AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene060870


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene060870.t1 MTR_4g009540 77.500 80 18 0 3 82 146 225 2.97e-37 127
MS.gene060870.t1 MTR_4g009540 77.500 80 18 0 3 82 146 225 4.33e-37 128
MS.gene060870.t1 MTR_4g009110 62.037 108 41 0 3 110 168 275 1.06e-36 127
MS.gene060870.t1 MTR_2g104550 72.581 62 17 0 3 64 132 193 1.47e-24 94.7
MS.gene060870.t1 MTR_2g104490 61.842 76 29 0 3 78 131 206 1.30e-23 92.0
MS.gene060870.t1 MTR_2g104490 61.842 76 29 0 3 78 131 206 1.38e-23 92.4
MS.gene060870.t1 MTR_8g009020 68.750 64 20 0 1 64 135 198 2.03e-23 92.0
MS.gene060870.t1 MTR_8g009010 76.786 56 13 0 9 64 134 189 6.54e-23 90.5
MS.gene060870.t1 MTR_2g104500 50.649 77 38 0 8 84 103 179 2.59e-19 80.5
MS.gene060870.t1 MTR_4g097940 42.478 113 43 2 6 110 152 250 3.07e-19 80.9
MS.gene060870.t1 MTR_2g104560 65.455 55 19 0 10 64 55 109 3.28e-19 79.3
MS.gene060870.t1 MTR_0246s0020 60.000 65 26 0 9 73 198 262 1.08e-18 79.7
MS.gene060870.t1 MTR_0246s0020 60.000 65 26 0 9 73 198 262 1.09e-18 79.7
MS.gene060870.t1 MTR_0250s0040 52.174 69 33 0 4 72 83 151 1.50e-18 78.2
MS.gene060870.t1 MTR_2g104530 46.429 84 45 0 1 84 97 180 3.52e-18 77.4
MS.gene060870.t1 MTR_2g104590 48.718 78 39 1 3 79 63 140 4.02e-18 76.6
MS.gene060870.t1 MTR_4g097920 43.158 95 46 1 6 92 137 231 1.43e-17 76.3
MS.gene060870.t1 MTR_5g014520 58.462 65 27 0 9 73 157 221 1.64e-17 76.3
MS.gene060870.t1 MTR_4g097920 43.158 95 46 1 6 92 152 246 1.65e-17 76.3
MS.gene060870.t1 MTR_5g014600 53.731 67 31 0 9 75 149 215 1.92e-17 75.9
MS.gene060870.t1 MTR_7g080780 58.929 56 23 0 9 64 165 220 3.18e-17 75.5
MS.gene060870.t1 MTR_7g080780 55.932 59 26 0 9 67 152 210 3.20e-17 75.1
MS.gene060870.t1 MTR_6g047550 52.308 65 31 0 9 73 173 237 6.00e-17 73.9
MS.gene060870.t1 MTR_5g014640 53.968 63 29 0 5 67 150 212 6.19e-17 74.7
MS.gene060870.t1 MTR_2g010450 54.839 62 28 0 5 66 173 234 1.34e-16 73.9
MS.gene060870.t1 MTR_4g097950 60.000 60 24 0 9 68 70 129 1.51e-16 72.8
MS.gene060870.t1 MTR_4g092700 56.140 57 25 0 9 65 158 214 2.56e-16 72.8
MS.gene060870.t1 MTR_8g069740 55.932 59 26 0 3 61 106 164 7.98e-16 70.9
MS.gene060870.t1 MTR_0011s0260 58.929 56 23 0 9 64 183 238 1.02e-15 71.2
MS.gene060870.t1 MTR_6g047570 53.125 64 30 0 9 72 159 222 1.08e-15 71.2
MS.gene060870.t1 MTR_0011s0210 58.929 56 23 0 9 64 183 238 1.17e-15 71.2
MS.gene060870.t1 MTR_0246s0050 48.052 77 38 1 9 83 151 227 4.46e-15 69.3
MS.gene060870.t1 MTR_4g067010 46.250 80 38 1 9 83 147 226 4.61e-15 69.3
MS.gene060870.t1 MTR_4g098035 48.052 77 38 1 9 83 172 248 4.71e-15 69.3
MS.gene060870.t1 MTR_5g014560 52.857 70 32 1 9 77 131 200 4.75e-15 69.3
MS.gene060870.t1 MTR_4g066460 55.357 56 25 0 9 64 155 210 1.01e-14 68.6
MS.gene060870.t1 MTR_4g066380 55.357 56 25 0 9 64 153 208 1.77e-14 67.8
MS.gene060870.t1 MTR_8g024790 44.262 61 33 1 3 62 284 344 7.51e-14 66.2
MS.gene060870.t1 MTR_8g027495 41.538 65 38 0 8 72 457 521 9.28e-14 66.2
MS.gene060870.t1 MTR_8g067280 39.326 89 44 2 6 84 459 547 1.47e-13 65.5
MS.gene060870.t1 MTR_8g098275 40.000 65 39 0 8 72 307 371 2.64e-13 64.7
MS.gene060870.t1 MTR_8g098275 40.000 65 39 0 8 72 243 307 2.71e-13 64.7
