Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90381.t1 | XP_013465631.1 | 93.2 | 366 | 8 | 1 | 1 | 349 | 1 | 366 | 9.00E-186 | 659.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90381.t1 | Q84L33 | 66.8 | 373 | 98 | 4 | 1 | 349 | 1 | 371 | 2.3e-129 | 463.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90381.t1 | G7ZYZ1 | 93.2 | 366 | 8 | 1 | 1 | 349 | 1 | 366 | 6.5e-186 | 659.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene90381 | 0.811903 | 5.55E-51 | -1.69E-46 |
| MS.gene049350 | MS.gene90381 | 0.835689 | 1.45E-56 | -1.69E-46 |
| MS.gene049411 | MS.gene90381 | 0.806933 | 6.47E-50 | -1.69E-46 |
| MS.gene049807 | MS.gene90381 | 0.852817 | 3.60E-61 | -1.69E-46 |
| MS.gene049887 | MS.gene90381 | 0.867941 | 9.44E-66 | -1.69E-46 |
| MS.gene050689 | MS.gene90381 | 0.804084 | 2.56E-49 | -1.69E-46 |
| MS.gene050752 | MS.gene90381 | 0.849334 | 3.46E-60 | -1.69E-46 |
| MS.gene050838 | MS.gene90381 | 0.879981 | 7.99E-70 | -1.69E-46 |
| MS.gene050955 | MS.gene90381 | 0.829157 | 6.02E-55 | -1.69E-46 |
| MS.gene051003 | MS.gene90381 | 0.854884 | 9.14E-62 | -1.69E-46 |
| MS.gene051234 | MS.gene90381 | 0.892767 | 1.17E-74 | -1.69E-46 |
| MS.gene051343 | MS.gene90381 | 0.804118 | 2.52E-49 | -1.69E-46 |
| MS.gene051642 | MS.gene90381 | 0.811876 | 5.62E-51 | -1.69E-46 |
| MS.gene051700 | MS.gene90381 | 0.811385 | 7.19E-51 | -1.69E-46 |
| MS.gene051850 | MS.gene90381 | 0.818236 | 2.18E-52 | -1.69E-46 |
| MS.gene051885 | MS.gene90381 | 0.86605 | 3.78E-65 | -1.69E-46 |
| MS.gene052133 | MS.gene90381 | 0.817065 | 4.00E-52 | -1.69E-46 |
| MS.gene052335 | MS.gene90381 | 0.859237 | 4.75E-63 | -1.69E-46 |
| MS.gene052516 | MS.gene90381 | 0.809587 | 1.76E-50 | -1.69E-46 |
| MS.gene052947 | MS.gene90381 | 0.829669 | 4.52E-55 | -1.69E-46 |
| MS.gene053122 | MS.gene90381 | 0.80344 | 3.48E-49 | -1.69E-46 |
| MS.gene053143 | MS.gene90381 | 0.837954 | 3.83E-57 | -1.69E-46 |
| MS.gene053144 | MS.gene90381 | 0.837281 | 5.70E-57 | -1.69E-46 |
| MS.gene053536 | MS.gene90381 | 0.806472 | 8.09E-50 | -1.69E-46 |
| MS.gene053538 | MS.gene90381 | 0.812292 | 4.56E-51 | -1.69E-46 |
| MS.gene053581 | MS.gene90381 | 0.865308 | 6.49E-65 | -1.69E-46 |
| MS.gene054403 | MS.gene90381 | 0.84823 | 7.00E-60 | -1.69E-46 |
| MS.gene054554 | MS.gene90381 | 0.810988 | 8.76E-51 | -1.69E-46 |
| MS.gene054584 | MS.gene90381 | 0.806736 | 7.12E-50 | -1.69E-46 |
| MS.gene055465 | MS.gene90381 | 0.81906 | 1.42E-52 | -1.69E-46 |
| MS.gene055466 | MS.gene90381 | 0.810497 | 1.12E-50 | -1.69E-46 |
| MS.gene055468 | MS.gene90381 | 0.838426 | 2.90E-57 | -1.69E-46 |
| MS.gene055469 | MS.gene90381 | 0.817176 | 3.78E-52 | -1.69E-46 |
| MS.gene055513 | MS.gene90381 | 0.806928 | 6.48E-50 | -1.69E-46 |
| MS.gene055537 | MS.gene90381 | 0.809492 | 1.84E-50 | -1.69E-46 |
