Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76261.t1 | XP_013470234.1 | 97.2 | 598 | 13 | 2 | 1 | 597 | 1 | 595 | 0.00E+00 | 1116.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76261.t1 | F4I9E1 | 23.1 | 568 | 393 | 14 | 25 | 579 | 43 | 579 | 8.9e-25 | 116.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76261.t1 | A0A072VR59 | 97.2 | 598 | 13 | 2 | 1 | 597 | 1 | 595 | 0.0e+00 | 1116.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene060851 | MS.gene76261 | 0.807606 | 4.66E-50 | -1.69E-46 |
| MS.gene060852 | MS.gene76261 | 0.806138 | 9.51E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76261.t1 | MTR_1g111550 | 97.157 | 598 | 13 | 2 | 1 | 597 | 1 | 595 | 0.0 | 1166 |
| MS.gene76261.t1 | MTR_1g111510 | 75.258 | 582 | 138 | 3 | 11 | 591 | 12 | 588 | 0.0 | 878 |
| MS.gene76261.t1 | MTR_1g111540 | 73.459 | 584 | 143 | 3 | 11 | 593 | 12 | 584 | 0.0 | 863 |
| MS.gene76261.t1 | MTR_1g111530 | 72.414 | 580 | 148 | 3 | 15 | 593 | 12 | 580 | 0.0 | 847 |
| MS.gene76261.t1 | MTR_7g102880 | 63.946 | 588 | 197 | 6 | 14 | 591 | 18 | 600 | 0.0 | 728 |
| MS.gene76261.t1 | MTR_1g050550 | 58.966 | 580 | 228 | 3 | 13 | 585 | 12 | 588 | 0.0 | 680 |
| MS.gene76261.t1 | MTR_1g059080 | 56.326 | 577 | 239 | 3 | 13 | 585 | 12 | 579 | 0.0 | 652 |
| MS.gene76261.t1 | MTR_2g100400 | 34.159 | 565 | 321 | 7 | 22 | 566 | 4 | 537 | 7.75e-103 | 322 |
| MS.gene76261.t1 | MTR_7g029015 | 34.872 | 585 | 334 | 11 | 11 | 557 | 1 | 576 | 1.35e-100 | 317 |
| MS.gene76261.t1 | MTR_5g090570 | 32.849 | 551 | 334 | 5 | 25 | 567 | 11 | 533 | 5.94e-97 | 306 |
| MS.gene76261.t1 | MTR_3g099150 | 34.650 | 557 | 324 | 12 | 25 | 558 | 15 | 554 | 1.83e-92 | 295 |
| MS.gene76261.t1 | MTR_4g073690 | 35.609 | 542 | 319 | 10 | 25 | 558 | 15 | 534 | 3.19e-87 | 281 |
| MS.gene76261.t1 | MTR_5g022380 | 32.000 | 550 | 335 | 7 | 25 | 569 | 13 | 528 | 1.17e-80 | 264 |
| MS.gene76261.t1 | MTR_2g450710 | 31.159 | 552 | 350 | 9 | 26 | 558 | 13 | 553 | 6.94e-75 | 249 |
| MS.gene76261.t1 | MTR_4g116210 | 30.179 | 560 | 352 | 11 | 26 | 558 | 12 | 559 | 1.17e-74 | 249 |
| MS.gene76261.t1 | MTR_5g022380 | 31.858 | 452 | 269 | 7 | 123 | 569 | 1 | 418 | 1.02e-59 | 205 |
| MS.gene76261.t1 | MTR_4g073690 | 35.128 | 390 | 232 | 8 | 25 | 406 | 15 | 391 | 4.93e-58 | 199 |
| MS.gene76261.t1 | MTR_5g095240 | 83.099 | 71 | 12 | 0 | 494 | 564 | 2 | 72 | 2.61e-34 | 125 |
| MS.gene76261.t1 | MTR_2g104250 | 33.188 | 229 | 110 | 5 | 330 | 558 | 104 | 289 | 6.36e-32 | 126 |
| MS.gene76261.t1 | MTR_3g466040 | 26.838 | 544 | 357 | 13 | 22 | 558 | 4 | 513 | 8.27e-28 | 117 |
| MS.gene76261.t1 | MTR_7g083660 | 25.132 | 569 | 387 | 16 | 25 | 569 | 7 | 560 | 9.66e-28 | 118 |
| MS.gene76261.t1 | MTR_3g466110 | 26.419 | 511 | 336 | 12 | 23 | 527 | 5 | 481 | 4.01e-26 | 112 |
| MS.gene76261.t1 | MTR_5g026350 | 25.217 | 575 | 381 | 15 | 25 | 566 | 7 | 565 | 2.73e-23 | 104 |
| MS.gene76261.t1 | MTR_8g071920 | 23.232 | 594 | 410 | 14 | 11 | 572 | 34 | 613 | 1.54e-20 | 96.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76261.t1 | AT2G39210 | 68.165 | 556 | 175 | 2 | 15 | 568 | 11 | 566 | 0.0 | 777 |
| MS.gene76261.t1 | AT2G28120 | 60.276 | 579 | 222 | 4 | 12 | 587 | 4 | 577 | 0.0 | 692 |
| MS.gene76261.t1 | AT1G74780 | 36.713 | 572 | 301 | 9 | 19 | 568 | 1 | 533 | 8.54e-110 | 340 |