MS.gene060870.t1 MTR_8g098275 40.000 65 39 0 8 72 400 464 2.94e-13 64.7
MS.gene060870.t1 MTR_1g072320 43.333 60 34 0 9 68 470 529 6.52e-13 63.5
MS.gene060870.t1 MTR_8g024770 43.939 66 34 2 4 66 273 338 6.94e-13 63.5
MS.gene060870.t1 MTR_7g117670 35.366 82 45 1 8 81 401 482 4.37e-12 61.2
MS.gene060870.t1 MTR_5g030430 39.683 63 38 0 6 68 490 552 4.66e-12 61.2
MS.gene060870.t1 MTR_2g104650 55.102 49 22 0 5 53 90 138 9.18e-12 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene060870.t1 AT2G22770 60.714 56 22 0 9 64 132 187 6.75e-18 77.0
MS.gene060870.t1 AT4G37850 50.685 73 36 0 5 77 148 220 1.61e-17 76.3
MS.gene060870.t1 AT4G37850 50.685 73 36 0 5 77 148 220 1.61e-17 76.3
MS.gene060870.t1 AT2G22760 55.172 58 26 0 9 66 119 176 3.85e-15 69.3
MS.gene060870.t1 AT2G22760 55.172 58 26 0 9 66 119 176 3.88e-15 69.3
MS.gene060870.t1 AT2G22750 57.407 54 23 0 5 58 122 175 7.74e-15 68.6
MS.gene060870.t1 AT2G22750 57.407 54 23 0 5 58 122 175 7.77e-15 68.6
MS.gene060870.t1 AT2G22750 57.407 54 23 0 5 58 150 203 8.76e-15 68.6
MS.gene060870.t1 AT2G22750 57.407 54 23 0 5 58 150 203 9.07e-15 68.6
MS.gene060870.t1 AT2G22750 57.407 54 23 0 5 58 146 199 9.07e-15 68.6
MS.gene060870.t1 AT2G46510 36.735 98 53 4 8 100 394 487 2.16e-12 62.4
MS.gene060870.t1 AT1G01260 35.294 68 44 0 5 72 429 496 3.96e-12 61.6
MS.gene060870.t1 AT1G01260 35.294 68 44 0 5 72 429 496 3.96e-12 61.6
MS.gene060870.t1 AT1G01260 35.294 68 44 0 5 72 429 496 3.96e-12 61.6
MS.gene060870.t1 AT4G17880 42.373 59 34 0 8 66 415 473 4.28e-12 61.2
MS.gene060870.t1 AT4G09820 49.091 55 28 0 8 62 362 416 4.39e-12 61.2
MS.gene060870.t1 AT5G46760 39.344 61 37 0 8 68 414 474 9.06e-12 60.5
MS.gene060870.t1 AT1G32640 44.828 58 32 0 8 65 451 508 1.71e-11 59.7
MS.gene060870.t1 AT1G12860 38.806 67 41 0 10 76 268 334 1.85e-11 59.7
MS.gene060870.t1 AT1G12860 38.806 67 41 0 10 76 268 334 2.14e-11 59.3
MS.gene060870.t1 AT1G63650 43.333 60 34 0 9 68 405 464 2.77e-11 58.9
MS.gene060870.t1 AT1G63650 43.333 60 34 0 9 68 405 464 2.77e-11 58.9
MS.gene060870.t1 AT1G63650 43.333 60 34 0 9 68 405 464 2.77e-11 58.9

Find 14 sgRNAs with CRISPR-Local

Find 191 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGACTCTTGCTTCAATATC+TGG 0.232796 4.1:-86339769 None:intergenic
GCACTTTCAGCTACTATTCC+TGG 0.324686 4.1:+86336498 MS.gene060870:CDS
AATATCTGGAAGGGATACTA+TGG 0.403269 4.1:-86339755 None:intergenic
AGAAACAAGAAGAAAATGTT+GGG 0.406463 4.1:+86339641 MS.gene060870:CDS
CAATTTACCTTGCTCAAGCC+AGG 0.465848 4.1:-86336516 None:intergenic
ACAGTGTATTGATCATATAA+TGG 0.475067 4.1:+86336434 MS.gene060870:CDS
GAGAAACAAGAAGAAAATGT+TGG 0.486811 4.1:+86339640 MS.gene060870:CDS
ATATAATGGCAGAGAGAAAA+CGG 0.495978 4.1:+86336448 MS.gene060870:CDS
GAGCTAAGAAAGGTAGAAGC+AGG 0.521868 4.1:+86336408 None:intergenic
CTCTTGCTTCAATATCTGGA+AGG 0.560030 4.1:-86339765 None:intergenic
TACTATTCCTGGCTTGAGCA+AGG 0.585542 4.1:+86336509 MS.gene060870:CDS
AAAGCTTCAATACTTCAAGC+AGG 0.588462 4.1:+86339574 MS.gene060870:CDS
TCTTGCTTCAATATCTGGAA+GGG 0.590700 4.1:-86339764 None:intergenic
GAAACAAGAAGAAAATGTTG+GGG 0.696078 4.1:+86339642 MS.gene060870:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATAATATATATAAAAAAA+TGG + chr4.1:86336638-86336657 MS.gene060870:intron 0.0%
