Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76222.t1 | XP_013470283.1 | 97.1 | 210 | 6 | 0 | 1 | 210 | 1 | 210 | 9.70E-111 | 409.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76222.t1 | Q9SR72 | 60.1 | 208 | 73 | 3 | 10 | 207 | 12 | 219 | 2.8e-66 | 253.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76222.t1 | A0A072VRM6 | 97.1 | 210 | 6 | 0 | 1 | 210 | 1 | 210 | 7.0e-111 | 409.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04915 | MS.gene76222 | 0.81795 | 2.53E-52 | -1.69E-46 |
| MS.gene049178 | MS.gene76222 | 0.816397 | 5.65E-52 | -1.69E-46 |
| MS.gene04917 | MS.gene76222 | 0.81192 | 5.50E-51 | -1.69E-46 |
| MS.gene056638 | MS.gene76222 | 0.808782 | 2.61E-50 | -1.69E-46 |
| MS.gene056830 | MS.gene76222 | -0.808566 | 2.91E-50 | -1.69E-46 |
| MS.gene060869 | MS.gene76222 | 0.851525 | 8.38E-61 | -1.69E-46 |
| MS.gene060870 | MS.gene76222 | 0.801447 | 8.97E-49 | -1.69E-46 |
| MS.gene060879 | MS.gene76222 | 0.803227 | 3.86E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76222.t1 | MTR_1g112200 | 97.143 | 210 | 6 | 0 | 1 | 210 | 1 | 210 | 1.95e-149 | 414 |
| MS.gene76222.t1 | MTR_1g060120 | 56.931 | 202 | 76 | 1 | 17 | 207 | 20 | 221 | 9.96e-82 | 243 |
| MS.gene76222.t1 | MTR_1g085500 | 42.512 | 207 | 112 | 3 | 7 | 206 | 7 | 213 | 3.88e-52 | 167 |
| MS.gene76222.t1 | MTR_7g111240 | 45.550 | 191 | 98 | 4 | 22 | 207 | 19 | 208 | 1.41e-51 | 166 |
| MS.gene76222.t1 | MTR_7g111240 | 44.845 | 194 | 98 | 4 | 22 | 207 | 19 | 211 | 4.89e-51 | 164 |
| MS.gene76222.t1 | MTR_1g085140 | 43.367 | 196 | 104 | 3 | 19 | 207 | 20 | 215 | 3.83e-50 | 162 |
| MS.gene76222.t1 | MTR_6g005330 | 43.721 | 215 | 105 | 6 | 7 | 207 | 3 | 215 | 9.10e-48 | 156 |
| MS.gene76222.t1 | MTR_6g005310 | 43.981 | 216 | 106 | 6 | 5 | 207 | 2 | 215 | 1.86e-47 | 155 |
| MS.gene76222.t1 | MTR_6g005360 | 43.721 | 215 | 108 | 5 | 5 | 207 | 2 | 215 | 3.64e-47 | 154 |
| MS.gene76222.t1 | MTR_6g005340 | 43.981 | 216 | 106 | 6 | 5 | 207 | 2 | 215 | 6.06e-47 | 154 |
| MS.gene76222.t1 | MTR_1g079490 | 44.059 | 202 | 98 | 6 | 19 | 207 | 18 | 217 | 6.49e-47 | 154 |
| MS.gene76222.t1 | MTR_5g046410 | 42.105 | 209 | 89 | 7 | 19 | 206 | 18 | 215 | 3.70e-44 | 147 |
| MS.gene76222.t1 | MTR_5g046430 | 42.105 | 209 | 89 | 7 | 19 | 206 | 18 | 215 | 3.70e-44 | 147 |
| MS.gene76222.t1 | MTR_4g017030 | 42.105 | 209 | 89 | 7 | 19 | 206 | 18 | 215 | 3.70e-44 | 147 |
