Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76289.t1 | XP_013470195.1 | 99.2 | 397 | 3 | 0 | 1 | 397 | 1 | 397 | 2.50E-176 | 628.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76289.t1 | Q84L31 | 74.8 | 424 | 74 | 5 | 1 | 396 | 1 | 419 | 7.8e-126 | 451.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76289.t1 | A0A072VS14 | 99.2 | 397 | 3 | 0 | 1 | 397 | 1 | 397 | 1.8e-176 | 628.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene76289 | MS.gene83520 | PPI |
| MS.gene90381 | MS.gene76289 | PPI |
| MS.gene99949 | MS.gene76289 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76289.t1 | MTR_1g111090 | 99.244 | 397 | 3 | 0 | 1 | 397 | 1 | 397 | 0.0 | 796 |
| MS.gene76289.t1 | MTR_7g407040 | 65.152 | 396 | 112 | 8 | 1 | 396 | 1 | 370 | 8.69e-162 | 459 |
| MS.gene76289.t1 | MTR_2g105410 | 55.416 | 397 | 145 | 8 | 1 | 396 | 1 | 366 | 2.06e-142 | 410 |
| MS.gene76289.t1 | MTR_7g037380 | 52.941 | 68 | 30 | 1 | 18 | 83 | 72 | 139 | 3.27e-15 | 73.6 |
| MS.gene76289.t1 | MTR_7g006500 | 67.925 | 53 | 15 | 2 | 149 | 201 | 62 | 112 | 5.90e-14 | 68.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76289.t1 | AT3G02540 | 70.093 | 428 | 86 | 8 | 1 | 396 | 1 | 418 | 0.0 | 554 |
| MS.gene76289.t1 | AT3G02540 | 69.930 | 429 | 86 | 8 | 1 | 396 | 1 | 419 | 0.0 | 554 |
| MS.gene76289.t1 | AT5G38470 | 68.421 | 399 | 103 | 9 | 1 | 397 | 1 | 378 | 1.14e-177 | 499 |
| MS.gene76289.t1 | AT1G79650 | 56.281 | 398 | 145 | 9 | 1 | 396 | 1 | 371 | 2.42e-143 | 412 |
| MS.gene76289.t1 | AT1G79650 | 56.030 | 398 | 140 | 9 | 1 | 396 | 1 | 365 | 9.38e-143 | 410 |
| MS.gene76289.t1 | AT1G79650 | 54.087 | 416 | 150 | 10 | 1 | 396 | 1 | 395 | 8.21e-140 | 404 |
| MS.gene76289.t1 | AT1G16190 | 53.401 | 397 | 155 | 5 | 1 | 396 | 1 | 368 | 5.63e-139 | 401 |
| MS.gene76289.t1 | AT5G38470 | 66.265 | 332 | 91 | 8 | 1 | 330 | 1 | 313 | 9.11e-134 | 386 |
| MS.gene76289.t1 | AT1G16190 | 52.547 | 373 | 147 | 5 | 25 | 396 | 2 | 345 | 6.04e-126 | 367 |
| MS.gene76289.t1 | AT1G79650 | 52.261 | 398 | 141 | 10 | 1 | 396 | 1 | 351 | 1.59e-125 | 366 |
| MS.gene76289.t1 | AT3G02540 | 63.430 | 309 | 73 | 6 | 1 | 279 | 1 | 299 | 2.60e-115 | 338 |
| MS.gene76289.t1 | AT5G16090 | 60.526 | 76 | 30 | 0 | 1 | 76 | 1 | 76 | 1.02e-23 | 97.1 |
| MS.gene76289.t1 | AT5G16090 | 50.495 | 101 | 47 | 2 | 292 | 392 | 74 | 171 | 7.90e-23 | 94.7 |
Find 127 sgRNAs with CRISPR-Local
Find 279 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTCCATAGGTTCGTTTATC+AGG | 0.249506 | 1.1:-78468036 | None:intergenic |
| TGCTGGAGCTTCAGCTTGTT+CGG | 0.259679 | 1.1:-78467442 | None:intergenic |
| GCAGCACCAGCACCAATATT+TGG | 0.271370 | 1.1:-78467674 | None:intergenic |
| ACTCATGCATGTGGTCTAAA+AGG | 0.325713 | 1.1:-78468766 | None:intergenic |
| AGGGAAGGTTCTGATGTCTA+TGG | 0.340684 | 1.1:+78467067 | MS.gene76289:intron |
| ATGCTTTAGGAACAACCTAT+TGG | 0.341168 | 1.1:+78468196 | MS.gene76289:intron |
| AGTTCAACAAATCCTAGATA+TGG | 0.341539 | 1.1:+78467135 | MS.gene76289:CDS |
| TGCTGCTGGTGCCGGTTCTC+TGG | 0.344680 | 1.1:+78467691 | MS.gene76289:CDS |
| TTCACAGGTTGTGCACTTGC+AGG | 0.353383 | 1.1:-78467477 | None:intergenic |
| TGCTTTAGGAACAACCTATT+GGG | 0.371188 | 1.1:+78468197 | MS.gene76289:intron |
| AATATTGGTGCTGGTGCTGC+TGG | 0.379034 | 1.1:+78467677 | MS.gene76289:CDS |
| GGAGCTGCAGCTGCAGCCTC+AGG | 0.380645 | 1.1:-78467501 | None:intergenic |
| CTCATCTTATGAGATTGATT+CGG | 0.386341 | 1.1:+78467990 | MS.gene76289:CDS |
| TCATCTTATGAGATTGATTC+GGG | 0.386880 | 1.1:+78467991 | MS.gene76289:CDS |
| TTCAATAGCTTGGCGCTCCT+CGG | 0.390524 | 1.1:-78468261 | None:intergenic |
| TTACAGGGCCTGCCAAATAT+TGG | 0.393136 | 1.1:+78467662 | MS.gene76289:intron |
| GAGATTGATTCGGGATCATC+AGG | 0.398560 | 1.1:+78468000 | MS.gene76289:CDS |
| AAATATTCAACCGCCCTCTC+AGG | 0.399566 | 1.1:-78467217 | None:intergenic |
| TGGGCAGGCTGCATCTAATC+TGG | 0.400887 | 1.1:+78467087 | MS.gene76289:CDS |
| GCTGGAGCTTCAGCTTGTTC+GGG | 0.405755 | 1.1:-78467441 | None:intergenic |
| GGCAAATCCACAAATATTGC+AGG | 0.411244 | 1.1:+78467863 | MS.gene76289:CDS |
| AAGAAAACCTGCAATATTTG+TGG | 0.413342 | 1.1:-78467870 | None:intergenic |
| GTAGCAGTTGCCGAGGATAT+AGG | 0.416272 | 1.1:-78466906 | None:intergenic |
| TGGGAGGAGGAAGCTGGGAT+AGG | 0.427311 | 1.1:+78467155 | MS.gene76289:CDS |
| AGGTCTAGAGGATTAGCATT+AGG | 0.432634 | 1.1:-78467561 | None:intergenic |
| TTAGGTCCACTTGAGGTAAC+AGG | 0.432965 | 1.1:-78467543 | None:intergenic |
| ATAGGAGCAGGAGCTGGAGC+TGG | 0.438364 | 1.1:-78466888 | None:intergenic |
| CAGCAGCCATCTGTCCCAAT+AGG | 0.439096 | 1.1:-78468211 | None:intergenic |
| GGTGCTGGTGCTGCTGGTGC+CGG | 0.439464 | 1.1:+78467683 | MS.gene76289:CDS |
| TAGATATGGGAGGAGGAAGC+TGG | 0.440681 | 1.1:+78467149 | MS.gene76289:CDS |
| CACGGTGCCGCAGTTGCAGC+AGG | 0.444802 | 1.1:-78466726 | None:intergenic |
| GCACCATAGCTCGCAATGCT+TGG | 0.445098 | 1.1:-78467839 | None:intergenic |
| TTTGCCAAGCTCTTGTAGCA+TGG | 0.451224 | 1.1:-78467960 | None:intergenic |
| GCTGCATCTAATCTGGTTGC+CGG | 0.462863 | 1.1:+78467094 | MS.gene76289:CDS |