| MS.gene76261.t1 | AT1G18940 | 34.477 | 554 | 307 | 8 | 20 | 558 | 4 | 516 | 8.79e-102 | 318 |
| MS.gene76261.t1 | AT5G14120 | 33.901 | 587 | 347 | 9 | 12 | 567 | 3 | 579 | 5.36e-101 | 318 |
| MS.gene76261.t1 | AT3G01930 | 32.598 | 589 | 353 | 8 | 14 | 567 | 5 | 584 | 1.09e-97 | 310 |
| MS.gene76261.t1 | AT2G34355 | 34.875 | 562 | 308 | 10 | 19 | 564 | 1 | 520 | 6.27e-97 | 306 |
| MS.gene76261.t1 | AT5G50520 | 34.552 | 547 | 320 | 9 | 21 | 557 | 12 | 530 | 1.30e-96 | 306 |
| MS.gene76261.t1 | AT5G50630 | 34.552 | 547 | 320 | 9 | 21 | 557 | 12 | 530 | 1.30e-96 | 306 |
| MS.gene76261.t1 | AT2G34350 | 33.932 | 557 | 310 | 7 | 25 | 564 | 7 | 522 | 7.85e-96 | 303 |
| MS.gene76261.t1 | AT2G34350 | 33.932 | 557 | 310 | 7 | 25 | 564 | 7 | 522 | 7.85e-96 | 303 |
| MS.gene76261.t1 | AT4G34950 | 33.979 | 568 | 341 | 7 | 25 | 576 | 16 | 565 | 2.52e-95 | 303 |
| MS.gene76261.t1 | AT2G16660 | 35.754 | 537 | 320 | 6 | 25 | 557 | 14 | 529 | 3.57e-91 | 291 |
| MS.gene76261.t1 | AT3G01930 | 31.250 | 480 | 286 | 8 | 123 | 567 | 1 | 471 | 3.00e-69 | 232 |
| MS.gene76261.t1 | AT1G80530 | 28.881 | 554 | 350 | 11 | 26 | 558 | 14 | 544 | 9.04e-67 | 228 |
| MS.gene76261.t1 | AT3G01930 | 32.037 | 437 | 256 | 6 | 14 | 415 | 5 | 435 | 8.90e-64 | 216 |
| MS.gene76261.t1 | AT2G16660 | 35.567 | 388 | 234 | 5 | 25 | 408 | 14 | 389 | 1.96e-59 | 203 |
| MS.gene76261.t1 | AT2G34355 | 33.333 | 411 | 224 | 8 | 162 | 564 | 2 | 370 | 2.32e-59 | 202 |
| MS.gene76261.t1 | AT3G01630 | 24.101 | 556 | 366 | 12 | 25 | 558 | 41 | 562 | 3.02e-28 | 119 |
| MS.gene76261.t1 | AT3G01630 | 24.101 | 556 | 366 | 12 | 25 | 558 | 23 | 544 | 3.91e-28 | 119 |
| MS.gene76261.t1 | AT1G31470 | 22.632 | 570 | 393 | 13 | 25 | 579 | 43 | 579 | 1.14e-24 | 108 |
| MS.gene76261.t1 | AT4G19450 | 25.458 | 546 | 351 | 15 | 25 | 533 | 7 | 533 | 1.59e-24 | 108 |
| MS.gene76261.t1 | AT5G45275 | 24.180 | 579 | 384 | 17 | 25 | 570 | 7 | 563 | 5.72e-23 | 103 |
| MS.gene76261.t1 | AT2G30300 | 26.391 | 557 | 319 | 18 | 26 | 558 | 8 | 497 | 3.36e-21 | 97.8 |
| MS.gene76261.t1 | AT4G19450 | 26.173 | 405 | 267 | 9 | 25 | 401 | 7 | 407 | 2.10e-20 | 94.4 |
Find 100 sgRNAs with CRISPR-Local
Find 138 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTCCTCTCTTGCCGTCATTT+TGG | 0.200061 | 1.1:-78731077 | None:intergenic |
| TTGTTTCATTAGTGAGTATT+TGG | 0.206900 | 1.1:+78730485 | MS.gene76261:CDS |
| AAAAGGAGTACAAAGAAAAT+TGG | 0.243039 | 1.1:+78730858 | MS.gene76261:CDS |
| ATTGATAATTTAGGTCAAAT+TGG | 0.249106 | 1.1:+78730424 | MS.gene76261:CDS |
| CCCAAACAACTCCGAAATTA+TGG | 0.250119 | 1.1:-78730713 | None:intergenic |
| TTAACAGCAATTGATAATTT+AGG | 0.275096 | 1.1:+78730415 | MS.gene76261:CDS |
| AACACAACACCCCGAGTTTC+CGG | 0.275488 | 1.1:-78729779 | None:intergenic |
| ATCACTGCAGCTACTTTGTT+TGG | 0.283099 | 1.1:+78730934 | MS.gene76261:CDS |
| ATAAGCAAAATCAAAGCTTT+TGG | 0.288180 | 1.1:-78729878 | None:intergenic |
| AAGAGGCAATTGATTGAAAA+AGG | 0.294262 | 1.1:+78730841 | MS.gene76261:CDS |
| GCCATAATTTCGGAGTTGTT+TGG | 0.295709 | 1.1:+78730712 | MS.gene76261:CDS |
| GAAACTCGGGGTGTTGTGTT+GGG | 0.317245 | 1.1:+78729782 | MS.gene76261:CDS |
| CCATAATTTCGGAGTTGTTT+GGG | 0.318152 | 1.1:+78730713 | MS.gene76261:CDS |