| MS.gene76222.t1 | MTR_4g017050 | 42.029 | 207 | 92 | 7 | 19 | 206 | 18 | 215 | 4.12e-44 | 147 |
| MS.gene76222.t1 | MTR_4g017040 | 40.625 | 224 | 96 | 8 | 9 | 206 | 3 | 215 | 5.34e-44 | 147 |
| MS.gene76222.t1 | MTR_2g019250 | 42.105 | 209 | 89 | 7 | 19 | 206 | 18 | 215 | 9.90e-44 | 146 |
| MS.gene76222.t1 | MTR_5g036570 | 41.753 | 194 | 105 | 4 | 22 | 207 | 26 | 219 | 9.48e-43 | 143 |
| MS.gene76222.t1 | MTR_1g023770 | 39.109 | 202 | 116 | 4 | 11 | 207 | 10 | 209 | 1.71e-42 | 142 |
| MS.gene76222.t1 | MTR_2g030855 | 40.513 | 195 | 108 | 5 | 20 | 207 | 19 | 212 | 8.94e-42 | 140 |
| MS.gene76222.t1 | MTR_2g031270 | 40.957 | 188 | 103 | 5 | 27 | 207 | 27 | 213 | 1.72e-41 | 140 |
| MS.gene76222.t1 | MTR_6g005350 | 40.686 | 204 | 99 | 6 | 19 | 207 | 18 | 214 | 1.98e-38 | 132 |
| MS.gene76222.t1 | MTR_2g041570 | 36.364 | 209 | 124 | 3 | 9 | 210 | 3 | 209 | 1.59e-37 | 129 |
| MS.gene76222.t1 | MTR_2g041580 | 36.946 | 203 | 119 | 3 | 9 | 204 | 3 | 203 | 2.45e-37 | 129 |
| MS.gene76222.t1 | MTR_2g030895 | 41.573 | 178 | 86 | 5 | 42 | 207 | 7 | 178 | 6.59e-37 | 127 |
| MS.gene76222.t1 | MTR_2g041550 | 36.816 | 201 | 122 | 2 | 9 | 204 | 3 | 203 | 1.29e-36 | 127 |
| MS.gene76222.t1 | MTR_8g020590 | 36.058 | 208 | 115 | 5 | 10 | 205 | 1 | 202 | 1.72e-35 | 124 |
| MS.gene76222.t1 | MTR_2g030865 | 41.279 | 172 | 95 | 4 | 42 | 207 | 7 | 178 | 2.45e-35 | 123 |
| MS.gene76222.t1 | MTR_3g019710 | 34.286 | 210 | 127 | 5 | 8 | 210 | 3 | 208 | 1.03e-34 | 122 |
| MS.gene76222.t1 | MTR_2g086640 | 34.597 | 211 | 112 | 5 | 12 | 209 | 8 | 205 | 2.39e-34 | 121 |
| MS.gene76222.t1 | MTR_8g020630 | 35.437 | 206 | 124 | 6 | 8 | 207 | 3 | 205 | 5.40e-34 | 120 |
| MS.gene76222.t1 | MTR_2g036120 | 33.493 | 209 | 130 | 4 | 8 | 210 | 3 | 208 | 2.76e-33 | 119 |
| MS.gene76222.t1 | MTR_8g020610 | 32.381 | 210 | 131 | 5 | 8 | 210 | 1 | 206 | 4.07e-33 | 118 |
| MS.gene76222.t1 | MTR_6g005380 | 39.109 | 202 | 108 | 5 | 7 | 197 | 9 | 206 | 4.79e-33 | 118 |
| MS.gene76222.t1 | MTR_3g019680 | 35.238 | 210 | 121 | 6 | 8 | 210 | 6 | 207 | 5.89e-33 | 118 |
| MS.gene76222.t1 | MTR_2g045100 | 36.464 | 181 | 108 | 4 | 33 | 210 | 32 | 208 | 7.49e-33 | 117 |
| MS.gene76222.t1 | MTR_8g020650 | 37.433 | 187 | 108 | 6 | 27 | 207 | 22 | 205 | 2.10e-32 | 116 |
| MS.gene76222.t1 | MTR_3g019650 | 35.714 | 210 | 120 | 7 | 8 | 210 | 6 | 207 | 2.88e-32 | 116 |
| MS.gene76222.t1 | MTR_8g007300 | 35.294 | 187 | 113 | 2 | 22 | 200 | 25 | 211 | 8.90e-32 | 115 |