| CATTGTGATCATGCTTTCAA+AGG | 0.464553 | 1.1:+78466071 | MS.gene76289:CDS |
| AACTTACACGTTCAATAGCT+TGG | 0.465361 | 1.1:-78468271 | None:intergenic |
| CTTATTGCAGCTTGAAGCAA+TGG | 0.466176 | 1.1:+78468673 | MS.gene76289:intron |
| GCAGGCGCTCGGGACACTGC+TGG | 0.466866 | 1.1:-78467459 | None:intergenic |
| TCAATAGCTTGGCGCTCCTC+GGG | 0.468475 | 1.1:-78468260 | None:intergenic |
| CAGCCCATGCTACAAGAGCT+TGG | 0.469143 | 1.1:+78467956 | MS.gene76289:intron |
| AGCTTCCTCCTCCCATATCT+AGG | 0.469763 | 1.1:-78467147 | None:intergenic |
| CGCCCTCTCAGGGTTATTGA+AGG | 0.470824 | 1.1:-78467206 | None:intergenic |
| GAAGGTGCAGCAACAGATGC+AGG | 0.472270 | 1.1:-78466864 | None:intergenic |
| GTTCAACAAATCCTAGATAT+GGG | 0.475757 | 1.1:+78467136 | MS.gene76289:CDS |
| GAACCTATGGAGGGCGGAGA+AGG | 0.477244 | 1.1:+78468046 | MS.gene76289:CDS |
| CCTGCTCCTGTTACCTCAAG+TGG | 0.477887 | 1.1:+78467537 | MS.gene76289:CDS |
| CGAAGTCACGCCACAAGACT+CGG | 0.479179 | 1.1:+78465091 | MS.gene76289:CDS |
| TTGTGCACTTGCAGGCGCTC+GGG | 0.479546 | 1.1:-78467469 | None:intergenic |
| GTTGTGCACTTGCAGGCGCT+CGG | 0.483214 | 1.1:-78467470 | None:intergenic |
| AGTAAGCCCGCGTCTGGTGA+AGG | 0.483949 | 1.1:+78466471 | MS.gene76289:CDS |
| CAGCAAATGCTTATTCATCA+AGG | 0.483953 | 1.1:+78465991 | MS.gene76289:CDS |
| TTGCCAAGCTCTTGTAGCAT+GGG | 0.484703 | 1.1:-78467959 | None:intergenic |
| GGGAGGAGGAAGCTGGGATA+GGG | 0.488129 | 1.1:+78467156 | MS.gene76289:CDS |
| GCAGGAGCTGGAGCTGGGGA+AGG | 0.489970 | 1.1:-78466882 | None:intergenic |
| TGATCGTGCTATAGTATTGG+AGG | 0.491124 | 1.1:+78468700 | MS.gene76289:CDS |
| CACCAGCACCAATATTTGGC+AGG | 0.492935 | 1.1:-78467670 | None:intergenic |
| CCGTAGAAAATCCAGAGAAC+CGG | 0.494675 | 1.1:-78467702 | None:intergenic |
| CACCCTTCTCCGCCCTCCAT+AGG | 0.495258 | 1.1:-78468049 | None:intergenic |
| AGGTTCTGATGTCTATGGGC+AGG | 0.496402 | 1.1:+78467072 | MS.gene76289:CDS |
| TAGGAGCAGGAGCTGGAGCT+GGG | 0.499444 | 1.1:-78466887 | None:intergenic |
| ATAAGCATTTGCTGTGCAGC+AGG | 0.503524 | 1.1:-78465982 | None:intergenic |
| TCGCCTGATAAACGAACCTA+TGG | 0.506239 | 1.1:+78468033 | MS.gene76289:CDS |
| CCACTTGAGGTAACAGGAGC+AGG | 0.508160 | 1.1:-78467537 | None:intergenic |
| TGGCAGAGTAAGCCCGCGTC+TGG | 0.509702 | 1.1:+78466465 | MS.gene76289:intron |
| AGCTCCTGCTCCTATATCCT+CGG | 0.510256 | 1.1:+78466896 | MS.gene76289:CDS |
| TCTGGTTGCCGGTAGCAACT+TGG | 0.522344 | 1.1:+78467105 | MS.gene76289:CDS |
| GGTTGCCGGTAGCAACTTGG+AGG | 0.526533 | 1.1:+78467108 | MS.gene76289:CDS |
| TCCTCTAGACCTCTTTCCCC+AGG | 0.527390 | 1.1:+78467572 | MS.gene76289:CDS |
| CGACTGTTACCTGGGGAAAG+AGG | 0.528080 | 1.1:-78467581 | None:intergenic |
| GAAGGATGGTACCACCTTGG+AGG | 0.528142 | 1.1:+78466023 | MS.gene76289:CDS |
| CAAACTTCTCTCACCTTCGC+TGG | 0.529980 | 1.1:-78466516 | None:intergenic |
| CCTGATAAACGAACCTATGG+AGG | 0.530397 | 1.1:+78468036 | MS.gene76289:CDS |
| TGTTCCCTCCAAGTTGCTAC+CGG | 0.534141 | 1.1:-78467113 | None:intergenic |
| TTATTGCAGCTTGAAGCAAT+GGG | 0.537260 | 1.1:+78468674 | MS.gene76289:intron |
| CATGTGGTCTAAAAGGTAGT+TGG | 0.538667 | 1.1:-78468759 | None:intergenic |
| ATAGACATCTACACCTTGAA+CGG | 0.540608 | 1.1:-78465959 | None:intergenic |
| GTTCCAAGCATTGCGAGCTA+TGG | 0.544462 | 1.1:+78467836 | MS.gene76289:intron |
| GGAGCAGGCTGAGCTGCTTG+TGG | 0.545404 | 1.1:-78467522 | None:intergenic |
| GGGAAGGTTCTGATGTCTAT+GGG | 0.550980 | 1.1:+78467068 | MS.gene76289:intron |
| TAGGAGCAGCACTTGTCTGT+GGG | 0.552599 | 1.1:-78466668 | None:intergenic |
| GCTGCAGCCTCAGGATTCAC+AGG | 0.553492 | 1.1:-78467492 | None:intergenic |
| AGCATTGCGAGCTATGGTGC+AGG | 0.553590 | 1.1:+78467842 | MS.gene76289:CDS |
| CTATTGGGACAGATGGCTGC+TGG | 0.554126 | 1.1:+78468212 | MS.gene76289:CDS |
| AATATTCAACCGCCCTCTCA+GGG | 0.556278 | 1.1:-78467216 | None:intergenic |
| TCAAGCTCCTGCTGCAACTG+CGG | 0.558262 | 1.1:+78466719 | MS.gene76289:CDS |
| GAGGATATAGGAGCAGGAGC+TGG | 0.559984 | 1.1:-78466894 | None:intergenic |
| GTTGCCGAGGATATAGGAGC+AGG | 0.561804 | 1.1:-78466900 | None:intergenic |
| GGCCTGCCAAATATTGGTGC+TGG | 0.565166 | 1.1:+78467668 | MS.gene76289:CDS |
| TTTGAAGGATGGTACCACCT+TGG | 0.566393 | 1.1:+78466020 | MS.gene76289:CDS |
| GTAGGAGCAGCACTTGTCTG+TGG | 0.567111 | 1.1:-78466669 | None:intergenic |
| AGATATGGGAGGAGGAAGCT+GGG | 0.572319 | 1.1:+78467150 | MS.gene76289:CDS |
| GTAAGCCCGCGTCTGGTGAA+GGG | 0.575627 | 1.1:+78466472 | MS.gene76289:CDS |
| TAGGTTCGTTTATCAGGCGA+AGG | 0.578774 | 1.1:-78468030 | None:intergenic |
| GAACAACCTATTGGGACAGA+TGG | 0.579220 | 1.1:+78468205 | MS.gene76289:CDS |
| GTGGTCTAAAAGGTAGTTGG+CGG | 0.579276 | 1.1:-78468756 | None:intergenic |
| TTCAAATGCTCCTCCAGCGA+AGG | 0.580319 | 1.1:+78466503 | MS.gene76289:CDS |
| CAAATCCTAGATATGGGAGG+AGG | 0.580761 | 1.1:+78467142 | MS.gene76289:CDS |
| AACCTATGGAGGGCGGAGAA+GGG | 0.586771 | 1.1:+78468047 | MS.gene76289:CDS |
| AGGAGCAGGAGCTGGAGCTG+GGG | 0.587268 | 1.1:-78466886 | None:intergenic |
| ACCTGGGGAAAGAGGTCTAG+AGG | 0.592015 | 1.1:-78467573 | None:intergenic |
| CTTGAGGTGAAACAGACACT+GGG | 0.598069 | 1.1:-78466701 | None:intergenic |