| TTTCTAATCATGTCAGCTTC+AGG | 0.321020 | 1.1:+78729428 | MS.gene76261:CDS |
| CCTTATGTTGTTCTTGCAAT+TGG | 0.327850 | 1.1:+78729596 | MS.gene76261:CDS |
| AGACACATTTGCCAAACTTT+TGG | 0.333591 | 1.1:-78729683 | None:intergenic |
| ATGTGTCTTTACATTTGTAT+AGG | 0.337463 | 1.1:+78729698 | MS.gene76261:CDS |
| AAAGGTTATGTTGGTCTTAG+TGG | 0.349558 | 1.1:+78729812 | MS.gene76261:CDS |
| ATGTTATTGCTATTCTTTGC+TGG | 0.355250 | 1.1:+78730370 | MS.gene76261:CDS |
| GTTAAGAGTTGTTTGGTCAT+AGG | 0.356138 | 1.1:-78729501 | None:intergenic |
| AAATACCAAAACCAAAAGTT+TGG | 0.367844 | 1.1:+78729672 | MS.gene76261:CDS |
| ACACAACACCCCGAGTTTCC+GGG | 0.369260 | 1.1:-78729778 | None:intergenic |
| GTAAAATCTTCACCTTGTTC+AGG | 0.370366 | 1.1:-78730319 | None:intergenic |
| CTGTGATAACTTGGATTATG+AGG | 0.371769 | 1.1:-78729379 | None:intergenic |
| TATATTTCACTTGGTCTAGC+TGG | 0.381529 | 1.1:+78730004 | MS.gene76261:CDS |
| ATAGCCTTTGATGTGCAAAA+TGG | 0.396133 | 1.1:+78730628 | MS.gene76261:CDS |
| GGAAACTCGGGGTGTTGTGT+TGG | 0.398139 | 1.1:+78729781 | MS.gene76261:CDS |
| TTTCTTAATGTTAGGGTCGC+TGG | 0.402287 | 1.1:+78730796 | MS.gene76261:CDS |
| TATTCAACTTTGATGAACTT+TGG | 0.405251 | 1.1:+78730745 | MS.gene76261:CDS |
| TCAGGAGCCACCTACATGTT+TGG | 0.407429 | 1.1:+78729446 | MS.gene76261:CDS |
| ATAACATATCTATGCTGAAA+AGG | 0.416968 | 1.1:-78730354 | None:intergenic |
| CTTAGTTTCTTCAAAGACTT+AGG | 0.418305 | 1.1:+78729527 | MS.gene76261:CDS |
| TTTAAACAGAGTGAGTATAT+TGG | 0.420191 | 1.1:+78730067 | MS.gene76261:CDS |
| AGTTCGTTGTTCTGTTTAAC+CGG | 0.420863 | 1.1:-78729959 | None:intergenic |
| GGTGGGGTAGCTAGTCCAAT+TGG | 0.428284 | 1.1:+78730766 | MS.gene76261:CDS |
| ACCATCGTCCTGTGATAACT+TGG | 0.432297 | 1.1:-78729388 | None:intergenic |
| AACACAAGTAACAAGTGAAC+CGG | 0.433064 | 1.1:-78729747 | None:intergenic |
| TAAGGAGGTTAAGAGTTGTT+TGG | 0.437311 | 1.1:-78729508 | None:intergenic |
| TTAAGAAAATATAATCCAAT+TGG | 0.438575 | 1.1:-78730781 | None:intergenic |
| GGACAGGAAGCAAAAGCTAC+AGG | 0.443209 | 1.1:+78731096 | MS.gene76261:CDS |
| AAAGGAGTACAAAGAAAATT+GGG | 0.445150 | 1.1:+78730859 | MS.gene76261:CDS |
| CTAAGTCTTTGAAGAAACTA+AGG | 0.454900 | 1.1:-78729526 | None:intergenic |
| GGTCAAATTGGAACCTCACT+TGG | 0.457053 | 1.1:+78730436 | MS.gene76261:CDS |
| CAACTTTGATGAACTTTGGT+GGG | 0.470861 | 1.1:+78730749 | MS.gene76261:CDS |
| TAACATATCTATGCTGAAAA+GGG | 0.471235 | 1.1:-78730353 | None:intergenic |
| TTGTTTGAGATAACCTCAAC+GGG | 0.472230 | 1.1:-78729352 | None:intergenic |
| TTTGCTGGCACATGTGGTGT+TGG | 0.472238 | 1.1:+78730385 | MS.gene76261:CDS |
| AAAAGAAAGGAAATTGCTGC+TGG | 0.480135 | 1.1:-78729911 | None:intergenic |
| TCAGAGCAGGTTGAAGTTGA+AGG | 0.480550 | 1.1:+78731030 | MS.gene76261:CDS |
| AAACTCGGGGTGTTGTGTTG+GGG | 0.490414 | 1.1:+78729783 | MS.gene76261:CDS |
| CTATTCTTTGCTGGCACATG+TGG | 0.497313 | 1.1:+78730379 | MS.gene76261:CDS |
| CACTAAAATAAGTGAAATAA+CGG | 0.498939 | 1.1:-78730959 | None:intergenic |
| GCTGGCACATGTGGTGTTGG+TGG | 0.499413 | 1.1:+78730388 | MS.gene76261:CDS |
| GACACCAAAATGGCGGTTGA+AGG | 0.501902 | 1.1:+78729323 | None:intergenic |
| TATATGACAAAGAAGCTAAG+AGG | 0.509800 | 1.1:+78730824 | MS.gene76261:CDS |
| AGTTGTTTGGTCATAGGCTA+AGG | 0.514651 | 1.1:-78729495 | None:intergenic |