| MS.gene76222.t1 | MTR_2g044040 | 32.857 | 210 | 130 | 5 | 8 | 210 | 3 | 208 | 1.16e-31 | 114 |
| MS.gene76222.t1 | MTR_4g010340 | 33.163 | 196 | 122 | 4 | 16 | 207 | 11 | 201 | 3.24e-31 | 113 |
| MS.gene76222.t1 | MTR_3g096330 | 41.176 | 170 | 88 | 2 | 15 | 172 | 563 | 732 | 4.40e-31 | 119 |
| MS.gene76222.t1 | MTR_8g020670 | 33.990 | 203 | 125 | 5 | 11 | 207 | 6 | 205 | 4.74e-31 | 113 |
| MS.gene76222.t1 | MTR_4g052770 | 33.333 | 213 | 122 | 5 | 5 | 209 | 7 | 207 | 6.41e-31 | 112 |
| MS.gene76222.t1 | MTR_8g020763 | 34.706 | 170 | 107 | 3 | 40 | 207 | 19 | 186 | 1.48e-30 | 111 |
| MS.gene76222.t1 | MTR_2g086620 | 32.057 | 209 | 120 | 5 | 12 | 209 | 9 | 206 | 1.62e-30 | 111 |
| MS.gene76222.t1 | MTR_2g086630 | 32.057 | 209 | 120 | 5 | 12 | 209 | 9 | 206 | 1.66e-30 | 111 |
| MS.gene76222.t1 | MTR_8g020750 | 33.175 | 211 | 130 | 4 | 8 | 210 | 4 | 211 | 3.36e-30 | 111 |
| MS.gene76222.t1 | MTR_0284s0010 | 32.857 | 210 | 130 | 5 | 8 | 210 | 3 | 208 | 4.48e-30 | 110 |
| MS.gene76222.t1 | MTR_4g052780 | 37.888 | 161 | 96 | 2 | 53 | 209 | 47 | 207 | 5.69e-30 | 110 |
| MS.gene76222.t1 | MTR_3g073170 | 34.574 | 188 | 112 | 5 | 29 | 210 | 27 | 209 | 2.41e-28 | 106 |
| MS.gene76222.t1 | MTR_2g031300 | 40.625 | 160 | 70 | 4 | 42 | 196 | 7 | 146 | 1.15e-27 | 102 |
| MS.gene76222.t1 | MTR_7g011340 | 31.383 | 188 | 124 | 2 | 27 | 210 | 22 | 208 | 1.40e-27 | 104 |
| MS.gene76222.t1 | MTR_5g031460 | 30.144 | 209 | 137 | 4 | 8 | 210 | 3 | 208 | 3.38e-27 | 103 |
| MS.gene76222.t1 | MTR_8g020770 | 30.144 | 209 | 139 | 3 | 8 | 210 | 4 | 211 | 4.49e-27 | 102 |
| MS.gene76222.t1 | MTR_8g020760 | 32.394 | 213 | 128 | 8 | 8 | 210 | 4 | 210 | 1.73e-26 | 101 |
| MS.gene76222.t1 | MTR_2g019780 | 32.258 | 186 | 113 | 7 | 29 | 207 | 29 | 208 | 1.21e-24 | 96.7 |
| MS.gene76222.t1 | MTR_3g019810 | 28.846 | 208 | 133 | 5 | 3 | 204 | 104 | 302 | 1.75e-21 | 90.1 |
| MS.gene76222.t1 | MTR_4g027415 | 35.200 | 125 | 70 | 5 | 27 | 144 | 22 | 142 | 9.78e-14 | 66.2 |
| MS.gene76222.t1 | MTR_2g072560 | 32.759 | 116 | 68 | 4 | 8 | 116 | 3 | 115 | 3.99e-11 | 59.3 |
| MS.gene76222.t1 | MTR_3g019610 | 34.906 | 106 | 59 | 4 | 8 | 106 | 3 | 105 | 5.05e-11 | 58.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76222.t1 | AT3G10080 | 60.784 | 204 | 68 | 3 | 13 | 207 | 19 | 219 | 2.02e-86 | 255 |
| MS.gene76222.t1 | AT3G10080 | 60.784 | 204 | 68 | 3 | 13 | 207 | 90 | 290 | 5.31e-86 | 256 |