| MS.gene055555 | MS.gene90381 | 0.808328 | 3.27E-50 | -1.69E-46 |
| MS.gene055580 | MS.gene90381 | -0.839955 | 1.16E-57 | -1.69E-46 |
| MS.gene055764 | MS.gene90381 | 0.808134 | 3.60E-50 | -1.69E-46 |
| MS.gene056043 | MS.gene90381 | -0.850854 | 1.30E-60 | -1.69E-46 |
| MS.gene056075 | MS.gene90381 | 0.848476 | 5.98E-60 | -1.69E-46 |
| MS.gene057102 | MS.gene90381 | 0.827337 | 1.65E-54 | -1.69E-46 |
| MS.gene057705 | MS.gene90381 | 0.822594 | 2.18E-53 | -1.69E-46 |
| MS.gene058149 | MS.gene90381 | 0.813824 | 2.11E-51 | -1.69E-46 |
| MS.gene058492 | MS.gene90381 | 0.818608 | 1.79E-52 | -1.69E-46 |
| MS.gene058668 | MS.gene90381 | 0.804574 | 2.02E-49 | -1.69E-46 |
| MS.gene058720 | MS.gene90381 | 0.801717 | 7.89E-49 | -1.69E-46 |
| MS.gene058852 | MS.gene90381 | 0.830424 | 2.96E-55 | -1.69E-46 |
| MS.gene059171 | MS.gene90381 | 0.813637 | 2.31E-51 | -1.69E-46 |
| MS.gene059227 | MS.gene90381 | 0.851829 | 6.88E-61 | -1.69E-46 |
| MS.gene06001 | MS.gene90381 | 0.810609 | 1.06E-50 | -1.69E-46 |
| MS.gene060429 | MS.gene90381 | 0.800255 | 1.57E-48 | -1.69E-46 |
| MS.gene061006 | MS.gene90381 | 0.810521 | 1.11E-50 | -1.69E-46 |
| MS.gene061007 | MS.gene90381 | 0.808312 | 3.29E-50 | -1.69E-46 |
| MS.gene061100 | MS.gene90381 | 0.837485 | 5.06E-57 | -1.69E-46 |
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90381.t1 | MTR_2g105410 | 93.169 | 366 | 8 | 1 | 1 | 349 | 1 | 366 | 0.0 | 694 |
| MS.gene90381.t1 | MTR_1g111090 | 55.303 | 396 | 130 | 6 | 1 | 349 | 1 | 396 | 1.91e-139 | 401 |
| MS.gene90381.t1 | MTR_7g407040 | 52.151 | 372 | 153 | 4 | 1 | 349 | 1 | 370 | 1.11e-120 | 353 |
| MS.gene90381.t1 | MTR_7g037380 | 83.871 | 62 | 7 | 1 | 18 | 76 | 69 | 130 | 1.91e-26 | 103 |
| MS.gene90381.t1 | MTR_7g006500 | 58.065 | 62 | 24 | 2 | 105 | 166 | 53 | 112 | 5.00e-13 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90381.t1 | AT1G79650 | 68.097 | 373 | 93 | 5 | 1 | 349 | 1 | 371 | 0.0 | 508 |
| MS.gene90381.t1 | AT1G79650 | 69.210 | 367 | 93 | 5 | 1 | 349 | 1 | 365 | 0.0 | 508 |
| MS.gene90381.t1 | AT1G79650 | 63.980 | 397 | 93 | 5 | 1 | 349 | 1 | 395 | 9.17e-178 | 498 |
| MS.gene90381.t1 | AT1G16190 | 64.380 | 379 | 94 | 9 | 1 | 349 | 1 | 368 | 1.25e-166 | 469 |
| MS.gene90381.t1 | AT1G79650 | 63.539 | 373 | 90 | 6 | 1 | 349 | 1 | 351 | 1.11e-163 | 461 |
| MS.gene90381.t1 | AT1G16190 | 62.921 | 356 | 91 | 9 | 24 | 349 | 1 | 345 | 3.73e-150 | 427 |
| MS.gene90381.t1 | AT5G38470 | 56.955 | 381 | 128 | 9 | 1 | 349 | 1 | 377 | 5.46e-134 | 387 |
| MS.gene90381.t1 | AT3G02540 | 50.119 | 419 | 139 | 9 | 1 | 349 | 1 | 419 | 2.35e-127 | 372 |
| MS.gene90381.t1 | AT3G02540 | 49.761 | 418 | 141 | 9 | 1 | 349 | 1 | 418 | 2.61e-126 | 369 |
| MS.gene90381.t1 | AT5G38470 | 55.937 | 320 | 106 | 8 | 1 | 288 | 1 | 317 | 4.86e-105 | 311 |
