.3:-3708788 None:intergenic
TTTGAGAGATGTTACGGTGA+AGG 0.503461 2.3:-3708943 None:intergenic
CCGTTACGCCGAGGAGGAGA+AGG 0.513542 2.3:-3708881 None:intergenic
ACTGGTTTCTTATTACCGAC+AGG 0.516093 2.3:-3709353 None:intergenic
GTTTGAGAGAATTGTGATGG+TGG 0.523617 2.3:-3709072 None:intergenic
TTGTGGACGGTAGGTAGGGC+GGG 0.525214 2.3:-3708784 None:intergenic
AGCAACGGCGGCGGGTACGG+CGG 0.526300 2.3:-3708815 None:intergenic
CGGCGGGTACGGCGGTGGTG+AGG 0.527713 2.3:-3708807 None:intergenic
GCCATGTGTGAAAGTTGGTA+TGG 0.529809 2.3:-3709117 None:intergenic
GTTGTGGACGGTAGGTAGGG+CGG 0.531506 2.3:-3708785 None:intergenic
GCCACAAAAGCTCAACTCTA+CGG 0.539658 2.3:+3708756 MS.gene76140:CDS
GTGGTGAGGTTGTGGACGGT+AGG 0.539763 2.3:-3708793 None:intergenic
GTTGTTTGAGAGAATTGTGA+TGG 0.543870 2.3:-3709075 None:intergenic
TACGGTGAAGGAAGGACGGT+GGG 0.551852 2.3:-3708931 None:intergenic
TGAAGGAAGGACGGTGGGGA+CGG 0.553633 2.3:-3708926 None:intergenic
AACGGTGTCACCAACGGTAA+CGG 0.557429 2.3:+3708699 MS.gene76140:CDS
AGAGATGTTACGGTGAAGGA+AGG 0.565773 2.3:-3708939 None:intergenic
GTCACCAACGGTAACGGTAA+CGG 0.571662 2.3:+3708705 MS.gene76140:CDS
GTTGGTGACACCGTTGCCGT+TGG 0.575232 2.3:-3708691 None:intergenic
GACGGTGGGGACGGTAGATG+AGG 0.578731 2.3:-3708917 None:intergenic
AACGGCAACGGTGTCACCAA+CGG 0.582278 2.3:+3708693 MS.gene76140:CDS
AGAAGGTGCAGCAGCAACGG+CGG 0.583077 2.3:-3708827 None:intergenic
GAAGTTGGATACAAAAGTGA+AGG 0.584664 2.3:+3709259 MS.gene76140:CDS
ATTAGAATCAGACGCTTCCA+CGG 0.587238 2.3:+3709190 MS.gene76140:CDS
GAATTGTGATGGTGGTTGGT+TGG 0.587560 2.3:-3709064 None:intergenic
CATGTTCTTCTTCAGCTCCG+TGG 0.589253 2.3:-3709207 None:intergenic
AAACCCATGACCAACGGCAA+CGG 0.592031 2.3:+3708681 MS.gene76140:CDS
GAGGAAGAACCAGAAGAAGA+AGG 0.593450 2.3:-3708844 None:intergenic
AACAACATCAACATCGGTGA+AGG 0.594037 2.3:+3709092 MS.gene76140:CDS
GCCGCCAAACCCATGACCAA+CGG 0.597855 2.3:+3708675 MS.gene76140:CDS
AAAATGAAAACACCTAACGT+TGG 0.600696 2.3:+3709293 MS.gene76140:CDS
GTTAGAGTTCATGTTCCTGT+CGG 0.607390 2.3:+3709338 MS.gene76140:CDS
TGGACGGTAGGTAGGGCGGG+TGG 0.609236 2.3:-3708781 None:intergenic
ACAAAAGTGAAGGCTAAAGT+GGG 0.615350 2.3:+3709269 MS.gene76140:CDS
CTCTCAAACAACATCAACAT+CGG 0.615638 2.3:+3709086 MS.gene76140:CDS
GACACCGTTACCGTTACCGT+TGG 0.628131 2.3:-3708709 None:intergenic
TTACGCCGAGGAGGAGAAGG+AGG 0.630487 2.3:-3708878 None:intergenic