| AACCATTCGATACATGAAAC+CGG | 0.515497 | 1.1:+78729940 | MS.gene76261:CDS |
| CCAATTGCAAGAACAACATA+AGG | 0.516336 | 1.1:-78729596 | None:intergenic |
| AACCGGTTTCATGTATCGAA+TGG | 0.520822 | 1.1:-78729942 | None:intergenic |
| AGTACAAAGAAAATTGGGTC+AGG | 0.524550 | 1.1:+78730864 | MS.gene76261:CDS |
| GTTAAAATAGTAACTGATCA+AGG | 0.530498 | 1.1:+78730199 | MS.gene76261:CDS |
| GTTAAACAGAACAACGAACT+TGG | 0.531720 | 1.1:+78729962 | MS.gene76261:CDS |
| GAAATTATGGCGAAAACCAA+TGG | 0.538856 | 1.1:-78730700 | None:intergenic |
| TCAACTTTGATGAACTTTGG+TGG | 0.540207 | 1.1:+78730748 | MS.gene76261:CDS |
| TACATGTTTGGTCTTTACTC+CGG | 0.541203 | 1.1:+78729458 | MS.gene76261:CDS |
| TGATTACTGAAGCAAAATAG+AGG | 0.545938 | 1.1:-78730651 | None:intergenic |
| AAAGACTTAGGTGGCAACCT+TGG | 0.554717 | 1.1:+78729539 | MS.gene76261:CDS |
| AAATGACGGCAAGAGAGGAC+AGG | 0.559480 | 1.1:+78731080 | MS.gene76261:CDS |
| GTGAGTATTTGGAATTACCT+AGG | 0.563575 | 1.1:+78730496 | MS.gene76261:CDS |
| TATCACAGGACGATGGTTCG+TGG | 0.571165 | 1.1:+78729394 | MS.gene76261:CDS |
| CTCATAATCCAAGTTATCAC+AGG | 0.573175 | 1.1:+78729380 | MS.gene76261:CDS |
| CAAAGACAACGGCAAGAGGT+AGG | 0.574047 | 1.1:-78730120 | None:intergenic |
| GTCCAAAATGACGGCAAGAG+AGG | 0.575323 | 1.1:+78731075 | MS.gene76261:CDS |
| CAAGAGGTACCGATCAGAGC+AGG | 0.579521 | 1.1:+78731017 | MS.gene76261:CDS |
| AGGAGCTACGGCTGAGATGA+CGG | 0.582623 | 1.1:+78731050 | MS.gene76261:CDS |
| AGTTTCTTCAAAGACTTAGG+TGG | 0.582691 | 1.1:+78729530 | MS.gene76261:CDS |
| AACTTTGATGAACTTTGGTG+GGG | 0.586311 | 1.1:+78730750 | MS.gene76261:CDS |
| AAATCTTCACCTTGTTCAGG+TGG | 0.591220 | 1.1:-78730316 | None:intergenic |
| AAATTGTGATACTAATGCAA+TGG | 0.591899 | 1.1:+78730243 | MS.gene76261:CDS |
| CAACTTCAACCTGCTCTGAT+CGG | 0.592162 | 1.1:-78731026 | None:intergenic |
| ATGACGGTGGTCCAAAATGA+CGG | 0.592384 | 1.1:+78731066 | MS.gene76261:CDS |
| GGTTGAAGTTGAAGGAGCTA+CGG | 0.593890 | 1.1:+78731038 | MS.gene76261:CDS |
| AATGTGAACATGAGTGGTCG+TGG | 0.597649 | 1.1:-78730571 | None:intergenic |
| GGTCAGGAATTGAATTGTGT+AGG | 0.604873 | 1.1:+78730880 | MS.gene76261:CDS |
| TATCAATAAGTGACCGACAC+AGG | 0.607344 | 1.1:-78730608 | None:intergenic |
| GACAGGAAGCAAAAGCTACA+GGG | 0.610641 | 1.1:+78731097 | MS.gene76261:CDS |
| TTTGTTTGAGATAACCTCAA+CGG | 0.614309 | 1.1:-78729353 | None:intergenic |
| TTGAAGGTGTAAGCCCGTTG+AGG | 0.620655 | 1.1:+78729339 | MS.gene76261:CDS |
| AGTCTTTGAAGAAACTAAGG+AGG | 0.622224 | 1.1:-78729523 | None:intergenic |
| ATAATCAATGTGAACATGAG+TGG | 0.627737 | 1.1:-78730577 | None:intergenic |
| AAAGAAAGGAAATTGCTGCT+GGG | 0.629241 | 1.1:-78729910 | None:intergenic |
| TCAACAAAGACAACGGCAAG+AGG | 0.636863 | 1.1:-78730124 | None:intergenic |
| GGAGTAAAGACCAAACATGT+AGG | 0.637378 | 1.1:-78729456 | None:intergenic |
| TTTCTGTTCAACAAAGACAA+CGG | 0.650362 | 1.1:-78730131 | None:intergenic |
| ATAAAGGTGATATATACAAG+AGG | 0.658630 | 1.1:+78731001 | MS.gene76261:CDS |
| GTAAAGACCAAACATGTAGG+TGG | 0.688543 | 1.1:-78729453 | None:intergenic |
| TCCAAGTTATCACAGGACGA+TGG | 0.698322 | 1.1:+78729387 | MS.gene76261:CDS |
| ATTGCAAGAACAACATAAGG+CGG | 0.705972 | 1.1:-78729593 | None:intergenic |
| AGCTACGGCTGAGATGACGG+TGG | 0.773314 | 1.1:+78731053 | MS.gene76261:CDS |