| MS.gene90381.t1 | AT3G02540 | 46.488 | 299 | 94 | 7 | 1 | 233 | 1 | 299 | 2.41e-73 | 229 |
| MS.gene90381.t1 | AT5G16090 | 50.000 | 76 | 38 | 0 | 1 | 76 | 1 | 76 | 2.86e-19 | 84.3 |
| MS.gene90381.t1 | AT5G16090 | 44.444 | 99 | 51 | 3 | 246 | 343 | 74 | 169 | 1.83e-17 | 79.3 |
Find 93 sgRNAs with CRISPR-Local
Find 319 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCTTTCAGGAGACAATTTC+TGG | 0.118069 | 2.1:-577889 | MS.gene90381:intron |
| TGGACATGGGTGGTGGCAGC+TGG | 0.265592 | 2.1:-578301 | MS.gene90381:CDS |
| GTCACTACCGGAGTTGTTCC+TGG | 0.267181 | 2.1:-578042 | MS.gene90381:CDS |
| CCTGTTTCAGTTGGATTACT+TGG | 0.271776 | 2.1:+578069 | None:intergenic |
| GCAGACTATTCAACAACTTA+TGG | 0.276186 | 2.1:-578321 | MS.gene90381:CDS |
| TCTATTGCAGCCTGTACTTC+AGG | 0.312035 | 2.1:-577617 | MS.gene90381:intron |
| ACAGCAATTTCTGCTGCTTC+AGG | 0.324791 | 2.1:+578108 | None:intergenic |
| TGGGTGGTGGCAGCTGGGAC+AGG | 0.346817 | 2.1:-578295 | MS.gene90381:CDS |
| CAGGAGACAATTTCTGGTGC+TGG | 0.348931 | 2.1:-577883 | MS.gene90381:CDS |
| CCGATTGCCTCCTGCTCAGC+TGG | 0.353647 | 2.1:+576977 | None:intergenic |
| ATATTCAAGGGAGACGAGTT+AGG | 0.365109 | 2.1:+578015 | None:intergenic |
| ATTGGCAGCCAACTACTTAC+TGG | 0.376662 | 2.1:-576749 | MS.gene90381:CDS |
| GCTGCTTCAAATTTAGTTGC+TGG | 0.382013 | 2.1:-578356 | MS.gene90381:CDS |
| TCTTGTTGTCATGCTTAGTA+AGG | 0.396216 | 2.1:-581057 | MS.gene90381:intron |
| TCACTACCGGAGTTGTTCCT+GGG | 0.402891 | 2.1:-578041 | MS.gene90381:CDS |
| CCAAGTAATCCAACTGAAAC+AGG | 0.407427 | 2.1:-578069 | MS.gene90381:CDS |
| TTAGATACCTGGAGAATTTG+TGG | 0.408356 | 2.1:+577707 | None:intergenic |
| ACAATTTCTGGTGCTGGAGC+TGG | 0.411957 | 2.1:-577877 | MS.gene90381:CDS |
| TCTGGTGCTGGAGCTGGAGC+TGG | 0.428394 | 2.1:-577871 | MS.gene90381:CDS |
| AGCACGAAGAGCACGATTGA+CGG | 0.441378 | 2.1:+578268 | None:intergenic |
| AGACAAAAGCCATACTTTGT+AGG | 0.443079 | 2.1:+579360 | None:intergenic |
| CAGAGTTCATCCTTCTGATT+CGG | 0.444243 | 2.1:-581319 | MS.gene90381:intron |
| AAGAATATTGAAGACATTCA+AGG | 0.452792 | 2.1:-581182 | MS.gene90381:CDS |
| TGACATGCAGCTAGAGGCTA+TGG | 0.454971 | 2.1:-576827 | MS.gene90381:intron |
| AGTAAAGCCTTGGGATCTGC+TGG | 0.457633 | 2.1:-579666 | MS.gene90381:CDS |
| GATGAACTCTGATTTCGAAA+TGG | 0.460278 | 2.1:+581331 | None:intergenic |
| TAATGTGACGCCAGCTGAGC+AGG | 0.461283 | 2.1:-576987 | MS.gene90381:CDS |
| CCAGCTGAGCAGGAGGCAAT+CGG | 0.461594 | 2.1:-576977 | MS.gene90381:CDS |
| CTATTTGCAGAGTAAAGCCT+TGG | 0.463189 | 2.1:-579676 | MS.gene90381:intron |
| GACAATAAAGTCTCTGAAGA+TGG | 0.470434 | 2.1:-581083 | MS.gene90381:CDS |
| AGTGTTACTACAGATACTTA+TGG | 0.475618 | 2.1:-578383 | MS.gene90381:CDS |
| CTGTTTCAGTTGGATTACTT+GGG | 0.481500 | 2.1:+578070 | None:intergenic |
| GTGACCCCACCTGTTTCAGT+TGG | 0.484296 | 2.1:+578060 | None:intergenic |
| AACTACTTACTGGAAAATGC+TGG | 0.492726 | 2.1:-576739 | MS.gene90381:CDS |