GGCGGTGGTGAGGTTGTGGA+CGG 0.633011 2.3:-3708797 None:intergenic
TGGAAATGATGGGTTTGCGG+CGG 0.637844 2.3:-3708733 None:intergenic
ACCATACCAACTTTCACACA+TGG 0.645797 2.3:+3709116 MS.gene76140:CDS
CGGTGCCCGTTACGCCGAGG+AGG 0.646188 2.3:-3708887 None:intergenic
ATGTTACGGTGAAGGAAGGA+CGG 0.655102 2.3:-3708935 None:intergenic
TTACGGTGAAGGAAGGACGG+TGG 0.673058 2.3:-3708932 None:intergenic
CGGTAATAAGAAACCAGTAA+CGG 0.676522 2.3:+3709358 MS.gene76140:CDS
AAGCGGTGCCCGTTACGCCG+AGG 0.677693 2.3:-3708890 None:intergenic
ACGGTAGATGAGGTAGAAAG+CGG 0.681553 2.3:-3708907 None:intergenic
GGTGGTTGGTTGGTAAACGA+AGG 0.694931 2.3:-3709054 None:intergenic
ACGGTGAAGGAAGGACGGTG+GGG 0.703670 2.3:-3708930 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
AAAATGAAAACACCTAACGT+TGG + chr2.3:3709293-3709312 MS.gene76140:CDS 30.0%
AAGAACATGAAGAGCAAAAA+CGG + chr2.3:3709221-3709240 MS.gene76140:CDS 30.0%
TTAAGTGTGATGTTGATGTT+AGG + chr2.3:3709396-3709415 MS.gene76140:CDS 30.0%
! TTAGGTTTAAGATCTGGAAA+TGG + chr2.3:3709414-3709433 MS.gene76140:CDS 30.0%
! TTGATGTTAGGTTTAAGATC+TGG + chr2.3:3709408-3709427 MS.gene76140:CDS 30.0%
!! AAATCTTCCATTTTGAGTAC+TGG + chr2.3:3709161-3709180 MS.gene76140:CDS 30.0%
ACAAAAGTGAAGGCTAAAGT+GGG + chr2.3:3709269-3709288 MS.gene76140:CDS 35.0%
ACGAAGGTGATATGTTTGTT+AGG - chr2.3:3709041-3709060 None:intergenic 35.0%
CGGTAATAAGAAACCAGTAA+CGG + chr2.3:3709358-3709377 MS.gene76140:CDS 35.0%
CTCTCAAACAACATCAACAT+CGG + chr2.3:3709086-3709105 MS.gene76140:CDS 35.0%
GAAGTTGGATACAAAAGTGA+AGG + chr2.3:3709259-3709278 MS.gene76140:CDS 35.0%
GGAAAGTTTGAGAGATGTTA+CGG - chr2.3:3708952-3708971 None:intergenic 35.0%
GTAACTCTTATTCCAACGTT+AGG - chr2.3:3709308-3709327 None:intergenic 35.0%
GTTGTTTGAGAGAATTGTGA+TGG - chr2.3:3709078-3709097 None:intergenic 35.0%
TACAAAAGTGAAGGCTAAAG+TGG + chr2.3:3709268-3709287 MS.gene76140:CDS 35.0%
! CGAAGGTGATATGTTTGTTA+GGG - chr2.3:3709040-3709059 None:intergenic 35.0%
! TTTAGCGTTGAAAGTGAAGT+TGG + chr2.3:3709244-3709263 MS.gene76140:CDS 35.0%
!!! GACGTTGAATTTTGAGTTGA+GGG - chr2.3:3709000-3709019 None:intergenic 35.0%
!!! TGACGTTGAATTTTGAGTTG+AGG - chr2.3:3709001-3709020 None:intergenic 35.0%
AACAACATCAACATCGGTGA+AGG + chr2.3:3709092-3709111 MS.gene76140:CDS 40.0%
ACCATACCAACTTTCACACA+TGG + chr2.3:3709116-3709135 MS.gene76140:CDS 40.0%