| AGTAGACCCTTCACCAGACG+CGG | 0.598769 | 1.1:-78466478 | None:intergenic |
| AGCAAATGCTTATTCATCAA+GGG | 0.601247 | 1.1:+78465992 | MS.gene76289:CDS |
| CGAATCAATCTCATAAGATG+AGG | 0.606271 | 1.1:-78467989 | None:intergenic |
| GCTTGAGGTGAAACAGACAC+TGG | 0.613953 | 1.1:-78466702 | None:intergenic |
| TGCCTTCAATAACCCTGAGA+GGG | 0.615258 | 1.1:+78467204 | MS.gene76289:CDS |
| GCAGTTGCAGCAGGAGCTTG+AGG | 0.616444 | 1.1:-78466717 | None:intergenic |
| ACTTCTCTCACCTTCGCTGG+AGG | 0.619890 | 1.1:-78466513 | None:intergenic |
| CTGATAAACGAACCTATGGA+GGG | 0.626493 | 1.1:+78468037 | MS.gene76289:CDS |
| ATTAGCATTAGGTCCACTTG+AGG | 0.629093 | 1.1:-78467550 | None:intergenic |
| TATTTACGTAGCAGTTGCCG+AGG | 0.633237 | 1.1:-78466913 | None:intergenic |
| CTTCAATAACCCTGAGAGGG+CGG | 0.633530 | 1.1:+78467207 | MS.gene76289:CDS |
| TGAGGGAAAACCGAGTCTTG+TGG | 0.634415 | 1.1:-78465101 | None:intergenic |
| GAGGTGAAACAGACACTGGG+GGG | 0.636174 | 1.1:-78466698 | None:intergenic |
| AGGAGCAGCACTTGTCTGTG+GGG | 0.638148 | 1.1:-78466667 | None:intergenic |
| GTTCGTCGAACTCATGCATG+TGG | 0.641221 | 1.1:-78468775 | None:intergenic |
| CTGCCTTCAATAACCCTGAG+AGG | 0.652037 | 1.1:+78467203 | MS.gene76289:CDS |
| ATCAGTAACTGTCACACCCG+AGG | 0.657070 | 1.1:+78468244 | MS.gene76289:CDS |
| TGAGGTGAAACAGACACTGG+GGG | 0.659088 | 1.1:-78466699 | None:intergenic |
| GTAGACCCTTCACCAGACGC+GGG | 0.666940 | 1.1:-78466477 | None:intergenic |
| GGTGTGACAGTTACTGATTG+TGG | 0.672986 | 1.1:-78468239 | None:intergenic |
| GTTGCCGGTAGCAACTTGGA+GGG | 0.675122 | 1.1:+78467109 | MS.gene76289:CDS |
| CAACAAATCCTAGATATGGG+AGG | 0.680457 | 1.1:+78467139 | MS.gene76289:CDS |
| AGGTGAAACAGACACTGGGG+GGG | 0.685526 | 1.1:-78466697 | None:intergenic |
| ATAAACGAACCTATGGAGGG+CGG | 0.697015 | 1.1:+78468040 | MS.gene76289:CDS |
| TGCACAACCTGTGAATCCTG+AGG | 0.701039 | 1.1:+78467485 | MS.gene76289:CDS |
| TTGAGGTGAAACAGACACTG+GGG | 0.743648 | 1.1:-78466700 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTAAATAAAAAATTAACC+AGG | - | chr1.1:78467391-78467410 | None:intergenic | 10.0% |
| !!! | TTATAATTGTTTTTGTATAT+TGG | + | chr1.1:78468105-78468124 | MS.gene76289:intron | 10.0% |
| !!! | TTTTTATTATTTTTGAGTTT+TGG | + | chr1.1:78466218-78466237 | MS.gene76289:intron | 10.0% |
| !! | AAAATACAATAAATAGGTAA+CGG | - | chr1.1:78468399-78468418 | None:intergenic | 15.0% |
| !!! | AAGATTAAATTTTTTGAAAC+AGG | + | chr1.1:78467047-78467066 | MS.gene76289:intron | 15.0% |
| !!! | ACATTATACATTTGTTAATT+AGG | + | chr1.1:78468472-78468491 | MS.gene76289:intron | 15.0% |
| !!! | AGAACTCTTTTTTTAATATA+TGG | + | chr1.1:78466445-78466464 | MS.gene76289:intron | 15.0% |
| !!! | AGATTAAATTTTTTGAAACA+GGG | + | chr1.1:78467048-78467067 | MS.gene76289:intron | 15.0% |
| !!! | ATAATTTTGTACATTGAAAA+TGG | + | chr1.1:78466979-78466998 | MS.gene76289:intron | 15.0% |
| !! | AAATTACAAAATACAGAGAA+AGG | - | chr1.1:78468630-78468649 | None:intergenic | 20.0% |
| !! | ATAGAATATAACAAGCATTA+AGG | - | chr1.1:78466410-78466429 | None:intergenic | 20.0% |
| !! | ATTCTGTTTACTTTAATGTT+TGG | + | chr1.1:78466935-78466954 | MS.gene76289:intron | 20.0% |
| !! | ATTTGATTGTTAGTTAAGTT+AGG | + | chr1.1:78465232-78465251 | MS.gene76289:intron | 20.0% |
| !! | TTGTTATATATTTGAGTCTT+AGG | + | chr1.1:78468555-78468574 | MS.gene76289:intron | 20.0% |
| !! | TTTGATTGTTAGTTAAGTTA+GGG | + | chr1.1:78465233-78465252 | MS.gene76289:intron | 20.0% |
| !!! | AATGCTTGTTATATTCTATT+CGG | + | chr1.1:78466411-78466430 | MS.gene76289:intron | 20.0% |
| !!! | ATTGTTTTTGTATATTGGAA+TGG | + | chr1.1:78468110-78468129 | MS.gene76289:intron | 20.0% |
| !!! | CTGTATTTTGTAATTTATGT+GGG | + | chr1.1:78468634-78468653 | MS.gene76289:intron | 20.0% |
| !!! | GAATTTTGTTGTTAAGTTTT+TGG | + | chr1.1:78465425-78465444 | MS.gene76289:intron | 20.0% |
| !!! | TAAAAAAAAATTCTTTTGGG+TGG | + | chr1.1:78467623-78467642 | MS.gene76289:intron | 20.0% |
| !!! | TATTATTTTTGAGTTTTGGT+TGG | + | chr1.1:78466222-78466241 | MS.gene76289:intron | 20.0% |
| !!! | TCTGAATTATGTTTTTTAGT+GGG | + | chr1.1:78465403-78465422 | MS.gene76289:intron | 20.0% |
| !!! | TCTGTATTTTGTAATTTATG+TGG | + | chr1.1:78468633-78468652 | MS.gene76289:intron | 20.0% |
| !!! | TTACTTTAATGTTTGGAATT+TGG | + | chr1.1:78466942-78466961 | MS.gene76289:intron | 20.0% |
| !!! | TTCTGAATTATGTTTTTTAG+TGG | + | chr1.1:78465402-78465421 | MS.gene76289:intron | 20.0% |
| !!! | TTGAGTTGTTTAGATATATT+TGG | + | chr1.1:78466775-78466794 | MS.gene76289:intron | 20.0% |
| !!! | TTGTTTTTGTATATTGGAAT+GGG | + | chr1.1:78468111-78468130 | MS.gene76289:intron | 20.0% |
| !!! | TTTTTGTTGTTATATTTGCT+GGG | + | chr1.1:78466571-78466590 | MS.gene76289:intron | 20.0% |
| !!! | TTTTTTGTTGTTATATTTGC+TGG | + | chr1.1:78466570-78466589 | MS.gene76289:intron | 20.0% |
| ! | AAAAATATAGAAACCGTTCA+AGG | + | chr1.1:78465946-78465965 | MS.gene76289:CDS | 25.0% |
| ! | AAAATCTCTTCATAAGTACT+AGG | + | chr1.1:78465544-78465563 | MS.gene76289:intron | 25.0% |
| ! | AACAATTATGTATTCTTTGC+AGG | + | chr1.1:78466644-78466663 | MS.gene76289:intron | 25.0% |