| TCCCTTGAATATGTTTCCAC+AGG | 0.499007 | 2.1:-578004 | MS.gene90381:intron |
| CTTCTTGAGGAACAATCCCC+AGG | 0.503164 | 2.1:-577839 | MS.gene90381:intron |
| TACCTGGAGAATTTGTGGAT+TGG | 0.503302 | 2.1:+577712 | None:intergenic |
| AGCAGCAGAAATTGCTGTAC+CGG | 0.508726 | 2.1:-578103 | MS.gene90381:CDS |
| CTCACAGTGAAGACTTTGAA+AGG | 0.508732 | 2.1:-581357 | MS.gene90381:CDS |
| CAACGCATCTCCTGCAGTTG+TGG | 0.510395 | 2.1:-579385 | MS.gene90381:CDS |
| CTGGTTCGCTTGACTTCTTG+AGG | 0.511578 | 2.1:-577852 | MS.gene90381:CDS |
| TTTCCGAGCTCCTGAAGTAC+AGG | 0.521041 | 2.1:+577607 | None:intergenic |
| TATTTGCAGAGTAAAGCCTT+GGG | 0.523624 | 2.1:-579675 | MS.gene90381:intron |
| TACCTGTGGAAACATATTCA+AGG | 0.524366 | 2.1:+578002 | None:intergenic |
| GGGTGGTGGCAGCTGGGACA+GGG | 0.526645 | 2.1:-578294 | MS.gene90381:CDS |
| TTTGTAGGTGCCACAACTGC+AGG | 0.530119 | 2.1:+579375 | None:intergenic |
| AAGTAATCTACAGCACGCTC+TGG | 0.531024 | 2.1:+578233 | None:intergenic |
| ACTACTTACTGGAAAATGCT+GGG | 0.533868 | 2.1:-576738 | MS.gene90381:CDS |
| TACTACAGATACTTATGGAC+AGG | 0.538234 | 2.1:-578378 | MS.gene90381:CDS |
| ATCAGCAATTGTTGTCCGCA+TGG | 0.538362 | 2.1:+581146 | None:intergenic |
| ACCTGTGGAAACATATTCAA+GGG | 0.538673 | 2.1:+578003 | None:intergenic |
| GGACATGGGTGGTGGCAGCT+GGG | 0.540658 | 2.1:-578300 | MS.gene90381:CDS |
| TTACTTGGGTATTGAGCAGC+CGG | 0.541551 | 2.1:+578084 | None:intergenic |
| TATTCAAGGGAGACGAGTTA+GGG | 0.546347 | 2.1:+578016 | None:intergenic |
| TCACCCTTCAGTACCGTCCA+TGG | 0.546504 | 2.1:+577516 | None:intergenic |
| ATCCAATCCACAAATTCTCC+AGG | 0.549169 | 2.1:-577714 | MS.gene90381:intron |
| GAACCCATGGACGGTACTGA+AGG | 0.549758 | 2.1:-577520 | MS.gene90381:CDS |
| CAACTTATGGACATGGGTGG+TGG | 0.550778 | 2.1:-578308 | MS.gene90381:CDS |
| ATGTGACCGTGATGAGCAAT+TGG | 0.553039 | 2.1:-576767 | MS.gene90381:CDS |
| TGCTGGAACTTCATCTACTC+AGG | 0.553374 | 2.1:-579649 | MS.gene90381:CDS |
| GAGCTCGGAAAGCAAAATCC+AGG | 0.561167 | 2.1:-577595 | MS.gene90381:CDS |
| GAAACAGGTGGGGTCACTAC+CGG | 0.561305 | 2.1:-578054 | MS.gene90381:CDS |
| CACCCTTCAGTACCGTCCAT+GGG | 0.562359 | 2.1:+577517 | None:intergenic |
| TCAGCAATTGTTGTCCGCAT+GGG | 0.565758 | 2.1:+581147 | None:intergenic |
| TCACAGTGAAGACTTTGAAA+GGG | 0.581575 | 2.1:-581356 | MS.gene90381:CDS |
| GTTTCAAGCATTGCGGACAA+TGG | 0.588792 | 2.1:-577741 | MS.gene90381:CDS |
| TATTCAACAACTTATGGACA+TGG | 0.590819 | 2.1:-578315 | MS.gene90381:CDS |
| CAACAATTGCTGATTCACAA+TGG | 0.594059 | 2.1:-581137 | MS.gene90381:CDS |
| TCAGTTGATAAATGAACCCA+TGG | 0.600530 | 2.1:-577533 | MS.gene90381:CDS |
| CTGAGCAGGAGGCAATCGGA+AGG | 0.602554 | 2.1:-576973 | MS.gene90381:CDS |
| TCAATAAGTCTCAAGAGACC+TGG | 0.604931 | 2.1:+577577 | None:intergenic |
| CAGCCTGTACTTCAGGAGCT+CGG | 0.605573 | 2.1:-577610 | MS.gene90381:CDS |