| TTAAGCCAGAGAAAACACCA+AGG | 0.797705 | 1.1:-78729556 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTATATTTTCTTAATGTTA+GGG | + | chr1.1:78730789-78730808 | MS.gene76261:CDS | 10.0% |
| !! | TTAAGAAAATATAATCCAAT+TGG | - | chr1.1:78730784-78730803 | None:intergenic | 15.0% |
| !!! | AGAACAATTAAGTTTTATAA+AGG | + | chr1.1:78730985-78731004 | MS.gene76261:CDS | 15.0% |
| !!! | GATTATATTTTCTTAATGTT+AGG | + | chr1.1:78730788-78730807 | MS.gene76261:CDS | 15.0% |
| !! | CACTAAAATAAGTGAAATAA+CGG | - | chr1.1:78730962-78730981 | None:intergenic | 20.0% |
| !!! | AAGTTTTTGTATATTTCACT+TGG | + | chr1.1:78729995-78730014 | MS.gene76261:CDS | 20.0% |
| !!! | ATTGATAATTTAGGTCAAAT+TGG | + | chr1.1:78730424-78730443 | MS.gene76261:CDS | 20.0% |
| !!! | TTAACAGCAATTGATAATTT+AGG | + | chr1.1:78730415-78730434 | MS.gene76261:CDS | 20.0% |
| !!! | TTTTGGTTTTGGTATTTTTT+TGG | - | chr1.1:78729669-78729688 | None:intergenic | 20.0% |
| ! | AAATACCAAAACCAAAAGTT+TGG | + | chr1.1:78729672-78729691 | MS.gene76261:CDS | 25.0% |
| ! | AAATTGTGATACTAATGCAA+TGG | + | chr1.1:78730243-78730262 | MS.gene76261:CDS | 25.0% |
| ! | AATGGTTCGAATAAAAAGAA+AGG | - | chr1.1:78729927-78729946 | None:intergenic | 25.0% |
| ! | ATAAAGGTGATATATACAAG+AGG | + | chr1.1:78731001-78731020 | MS.gene76261:CDS | 25.0% |
| ! | ATAACATATCTATGCTGAAA+AGG | - | chr1.1:78730357-78730376 | None:intergenic | 25.0% |
| ! | ATGTGTCTTTACATTTGTAT+AGG | + | chr1.1:78729698-78729717 | MS.gene76261:CDS | 25.0% |
| ! | GTTAAAATAGTAACTGATCA+AGG | + | chr1.1:78730199-78730218 | MS.gene76261:CDS | 25.0% |
| ! | TAACATATCTATGCTGAAAA+GGG | - | chr1.1:78730356-78730375 | None:intergenic | 25.0% |
| ! | TACTTGTGTTAAAAATTTCC+CGG | + | chr1.1:78729760-78729779 | MS.gene76261:CDS | 25.0% |
| ! | TATTCAACTTTGATGAACTT+TGG | + | chr1.1:78730745-78730764 | MS.gene76261:CDS | 25.0% |
| ! | TTGAAGAAAAAGAAACTAGA+TGG | + | chr1.1:78730275-78730294 | MS.gene76261:CDS | 25.0% |
| ! | TTGTTTCATTAGTGAGTATT+TGG | + | chr1.1:78730485-78730504 | MS.gene76261:CDS | 25.0% |
| ! | TTTAAACAGAGTGAGTATAT+TGG | + | chr1.1:78730067-78730086 | MS.gene76261:CDS | 25.0% |
| !! | AAAAGGAGTACAAAGAAAAT+TGG | + | chr1.1:78730858-78730877 | MS.gene76261:CDS | 25.0% |
| !! | AAAGGAGTACAAAGAAAATT+GGG | + | chr1.1:78730859-78730878 | MS.gene76261:CDS | 25.0% |
| !! | ATAAGCAAAATCAAAGCTTT+TGG | - | chr1.1:78729881-78729900 | None:intergenic | 25.0% |
| !! | TATTTTGCTTCAGTAATCAT+TGG | + | chr1.1:78730655-78730674 | MS.gene76261:CDS | 25.0% |
| !!! | ATTATGTTTTTATCCTGTGT+CGG | + | chr1.1:78730595-78730614 | MS.gene76261:CDS | 25.0% |
| !!! | CGTTATTTCACTTATTTTAG+TGG | + | chr1.1:78730960-78730979 | MS.gene76261:CDS | 25.0% |
| !!! | GGTTCTCTTCTTAATTTTTT+TGG | + | chr1.1:78729617-78729636 | MS.gene76261:CDS | 25.0% |
| !!! | GTAATCATTGGATTTTGTTT+TGG | + | chr1.1:78730667-78730686 | MS.gene76261:CDS | 25.0% |
| !!! | GTTACTATTTTAACCGAAAA+TGG | - | chr1.1:78730193-78730212 | None:intergenic | 25.0% |
| !!! | TTTTTGGTTACTTCATGATA+TGG | + | chr1.1:78729633-78729652 | MS.gene76261:CDS | 25.0% |
| AAGAAAAAGAAACTAGATGG+TGG | + | chr1.1:78730278-78730297 | MS.gene76261:CDS | 30.0% | |
| AAGAGGCAATTGATTGAAAA+AGG | + | chr1.1:78730841-78730860 | MS.gene76261:CDS | 30.0% | |
| ATAATCAATGTGAACATGAG+TGG | - | chr1.1:78730580-78730599 | None:intergenic | 30.0% | |