| MS.gene76222.t1 | AT1G02335 | 41.935 | 217 | 118 | 4 | 1 | 209 | 1 | 217 | 3.96e-56 | 177 |
| MS.gene76222.t1 | AT3G04200 | 46.040 | 202 | 96 | 5 | 8 | 198 | 14 | 213 | 5.00e-53 | 170 |
| MS.gene76222.t1 | AT1G18980 | 45.192 | 208 | 105 | 4 | 7 | 207 | 13 | 218 | 6.68e-53 | 169 |
| MS.gene76222.t1 | AT1G18970 | 42.308 | 208 | 111 | 4 | 7 | 207 | 13 | 218 | 1.34e-51 | 166 |
| MS.gene76222.t1 | AT5G39160 | 41.429 | 210 | 113 | 5 | 7 | 209 | 11 | 217 | 2.45e-51 | 165 |
| MS.gene76222.t1 | AT5G39160 | 40.930 | 215 | 111 | 6 | 7 | 209 | 11 | 221 | 3.07e-51 | 165 |
| MS.gene76222.t1 | AT5G39130 | 40.465 | 215 | 112 | 6 | 7 | 209 | 11 | 221 | 4.44e-51 | 165 |
| MS.gene76222.t1 | AT5G39190 | 40.930 | 215 | 111 | 6 | 7 | 209 | 11 | 221 | 5.00e-51 | 164 |
| MS.gene76222.t1 | AT3G05950 | 43.981 | 216 | 106 | 6 | 7 | 210 | 12 | 224 | 7.88e-51 | 164 |
| MS.gene76222.t1 | AT5G26700 | 40.777 | 206 | 115 | 4 | 7 | 207 | 6 | 209 | 2.37e-50 | 162 |
| MS.gene76222.t1 | AT5G38960 | 44.390 | 205 | 94 | 6 | 19 | 207 | 22 | 222 | 2.62e-50 | 163 |
| MS.gene76222.t1 | AT3G62020 | 43.137 | 204 | 108 | 4 | 12 | 207 | 12 | 215 | 4.55e-50 | 162 |
| MS.gene76222.t1 | AT1G09560 | 44.041 | 193 | 101 | 3 | 22 | 207 | 23 | 215 | 3.40e-49 | 160 |
| MS.gene76222.t1 | AT5G39110 | 41.014 | 217 | 113 | 6 | 5 | 207 | 5 | 220 | 2.17e-48 | 158 |
| MS.gene76222.t1 | AT5G39180 | 40.183 | 219 | 105 | 6 | 8 | 207 | 8 | 219 | 5.71e-48 | 157 |
| MS.gene76222.t1 | AT3G05930 | 38.605 | 215 | 124 | 3 | 1 | 207 | 1 | 215 | 8.59e-48 | 156 |
| MS.gene76222.t1 | AT5G38910 | 42.326 | 215 | 109 | 6 | 6 | 207 | 7 | 219 | 8.97e-48 | 156 |
| MS.gene76222.t1 | AT5G38940 | 42.424 | 198 | 101 | 5 | 22 | 207 | 25 | 221 | 1.07e-47 | 156 |
| MS.gene76222.t1 | AT5G39150 | 40.183 | 219 | 105 | 6 | 8 | 207 | 8 | 219 | 1.40e-47 | 155 |
| MS.gene76222.t1 | AT5G38940 | 42.424 | 198 | 101 | 5 | 22 | 207 | 49 | 245 | 1.50e-47 | 156 |
| MS.gene76222.t1 | AT5G39120 | 40.000 | 225 | 106 | 7 | 5 | 207 | 2 | 219 | 3.38e-47 | 155 |
| MS.gene76222.t1 | AT3G62020 | 45.652 | 184 | 94 | 4 | 28 | 207 | 5 | 186 | 2.46e-46 | 152 |
| MS.gene76222.t1 | AT5G39160 | 39.234 | 209 | 101 | 6 | 7 | 209 | 11 | 199 | 8.69e-46 | 150 |
| MS.gene76222.t1 | AT5G39190 | 39.234 | 209 | 101 | 6 | 7 | 209 | 11 | 199 | 1.40e-45 | 150 |
| MS.gene76222.t1 | AT3G04180 | 39.500 | 200 | 110 | 4 | 20 | 208 | 23 | 222 | 5.94e-45 | 149 |