| TGAAGTTCCAGCAGATCCCA+AGG | 0.610131 | 2.1:+579659 | None:intergenic |
| TGATAGAGCCTCTGTCATAG+AGG | 0.619305 | 2.1:-576800 | MS.gene90381:CDS |
| GACATGCAGCTAGAGGCTAT+GGG | 0.619380 | 2.1:-576826 | MS.gene90381:intron |
| AACCCATGGACGGTACTGAA+GGG | 0.627966 | 2.1:-577519 | MS.gene90381:intron |
| GGAGACGAGTTAGGGACCCC+AGG | 0.628070 | 2.1:+578024 | None:intergenic |
| TGTGACGCCAGCTGAGCAGG+AGG | 0.630237 | 2.1:-576984 | MS.gene90381:CDS |
| CTACTTACTGGAAAATGCTG+GGG | 0.630947 | 2.1:-576737 | MS.gene90381:CDS |
| GGCGTCACATTAACAGCATG+AGG | 0.631358 | 2.1:+576998 | None:intergenic |
| GTAATCCAACTGAAACAGGT+GGG | 0.636270 | 2.1:-578065 | MS.gene90381:CDS |
| AGTAATCCAACTGAAACAGG+TGG | 0.636970 | 2.1:-578066 | MS.gene90381:CDS |
| TTGATAAATGAACCCATGGA+CGG | 0.638539 | 2.1:-577529 | MS.gene90381:CDS |
| AACATACATACCGAATCAGA+AGG | 0.642123 | 2.1:+581309 | None:intergenic |
| AGGGACCCCAGGAACAACTC+CGG | 0.643664 | 2.1:+578035 | None:intergenic |
| TGGCTGCCAATTGCTCATCA+CGG | 0.645634 | 2.1:+576761 | None:intergenic |
| ATTCAACAACTTATGGACAT+GGG | 0.649122 | 2.1:-578314 | MS.gene90381:CDS |
| TGAGCAGGAGGCAATCGGAA+GGG | 0.655930 | 2.1:-576972 | MS.gene90381:intron |
| TAATCCAACTGAAACAGGTG+GGG | 0.656148 | 2.1:-578064 | MS.gene90381:CDS |
| ATATTTAGTTTCAAGCATTG+CGG | 0.659936 | 2.1:-577748 | MS.gene90381:intron |
| CAACAACTTATGGACATGGG+TGG | 0.667629 | 2.1:-578311 | MS.gene90381:CDS |
| CACTACCGGAGTTGTTCCTG+GGG | 0.671383 | 2.1:-578040 | MS.gene90381:CDS |
| GGAAAAGATAATTACCCATG+CGG | 0.704659 | 2.1:-581161 | MS.gene90381:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAATTGAATGAATATT+GGG | + | chr2.1:576847-576866 | None:intergenic | 10.0% |
| !! | TTAGAATGTTATATATAATT+AGG | + | chr2.1:577209-577228 | None:intergenic | 10.0% |
| !!! | TTTTTGTAACTTATTTTATT+TGG | - | chr2.1:578658-578677 | MS.gene90381:intron | 10.0% |
| !! | AAAAAATTGAATGAATATTG+GGG | + | chr2.1:576846-576865 | None:intergenic | 15.0% |
| !! | AAGAATGTTAATAAAAAAAG+AGG | + | chr2.1:576806-576825 | None:intergenic | 15.0% |
| !! | AATAATAAACATACAATACA+AGG | - | chr2.1:577342-577361 | MS.gene90381:intron | 15.0% |
| !! | ATCTAAATTACTTTCAATTT+AGG | - | chr2.1:577081-577100 | MS.gene90381:intron | 15.0% |
| !! | ATTAATTATAATATTAGACC+AGG | + | chr2.1:578909-578928 | None:intergenic | 15.0% |
| !! | ATTTATAAAAATAAATGGAG+AGG | - | chr2.1:580879-580898 | MS.gene90381:intron | 15.0% |
| !! | CAAAAAAATTGAATGAATAT+TGG | + | chr2.1:576848-576867 | None:intergenic | 15.0% |
| !! | GGTAAAAATAATAATTTGAA+TGG | - | chr2.1:580103-580122 | MS.gene90381:intron | 15.0% |
| !! | TACAAAAAAACATAAGTTTA+TGG | + | chr2.1:578646-578665 | None:intergenic | 15.0% |
| !! | TCTAAATTACTTTCAATTTA+GGG | - | chr2.1:577082-577101 | MS.gene90381:intron | 15.0% |
| !! | TCTCCATTTATAAAAATAAA+TGG | - | chr2.1:580874-580893 | MS.gene90381:intron | 15.0% |