| ! | AAGAATCATCAAGAAATAAC+AGG | - | chr1.1:78467323-78467342 | None:intergenic | 25.0% |
| ! | AATACAAGACATAACTACTA+AGG | - | chr1.1:78467900-78467919 | None:intergenic | 25.0% |
| ! | AATCTTCATTTCAATTTGAC+AGG | + | chr1.1:78466841-78466860 | MS.gene76289:intron | 25.0% |
| ! | ATACTTAACTGTATGTTACA+GGG | + | chr1.1:78467647-78467666 | MS.gene76289:intron | 25.0% |
| ! | ATATAGCAGAAAAACAATTG+TGG | - | chr1.1:78465880-78465899 | None:intergenic | 25.0% |
| ! | CAAAACCTATTAAGACTATA+AGG | + | chr1.1:78468341-78468360 | MS.gene76289:intron | 25.0% |
| ! | GAGGTTAAATTCACTAAATA+AGG | - | chr1.1:78465775-78465794 | None:intergenic | 25.0% |
| ! | GCACTGAATTTATTACTTAT+AGG | + | chr1.1:78467767-78467786 | MS.gene76289:intron | 25.0% |
| ! | GTCGAGAAAATACAATAAAT+AGG | - | chr1.1:78468405-78468424 | None:intergenic | 25.0% |
| ! | GTGCATAAATAGTTCAAATT+TGG | + | chr1.1:78468499-78468518 | MS.gene76289:intron | 25.0% |
| ! | TAATGGAACAATCAAGATAA+TGG | - | chr1.1:78467013-78467032 | None:intergenic | 25.0% |
| ! | TATACTTAACTGTATGTTAC+AGG | + | chr1.1:78467646-78467665 | MS.gene76289:intron | 25.0% |
| ! | TATTAAGACTATAAGGACTA+AGG | + | chr1.1:78468348-78468367 | MS.gene76289:intron | 25.0% |
| ! | TTATATATTTGAGTCTTAGG+CGG | + | chr1.1:78468558-78468577 | MS.gene76289:intron | 25.0% |
| ! | TTCCTATATATTACAGTTAC+CGG | + | chr1.1:78467288-78467307 | MS.gene76289:intron | 25.0% |
| !! | CTTTTAGCAACATAGTTTAA+TGG | - | chr1.1:78467030-78467049 | None:intergenic | 25.0% |
| !! | TATTTTGTAATTTATGTGGG+TGG | + | chr1.1:78468637-78468656 | MS.gene76289:intron | 25.0% |
| !! | TTAGTCCTTATAGTCTTAAT+AGG | - | chr1.1:78468349-78468368 | None:intergenic | 25.0% |
| !! | TTCTATATTTTTCTTGACTG+CGG | - | chr1.1:78465938-78465957 | None:intergenic | 25.0% |
| !! | TTTAAGTTATGATTTCGATG+TGG | + | chr1.1:78465346-78465365 | MS.gene76289:intron | 25.0% |
| !!! | GATTCTTACATATCTTGTTT+TGG | + | chr1.1:78467336-78467355 | MS.gene76289:intron | 25.0% |
| !!! | GTTGTTAAGTTTTTGGTTAT+TGG | + | chr1.1:78465432-78465451 | MS.gene76289:intron | 25.0% |
| !!! | GTTGTTGATTTGAATTTTCT+TGG | + | chr1.1:78465299-78465318 | MS.gene76289:intron | 25.0% |
| !!! | TAAATTTTTTGAAACAGGGA+AGG | + | chr1.1:78467052-78467071 | MS.gene76289:intron | 25.0% |
| !!! | TTTTGTTGTTATATTTGCTG+GGG | + | chr1.1:78466572-78466591 | MS.gene76289:intron | 25.0% |
| AAAACTCGATCAACATATGT+AGG | - | chr1.1:78468435-78468454 | None:intergenic | 30.0% | |
| AAACTCGATCAACATATGTA+GGG | - | chr1.1:78468434-78468453 | None:intergenic | 30.0% | |
| AAATAACAGGAATTCCAAAC+CGG | - | chr1.1:78467310-78467329 | None:intergenic | 30.0% | |
| AACATAATCAACTCCAGTTA+TGG | - | chr1.1:78466349-78466368 | None:intergenic | 30.0% | |
| AACCGGTAACTGTAATATAT+AGG | - | chr1.1:78467293-78467312 | None:intergenic | 30.0% | |
| AAGAAAACCTGCAATATTTG+TGG | - | chr1.1:78467873-78467892 | None:intergenic | 30.0% | |
| AAGTCAATAATTAACCGAAC+AGG | - | chr1.1:78465277-78465296 | None:intergenic | 30.0% | |
| ACAAGCATTAAGGAATGAAA+AGG | - | chr1.1:78466400-78466419 | None:intergenic | 30.0% | |
| AGAAAATGACAGATCGATTA+AGG | - | chr1.1:78468318-78468337 | None:intergenic | 30.0% | |
| AGATTCAGAGTTCATTTGAA+TGG | - | chr1.1:78466826-78466845 | None:intergenic | 30.0% | |
| AGCAAATGCTTATTCATCAA+GGG | + | chr1.1:78465992-78466011 | MS.gene76289:CDS | 30.0% | |
| AGTCAATAATTAACCGAACA+GGG | - | chr1.1:78465276-78465295 | None:intergenic | 30.0% | |
| AGTTCAACAAATCCTAGATA+TGG | + | chr1.1:78467135-78467154 | MS.gene76289:CDS | 30.0% | |
| CTCAATTATTGAAATTCTCG+TGG | - | chr1.1:78465646-78465665 | None:intergenic | 30.0% | |
| CTCATCTTATGAGATTGATT+CGG | + | chr1.1:78467990-78468009 | MS.gene76289:CDS | 30.0% | |
| GGTTCAGAATAAAAACAACA+CGG | - | chr1.1:78465859-78465878 | None:intergenic | 30.0% | |
| GTTCAACAAATCCTAGATAT+GGG | + | chr1.1:78467136-78467155 | MS.gene76289:CDS | 30.0% | |
| TATATATTTGAGTCTTAGGC+GGG | + | chr1.1:78468559-78468578 | MS.gene76289:intron | 30.0% | |
| TGTTTGGATCATTACTTTCT+AGG | + | chr1.1:78465494-78465513 | MS.gene76289:intron | 30.0% | |
| TTGCAACAAAAATGAGGAAT+TGG | + | chr1.1:78468733-78468752 | MS.gene76289:CDS | 30.0% | |
| TTTGTCTATTTAGCCATAAC+TGG | + | chr1.1:78466333-78466352 | MS.gene76289:intron | 30.0% | |
| ! | ATATATTACAGTTACCGGTT+TGG | + | chr1.1:78467293-78467312 | MS.gene76289:intron | 30.0% |
| ! | ATTGTTTCTCAGAAATATGG+AGG | + | chr1.1:78468529-78468548 | MS.gene76289:intron | 30.0% |
| ! | CCATATTTCTGAGAAACAAT+AGG | - | chr1.1:78468529-78468548 | None:intergenic | 30.0% |
| ! | CCTATTGTTTCTCAGAAATA+TGG | + | chr1.1:78468526-78468545 | MS.gene76289:intron | 30.0% |
| ! | TCATCTTATGAGATTGATTC+GGG | + | chr1.1:78467991-78468010 | MS.gene76289:CDS | 30.0% |
| ! | TGTTTTCAGTTCCTGTAAAT+GGG | - | chr1.1:78466618-78466637 | None:intergenic | 30.0% |
| ! | TTTTGATCGTGCTATAGTAT+TGG | + | chr1.1:78468697-78468716 | MS.gene76289:CDS | 30.0% |
| !! | AATCAATGTAGTTTTCGAGA+CGG | - | chr1.1:78466121-78466140 | None:intergenic | 30.0% |