| MS.gene76222.t1 | AT3G04150 | 39.906 | 213 | 115 | 5 | 8 | 209 | 13 | 223 | 1.14e-44 | 149 |
| MS.gene76222.t1 | AT4G14630 | 39.500 | 200 | 107 | 5 | 21 | 207 | 24 | 222 | 1.89e-44 | 148 |
| MS.gene76222.t1 | AT3G04170 | 41.232 | 211 | 110 | 5 | 8 | 208 | 13 | 219 | 1.23e-43 | 146 |
| MS.gene76222.t1 | AT5G38930 | 40.201 | 199 | 106 | 5 | 21 | 207 | 24 | 221 | 1.58e-43 | 145 |
| MS.gene76222.t1 | AT3G04190 | 40.299 | 201 | 107 | 5 | 20 | 208 | 23 | 222 | 1.66e-43 | 145 |
| MS.gene76222.t1 | AT3G04150 | 38.496 | 226 | 113 | 6 | 8 | 209 | 13 | 236 | 4.07e-43 | 145 |
| MS.gene76222.t1 | AT5G20630 | 38.798 | 183 | 107 | 2 | 27 | 204 | 22 | 204 | 2.29e-39 | 134 |
| MS.gene76222.t1 | AT1G10460 | 36.181 | 199 | 113 | 5 | 22 | 207 | 18 | 215 | 4.03e-39 | 134 |
| MS.gene76222.t1 | AT5G61750 | 39.344 | 183 | 92 | 4 | 9 | 178 | 5 | 181 | 1.51e-34 | 122 |
| MS.gene76222.t1 | AT1G74820 | 31.250 | 224 | 135 | 6 | 2 | 209 | 7 | 227 | 3.28e-33 | 119 |
| MS.gene76222.t1 | AT1G72610 | 37.297 | 185 | 107 | 3 | 27 | 204 | 19 | 201 | 5.97e-33 | 118 |
| MS.gene76222.t1 | AT5G38910 | 35.681 | 213 | 89 | 6 | 6 | 207 | 7 | 182 | 5.30e-31 | 112 |
| MS.gene76222.t1 | AT5G38950 | 49.206 | 63 | 30 | 1 | 138 | 198 | 2 | 64 | 2.64e-12 | 61.2 |
Find 21 sgRNAs with CRISPR-Local
Find 42 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAGATTAAAGATGAGCTTT+TGG | 0.263245 | 1.1:+79281528 | MS.gene76222:CDS |
| GAATTTGTTATCTTCTGATT+TGG | 0.267937 | 1.1:-79281080 | None:intergenic |
| CCAGTTTCTTTGAAGTTTCC+TGG | 0.322734 | 1.1:-79281163 | None:intergenic |
| TTCTGATCCGGATCCTGTTA+TGG | 0.323739 | 1.1:+79281045 | MS.gene76222:CDS |
| CCAGGAAACTTCAAAGAAAC+TGG | 0.339479 | 1.1:+79281163 | MS.gene76222:CDS |
| GTGAATTCAAATGTGTTTCC+AGG | 0.358885 | 1.1:+79281202 | MS.gene76222:CDS |
| TTTGGAGAAAGGTGAGGTTA+TGG | 0.393881 | 1.1:+79281384 | MS.gene76222:CDS |
| TGAAAATGCACAAGTCCTCT+TGG | 0.414763 | 1.1:-79281412 | None:intergenic |
| AACAGAAGTTGCTATTGTAT+TGG | 0.415183 | 1.1:+79281306 | MS.gene76222:CDS |
| GCTATGCAGTAATCCATAAC+AGG | 0.434646 | 1.1:-79281058 | None:intergenic |
| ATAGCAACTTCTGTTGCTCT+TGG | 0.436530 | 1.1:-79281298 | None:intergenic |
| CAGTAATCCATAACAGGATC+CGG | 0.469062 | 1.1:-79281052 | None:intergenic |
| TTTCCAGGTTTAAACACTCT+TGG | 0.469660 | 1.1:+79281217 | MS.gene76222:CDS |
| CAGCAATGATGAAACACATA+AGG | 0.504374 | 1.1:-79281015 | None:intergenic |