!! AAGAAAATGTATAAATAAAA+GGG - chr4.1:86337721-86337740 None:intergenic 10.0%
!! TAAGAAAATGTATAAATAAA+AGG - chr4.1:86337722-86337741 None:intergenic 10.0%
!!! CACATTTTTATATATAAAAA+AGG - chr4.1:86337882-86337901 None:intergenic 10.0%
!!! CTTTTTTATATATAAAAATG+TGG + chr4.1:86337880-86337899 MS.gene060870:intron 10.0%
!!! GTCAATTTTTTTTTTTTAAT+TGG + chr4.1:86338241-86338260 MS.gene060870:intron 10.0%
!!! TATTAAATAATTAGTTTCAT+CGG + chr4.1:86336575-86336594 MS.gene060870:intron 10.0%
!! AAAAAAAATTGATACAAAAG+AGG - chr4.1:86339508-86339527 None:intergenic 15.0%
!! AAAAAAATTGATACAAAAGA+GGG - chr4.1:86339507-86339526 None:intergenic 15.0%
!! AATATTTCTTCAAATAACTA+AGG - chr4.1:86339322-86339341 None:intergenic 15.0%
!! ACTAATTATTTAATATGAGA+TGG - chr4.1:86336570-86336589 None:intergenic 15.0%
!! ATATTTCTTCAAATAACTAA+GGG - chr4.1:86339321-86339340 None:intergenic 15.0%
!! TAATACGATGAAATAAAATA+AGG - chr4.1:86339395-86339414 None:intergenic 15.0%
!! TATTAGTGTTATATTGTATT+GGG - chr4.1:86337658-86337677 None:intergenic 15.0%
!! TCAAAATAAATATAAACCAT+TGG - chr4.1:86339181-86339200 None:intergenic 15.0%
!! TGTAAATTAATAAATTTCTC+CGG + chr4.1:86338069-86338088 MS.gene060870:intron 15.0%
!! TTATTAGTGTTATATTGTAT+TGG - chr4.1:86337659-86337678 None:intergenic 15.0%
!!! AATGCATCTTTTTAAATTTT+TGG - chr4.1:86337818-86337837 None:intergenic 15.0%
!!! TATTTTATGATCATAGATTA+GGG - chr4.1:86337210-86337229 None:intergenic 15.0%
!!! TGATTTTTAATTTTATTTGC+TGG + chr4.1:86338870-86338889 MS.gene060870:intron 15.0%
!! AAAAAATAGTTGAAAGCAAT+TGG + chr4.1:86339103-86339122 MS.gene060870:intron 20.0%
!! AAAAATAGTTGAAAGCAATT+GGG + chr4.1:86339104-86339123 MS.gene060870:intron 20.0%
!! AACTAAAATTATTTCGAACA+AGG + chr4.1:86338171-86338190 MS.gene060870:intron 20.0%
!! AATTATTTAATATGAGATGG+AGG - chr4.1:86336567-86336586 None:intergenic 20.0%
!! ACAAATTGTGTCAATTAAAT+TGG + chr4.1:86337755-86337774 MS.gene060870:intron 20.0%
!! ACTAAAATTATTTCGAACAA+GGG + chr4.1:86338172-86338191 MS.gene060870:intron 20.0%
!! AGTTATTCAAAAAAGTTAAG+AGG + chr4.1:86337949-86337968 MS.gene060870:intron 20.0%
!! CAAATTGTGTCAATTAAATT+GGG + chr4.1:86337756-86337775 MS.gene060870:intron 20.0%
!! GTTATTCAAAAAAGTTAAGA+GGG + chr4.1:86337950-86337969 MS.gene060870:intron 20.0%
!! TAAATTAATAATGTCATGAC+CGG - chr4.1:86338091-86338110 None:intergenic 20.0%
!! TATTGTGTAGATTATTTGAA+AGG - chr4.1:86337082-86337101 None:intergenic 20.0%
!! TGACCAAAAAATTGTTTAAT+GGG - chr4.1:86338535-86338554 None:intergenic 20.0%
!! TTGACCAAAAAATTGTTTAA+TGG - chr4.1:86338536-86338555 None:intergenic 20.0%
!!! AAAAAAAATTGACTTACGTA+TGG - chr4.1:86338234-86338253 None:intergenic 20.0%
!!! AAAAAGATGCATTAACTTTT+TGG + chr4.1:86337825-86337844 MS.gene060870:intron 20.0%
!!! AAACCCATTAAACAATTTTT+TGG + chr4.1:86338529-86338548 MS.gene060870:intron 20.0%
!!! AATGTCAATTTCAAGTTTAA+TGG + chr4.1:86339363-86339382 MS.gene060870:intron 20.0%
!!! AATTTCATTTCTTTTCTCTT+AGG + chr4.1:86339476-86339495 MS.gene060870:intron 20.0%
!!! ATGATTTGATAATCATGAAA+AGG + chr4.1:86337442-86337461 MS.gene060870:intron 20.0%
!!! ATTTGGATTTGATTTTTAGT+TGG - chr4.1:86338417-86338436 None:intergenic 20.0%