| CTTAGTTTCTTCAAAGACTT+AGG | + | chr1.1:78729527-78729546 | MS.gene76261:CDS | 30.0% | |
| TATATGACAAAGAAGCTAAG+AGG | + | chr1.1:78730824-78730843 | MS.gene76261:CDS | 30.0% | |
| TGATTACTGAAGCAAAATAG+AGG | - | chr1.1:78730654-78730673 | None:intergenic | 30.0% | |
| TTAAAAATTTCCCGGAAACT+CGG | + | chr1.1:78729768-78729787 | MS.gene76261:CDS | 30.0% | |
| TTTCTGTTCAACAAAGACAA+CGG | - | chr1.1:78730134-78730153 | None:intergenic | 30.0% | |
| ! | ATGTTATTGCTATTCTTTGC+TGG | + | chr1.1:78730370-78730389 | MS.gene76261:CDS | 30.0% |
| ! | CTAAGTCTTTGAAGAAACTA+AGG | - | chr1.1:78729529-78729548 | None:intergenic | 30.0% |
| ! | TTTGTTTGAGATAACCTCAA+CGG | - | chr1.1:78729356-78729375 | None:intergenic | 30.0% |
| !! | AATGTGCTTATGCTTGTTTT+TGG | - | chr1.1:78730466-78730485 | None:intergenic | 30.0% |
| !! | ATAGGCTAAGGATGTTTTTA+TGG | - | chr1.1:78729486-78729505 | None:intergenic | 30.0% |
| !! | ATGTGCTTATGCTTGTTTTT+GGG | - | chr1.1:78730465-78730484 | None:intergenic | 30.0% |
| !! | CTTTGATTTTGCTTATTGCT+TGG | + | chr1.1:78729885-78729904 | MS.gene76261:CDS | 30.0% |
| !! | GGGATTTTAAAAGGTTATGT+TGG | + | chr1.1:78729803-78729822 | MS.gene76261:CDS | 30.0% |
| !! | TAAGGATGTTTTTATGGTAC+CGG | - | chr1.1:78729480-78729499 | None:intergenic | 30.0% |
| !! | TGCATTTGTTGATCCATTTT+CGG | + | chr1.1:78730177-78730196 | MS.gene76261:CDS | 30.0% |
| !!! | ATTGGTTTTCGCCATAATTT+CGG | + | chr1.1:78730702-78730721 | MS.gene76261:CDS | 30.0% |
| !!! | ATTTGCCAAACTTTTGGTTT+TGG | - | chr1.1:78729680-78729699 | None:intergenic | 30.0% |
| AAAAGAAAGGAAATTGCTGC+TGG | - | chr1.1:78729914-78729933 | None:intergenic | 35.0% | |
| AAAGAAAGGAAATTGCTGCT+GGG | - | chr1.1:78729913-78729932 | None:intergenic | 35.0% | |
| AACACAAGTAACAAGTGAAC+CGG | - | chr1.1:78729750-78729769 | None:intergenic | 35.0% | |
| AACCAGAAAAAACTCTTCCT+AGG | - | chr1.1:78730516-78730535 | None:intergenic | 35.0% | |
| AACCATTCGATACATGAAAC+CGG | + | chr1.1:78729940-78729959 | MS.gene76261:CDS | 35.0% | |
| AACTTTGATGAACTTTGGTG+GGG | + | chr1.1:78730750-78730769 | MS.gene76261:CDS | 35.0% | |
| AGTACAAAGAAAATTGGGTC+AGG | + | chr1.1:78730864-78730883 | MS.gene76261:CDS | 35.0% | |
| AGTTCGTTGTTCTGTTTAAC+CGG | - | chr1.1:78729962-78729981 | None:intergenic | 35.0% | |
| AGTTTCTTCAAAGACTTAGG+TGG | + | chr1.1:78729530-78729549 | MS.gene76261:CDS | 35.0% | |
| ATAGCCTTTGATGTGCAAAA+TGG | + | chr1.1:78730628-78730647 | MS.gene76261:CDS | 35.0% | |
| ATTGCAAGAACAACATAAGG+CGG | - | chr1.1:78729596-78729615 | None:intergenic | 35.0% | |
| CAACTTTGATGAACTTTGGT+GGG | + | chr1.1:78730749-78730768 | MS.gene76261:CDS | 35.0% | |
| CCAATTGCAAGAACAACATA+AGG | - | chr1.1:78729599-78729618 | None:intergenic | 35.0% | |
| CCATAATTTCGGAGTTGTTT+GGG | + | chr1.1:78730713-78730732 | MS.gene76261:CDS | 35.0% | |
| CCTTATGTTGTTCTTGCAAT+TGG | + | chr1.1:78729596-78729615 | MS.gene76261:CDS | 35.0% | |
| CTCATAATCCAAGTTATCAC+AGG | + | chr1.1:78729380-78729399 | MS.gene76261:CDS | 35.0% | |
| CTGTGATAACTTGGATTATG+AGG | - | chr1.1:78729382-78729401 | None:intergenic | 35.0% | |
| GAAATTATGGCGAAAACCAA+TGG | - | chr1.1:78730703-78730722 | None:intergenic | 35.0% | |
| GTAAAATCTTCACCTTGTTC+AGG | - | chr1.1:78730322-78730341 | None:intergenic | 35.0% | |