| ACACATAAGGACTAAAAGAA+TGG | 0.521199 | 1.1:-79281002 | None:intergenic |
| AGAAGTTGCTATTGTATTGG+AGG | 0.525508 | 1.1:+79281309 | MS.gene76222:CDS |
| GAAGTTGCTATTGTATTGGA+GGG | 0.550409 | 1.1:+79281310 | MS.gene76222:CDS |
| ACTCCAAGAGTGTTTAAACC+TGG | 0.567991 | 1.1:-79281220 | None:intergenic |
| GAAATCTTCAACTGTTGCTG+TGG | 0.571728 | 1.1:-79281119 | None:intergenic |
| AGCTTTCTAAGTTAAAGAAG+AGG | 0.576087 | 1.1:+79281578 | MS.gene76222:CDS |
| GTTGCTCTTGGATGAAAGTG+AGG | 0.622903 | 1.1:-79281286 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAATTCCAAATGTTGTTTT+TGG | + | chr1.1:79281502-79281521 | MS.gene76222:CDS | 20.0% |
| !! | CAAGATTTTTGCTAAAGTTT+TGG | + | chr1.1:79281366-79281385 | MS.gene76222:CDS | 25.0% |
| !!! | GAATTTGTTATCTTCTGATT+TGG | - | chr1.1:79281083-79281102 | None:intergenic | 25.0% |
| AAACTACCAAAAATAGTAGC+AGG | - | chr1.1:79281457-79281476 | None:intergenic | 30.0% | |
| ACACATAAGGACTAAAAGAA+TGG | - | chr1.1:79281005-79281024 | None:intergenic | 30.0% | |
| AGCTTTCTAAGTTAAAGAAG+AGG | + | chr1.1:79281578-79281597 | MS.gene76222:CDS | 30.0% | |
| TGAGATCCAAAAACAACATT+TGG | - | chr1.1:79281511-79281530 | None:intergenic | 30.0% | |
| TTGGAGGGAAAAATTTATTC+AGG | + | chr1.1:79281325-79281344 | MS.gene76222:CDS | 30.0% | |
| ! | AACAGAAGTTGCTATTGTAT+TGG | + | chr1.1:79281306-79281325 | MS.gene76222:CDS | 30.0% |
| ! | AGAAACTGGATTTTCTTCAA+TGG | + | chr1.1:79281177-79281196 | MS.gene76222:CDS | 30.0% |
| ! | AGCTTTTGGACTTAATTCTA+AGG | + | chr1.1:79281555-79281574 | MS.gene76222:CDS | 30.0% |
| ! | GAAACTGGATTTTCTTCAAT+GGG | + | chr1.1:79281178-79281197 | MS.gene76222:CDS | 30.0% |
| ! | TCAGATTAAAGATGAGCTTT+TGG | + | chr1.1:79281528-79281547 | MS.gene76222:CDS | 30.0% |
| !! | AGTTTTGATAGTCAAAATCC+TGG | + | chr1.1:79281472-79281491 | MS.gene76222:CDS | 30.0% |
| !! | TTTGGAATTTTCATCAAACC+AGG | - | chr1.1:79281493-79281512 | None:intergenic | 30.0% |
| !! | TTTTCTGGTATAAAACTACC+AGG | + | chr1.1:79281145-79281164 | MS.gene76222:CDS | 30.0% |
| !!! | GTTGAAGATTTCACTTTTTC+TGG | + | chr1.1:79281130-79281149 | MS.gene76222:CDS | 30.0% |
| !!! | TTTGCTAAAGTTTTGGAGAA+AGG | + | chr1.1:79281373-79281392 | MS.gene76222:CDS | 30.0% |
| CAGCAATGATGAAACACATA+AGG | - | chr1.1:79281018-79281037 | None:intergenic | 35.0% | |
| GTGAATTCAAATGTGTTTCC+AGG | + | chr1.1:79281202-79281221 | MS.gene76222:CDS | 35.0% | |