| !! | TTAACAATTATTTATATGCA+GGG | - | chr2.1:579951-579970 | MS.gene90381:intron | 15.0% |
| !! | TTTAACAATTATTTATATGC+AGG | - | chr2.1:579950-579969 | MS.gene90381:intron | 15.0% |
| !!! | ATGAACACTATTTTAATTTA+GGG | + | chr2.1:579581-579600 | None:intergenic | 15.0% |
| !!! | CTCATTTTTTAATATCTTTT+TGG | - | chr2.1:578471-578490 | MS.gene90381:intron | 15.0% |
| !!! | GTAAGGTATTATTATTATTA+TGG | - | chr2.1:577046-577065 | MS.gene90381:intron | 15.0% |
| !!! | TATGAACACTATTTTAATTT+AGG | + | chr2.1:579582-579601 | None:intergenic | 15.0% |
| !!! | TCTCCATTTATTTTTATAAA+TGG | + | chr2.1:580880-580899 | None:intergenic | 15.0% |
| !! | AAAAATTGAATGAATATTGG+GGG | + | chr2.1:576845-576864 | None:intergenic | 20.0% |
| !! | ATCAAATAAGATAAATCACA+AGG | + | chr2.1:579926-579945 | None:intergenic | 20.0% |
| !! | ATTATTATTGAACAGAACTT+TGG | + | chr2.1:579346-579365 | None:intergenic | 20.0% |
| !! | CAAAATAAAGTACAAAGTAA+CGG | + | chr2.1:580169-580188 | None:intergenic | 20.0% |
| !! | CTAAATTACTTTCAATTTAG+GGG | - | chr2.1:577083-577102 | MS.gene90381:intron | 20.0% |
| !! | TATAATAGAAACATGACTAT+GGG | + | chr2.1:580668-580687 | None:intergenic | 20.0% |
| !! | TCGTAGAATATAAATTTAGT+TGG | - | chr2.1:578338-578357 | MS.gene90381:CDS | 20.0% |
| !! | TCTTTAATTATTGAGTATGA+TGG | - | chr2.1:577759-577778 | MS.gene90381:intron | 20.0% |
| !! | TGAAACTAATTAATGATGTT+GGG | - | chr2.1:580792-580811 | MS.gene90381:intron | 20.0% |
| !! | TTATAATAGAAACATGACTA+TGG | + | chr2.1:580669-580688 | None:intergenic | 20.0% |
| !! | TTATGGTTGTAATTTGAATT+TGG | - | chr2.1:578883-578902 | MS.gene90381:intron | 20.0% |
| !! | TTGAAACTAATTAATGATGT+TGG | - | chr2.1:580791-580810 | MS.gene90381:intron | 20.0% |
| !!! | CAAATTATTATTTTTACCTG+TGG | + | chr2.1:580101-580120 | None:intergenic | 20.0% |
| !!! | GTTTTGTTATTATCAGATAA+TGG | - | chr2.1:576873-576892 | MS.gene90381:intron | 20.0% |
| !!! | TATTAGAGATAATTTTGATC+AGG | - | chr2.1:581051-581070 | MS.gene90381:intron | 20.0% |
| !!! | TCAATTTCATTTTTTTGCAA+AGG | + | chr2.1:581208-581227 | None:intergenic | 20.0% |
| !!! | TGTATTACTGATTATAAGAA+TGG | + | chr2.1:578847-578866 | None:intergenic | 20.0% |
| ! | AAAATAGATAGTTAGATACC+TGG | + | chr2.1:580393-580412 | None:intergenic | 25.0% |
| ! | AACTGAACATTACTCTTAAA+AGG | + | chr2.1:577628-577647 | None:intergenic | 25.0% |
| ! | AAGAATATTGAAGACATTCA+AGG | - | chr2.1:576904-576923 | MS.gene90381:intron | 25.0% |
| ! | ACATTGAAATGTATTTCAGA+AGG | + | chr2.1:579674-579693 | None:intergenic | 25.0% |
| ! | AGACAAAATCTACATAAAGA+TGG | + | chr2.1:578806-578825 | None:intergenic | 25.0% |
| ! | AGGTCATGGTAAAATTAAAT+TGG | - | chr2.1:579000-579019 | MS.gene90381:intron | 25.0% |
| ! | ATACACACAAAATATAGATG+TGG | + | chr2.1:580837-580856 | None:intergenic | 25.0% |