!!! CAATTGGTTTCAATTTTTTT+GGG + chr4.1:86338961-86338980 MS.gene060870:intron 20.0%
!!! GACTTGTTAAAAAATAATTC+TGG + chr4.1:86338924-86338943 MS.gene060870:intron 20.0%
!!! GTATTTTATGATCATAGATT+AGG - chr4.1:86337211-86337230 None:intergenic 20.0%
!!! TCAATTATTGATGGATATTA+AGG + chr4.1:86338270-86338289 MS.gene060870:intron 20.0%
!!! TCGAATTTTTAAGAATAAAC+AGG - chr4.1:86337049-86337068 None:intergenic 20.0%
!!! TTTTTTTTAAGAAGCCAAAA+AGG + chr4.1:86336808-86336827 MS.gene060870:intron 20.0%
! AATGGTAACATATAAGATGT+TGG + chr4.1:86336656-86336675 MS.gene060870:intron 25.0%
! AGAAACAAGAAGAAAATGTT+GGG + chr4.1:86339641-86339660 MS.gene060870:CDS 25.0%
! CTTAATAGTTTAACCTTTCA+AGG - chr4.1:86338832-86338851 None:intergenic 25.0%
! GAAAGTGGAATATATTGTAT+TGG - chr4.1:86337699-86337718 None:intergenic 25.0%
! GGAGGTAGTATAATTTATTA+GGG - chr4.1:86336549-86336568 None:intergenic 25.0%
! TGGAGGTAGTATAATTTATT+AGG - chr4.1:86336550-86336569 None:intergenic 25.0%
! TGGTACATAATAAGAAATCA+TGG - chr4.1:86338298-86338317 None:intergenic 25.0%
! TGTATAAATAAAAGGGAAAG+TGG - chr4.1:86337714-86337733 None:intergenic 25.0%
! TGTATTGTTAAAATCACATG+TGG + chr4.1:86337907-86337926 MS.gene060870:intron 25.0%
! TTAATCATACTGACGTATAT+AGG - chr4.1:86337510-86337529 None:intergenic 25.0%
! TTGTTCAAAAAAAAAGATGC+TGG - chr4.1:86338725-86338744 None:intergenic 25.0%
!! ACAGTGTATTGATCATATAA+TGG + chr4.1:86336434-86336453 MS.gene060870:CDS 25.0%
!! ATCATATTTTCTGAGTTGTT+TGG - chr4.1:86337250-86337269 None:intergenic 25.0%
!! ATTGAAATGAGTCAGTATTT+TGG - chr4.1:86337613-86337632 None:intergenic 25.0%
!! CGGTTAATATATTTCCTTTT+TGG - chr4.1:86336825-86336844 None:intergenic 25.0%
!! TTGAAATGAGTCAGTATTTT+GGG - chr4.1:86337612-86337631 None:intergenic 25.0%
!!! AGAGTTTTAACTGTATTAGA+GGG + chr4.1:86338112-86338131 MS.gene060870:intron 25.0%
!!! ATGAATTTTGTGATTTGTTG+AGG - chr4.1:86339681-86339700 None:intergenic 25.0%
!!! ATTTTTTAACAAGTCTGCAA+AGG - chr4.1:86338919-86338938 None:intergenic 25.0%
!!! GACTAATTTGTCTTTTTGTT+TGG + chr4.1:86337976-86337995 MS.gene060870:intron 25.0%
!!! GCAATTGGTTTCAATTTTTT+TGG + chr4.1:86338960-86338979 MS.gene060870:intron 25.0%
!!! TAGAGTTTTAACTGTATTAG+AGG + chr4.1:86338111-86338130 MS.gene060870:intron 25.0%
!!! TGAATTTTGTGATTTGTTGA+GGG - chr4.1:86339680-86339699 None:intergenic 25.0%
AAAAAAAACCATGTCTCCTA+CGG + chr4.1:86339210-86339229 MS.gene060870:intron 30.0%
AAAGAGTTGCAATGAAAGAA+AGG - chr4.1:86338352-86338371 None:intergenic 30.0%
AACATGCATTAAGAAGAGAA+TGG - chr4.1:86338485-86338504 None:intergenic 30.0%
AAGAGTTGCAATGAAAGAAA+GGG - chr4.1:86338351-86338370 None:intergenic 30.0%
AATTCCCATATGTTGAAACA+TGG + chr4.1:86338434-86338453 MS.gene060870:intron 30.0%
ACATGTGCAAATCAACTATA+TGG + chr4.1:86339437-86339456 MS.gene060870:intron 30.0%
ATATAATGGCAGAGAGAAAA+CGG + chr4.1:86336448-86336467 MS.gene060870:CDS 30.0%
ATCAAGATAAGATCAAGTGT+AGG + chr4.1:86336893-86336912 MS.gene060870:intron 30.0%
ATTCATTGATGAGAGAAAGA+GGG + chr4.1:86339065-86339084 MS.gene060870:intron 30.0%
GAAACAAGAAGAAAATGTTG+GGG + chr4.1:86339642-86339661 MS.gene060870:CDS 30.0%
GAGAAACAAGAAGAAAATGT+TGG + chr4.1:86339640-86339659 MS.gene060870:CDS 30.0%