| GTTAAACAGAACAACGAACT+TGG | + | chr1.1:78729962-78729981 | MS.gene76261:CDS | 35.0% | |
| GTTAAGAGTTGTTTGGTCAT+AGG | - | chr1.1:78729504-78729523 | None:intergenic | 35.0% | |
| TAAAAATTTCCCGGAAACTC+GGG | + | chr1.1:78729769-78729788 | MS.gene76261:CDS | 35.0% | |
| TAAGGAGGTTAAGAGTTGTT+TGG | - | chr1.1:78729511-78729530 | None:intergenic | 35.0% | |
| TATATTTCACTTGGTCTAGC+TGG | + | chr1.1:78730004-78730023 | MS.gene76261:CDS | 35.0% | |
| TCAACTTTGATGAACTTTGG+TGG | + | chr1.1:78730748-78730767 | MS.gene76261:CDS | 35.0% | |
| TTTCTAATCATGTCAGCTTC+AGG | + | chr1.1:78729428-78729447 | MS.gene76261:CDS | 35.0% | |
| ! | AGACACATTTGCCAAACTTT+TGG | - | chr1.1:78729686-78729705 | None:intergenic | 35.0% |
| ! | AGTCTTTGAAGAAACTAAGG+AGG | - | chr1.1:78729526-78729545 | None:intergenic | 35.0% |
| ! | GTGAGTATTTGGAATTACCT+AGG | + | chr1.1:78730496-78730515 | MS.gene76261:CDS | 35.0% |
| ! | GTTGTGTTGGGGATTTTAAA+AGG | + | chr1.1:78729794-78729813 | MS.gene76261:CDS | 35.0% |
| ! | TACATGTTTGGTCTTTACTC+CGG | + | chr1.1:78729458-78729477 | MS.gene76261:CDS | 35.0% |
| ! | TTGTTTGAGATAACCTCAAC+GGG | - | chr1.1:78729355-78729374 | None:intergenic | 35.0% |
| !! | AAAGGTTATGTTGGTCTTAG+TGG | + | chr1.1:78729812-78729831 | MS.gene76261:CDS | 35.0% |
| !!! | ATTTTTAGTCCACCTGAACA+AGG | + | chr1.1:78730307-78730326 | MS.gene76261:CDS | 35.0% |
| !!! | TACCTAGGAAGAGTTTTTTC+TGG | + | chr1.1:78730511-78730530 | MS.gene76261:CDS | 35.0% |
| !!! | TCTCAGTCTTTTTCAAACAC+CGG | + | chr1.1:78729728-78729747 | MS.gene76261:CDS | 35.0% |
| !!! | TGGTCTAGCTGGTTTTTTAA+TGG | + | chr1.1:78730015-78730034 | MS.gene76261:CDS | 35.0% |
| AAAAATTTCCCGGAAACTCG+GGG | + | chr1.1:78729770-78729789 | MS.gene76261:CDS | 40.0% | |
| AAATCTTCACCTTGTTCAGG+TGG | - | chr1.1:78730319-78730338 | None:intergenic | 40.0% | |
| AGTTGTTTGGTCATAGGCTA+AGG | - | chr1.1:78729498-78729517 | None:intergenic | 40.0% | |
| CCCAAACAACTCCGAAATTA+TGG | - | chr1.1:78730716-78730735 | None:intergenic | 40.0% | |
| GCCATAATTTCGGAGTTGTT+TGG | + | chr1.1:78730712-78730731 | MS.gene76261:CDS | 40.0% | |
| GGAGTAAAGACCAAACATGT+AGG | - | chr1.1:78729459-78729478 | None:intergenic | 40.0% | |
| GGTCAGGAATTGAATTGTGT+AGG | + | chr1.1:78730880-78730899 | MS.gene76261:CDS | 40.0% | |
| GTAAAGACCAAACATGTAGG+TGG | - | chr1.1:78729456-78729475 | None:intergenic | 40.0% | |
| TATCAATAAGTGACCGACAC+AGG | - | chr1.1:78730611-78730630 | None:intergenic | 40.0% | |
| TTAAGCCAGAGAAAACACCA+AGG | - | chr1.1:78729559-78729578 | None:intergenic | 40.0% | |
| TTTCTTAATGTTAGGGTCGC+TGG | + | chr1.1:78730796-78730815 | MS.gene76261:CDS | 40.0% | |
| ! | AACCGGTTTCATGTATCGAA+TGG | - | chr1.1:78729945-78729964 | None:intergenic | 40.0% |
| ! | ATCACTGCAGCTACTTTGTT+TGG | + | chr1.1:78730934-78730953 | MS.gene76261:CDS | 40.0% |
| !!! | GATTTTGTTTTGGTGCACAG+TGG | + | chr1.1:78730677-78730696 | MS.gene76261:CDS | 40.0% |
| !!! | TGTTTTTGGGTATCCAAGTG+AGG | - | chr1.1:78730452-78730471 | None:intergenic | 40.0% |
| AAAGACTTAGGTGGCAACCT+TGG | + | chr1.1:78729539-78729558 | MS.gene76261:CDS | 45.0% | |
| AATGTGAACATGAGTGGTCG+TGG | - | chr1.1:78730574-78730593 | None:intergenic | 45.0% | |
| ACCATCGTCCTGTGATAACT+TGG | - | chr1.1:78729391-78729410 | None:intergenic | 45.0% | |