| !! | GTTTGAGTCTTGTATGATTT+TGG | + | chr1.1:78467361-78467380 | MS.gene76289:intron | 30.0% |
| !!! | ATTTTTGAGTTTTGGTTGGT+TGG | + | chr1.1:78466226-78466245 | MS.gene76289:intron | 30.0% |
| !!! | GTGTTTTTTTTTTCCCTGTT+CGG | + | chr1.1:78465260-78465279 | MS.gene76289:intron | 30.0% |
| AAAAATGTCCTAGAAACACC+AGG | + | chr1.1:78468595-78468614 | MS.gene76289:intron | 35.0% | |
| AAAATGTCCTAGAAACACCA+GGG | + | chr1.1:78468596-78468615 | MS.gene76289:intron | 35.0% | |
| AAAGCCAAAAAGTAAGCCAA+TGG | - | chr1.1:78468172-78468191 | None:intergenic | 35.0% | |
| AACTTACACGTTCAATAGCT+TGG | - | chr1.1:78468274-78468293 | None:intergenic | 35.0% | |
| ACTTGAAAATACCTGTCCAT+TGG | + | chr1.1:78468153-78468172 | MS.gene76289:intron | 35.0% | |
| AGATCTTAACCACTCCAAAT+TGG | - | chr1.1:78466270-78466289 | None:intergenic | 35.0% | |
| AGTTTATCCCAGCTATCTAA+GGG | + | chr1.1:78466302-78466321 | MS.gene76289:intron | 35.0% | |
| ATAGACATCTACACCTTGAA+CGG | - | chr1.1:78465962-78465981 | None:intergenic | 35.0% | |
| ATATATTTGAGTCTTAGGCG+GGG | + | chr1.1:78468560-78468579 | MS.gene76289:intron | 35.0% | |
| CAGCAAATGCTTATTCATCA+AGG | + | chr1.1:78465991-78466010 | MS.gene76289:CDS | 35.0% | |
| CATGTAAAACAAGTCACTCA+CGG | - | chr1.1:78466747-78466766 | None:intergenic | 35.0% | |
| CATTGTGATCATGCTTTCAA+AGG | + | chr1.1:78466071-78466090 | MS.gene76289:CDS | 35.0% | |
| CGAATCAATCTCATAAGATG+AGG | - | chr1.1:78467992-78468011 | None:intergenic | 35.0% | |
| CTGTGTTTGCGACAAAATAA+CGG | - | chr1.1:78466164-78466183 | None:intergenic | 35.0% | |
| CTTTGCTTGCAACAAAAATG+AGG | + | chr1.1:78468727-78468746 | MS.gene76289:CDS | 35.0% | |
| GAAGGATATTACCCATTTAC+AGG | + | chr1.1:78466604-78466623 | MS.gene76289:intron | 35.0% | |
| GCAATGAAACTTCTGATCAA+AGG | - | chr1.1:78465606-78465625 | None:intergenic | 35.0% | |
| GTGGTATGTAGAATATGATG+TGG | + | chr1.1:78465365-78465384 | MS.gene76289:intron | 35.0% | |
| TGCAGCAATAACAAGAATCA+GGG | - | chr1.1:78467938-78467957 | None:intergenic | 35.0% | |
| TGTCTTGTATTCTCTTCTTG+TGG | + | chr1.1:78467909-78467928 | MS.gene76289:intron | 35.0% | |
| TTATTGCAGCTTGAAGCAAT+GGG | + | chr1.1:78468674-78468693 | MS.gene76289:intron | 35.0% | |
| ! | CTGTTTTCAGTTCCTGTAAA+TGG | - | chr1.1:78466619-78466638 | None:intergenic | 35.0% |
| ! | GTGGTGTTTGATAGTTATAC+TGG | + | chr1.1:78465814-78465833 | MS.gene76289:intron | 35.0% |
| ! | GTTTTCGTCAAGACTCTTAA+AGG | + | chr1.1:78465053-78465072 | MS.gene76289:CDS | 35.0% |
| !! | ATGCTTTAGGAACAACCTAT+TGG | + | chr1.1:78468196-78468215 | MS.gene76289:intron | 35.0% |
| !! | ATGTTGATCGAGTTTTGTCT+AGG | + | chr1.1:78468439-78468458 | MS.gene76289:intron | 35.0% |
| !! | TCATCAAGGGAAAGTTTTGA+AGG | + | chr1.1:78466005-78466024 | MS.gene76289:CDS | 35.0% |
| !! | TGCTTTAGGAACAACCTATT+GGG | + | chr1.1:78468197-78468216 | MS.gene76289:intron | 35.0% |
| !! | TTTGGCTTTCAACATGCTTT+AGG | + | chr1.1:78468183-78468202 | MS.gene76289:intron | 35.0% |
| !!! | AGCTACTTTATTTTCCTCCA+AGG | - | chr1.1:78466040-78466059 | None:intergenic | 35.0% |
| !!! | TACTTTATTTTCCTCCAAGG+TGG | - | chr1.1:78466037-78466056 | None:intergenic | 35.0% |
| ACTCATGCATGTGGTCTAAA+AGG | - | chr1.1:78468769-78468788 | None:intergenic | 40.0% | |
| AGTTCCACATTGTCTCTGTT+TGG | + | chr1.1:78465478-78465497 | MS.gene76289:intron | 40.0% | |
| ATAAAACAGCGACTGTTACC+TGG | - | chr1.1:78467593-78467612 | None:intergenic | 40.0% | |
| ATTAGCATTAGGTCCACTTG+AGG | - | chr1.1:78467553-78467572 | None:intergenic | 40.0% | |
| ATTGTGAAGCAGAAGTAGTC+TGG | - | chr1.1:78466199-78466218 | None:intergenic | 40.0% | |
| CAAAAAGTAAGCCAATGGAC+AGG | - | chr1.1:78468167-78468186 | None:intergenic | 40.0% | |
| CAACAAATCCTAGATATGGG+AGG | + | chr1.1:78467139-78467158 | MS.gene76289:CDS | 40.0% | |
| CAGTTTATCCCAGCTATCTA+AGG | + | chr1.1:78466301-78466320 | MS.gene76289:intron | 40.0% | |
| CATGTGGTCTAAAAGGTAGT+TGG | - | chr1.1:78468762-78468781 | None:intergenic | 40.0% | |
| CTGATAAACGAACCTATGGA+GGG | + | chr1.1:78468037-78468056 | MS.gene76289:CDS | 40.0% | |
| CTGCAGCAATAACAAGAATC+AGG | - | chr1.1:78467939-78467958 | None:intergenic | 40.0% | |
| CTTATTGCAGCTTGAAGCAA+TGG | + | chr1.1:78468673-78468692 | MS.gene76289:intron | 40.0% | |
| GAGTCGAAATCAGAGTTTGA+GGG | - | chr1.1:78465121-78465140 | None:intergenic | 40.0% | |
| GCTTCAAGCTGCAATAAGAA+AGG | - | chr1.1:78468671-78468690 | None:intergenic | 40.0% | |
| GCTTGGAACTGGAATGAAAA+TGG | - | chr1.1:78467825-78467844 | None:intergenic | 40.0% | |
| GGCAAATCCACAAATATTGC+AGG | + | chr1.1:78467863-78467882 | MS.gene76289:CDS | 40.0% | |
| TAAAACAGCGACTGTTACCT+GGG | - | chr1.1:78467592-78467611 | None:intergenic | 40.0% | |
| TAATTGACCCTGGTGTTTCT+AGG | - | chr1.1:78468606-78468625 | None:intergenic | 40.0% | |
| TGAGTCGAAATCAGAGTTTG+AGG | - | chr1.1:78465122-78465141 | None:intergenic | 40.0% | |
| TGATCCAAACAGAGACAATG+TGG | - | chr1.1:78465485-78465504 | None:intergenic | 40.0% | |
| TGGAATCTCACATGCCAATT+TGG | + | chr1.1:78466253-78466272 | MS.gene76289:intron | 40.0% | |