ATTAGAATCAGACGCTTCCA+CGG + chr2.3:3709190-3709209 MS.gene76140:CDS 40.0%
GTTAGAGTTCATGTTCCTGT+CGG + chr2.3:3709338-3709357 MS.gene76140:CDS 40.0%
GTTTGAGAGAATTGTGATGG+TGG - chr2.3:3709075-3709094 None:intergenic 40.0%
TGCTTGACCAGTACTCAAAA+TGG - chr2.3:3709171-3709190 None:intergenic 40.0%
TTCTTGCCATGTGTGAAAGT+TGG - chr2.3:3709125-3709144 None:intergenic 40.0%
TTTGAGAGATGTTACGGTGA+AGG - chr2.3:3708946-3708965 None:intergenic 40.0%
! ACTGGTTTCTTATTACCGAC+AGG - chr2.3:3709356-3709375 None:intergenic 40.0%
! CTTTTGTGGCTGGAAATGAT+GGG - chr2.3:3708746-3708765 None:intergenic 40.0%
!!! GTTGAATTTTGAGTTGAGGG+TGG - chr2.3:3708997-3709016 None:intergenic 40.0%
ACGGTAGATGAGGTAGAAAG+CGG - chr2.3:3708910-3708929 None:intergenic 45.0%
AGAGATGTTACGGTGAAGGA+AGG - chr2.3:3708942-3708961 None:intergenic 45.0%
ATGTTACGGTGAAGGAAGGA+CGG - chr2.3:3708938-3708957 None:intergenic 45.0%
GAGGAAGAACCAGAAGAAGA+AGG - chr2.3:3708847-3708866 None:intergenic 45.0%
GCCACAAAAGCTCAACTCTA+CGG + chr2.3:3708756-3708775 MS.gene76140:CDS 45.0%
! ACCGTAGAGTTGAGCTTTTG+TGG - chr2.3:3708760-3708779 None:intergenic 45.0%
! GAAGGAGGATGAGAAGTATG+AGG - chr2.3:3708866-3708885 None:intergenic 45.0%
! GCTTTTGTGGCTGGAAATGA+TGG - chr2.3:3708747-3708766 None:intergenic 45.0%
! TAGAGTTGAGCTTTTGTGGC+TGG - chr2.3:3708756-3708775 None:intergenic 45.0%
!! GAATTGTGATGGTGGTTGGT+TGG - chr2.3:3709067-3709086 None:intergenic 45.0%
!! GAGAGAATTGTGATGGTGGT+TGG - chr2.3:3709071-3709090 None:intergenic 45.0%
!! GCCATGTGTGAAAGTTGGTA+TGG - chr2.3:3709120-3709139 None:intergenic 45.0%
!!! GAATTTTGAGTTGAGGGTGG+AGG - chr2.3:3708994-3709013 None:intergenic 45.0%
AAACCCATGACCAACGGCAA+CGG + chr2.3:3708681-3708700 MS.gene76140:CDS 50.0%
CATGTTCTTCTTCAGCTCCG+TGG - chr2.3:3709210-3709229 None:intergenic 50.0%
TTCGAAGTTGACGCCGTTAC+TGG - chr2.3:3709374-3709393 None:intergenic 50.0%
! AGAAGAAGGTGCAGCAGCAA+CGG - chr2.3:3708833-3708852 None:intergenic 50.0%
! GTCACCAACGGTAACGGTAA+CGG + chr2.3:3708705-3708724 MS.gene76140:CDS 50.0%
!! AACGGTGTCACCAACGGTAA+CGG + chr2.3:3708699-3708718 MS.gene76140:CDS 50.0%
!! GGCTGGAAATGATGGGTTTG+CGG - chr2.3:3708739-3708758 None:intergenic 50.0%
!! GGTGGTTGGTTGGTAAACGA+AGG - chr2.3:3709057-3709076 None:intergenic 50.0%
!! TGGAAATGATGGGTTTGCGG+CGG - chr2.3:3708736-3708755 None:intergenic 50.0%