| ATGACGGTGGTCCAAAATGA+CGG | + | chr1.1:78731066-78731085 | MS.gene76261:CDS | 45.0% | |
| CAACTTCAACCTGCTCTGAT+CGG | - | chr1.1:78731029-78731048 | None:intergenic | 45.0% | |
| CTATTCTTTGCTGGCACATG+TGG | + | chr1.1:78730379-78730398 | MS.gene76261:CDS | 45.0% | |
| GACAGGAAGCAAAAGCTACA+GGG | + | chr1.1:78731097-78731116 | MS.gene76261:CDS | 45.0% | |
| GGTCAAATTGGAACCTCACT+TGG | + | chr1.1:78730436-78730455 | MS.gene76261:CDS | 45.0% | |
| GGTTGAAGTTGAAGGAGCTA+CGG | + | chr1.1:78731038-78731057 | MS.gene76261:CDS | 45.0% | |
| TCAACAAAGACAACGGCAAG+AGG | - | chr1.1:78730127-78730146 | None:intergenic | 45.0% | |
| TCCAAGTTATCACAGGACGA+TGG | + | chr1.1:78729387-78729406 | MS.gene76261:CDS | 45.0% | |
| ! | TCAGAGCAGGTTGAAGTTGA+AGG | + | chr1.1:78731030-78731049 | MS.gene76261:CDS | 45.0% |
| !! | GAGGCCATTTTGCACATCAA+AGG | - | chr1.1:78730635-78730654 | None:intergenic | 45.0% |
| AAATGACGGCAAGAGAGGAC+AGG | + | chr1.1:78731080-78731099 | MS.gene76261:CDS | 50.0% | |
| AACACAACACCCCGAGTTTC+CGG | - | chr1.1:78729782-78729801 | None:intergenic | 50.0% | |
| CAAAGACAACGGCAAGAGGT+AGG | - | chr1.1:78730123-78730142 | None:intergenic | 50.0% | |
| GGACAGGAAGCAAAAGCTAC+AGG | + | chr1.1:78731096-78731115 | MS.gene76261:CDS | 50.0% | |
| GTCCAAAATGACGGCAAGAG+AGG | + | chr1.1:78731075-78731094 | MS.gene76261:CDS | 50.0% | |
| TATCACAGGACGATGGTTCG+TGG | + | chr1.1:78729394-78729413 | MS.gene76261:CDS | 50.0% | |
| TCAGGAGCCACCTACATGTT+TGG | + | chr1.1:78729446-78729465 | MS.gene76261:CDS | 50.0% | |
| TTTGCTGGCACATGTGGTGT+TGG | + | chr1.1:78730385-78730404 | MS.gene76261:CDS | 50.0% | |
| ! | GTCCTCTCTTGCCGTCATTT+TGG | - | chr1.1:78731080-78731099 | None:intergenic | 50.0% |
| ! | TTGAAGGTGTAAGCCCGTTG+AGG | + | chr1.1:78729339-78729358 | MS.gene76261:CDS | 50.0% |
| !! | AAACTCGGGGTGTTGTGTTG+GGG | + | chr1.1:78729783-78729802 | MS.gene76261:CDS | 50.0% |
| !! | GAAACTCGGGGTGTTGTGTT+GGG | + | chr1.1:78729782-78729801 | MS.gene76261:CDS | 50.0% |
| !! | TTTTGGTGCACAGTGGCCAT+TGG | + | chr1.1:78730684-78730703 | MS.gene76261:CDS | 50.0% |
| !!! | GGCAACCTTGGTGTTTTCTC+TGG | + | chr1.1:78729551-78729570 | MS.gene76261:CDS | 50.0% |
| ACACAACACCCCGAGTTTCC+GGG | - | chr1.1:78729781-78729800 | None:intergenic | 55.0% | |
| AGGAGCTACGGCTGAGATGA+CGG | + | chr1.1:78731050-78731069 | MS.gene76261:CDS | 55.0% | |
| GGTGGGGTAGCTAGTCCAAT+TGG | + | chr1.1:78730766-78730785 | MS.gene76261:CDS | 55.0% | |
| !! | CAAGAGGTACCGATCAGAGC+AGG | + | chr1.1:78731017-78731036 | MS.gene76261:CDS | 55.0% |
| !! | GGAAACTCGGGGTGTTGTGT+TGG | + | chr1.1:78729781-78729800 | MS.gene76261:CDS | 55.0% |
| ! | AGCTACGGCTGAGATGACGG+TGG | + | chr1.1:78731053-78731072 | MS.gene76261:CDS | 60.0% |
| ! | GCTGGCACATGTGGTGTTGG+TGG | + | chr1.1:78730388-78730407 | MS.gene76261:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 78729332 | 78731125 | 78729332 | ID=MS.gene76261 |
| chr1.1 | mRNA | 78729332 | 78731125 | 78729332 | ID=MS.gene76261.t1;Parent=MS.gene76261 |
| chr1.1 | exon | 78729332 | 78731125 | 78729332 | ID=MS.gene76261.t1.exon1;Parent=MS.gene76261.t1 |
| chr1.1 | CDS | 78729332 | 78731125 | 78729332 | ID=cds.MS.gene76261.t1;Parent=MS.gene76261.t1 |
| Gene Sequence |
| Protein sequence |