| TGGACTGTCAAAAGTGATAC+CGG | + | chr1.1:78465729-78465748 | MS.gene76289:intron | 40.0% | |
| TTGCTGGGGTATAGTAAAGA+AGG | + | chr1.1:78466586-78466605 | MS.gene76289:intron | 40.0% | |
| ! | AGGTCTAGAGGATTAGCATT+AGG | - | chr1.1:78467564-78467583 | None:intergenic | 40.0% |
| ! | TGATCGTGCTATAGTATTGG+AGG | + | chr1.1:78468700-78468719 | MS.gene76289:CDS | 40.0% |
| !!! | CAAGGGAAAGTTTTGAAGGA+TGG | + | chr1.1:78466009-78466028 | MS.gene76289:CDS | 40.0% |
| !!! | CTGTCCATTGGCTTACTTTT+TGG | + | chr1.1:78468165-78468184 | MS.gene76289:intron | 40.0% |
| !!! | TTGTATGATTTTGGCTTGCC+TGG | + | chr1.1:78467370-78467389 | MS.gene76289:intron | 40.0% |
| AAAACAGCGACTGTTACCTG+GGG | - | chr1.1:78467591-78467610 | None:intergenic | 45.0% | |
| AAATATTCAACCGCCCTCTC+AGG | - | chr1.1:78467220-78467239 | None:intergenic | 45.0% | |
| AATATTCAACCGCCCTCTCA+GGG | - | chr1.1:78467219-78467238 | None:intergenic | 45.0% | |
| AATTTGCAGTGTGCAAAGCG+AGG | - | chr1.1:78465794-78465813 | None:intergenic | 45.0% | |
| AGAGAAAGGCTAATTGACCC+TGG | - | chr1.1:78468616-78468635 | None:intergenic | 45.0% | |
| ATAAACGAACCTATGGAGGG+CGG | + | chr1.1:78468040-78468059 | MS.gene76289:CDS | 45.0% | |
| ATTCAGTGCAAATGCAGCAC+AGG | - | chr1.1:78467756-78467775 | None:intergenic | 45.0% | |
| CAAATCCTAGATATGGGAGG+AGG | + | chr1.1:78467142-78467161 | MS.gene76289:CDS | 45.0% | |
| CCGTAGAAAATCCAGAGAAC+CGG | - | chr1.1:78467705-78467724 | None:intergenic | 45.0% | |
| CCTCCATAGGTTCGTTTATC+AGG | - | chr1.1:78468039-78468058 | None:intergenic | 45.0% | |
| CCTGATAAACGAACCTATGG+AGG | + | chr1.1:78468036-78468055 | MS.gene76289:CDS | 45.0% | |
| CTTGAGGTGAAACAGACACT+GGG | - | chr1.1:78466704-78466723 | None:intergenic | 45.0% | |
| GAACAACCTATTGGGACAGA+TGG | + | chr1.1:78468205-78468224 | MS.gene76289:CDS | 45.0% | |
| GATACCGGCCTTACAACTTA+GGG | + | chr1.1:78465744-78465763 | MS.gene76289:intron | 45.0% | |
| GCTTTGCACACTGCAAATTG+TGG | + | chr1.1:78465795-78465814 | MS.gene76289:intron | 45.0% | |
| GTGGTCTAAAAGGTAGTTGG+CGG | - | chr1.1:78468759-78468778 | None:intergenic | 45.0% | |
| TAGGTTCGTTTATCAGGCGA+AGG | - | chr1.1:78468033-78468052 | None:intergenic | 45.0% | |
| TATTTACGTAGCAGTTGCCG+AGG | - | chr1.1:78466916-78466935 | None:intergenic | 45.0% | |
| TCGCCTGATAAACGAACCTA+TGG | + | chr1.1:78468033-78468052 | MS.gene76289:CDS | 45.0% | |
| TCTCACATGCCAATTTGGAG+TGG | + | chr1.1:78466258-78466277 | MS.gene76289:intron | 45.0% | |
| TGATACCGGCCTTACAACTT+AGG | + | chr1.1:78465743-78465762 | MS.gene76289:intron | 45.0% | |
| TGCCTTCAATAACCCTGAGA+GGG | + | chr1.1:78467204-78467223 | MS.gene76289:CDS | 45.0% | |
| TTACAGGGCCTGCCAAATAT+TGG | + | chr1.1:78467662-78467681 | MS.gene76289:intron | 45.0% | |
| TTAGGTCCACTTGAGGTAAC+AGG | - | chr1.1:78467546-78467565 | None:intergenic | 45.0% | |
| TTCAGTGCAAATGCAGCACA+GGG | - | chr1.1:78467755-78467774 | None:intergenic | 45.0% | |
| TTGAGGTGAAACAGACACTG+GGG | - | chr1.1:78466703-78466722 | None:intergenic | 45.0% | |
| TTGCCAAGCTCTTGTAGCAT+GGG | - | chr1.1:78467962-78467981 | None:intergenic | 45.0% | |
| TTTGAAGGATGGTACCACCT+TGG | + | chr1.1:78466020-78466039 | MS.gene76289:CDS | 45.0% | |
| TTTGCCAAGCTCTTGTAGCA+TGG | - | chr1.1:78467963-78467982 | None:intergenic | 45.0% | |
| ! | AGGGAAGGTTCTGATGTCTA+TGG | + | chr1.1:78467067-78467086 | MS.gene76289:intron | 45.0% |
| ! | CCGGTTCTCTGGATTTTCTA+CGG | + | chr1.1:78467702-78467721 | MS.gene76289:CDS | 45.0% |
| ! | GGGAAGGTTCTGATGTCTAT+GGG | + | chr1.1:78467068-78467087 | MS.gene76289:intron | 45.0% |
| ! | GGTGTGACAGTTACTGATTG+TGG | - | chr1.1:78468242-78468261 | None:intergenic | 45.0% |
| !! | ATAAGCATTTGCTGTGCAGC+AGG | - | chr1.1:78465985-78466004 | None:intergenic | 45.0% |
| !! | GAGATTGATTCGGGATCATC+AGG | + | chr1.1:78468000-78468019 | MS.gene76289:CDS | 45.0% |
| !!! | AGTTTTGGTTGGTTGGTGTG+TGG | + | chr1.1:78466233-78466252 | MS.gene76289:intron | 45.0% |
| !! | AAAATATTATTCATAAATTT+AGG | + | chr1.1:78467413-78467432 | MS.gene76289:intron | 5.0% |
| !! | AAATATTATTCATAAATTTA+GGG | + | chr1.1:78467414-78467433 | MS.gene76289:intron | 5.0% |
| !! | ATAAATAAGTTATTATTTAA+TGG | + | chr1.1:78465709-78465728 | MS.gene76289:intron | 5.0% |
| !! | ATTAAATAATAACTTATTTA+TGG | - | chr1.1:78465710-78465729 | None:intergenic | 5.0% |
| !!! | ATAATAAAAAAAAATTCTTT+TGG | + | chr1.1:78467619-78467638 | MS.gene76289:intron | 5.0% |
| !!! | TAATAAAAAAAAATTCTTTT+GGG | + | chr1.1:78467620-78467639 | MS.gene76289:intron | 5.0% |
| ACCACAGACCCTTAGATAGC+TGG | - | chr1.1:78466313-78466332 | None:intergenic | 50.0% | |
| AGATATGGGAGGAGGAAGCT+GGG | + | chr1.1:78467150-78467169 | MS.gene76289:CDS | 50.0% | |
| AGCTCCTGCTCCTATATCCT+CGG | + | chr1.1:78466896-78466915 | MS.gene76289:CDS | 50.0% | |
| AGCTTCCTCCTCCCATATCT+AGG | - | chr1.1:78467150-78467169 | None:intergenic | 50.0% | |
| ATCAGTAACTGTCACACCCG+AGG | + | chr1.1:78468244-78468263 | MS.gene76289:CDS | 50.0% | |
| CAAACTTCTCTCACCTTCGC+TGG | - | chr1.1:78466519-78466538 | None:intergenic | 50.0% | |