TACACAATAACTAGCCAAAT+TGG + chr4.1:86337093-86337112 MS.gene060870:intron 30.0%
TATTCATTGATGAGAGAAAG+AGG + chr4.1:86339064-86339083 MS.gene060870:intron 30.0%
TCCAATTTGGCAATTTAAGA+GGG - chr4.1:86337149-86337168 None:intergenic 30.0%
TGGTCAAGTTCAATTATTGA+TGG + chr4.1:86338261-86338280 MS.gene060870:intron 30.0%
TGTTTCAACATATGGGAATT+TGG - chr4.1:86338434-86338453 None:intergenic 30.0%
TTGTGTCAATTAAATTGGGA+CGG + chr4.1:86337760-86337779 MS.gene060870:intron 30.0%
TTTGCCATGTTTCAACATAT+GGG - chr4.1:86338441-86338460 None:intergenic 30.0%
! AAATTGACTTACGTATGGTA+CGG - chr4.1:86338229-86338248 None:intergenic 30.0%
! AGTCTAGTTTACATCCAATT+TGG - chr4.1:86337110-86337129 None:intergenic 30.0%
! ATAAAAAAGGTACAATCACG+TGG - chr4.1:86337869-86337888 None:intergenic 30.0%
! TGTCTTTTGATCTTTAGTTG+TGG - chr4.1:86336953-86336972 None:intergenic 30.0%
!! TGTTTAATGGGTTTGATTTG+CGG - chr4.1:86338523-86338542 None:intergenic 30.0%
!!! TTTGATTTTTAGTTGGTTCC+TGG - chr4.1:86338410-86338429 None:intergenic 30.0%
AAAGCTTCAATACTTCAAGC+AGG + chr4.1:86339574-86339593 MS.gene060870:CDS 35.0%
AAGTGTCAGTTATTCCAAGA+CGG - chr4.1:86337573-86337592 None:intergenic 35.0%
AATATCTGGAAGGGATACTA+TGG - chr4.1:86339758-86339777 None:intergenic 35.0%
ACAAAACTCATACAAGCGAT+AGG + chr4.1:86336918-86336937 MS.gene060870:intron 35.0%
ACAATCACGTGGTTTATGAT+GGG - chr4.1:86337858-86337877 None:intergenic 35.0%
ACCCTCTTAAATTGCCAAAT+TGG + chr4.1:86337145-86337164 MS.gene060870:intron 35.0%
ACGTATATAGGTATGACTGA+AGG - chr4.1:86337498-86337517 None:intergenic 35.0%
ATGCATTAAGAAGAGAATGG+TGG - chr4.1:86338482-86338501 None:intergenic 35.0%
CAAAACTCATACAAGCGATA+GGG + chr4.1:86336919-86336938 MS.gene060870:intron 35.0%
CAACAACCAGCATCTTAAAA+TGG + chr4.1:86338745-86338764 MS.gene060870:intron 35.0%
CATATGTTGAAACATGGCAA+AGG + chr4.1:86338440-86338459 MS.gene060870:intron 35.0%
CTCCAATTTGGCAATTTAAG+AGG - chr4.1:86337150-86337169 None:intergenic 35.0%
CTTGTATGTGTTTCCGAAAT+AGG - chr4.1:86337309-86337328 None:intergenic 35.0%
CTTTGCCATGTTTCAACATA+TGG - chr4.1:86338442-86338461 None:intergenic 35.0%
GCTAGTTAACTTTCATCCAA+TGG + chr4.1:86339162-86339181 MS.gene060870:intron 35.0%
GGATTTGTGAATGTAGCAAT+TGG + chr4.1:86338945-86338964 MS.gene060870:intron 35.0%
TACAATCACGTGGTTTATGA+TGG - chr4.1:86337859-86337878 None:intergenic 35.0%
TATGTGTTTCCGAAATAGGA+CGG - chr4.1:86337305-86337324 None:intergenic 35.0%
TCTTGCTTCAATATCTGGAA+GGG - chr4.1:86339767-86339786 None:intergenic 35.0%
! AATTGACTTACGTATGGTAC+GGG - chr4.1:86338228-86338247 None:intergenic 35.0%
! CTTTTGATCTTTAGTTGTGG+TGG - chr4.1:86336950-86336969 None:intergenic 35.0%
! GAGAAAGTATGTCAAACTTG+CGG - chr4.1:86338672-86338691 None:intergenic 35.0%
! GATGAAAGTTAACTAGCTCT+TGG - chr4.1:86339159-86339178 None:intergenic 35.0%
!! AAAGAGTATCCGTCCTATTT+CGG + chr4.1:86337293-86337312 MS.gene060870:intron 35.0%
!!! CTGGTTATTTTTATCCTGTG+AGG + chr4.1:86338889-86338908 MS.gene060870:intron 35.0%
!!! GTTCTACCATTTTAAGATGC+TGG - chr4.1:86338754-86338773 None:intergenic 35.0%
AAAGTATGTCAAACTTGCGG+TGG - chr4.1:86338669-86338688 None:intergenic 40.0%
AGTTGAAAGCAATTGGGTGT+TGG + chr4.1:86339110-86339129 MS.gene060870:intron 40.0%