| TTTCCAGGTTTAAACACTCT+TGG | + | chr1.1:79281217-79281236 | MS.gene76222:CDS | 35.0% | |
| ! | AGAAGTTGCTATTGTATTGG+AGG | + | chr1.1:79281309-79281328 | MS.gene76222:CDS | 35.0% |
| ! | GAAGTTGCTATTGTATTGGA+GGG | + | chr1.1:79281310-79281329 | MS.gene76222:CDS | 35.0% |
| ! | GATGTTCCTGCTACTATTTT+TGG | + | chr1.1:79281448-79281467 | MS.gene76222:CDS | 35.0% |
| ! | GTGCATTTTCAGATGAATGT+TGG | + | chr1.1:79281424-79281443 | MS.gene76222:CDS | 35.0% |
| !! | GAGCTTTTGGAAAAAGCTTT+TGG | + | chr1.1:79281541-79281560 | MS.gene76222:CDS | 35.0% |
| !! | GTTAGAGCAGATTTTGATGT+TGG | + | chr1.1:79281250-79281269 | MS.gene76222:CDS | 35.0% |
| !!! | TAAAGTTTTGGAGAAAGGTG+AGG | + | chr1.1:79281378-79281397 | MS.gene76222:CDS | 35.0% |
| ATAGCAACTTCTGTTGCTCT+TGG | - | chr1.1:79281301-79281320 | None:intergenic | 40.0% | |
| CAGTAATCCATAACAGGATC+CGG | - | chr1.1:79281055-79281074 | None:intergenic | 40.0% | |
| CCAGGAAACTTCAAAGAAAC+TGG | + | chr1.1:79281163-79281182 | MS.gene76222:CDS | 40.0% | |
| GAAATCTTCAACTGTTGCTG+TGG | - | chr1.1:79281122-79281141 | None:intergenic | 40.0% | |
| GCTATGCAGTAATCCATAAC+AGG | - | chr1.1:79281061-79281080 | None:intergenic | 40.0% | |
| TGAAAATGCACAAGTCCTCT+TGG | - | chr1.1:79281415-79281434 | None:intergenic | 40.0% | |
| TTTGGAGAAAGGTGAGGTTA+TGG | + | chr1.1:79281384-79281403 | MS.gene76222:CDS | 40.0% | |
| ! | GAGGTTATGGTTTTTCCAAG+AGG | + | chr1.1:79281397-79281416 | MS.gene76222:CDS | 40.0% |
| !! | ACTCCAAGAGTGTTTAAACC+TGG | - | chr1.1:79281223-79281242 | None:intergenic | 40.0% |
| !! | AGAGCAGATTTTGATGTTGG+TGG | + | chr1.1:79281253-79281272 | MS.gene76222:CDS | 40.0% |
| !! | CCAGTTTCTTTGAAGTTTCC+TGG | - | chr1.1:79281166-79281185 | None:intergenic | 40.0% |
| !!! | TGCTGCTTTTTGTTCTGATC+CGG | + | chr1.1:79281033-79281052 | MS.gene76222:CDS | 40.0% |
| GTTGCTCTTGGATGAAAGTG+AGG | - | chr1.1:79281289-79281308 | None:intergenic | 45.0% | |
| TTCTGATCCGGATCCTGTTA+TGG | + | chr1.1:79281045-79281064 | MS.gene76222:CDS | 45.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 79280983 | 79281615 | 79280983 | ID=MS.gene76222 |
| chr1.1 | mRNA | 79280983 | 79281615 | 79280983 | ID=MS.gene76222.t1;Parent=MS.gene76222 |
| chr1.1 | exon | 79280983 | 79281615 | 79280983 | ID=MS.gene76222.t1.exon1;Parent=MS.gene76222.t1 |
| chr1.1 | CDS | 79280983 | 79281615 | 79280983 | ID=cds.MS.gene76222.t1;Parent=MS.gene76222.t1 |
| Gene Sequence |
| Protein sequence |