| CACCAGCACCAATATTTGGC+AGG | - | chr1.1:78467673-78467692 | None:intergenic | 50.0% | |
| CACTGACACACGTCAAACAC+CGG | + | chr1.1:78465568-78465587 | MS.gene76289:intron | 50.0% | |
| CCACAGACCCTTAGATAGCT+GGG | - | chr1.1:78466312-78466331 | None:intergenic | 50.0% | |
| CTGCCTTCAATAACCCTGAG+AGG | + | chr1.1:78467203-78467222 | MS.gene76289:CDS | 50.0% | |
| CTTCAATAACCCTGAGAGGG+CGG | + | chr1.1:78467207-78467226 | MS.gene76289:CDS | 50.0% | |
| GCAGCACCAGCACCAATATT+TGG | - | chr1.1:78467677-78467696 | None:intergenic | 50.0% | |
| GCTGCATCTAATCTGGTTGC+CGG | + | chr1.1:78467094-78467113 | MS.gene76289:CDS | 50.0% | |
| GCTTGAGGTGAAACAGACAC+TGG | - | chr1.1:78466705-78466724 | None:intergenic | 50.0% | |
| GTAGCAGTTGCCGAGGATAT+AGG | - | chr1.1:78466909-78466928 | None:intergenic | 50.0% | |
| GTTCGTCGAACTCATGCATG+TGG | - | chr1.1:78468778-78468797 | None:intergenic | 50.0% | |
| TAGATATGGGAGGAGGAAGC+TGG | + | chr1.1:78467149-78467168 | MS.gene76289:CDS | 50.0% | |
| TAGCTCGCAATGCTTGGAAC+TGG | - | chr1.1:78467836-78467855 | None:intergenic | 50.0% | |
| TAGGAGCAGCACTTGTCTGT+GGG | - | chr1.1:78466671-78466690 | None:intergenic | 50.0% | |
| TGAGGGAAAACCGAGTCTTG+TGG | - | chr1.1:78465104-78465123 | None:intergenic | 50.0% | |
| TGAGGTGAAACAGACACTGG+GGG | - | chr1.1:78466702-78466721 | None:intergenic | 50.0% | |
| TGCACAACCTGTGAATCCTG+AGG | + | chr1.1:78467485-78467504 | MS.gene76289:CDS | 50.0% | |
| TGTTCCCTCCAAGTTGCTAC+CGG | - | chr1.1:78467116-78467135 | None:intergenic | 50.0% | |
| TTCAAATGCTCCTCCAGCGA+AGG | + | chr1.1:78466503-78466522 | MS.gene76289:CDS | 50.0% | |
| TTCAATAGCTTGGCGCTCCT+CGG | - | chr1.1:78468264-78468283 | None:intergenic | 50.0% | |
| TTCACAGGTTGTGCACTTGC+AGG | - | chr1.1:78467480-78467499 | None:intergenic | 50.0% | |
| ! | AGGTTCTGATGTCTATGGGC+AGG | + | chr1.1:78467072-78467091 | MS.gene76289:CDS | 50.0% |
| ! | GTTCCAAGCATTGCGAGCTA+TGG | + | chr1.1:78467836-78467855 | MS.gene76289:intron | 50.0% |
| ! | TCAAAGGTGTGTCCTGTGTC+CGG | - | chr1.1:78465590-78465609 | None:intergenic | 50.0% |
| ! | TGCTGGAGCTTCAGCTTGTT+CGG | - | chr1.1:78467445-78467464 | None:intergenic | 50.0% |
| !! | AATATTGGTGCTGGTGCTGC+TGG | + | chr1.1:78467677-78467696 | MS.gene76289:CDS | 50.0% |
| AACCTATGGAGGGCGGAGAA+GGG | + | chr1.1:78468047-78468066 | MS.gene76289:CDS | 55.0% | |
| ACACGTCAAACACCGGACAC+AGG | + | chr1.1:78465575-78465594 | MS.gene76289:intron | 55.0% | |
| ACCTGGGGAAAGAGGTCTAG+AGG | - | chr1.1:78467576-78467595 | None:intergenic | 55.0% | |
| ACTTCTCTCACCTTCGCTGG+AGG | - | chr1.1:78466516-78466535 | None:intergenic | 55.0% | |
| AGCATTGCGAGCTATGGTGC+AGG | + | chr1.1:78467842-78467861 | MS.gene76289:CDS | 55.0% | |
| AGGAGCAGCACTTGTCTGTG+GGG | - | chr1.1:78466670-78466689 | None:intergenic | 55.0% | |
| AGGCGCAGCCCTAAGTTGTA+AGG | - | chr1.1:78465755-78465774 | None:intergenic | 55.0% | |
| AGGTGAAACAGACACTGGGG+GGG | - | chr1.1:78466700-78466719 | None:intergenic | 55.0% | |
| AGTAGACCCTTCACCAGACG+CGG | - | chr1.1:78466481-78466500 | None:intergenic | 55.0% | |
| CAGCAGCCATCTGTCCCAAT+AGG | - | chr1.1:78468214-78468233 | None:intergenic | 55.0% | |
| CAGCCCATGCTACAAGAGCT+TGG | + | chr1.1:78467956-78467975 | MS.gene76289:intron | 55.0% | |
| CCACTTGAGGTAACAGGAGC+AGG | - | chr1.1:78467540-78467559 | None:intergenic | 55.0% | |
| CCCAGCTATCTAAGGGTCTG+TGG | + | chr1.1:78466309-78466328 | MS.gene76289:intron | 55.0% | |
| CCTGCTCCTGTTACCTCAAG+TGG | + | chr1.1:78467537-78467556 | MS.gene76289:CDS | 55.0% | |
| CGAAGTCACGCCACAAGACT+CGG | + | chr1.1:78465091-78465110 | MS.gene76289:CDS | 55.0% | |
| CGACTGTTACCTGGGGAAAG+AGG | - | chr1.1:78467584-78467603 | None:intergenic | 55.0% | |
| CGCCCTCTCAGGGTTATTGA+AGG | - | chr1.1:78467209-78467228 | None:intergenic | 55.0% | |
| CTATTGGGACAGATGGCTGC+TGG | + | chr1.1:78468212-78468231 | MS.gene76289:CDS | 55.0% | |
| GAAGGATGGTACCACCTTGG+AGG | + | chr1.1:78466023-78466042 | MS.gene76289:CDS | 55.0% | |
| GAGGATATAGGAGCAGGAGC+TGG | - | chr1.1:78466897-78466916 | None:intergenic | 55.0% | |
| GAGGTGAAACAGACACTGGG+GGG | - | chr1.1:78466701-78466720 | None:intergenic | 55.0% | |
| GCACCATAGCTCGCAATGCT+TGG | - | chr1.1:78467842-78467861 | None:intergenic | 55.0% | |
| GCAGCCCTAAGTTGTAAGGC+CGG | - | chr1.1:78465751-78465770 | None:intergenic | 55.0% | |
| GGCCTGCCAAATATTGGTGC+TGG | + | chr1.1:78467668-78467687 | MS.gene76289:CDS | 55.0% | |
| GTAGGAGCAGCACTTGTCTG+TGG | - | chr1.1:78466672-78466691 | None:intergenic | 55.0% | |
| GTTGCCGAGGATATAGGAGC+AGG | - | chr1.1:78466903-78466922 | None:intergenic | 55.0% | |
| GTTGCCGGTAGCAACTTGGA+GGG | + | chr1.1:78467109-78467128 | MS.gene76289:CDS | 55.0% | |
| TCAAGCTCCTGCTGCAACTG+CGG | + | chr1.1:78466719-78466738 | MS.gene76289:CDS | 55.0% | |
| TCAATAGCTTGGCGCTCCTC+GGG | - | chr1.1:78468263-78468282 | None:intergenic | 55.0% | |
| TCCTCTAGACCTCTTTCCCC+AGG | + | chr1.1:78467572-78467591 | MS.gene76289:CDS | 55.0% | |
| TCTGGTTGCCGGTAGCAACT+TGG | + | chr1.1:78467105-78467124 | MS.gene76289:CDS | 55.0% | |