!!! TTTTGAGTTGAGGGTGGAGG+AGG - chr2.3:3708991-3709010 None:intergenic 50.0%
ACACCGTTGCCGTTGGTCAT+GGG - chr2.3:3708687-3708706 None:intergenic 55.0%
CTCATCCTCCTTCTCCTCCT+CGG + chr2.3:3708873-3708892 MS.gene76140:CDS 55.0%
GACACCGTTACCGTTACCGT+TGG - chr2.3:3708712-3708731 None:intergenic 55.0%
GAGGTTGTGGACGGTAGGTA+GGG - chr2.3:3708791-3708810 None:intergenic 55.0%
GCTGCTGCACCTTCTTCTTC+TGG + chr2.3:3708835-3708854 MS.gene76140:CDS 55.0%
GTTGCCGTTGGTCATGGGTT+TGG - chr2.3:3708682-3708701 None:intergenic 55.0%
TACGGTGAAGGAAGGACGGT+GGG - chr2.3:3708934-3708953 None:intergenic 55.0%
TGAGGTTGTGGACGGTAGGT+AGG - chr2.3:3708792-3708811 None:intergenic 55.0%
TTACGGTGAAGGAAGGACGG+TGG - chr2.3:3708935-3708954 None:intergenic 55.0%
!! AACGGCAACGGTGTCACCAA+CGG + chr2.3:3708693-3708712 MS.gene76140:CDS 55.0%
ACGGTGAAGGAAGGACGGTG+GGG - chr2.3:3708933-3708952 None:intergenic 60.0%
CCTTCTCCTCCTCGGCGTAA+CGG + chr2.3:3708881-3708900 MS.gene76140:CDS 60.0%
CTTCTCCTCCTCGGCGTAAC+GGG + chr2.3:3708882-3708901 MS.gene76140:CDS 60.0%
GACACCGTTGCCGTTGGTCA+TGG - chr2.3:3708688-3708707 None:intergenic 60.0%
GCCGCCAAACCCATGACCAA+CGG + chr2.3:3708675-3708694 MS.gene76140:CDS 60.0%
GCCGTTGGTCATGGGTTTGG+CGG - chr2.3:3708679-3708698 None:intergenic 60.0%
GGAGGAGGTGAGGTTGAGGT+AGG - chr2.3:3708973-3708992 None:intergenic 60.0%
GTGGTGAGGTTGTGGACGGT+AGG - chr2.3:3708796-3708815 None:intergenic 60.0%
GTTGGTCATGGGTTTGGCGG+CGG - chr2.3:3708676-3708695 None:intergenic 60.0%
GTTGTGGACGGTAGGTAGGG+CGG - chr2.3:3708788-3708807 None:intergenic 60.0%
TGAAGGAAGGACGGTGGGGA+CGG - chr2.3:3708929-3708948 None:intergenic 60.0%
TGGAGGAGGAGGTGAGGTTG+AGG - chr2.3:3708977-3708996 None:intergenic 60.0%
TTACGCCGAGGAGGAGAAGG+AGG - chr2.3:3708881-3708900 None:intergenic 60.0%
TTGGTCATGGGTTTGGCGGC+GGG - chr2.3:3708675-3708694 None:intergenic 60.0%
TTGTGGACGGTAGGTAGGGC+GGG - chr2.3:3708787-3708806 None:intergenic 60.0%
! AGAAGGTGCAGCAGCAACGG+CGG - chr2.3:3708830-3708849 None:intergenic 60.0%
! TGAGTTGAGGGTGGAGGAGG+AGG - chr2.3:3708988-3709007 None:intergenic 60.0%
!! GTTGGTGACACCGTTGCCGT+TGG - chr2.3:3708694-3708713 None:intergenic 60.0%
CCGTTACGCCGAGGAGGAGA+AGG - chr2.3:3708884-3708903 None:intergenic 65.0%
GACGGTGGGGACGGTAGATG+AGG - chr2.3:3708920-3708939 None:intergenic 65.0%