| ! | ATGATTGTAAAATGCAAAGA+TGG | + | chr2.1:580637-580656 | None:intergenic | 25.0% |
| ! | ATTCTTGATGCTAAAAGTTA+TGG | - | chr2.1:578866-578885 | MS.gene90381:intron | 25.0% |
| ! | GAAACTAAATATGCAGAATA+TGG | + | chr2.1:580330-580349 | None:intergenic | 25.0% |
| ! | GAGAGAAATAATTGAATAGA+TGG | + | chr2.1:578949-578968 | None:intergenic | 25.0% |
| ! | GGTCATGGTAAAATTAAATT+GGG | - | chr2.1:579001-579020 | MS.gene90381:intron | 25.0% |
| ! | TAAAAATGAATCAGCACATA+TGG | + | chr2.1:581235-581254 | None:intergenic | 25.0% |
| ! | TAACAACATTGAAGTAAAGT+AGG | + | chr2.1:577699-577718 | None:intergenic | 25.0% |
| ! | TACACACAAAATATAGATGT+GGG | + | chr2.1:580836-580855 | None:intergenic | 25.0% |
| ! | TATAAGAATTTAATGCAGCA+TGG | - | chr2.1:577304-577323 | MS.gene90381:intron | 25.0% |
| ! | TCCACTTATAAGTTGTTTAA+CGG | - | chr2.1:577132-577151 | MS.gene90381:intron | 25.0% |
| ! | TTATATTCTACGACCTAAAT+TGG | + | chr2.1:578331-578350 | None:intergenic | 25.0% |
| !! | AATTCAAATCCTCTTTTTGA+AGG | - | chr2.1:577582-577601 | MS.gene90381:CDS | 25.0% |
| !! | AATTCGAATCCTTTTTCTAA+AGG | - | chr2.1:577548-577567 | MS.gene90381:CDS | 25.0% |
| !! | ATATTTAGTTTCAAGCATTG+CGG | - | chr2.1:580338-580357 | MS.gene90381:intron | 25.0% |
| !! | ATTCAAATCCTCTTTTTGAA+GGG | - | chr2.1:577583-577602 | MS.gene90381:CDS | 25.0% |
| !! | ATTCGAATCCTTTTTCTAAA+GGG | - | chr2.1:577549-577568 | MS.gene90381:CDS | 25.0% |
| !! | TATACCACTATAGCATTTTA+GGG | - | chr2.1:577871-577890 | MS.gene90381:CDS | 25.0% |
| !! | TCTATTCTTCATTTTAGACT+AGG | + | chr2.1:579465-579484 | None:intergenic | 25.0% |
| !! | TTTAGGGTGTAACTATAATT+AGG | + | chr2.1:579565-579584 | None:intergenic | 25.0% |
| !!! | AATTTAATTTTACCATGACC+TGG | + | chr2.1:579001-579020 | None:intergenic | 25.0% |
| !!! | AGAGATTATTTTTTCCTTCA+GGG | + | chr2.1:578234-578253 | None:intergenic | 25.0% |
| !!! | CCTTAAATCCTTTTTTTGAA+GGG | - | chr2.1:577515-577534 | MS.gene90381:intron | 25.0% |
| !!! | GTTTTATTGCTATGTACTTT+AGG | - | chr2.1:577735-577754 | MS.gene90381:CDS | 25.0% |
| !!! | TAGAGATTATTTTTTCCTTC+AGG | + | chr2.1:578235-578254 | None:intergenic | 25.0% |
| !!! | TCCTTAAATCCTTTTTTTGA+AGG | - | chr2.1:577514-577533 | MS.gene90381:intron | 25.0% |
| !!! | TGTTTTTTGGGATCTAATTT+AGG | + | chr2.1:578286-578305 | None:intergenic | 25.0% |
| AAAATGCTATAGTGGTATAG+CGG | + | chr2.1:577870-577889 | None:intergenic | 30.0% | |
| AACAGTAAAATGGTAGATTG+TGG | + | chr2.1:578390-578409 | None:intergenic | 30.0% | |
| AAGTTTATGGAAAAGCTACA+CGG | + | chr2.1:578633-578652 | None:intergenic | 30.0% | |
| ATACCTCTAGCAAAACTATA+GGG | - | chr2.1:577942-577961 | MS.gene90381:intron | 30.0% | |
| ATTCAACAACTTATGGACAT+GGG | - | chr2.1:579772-579791 | MS.gene90381:intron | 30.0% | |
| CATTTACACCCTTCAAAAAA+AGG | + | chr2.1:577526-577545 | None:intergenic | 30.0% | |