GCGAGTTTGTCATTCATGAA+GGG + chr4.1:86338603-86338622 MS.gene060870:intron 40.0%
GGAGAAAGTTCAAGTGTGTA+TGG - chr4.1:86338318-86338337 None:intergenic 40.0%
GTCAATTAAATTGGGACGGA+GGG + chr4.1:86337764-86337783 MS.gene060870:intron 40.0%
GTTGCAATGAAAGAAAGGGA+TGG - chr4.1:86338347-86338366 None:intergenic 40.0%
TAGGACGGATACTCTTTGTT+CGG - chr4.1:86337290-86337309 None:intergenic 40.0%
TGATAACAATGATGCTCCAC+TGG + chr4.1:86337470-86337489 MS.gene060870:intron 40.0%
TGCGAGTTTGTCATTCATGA+AGG + chr4.1:86338602-86338621 MS.gene060870:intron 40.0%
TGTCAATTAAATTGGGACGG+AGG + chr4.1:86337763-86337782 MS.gene060870:intron 40.0%
TTTAATAGGTCTCCTACCGT+AGG - chr4.1:86339229-86339248 None:intergenic 40.0%
! ATGCTGGTTGTTGTAGTCAT+GGG - chr4.1:86338709-86338728 None:intergenic 40.0%
! GAGGGAAGCTGTAGAATTTT+TGG + chr4.1:86338130-86338149 MS.gene060870:intron 40.0%
! TGTCTGGTTCATACCTTGAA+AGG + chr4.1:86338816-86338835 MS.gene060870:intron 40.0%
!! GTTTGGTCTTCGATGGATTA+TGG - chr4.1:86337233-86337252 None:intergenic 40.0%
AAAACCATGTCTCCTACGGT+AGG + chr4.1:86339214-86339233 MS.gene060870:intron 45.0%
ACGCCATAATTAGAGTTCGC+GGG + chr4.1:86338563-86338582 MS.gene060870:intron 45.0%
AGGACGGATACTCTTTGTTC+GGG - chr4.1:86337289-86337308 None:intergenic 45.0%
CAAATGCTCAAACAGGTGTC+TGG + chr4.1:86338800-86338819 MS.gene060870:intron 45.0%
CAATTTACCTTGCTCAAGCC+AGG - chr4.1:86336519-86336538 None:intergenic 45.0%
CTACGGTGGGAGACTTTAAT+AGG - chr4.1:86339243-86339262 None:intergenic 45.0%
CTCTGAGCAGTTCTCCAATT+TGG - chr4.1:86337162-86337181 None:intergenic 45.0%
GAAAGAAAGGGATGGTCAGT+TGG - chr4.1:86338339-86338358 None:intergenic 45.0%
GAAGCCTCAAATGCTCAAAC+AGG + chr4.1:86338793-86338812 MS.gene060870:intron 45.0%
GACACCTGTTTGAGCATTTG+AGG - chr4.1:86338800-86338819 None:intergenic 45.0%
GACGCCATAATTAGAGTTCG+CGG + chr4.1:86338562-86338581 MS.gene060870:intron 45.0%
GCACTTTCAGCTACTATTCC+TGG + chr4.1:86336498-86336517 MS.gene060870:CDS 45.0%
GCCTCGAACAAGTCATCATT+CGG + chr4.1:86339268-86339287 MS.gene060870:intron 45.0%
GTCAGTTATTCCAAGACGGA+GGG - chr4.1:86337569-86337588 None:intergenic 45.0%
TAATTAGAGTTCGCGGGAGA+TGG + chr4.1:86338569-86338588 MS.gene060870:intron 45.0%
TCTCCCGCGAACTCTAATTA+TGG - chr4.1:86338569-86338588 None:intergenic 45.0%
TGGTTCCTGGTTGTTAGATC+TGG - chr4.1:86338397-86338416 None:intergenic 45.0%
TGTCAGTTATTCCAAGACGG+AGG - chr4.1:86337570-86337589 None:intergenic 45.0%
TTAAAGTCTCCCACCGTAGA+TGG + chr4.1:86339244-86339263 MS.gene060870:intron 45.0%
! ATCACGTGGTTTATGATGGG+CGG - chr4.1:86337855-86337874 None:intergenic 45.0%
! CTGAGTTGTTTGGTCTTCGA+TGG - chr4.1:86337240-86337259 None:intergenic 45.0%
! CTGGCTTGAGCAAGGTAAAT+TGG + chr4.1:86336517-86336536 MS.gene060870:intron 45.0%
! GAGAATGGTGGTGATTTCTG+TGG - chr4.1:86338470-86338489 None:intergenic 45.0%
! GATGCTGGTTGTTGTAGTCA+TGG - chr4.1:86338710-86338729 None:intergenic 45.0%
! TACTATTCCTGGCTTGAGCA+AGG + chr4.1:86336509-86336528 MS.gene060870:CDS 45.0%
! TGCTGGTTGTTGTAGTCATG+GGG - chr4.1:86338708-86338727 None:intergenic 45.0%
! TGTTGCTTACGGGGCATTAA+CGG - chr4.1:86336845-86336864 None:intergenic 45.0%
!! ACCGAATGATGACTTGTTCG+AGG - chr4.1:86339272-86339291 None:intergenic 45.0%