GGCGGTGGTGAGGTTGTGGA+CGG - chr2.3:3708800-3708819 None:intergenic 65.0%
GTACGGCGGTGGTGAGGTTG+TGG - chr2.3:3708804-3708823 None:intergenic 65.0%
TGAGGGTGGAGGAGGAGGTG+AGG - chr2.3:3708983-3709002 None:intergenic 65.0%
AAGCGGTGCCCGTTACGCCG+AGG - chr2.3:3708893-3708912 None:intergenic 70.0%
AGCAGCAACGGCGGCGGGTA+CGG - chr2.3:3708821-3708840 None:intergenic 70.0%
AGGTGCAGCAGCAACGGCGG+CGG - chr2.3:3708827-3708846 None:intergenic 70.0%
TGGACGGTAGGTAGGGCGGG+TGG - chr2.3:3708784-3708803 None:intergenic 70.0%
AGCAACGGCGGCGGGTACGG+CGG - chr2.3:3708818-3708837 None:intergenic 75.0%
CGGTGCCCGTTACGCCGAGG+AGG - chr2.3:3708890-3708909 None:intergenic 75.0%
GGTGCAGCAGCAACGGCGGC+GGG - chr2.3:3708826-3708845 None:intergenic 75.0%
! AACGGCGGCGGGTACGGCGG+TGG - chr2.3:3708815-3708834 None:intergenic 80.0%
! CGGCGGGTACGGCGGTGGTG+AGG - chr2.3:3708810-3708829 None:intergenic 80.0%


Chromosome Type Strat End Strand Name
chr2.3 gene 3708654 3709445 3708654 ID=MS.gene76140
chr2.3 mRNA 3708654 3709445 3708654 ID=MS.gene76140.t1;Parent=MS.gene76140
chr2.3 exon 3708654 3709445 3708654 ID=MS.gene76140.t1.exon1;Parent=MS.gene76140.t1
chr2.3 CDS 3708654 3709445 3708654 ID=cds.MS.gene76140.t1;Parent=MS.gene76140.t1
Gene Sequence

>MS.gene76140

ATGGCAGATCGTGTATATCCCGCCGCCAAACCCATGACCAACGGCAACGGTGTCACCAACGGTAACGGTAACGGTGTCTCCGCCGCAAACCCATCATTTCCAGCCACAAAAGCTCAACTCTACGGTGCCACCCGCCCTACCTACCGTCCACAACCTCACCACCGCCGTACCCGCCGCCGTTGCTGCTGCACCTTCTTCTTCTGGTTCTTCCTCATACTTCTCATCCTCCTTCTCCTCCTCGGCGTAACGGGCACCGCTTTCTACCTCATCTACCGTCCCCACCGTCCTTCCTTCACCGTAACATCTCTCAAACTTTCCTACCTCAACCTCACCTCCTCCTCCACCCTCAACTCAAAATTCAACGTCAACATCACTGCAAAAAACCCTAACAAACATATCACCTTCGTTTACCAACCAACCACCATCACAATTCTCTCAAACAACATCAACATCGGTGAAGGAACCATACCAACTTTCACACATGGCAAGAAGAACACTACTCGTCTAAAATCTTCCATTTTGAGTACTGGTCAAGCATTAGAATCAGACGCTTCCACGGAGCTGAAGAAGAACATGAAGAGCAAAAACGGTTTAGCGTTGAAAGTGAAGTTGGATACAAAAGTGAAGGCTAAAGTGGGAAAAATGAAAACACCTAACGTTGGAATAAGAGTTACATGTGACGATGTTAGAGTTCATGTTCCTGTCGGTAATAAGAAACCAGTAACGGCGTCAACTTCGAACGTTAAGTGTGATGTTGATGTTAGGTTTAAGATCTGGAAATGGACCGTTTAA
Protein sequence

>MS.gene76140.t1

MADRVYPAAKPMTNGNGVTNGNGNGVSAANPSFPATKAQLYGATRPTYRPQPHHRRTRRRCCCTFFFWFFLILLILLLLLGVTGTAFYLIYRPHRPSFTVTSLKLSYLNLTSSSTLNSKFNVNITAKNPNKHITFVYQPTTITILSNNINIGEGTIPTFTHGKKNTTRLKSSILSTGQALESDASTELKKNMKSKNGLALKVKLDTKVKAKVGKMKTPNVGIRVTCDDVRVHVPVGNKKPVTASTSNVKCDVDVRFKIWKWTV