| TGGGCAGGCTGCATCTAATC+TGG | + | chr1.1:78467087-78467106 | MS.gene76289:CDS | 55.0% | |
| ! | GAAGGTGCAGCAACAGATGC+AGG | - | chr1.1:78466867-78466886 | None:intergenic | 55.0% |
| ! | GCTGGAGCTTCAGCTTGTTC+GGG | - | chr1.1:78467444-78467463 | None:intergenic | 55.0% |
| AGTAAGCCCGCGTCTGGTGA+AGG | + | chr1.1:78466471-78466490 | MS.gene76289:CDS | 60.0% | |
| ATAGGAGCAGGAGCTGGAGC+TGG | - | chr1.1:78466891-78466910 | None:intergenic | 60.0% | |
| GAACCTATGGAGGGCGGAGA+AGG | + | chr1.1:78468046-78468065 | MS.gene76289:CDS | 60.0% | |
| GACACTGGGGGGGTTGAAGT+AGG | - | chr1.1:78466690-78466709 | None:intergenic | 60.0% | |
| GCAGTTGCAGCAGGAGCTTG+AGG | - | chr1.1:78466720-78466739 | None:intergenic | 60.0% | |
| GCTGCAGCCTCAGGATTCAC+AGG | - | chr1.1:78467495-78467514 | None:intergenic | 60.0% | |
| GGGAGGAGGAAGCTGGGATA+GGG | + | chr1.1:78467156-78467175 | MS.gene76289:CDS | 60.0% | |
| GGTTGCCGGTAGCAACTTGG+AGG | + | chr1.1:78467108-78467127 | MS.gene76289:CDS | 60.0% | |
| GTAAGCCCGCGTCTGGTGAA+GGG | + | chr1.1:78466472-78466491 | MS.gene76289:CDS | 60.0% | |
| GTAGACCCTTCACCAGACGC+GGG | - | chr1.1:78466480-78466499 | None:intergenic | 60.0% | |
| GTTGTGCACTTGCAGGCGCT+CGG | - | chr1.1:78467473-78467492 | None:intergenic | 60.0% | |
| TAGGAGCAGGAGCTGGAGCT+GGG | - | chr1.1:78466890-78466909 | None:intergenic | 60.0% | |
| TGGGAGGAGGAAGCTGGGAT+AGG | + | chr1.1:78467155-78467174 | MS.gene76289:CDS | 60.0% | |
| TTGTGCACTTGCAGGCGCTC+GGG | - | chr1.1:78467472-78467491 | None:intergenic | 60.0% | |
| AGGAGCAGGAGCTGGAGCTG+GGG | - | chr1.1:78466889-78466908 | None:intergenic | 65.0% | |
| CACCCTTCTCCGCCCTCCAT+AGG | - | chr1.1:78468052-78468071 | None:intergenic | 65.0% | |
| GGAGCAGGCTGAGCTGCTTG+TGG | - | chr1.1:78467525-78467544 | None:intergenic | 65.0% | |
| TGGCAGAGTAAGCCCGCGTC+TGG | + | chr1.1:78466465-78466484 | MS.gene76289:intron | 65.0% | |
| !! | TGCTGCTGGTGCCGGTTCTC+TGG | + | chr1.1:78467691-78467710 | MS.gene76289:CDS | 65.0% |
| GCAGGAGCTGGAGCTGGGGA+AGG | - | chr1.1:78466885-78466904 | None:intergenic | 70.0% | |
| GGAGCTGCAGCTGCAGCCTC+AGG | - | chr1.1:78467504-78467523 | None:intergenic | 70.0% | |
| !! | CACGGTGCCGCAGTTGCAGC+AGG | - | chr1.1:78466729-78466748 | None:intergenic | 70.0% |
| !! | GGTGCTGGTGCTGCTGGTGC+CGG | + | chr1.1:78467683-78467702 | MS.gene76289:CDS | 70.0% |
| GCAGGCGCTCGGGACACTGC+TGG | - | chr1.1:78467462-78467481 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 78465047 | 78468802 | 78465047 | ID=MS.gene76289 |
| chr1.1 | mRNA | 78465047 | 78468802 | 78465047 | ID=MS.gene76289.t1;Parent=MS.gene76289 |
| chr1.1 | exon | 78465047 | 78465112 | 78465047 | ID=MS.gene76289.t1.exon1;Parent=MS.gene76289.t1 |
| chr1.1 | CDS | 78465047 | 78465112 | 78465047 | ID=cds.MS.gene76289.t1;Parent=MS.gene76289.t1 |
| chr1.1 | exon | 78465931 | 78466092 | 78465931 | ID=MS.gene76289.t1.exon2;Parent=MS.gene76289.t1 |
| chr1.1 | CDS | 78465931 | 78466092 | 78465931 | ID=cds.MS.gene76289.t1;Parent=MS.gene76289.t1 |
| chr1.1 | exon | 78466471 | 78466524 | 78466471 | ID=MS.gene76289.t1.exon3;Parent=MS.gene76289.t1 |
| chr1.1 | CDS | 78466471 | 78466524 | 78466471 | ID=cds.MS.gene76289.t1;Parent=MS.gene76289.t1 |
| chr1.1 | exon | 78466666 | 78466745 | 78466666 | ID=MS.gene76289.t1.exon4;Parent=MS.gene76289.t1 |
| chr1.1 | CDS | 78466666 | 78466745 | 78466666 | ID=cds.MS.gene76289.t1;Parent=MS.gene76289.t1 |
| chr1.1 | exon | 78466863 | 78466928 | 78466863 | ID=MS.gene76289.t1.exon5;Parent=MS.gene76289.t1 |
| chr1.1 | CDS | 78466863 | 78466928 | 78466863 | ID=cds.MS.gene76289.t1;Parent=MS.gene76289.t1 |
| chr1.1 | exon | 78467069 | 78467246 | 78467069 | ID=MS.gene76289.t1.exon6;Parent=MS.gene76289.t1 |
| chr1.1 | CDS | 78467069 | 78467246 | 78467069 | ID=cds.MS.gene76289.t1;Parent=MS.gene76289.t1 |
| chr1.1 | exon | 78467435 | 78467593 | 78467435 | ID=MS.gene76289.t1.exon7;Parent=MS.gene76289.t1 |
| chr1.1 | CDS | 78467435 | 78467593 | 78467435 | ID=cds.MS.gene76289.t1;Parent=MS.gene76289.t1 |
| chr1.1 | exon | 78467668 | 78467736 | 78467668 | ID=MS.gene76289.t1.exon8;Parent=MS.gene76289.t1 |
| chr1.1 | CDS | 78467668 | 78467736 | 78467668 | ID=cds.MS.gene76289.t1;Parent=MS.gene76289.t1 |
| chr1.1 | exon | 78467837 | 78467884 | 78467837 | ID=MS.gene76289.t1.exon9;Parent=MS.gene76289.t1 |
| chr1.1 | CDS | 78467837 | 78467884 | 78467837 | ID=cds.MS.gene76289.t1;Parent=MS.gene76289.t1 |
| chr1.1 | exon | 78467959 | 78468068 | 78467959 | ID=MS.gene76289.t1.exon10;Parent=MS.gene76289.t1 |
| chr1.1 | CDS | 78467959 | 78468068 | 78467959 | ID=cds.MS.gene76289.t1;Parent=MS.gene76289.t1 |
| chr1.1 | exon | 78468205 | 78468286 | 78468205 | ID=MS.gene76289.t1.exon11;Parent=MS.gene76289.t1 |
| chr1.1 | CDS | 78468205 | 78468286 | 78468205 | ID=cds.MS.gene76289.t1;Parent=MS.gene76289.t1 |
| chr1.1 | exon | 78468683 | 78468802 | 78468683 | ID=MS.gene76289.t1.exon12;Parent=MS.gene76289.t1 |
| chr1.1 | CDS | 78468683 | 78468802 | 78468683 | ID=cds.MS.gene76289.t1;Parent=MS.gene76289.t1 |
| Gene Sequence |
| Protein sequence |