!! AGCACCCTATGTGTTGCTTA+CGG - chr4.1:86336856-86336875 None:intergenic 45.0%
!! TGAAAGCAATTGGGTGTTGG+AGG + chr4.1:86339113-86339132 MS.gene060870:intron 45.0%
ACGGAGGGAGTAATAGGACA+TGG - chr4.1:86337554-86337573 None:intergenic 50.0%
ACGGATACTCTTTGTTCGGG+TGG - chr4.1:86337286-86337305 None:intergenic 50.0%
ATGCCCCGTAAGCAACACAT+AGG + chr4.1:86336848-86336867 MS.gene060870:intron 50.0%
ATTTGCGGCGATCGTTGATG+AGG - chr4.1:86338508-86338527 None:intergenic 50.0%
CCACACCAGATCTAACAACC+AGG + chr4.1:86338389-86338408 MS.gene060870:intron 50.0%
CCTGGTTGTTAGATCTGGTG+TGG - chr4.1:86338392-86338411 None:intergenic 50.0%
CGGATACTCTTTGTTCGGGT+GGG - chr4.1:86337285-86337304 None:intergenic 50.0%
CTTGTTCGAGGCTCCATCTA+CGG - chr4.1:86339260-86339279 None:intergenic 50.0%
GGTATGACTGAAGGATCCAG+TGG - chr4.1:86337489-86337508 None:intergenic 50.0%
GTATGTCAAACTTGCGGTGG+TGG - chr4.1:86338666-86338685 None:intergenic 50.0%
TCCAAGACGGAGGGAGTAAT+AGG - chr4.1:86337560-86337579 None:intergenic 50.0%
TCCTATTACTCCCTCCGTCT+TGG + chr4.1:86337556-86337575 MS.gene060870:intron 50.0%
TCTGCAAAGGTTCACCTCAC+AGG - chr4.1:86338906-86338925 None:intergenic 50.0%
TGCCCCGTAAGCAACACATA+GGG + chr4.1:86336849-86336868 MS.gene060870:intron 50.0%
!! CACCCTATGTGTTGCTTACG+GGG - chr4.1:86336854-86336873 None:intergenic 50.0%
!! GCACCCTATGTGTTGCTTAC+GGG - chr4.1:86336855-86336874 None:intergenic 50.0%
!! TCACGTGGTTTATGATGGGC+GGG - chr4.1:86337854-86337873 None:intergenic 50.0%
GACCTATCACACTTGCGCAC+GGG - chr4.1:86338206-86338225 None:intergenic 55.0%
GGACCTATCACACTTGCGCA+CGG - chr4.1:86338207-86338226 None:intergenic 55.0%
GTCTCCTACCGTAGGAGACA+TGG - chr4.1:86339221-86339240 None:intergenic 55.0%
TTCGAGGCTCCATCTACGGT+GGG - chr4.1:86339256-86339275 None:intergenic 55.0%
!! CACGTGGTTTATGATGGGCG+GGG - chr4.1:86337853-86337872 None:intergenic 55.0%
CTCCCGTGCGCAAGTGTGAT+AGG + chr4.1:86338201-86338220 MS.gene060870:intron 60.0%
GTTCGAGGCTCCATCTACGG+TGG - chr4.1:86339257-86339276 None:intergenic 60.0%
TCACACTTGCGCACGGGAGA+CGG - chr4.1:86338200-86338219 None:intergenic 60.0%
ACACTTGCGCACGGGAGACG+GGG - chr4.1:86338198-86338217 None:intergenic 65.0%
CACACTTGCGCACGGGAGAC+GGG - chr4.1:86338199-86338218 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr4.1 gene 86336420 86339786 86336420 ID=MS.gene060870
chr4.1 mRNA 86336420 86339786 86336420 ID=MS.gene060870.t1;Parent=MS.gene060870
chr4.1 exon 86336420 86336530 86336420 ID=MS.gene060870.t1.exon1;Parent=MS.gene060870.t1
chr4.1 CDS 86336420 86336530 86336420 ID=cds.MS.gene060870.t1;Parent=MS.gene060870.t1
chr4.1 exon 86339568 86339786 86339568 ID=MS.gene060870.t1.exon2;Parent=MS.gene060870.t1
chr4.1 CDS 86339568 86339786 86339568 ID=cds.MS.gene060870.t1;Parent=MS.gene060870.t1
Gene Sequence

>MS.gene060870

GTAGAAGCAGGTTCACAGTGTATTGATCATATAATGGCAGAGAGAAAACGGAGACAAGAATTGTCTGAGAAATTCATTGCACTTTCAGCTACTATTCCTGGCTTGAGCAAGGTAAATTGGTAACTACCCTAATAAATTATACTACCTCCATCTCATATTAAATAATTAGTTTCATCGGATGCAGCATTCGTTTAACATATTTTGATCATATTTTTCTATTATAATATATATAAAAAAATGGTAACATATAAGATGTTGGAATTAATCATAGTTCAAAGTCTATGAAATCATATCGTAAACTTTTTATATAACTATCTAATTAATTGATTTTACTACAATCGAATTTACATAATCATATCATATGCTTTGTGTTTTGAATGTTGTGTTATTTTTTTTAAGAAGCCAAAAAGGAAATATATTAACCGTTAATGCCCCGTAAGCAACACATAGGGTGCTTGAAATGAGATTAAAGAATCAAGATAAGATCAAGTGTAGGTAACAAAACTCATACAAGCGATAGGGCTATGCCACCACAACTAAAGATCAAAAGACAAAACAATATATTTCGCTTTTAACAATGAGAATGTTAAAAGTTTTACTTTGTTCAAGAAGATGATGAGTCGCAACCTGTTTATTCTTAAAAATTCGAGCATTTTTTTCCTTTCAAATAATCTACACAATAACTAGCCAAATTGGATGTAAACTAGACTGAAGTTTCATCGAGTACCCTCTTAAATTGCCAAATTGGAGAACTGCTCAGAGATACGCAAAGAAAAGACTATTGAATCCCTAATCTATGATCATAAAATACCATAATCCATCGAAGACCAAACAACTCAGAAAATATGATCGATGTTCTGCACCCACCCGAACAAAGAGTATCCGTCCTATTTCGGAAACACATACAAGTTTAATACTTATAATATTTAATCTTTTGAAATATAAGTTAAATTACTTTATTTTTTATATACATTTTCTATAAAAAAAAAATATATTAATTAATTCAACATAAACAAAAAATTATGATTTGATAATCATGAAAAGGAAGACTGATAACAATGATGCTCCACTGGATCCTTCAGTCATACCTATATACGTCAGTATGATTAAACTCAGAAGAAGTATTGATTACCATGTCCTATTACTCCCTCCGTCTTGGAATAACTGACACTTTTCTAAAAAAAAGTGTCCCAAAATACTGACTCATTTCAATTTTCAATACAACTTTCATCATTCCCAATACAATATAACACTAATAATACTACTTTTATCATTTCCAATACAATATATTCCACTTTCCCTTTTATTTATACATTTTCTTAATATGTGTGAAAAACAAATTGTGTCAATTAAATTGGGACGGAGGGAGTATCTTATATATGATGACTTTTTGTACCAAAAATTTAAAAAGATGCATTAACTTTTTGGTACCCCGCCCATCATAAACCACGTGATTGTACCTTTTTTATATATAAAAATGTGGTTGTTGTATTGTTAAAATCACATGTGGACAAAACAAATAAATAAAGAGTTATTCAAAAAAGTTAAGAGGGATAGACTAATTTGTCTTTTTGTTTGGTATGTACATTATAATTACTTAAAAACTCTTTAAATTAATAATTATTAATTTATCGATAAATTAATAACTCTGTAAATTAATAAATTTCTCCGGTCATGACATTATTAATTTATAGAGTTTTAACTGTATTAGAGGGAAGCTGTAGAATTTTTGGTGTTAAACTCAGAAATCAAACTAAAATTATTTCGAACAAGGGCCCCGTCTCCCGTGCGCAAGTGTGATAGGTCCCGTACCATACGTAAGTCAATTTTTTTTTTTTAATTGGTCAAGTTCAATTATTGATGGATATTAAGGCTCCATGATTTCTTATTATGTACCATACACACTTGAACTTTCTCCAACTGACCATCCCTTTCTTTCATTGCAACTCTTTCGTTTATTCTATCAACACCACACCAGATCTAACAACCAGGAACCAACTAAAAATCAAATCCAAATTCCCATATGTTGAAACATGGCAAAGGCTAGCCACAGAAATCACCACCATTCTCTTCTTAATGCATGTTCCTCATCAACGATCGCCGCAAATCAAACCCATTAAACAATTTTTTGGTCAACTGTTCGACGCCATAATTAGAGTTCGCGGGAGATGGAAAATTCTGCTGCGAGTTTGTCATTCATGAAGGGTAATTAGAAAGATTCAACTTAGAACAAAATTGCAGATCCACCACCGCAAGTTTGACATACTTTCTCTTTTTTCAACAAACCCCATGACTACAACAACCAGCATCTTTTTTTTTGAACAACAACAACCAGCATCTTAAAATGGTAGAACTTCAATATAACACATAAAAGAAGCCTCAAATGCTCAAACAGGTGTCTGGTTCATACCTTGAAAGGTTAAACTATTAAGATATTTTGAAAAATGAAATGATTTTTAATTTTATTTGCTGGTTATTTTTATCCTGTGAGGTGAACCTTTGCAGACTTGTTAAAAAATAATTCTGGATTTGTGAATGTAGCAATTGGTTTCAATTTTTTTGGGTTTGTGAAAGCAATGAACAATTGACGTTCTGAGTTTTTTCAAGCAATTCTTCACTGTTCTTCTCATGTGTGATTATTCGATATTCATTGATGAGAGAAAGAGGGATCAGTGCAGAGAACAAAAAATAGTTGAAAGCAATTGGGTGTTGGAGGTGTACAGTAAGAATTTTAATCCAAGAGCTAGTTAACTTTCATCCAATGGTTTATATTTATTTTGAAAAAAAAAAAAAAAAAACCATGTCTCCTACGGTAGGAGACCTATTAAAGTCTCCCACCGTAGATGGAGCCTCGAACAAGTCATCATTCGGTAGAGTTTATTAACGATTAACTTCATTCCCTTAGTTATTTGAAGAAATATTATAATACTAGTAAATTAGCGCAATGTCAATTTCAAGTTTAATGGAAATATCCTTATTTTATTTCATCGTATTAAAAAGCTATTGAAAATCGATTGACATGTGCAAATCAACTATATGGTTAAGAATATCAGTTTAATTTCATTTCTTTTCTCTTAGGCTTTTCCCTCTTTTGTATCAATTTTTTTTGACGAACATGATCTAAAATTTTACGATTTCTTCTTTATAGACAGACAAAGCTTCAATACTTCAAGCAGGAATTGATTATGTGAAACAGCTTAAAGAACGTGTTGAGAAGCTAGAGAAACAAGAAGAAAATGTTGGGGTCACATCAATGACCCTCAACAAATCACAAAATTCATGTGAATTAATGAAGACACAAATTCTAGCGAAACAAGTTGTGATGATGATTGTAACCATAGTATCCCTTCCAGATATTGAAGCAAGA

Protein sequence

>MS.gene060870.t1

VEAGSQCIDHIMAERKRRQELSEKFIALSATIPGLSKTDKASILQAGIDYVKQLKERVEKLEKQEENVGVTSMTLNKSQNSCELMKTQILAKQVVMMIVTIVSLPDIEAR