| CCCTTCAAAAAAAGGATTTA+AGG | + | chr2.1:577518-577537 | None:intergenic | 30.0% | |
| CTGCAAATAGAACAGTAAAA+TGG | + | chr2.1:578400-578419 | None:intergenic | 30.0% | |
| GAAACTTGAGTTAGTATGTA+GGG | + | chr2.1:579543-579562 | None:intergenic | 30.0% | |
| GTTAAACAACTTATAAGTGG+AGG | + | chr2.1:577133-577152 | None:intergenic | 30.0% | |
| TATTCAACAACTTATGGACA+TGG | - | chr2.1:579771-579790 | MS.gene90381:intron | 30.0% | |
| TCTCTCTCTCAAAACTATAA+GGG | - | chr2.1:578963-578982 | MS.gene90381:intron | 30.0% | |
| TGTGTGTATCTCTTTCTAAA+TGG | - | chr2.1:580848-580867 | MS.gene90381:intron | 30.0% | |
| TGTTTCTTTATCTCTCCAAA+TGG | + | chr2.1:580764-580783 | None:intergenic | 30.0% | |
| TTCTCTCTCTCAAAACTATA+AGG | - | chr2.1:578962-578981 | MS.gene90381:intron | 30.0% | |
| ! | AATTTGTTTATTGCAGCAAG+AGG | + | chr2.1:579615-579634 | None:intergenic | 30.0% |
| ! | ACAAGACTTGTTCAAGTATA+AGG | + | chr2.1:579397-579416 | None:intergenic | 30.0% |
| ! | AGTGTTACTACAGATACTTA+TGG | - | chr2.1:579703-579722 | MS.gene90381:intron | 30.0% |
| ! | ATACCACTATAGCATTTTAG+GGG | - | chr2.1:577872-577891 | MS.gene90381:CDS | 30.0% |
| ! | ATCATCTAATACCTGTCTTT+TGG | - | chr2.1:580417-580436 | MS.gene90381:intron | 30.0% |
| ! | ATGTAGATTTTGTCTGATGA+AGG | - | chr2.1:578811-578830 | MS.gene90381:intron | 30.0% |
| ! | ATTTTCTCAGCCTAAAGTTT+GGG | + | chr2.1:579442-579461 | None:intergenic | 30.0% |
| ! | CATTTACACCCTTTAGAAAA+AGG | + | chr2.1:577560-577579 | None:intergenic | 30.0% |
| ! | CTATACCACTATAGCATTTT+AGG | - | chr2.1:577870-577889 | MS.gene90381:CDS | 30.0% |
| ! | TATACTTGAACAAGTCTTGT+AGG | - | chr2.1:579397-579416 | MS.gene90381:CDS | 30.0% |
| ! | TTCTCAACAGATTAGGTTTT+AGG | - | chr2.1:577993-578012 | MS.gene90381:intron | 30.0% |
| !! | TAGAGATAATTTTGATCAGG+CGG | - | chr2.1:581054-581073 | MS.gene90381:intron | 30.0% |
| !!! | CATTTTTTTGCAAAGGCATA+AGG | + | chr2.1:581201-581220 | None:intergenic | 30.0% |
| !!! | TTTTGAGTTGAAACTCTTTC+AGG | - | chr2.1:580184-580203 | MS.gene90381:intron | 30.0% |
| AAACTATCACAGACCATACA+TGG | + | chr2.1:580608-580627 | None:intergenic | 35.0% | |
| AACATACATACCGAATCAGA+AGG | + | chr2.1:576780-576799 | None:intergenic | 35.0% | |
| AACTACTTACTGGAAAATGC+TGG | - | chr2.1:581347-581366 | MS.gene90381:CDS | 35.0% | |
| AATGAAGTTGTACACAAGTC+TGG | + | chr2.1:579184-579203 | None:intergenic | 35.0% | |
| ACCTGTGGAAACATATTCAA+GGG | + | chr2.1:580086-580105 | None:intergenic | 35.0% | |
| ACTACTTACTGGAAAATGCT+GGG | - | chr2.1:581348-581367 | MS.gene90381:CDS | 35.0% | |
| AGACAAAAGCCATACTTTGT+AGG | + | chr2.1:578729-578748 | None:intergenic | 35.0% | |
| AGTATACTGCTTTCCATGTA+TGG | - | chr2.1:580592-580611 | MS.gene90381:intron | 35.0% | |
| ATACACCGAAATCCTAATAG+CGG | + | chr2.1:577491-577510 | None:intergenic | 35.0% | |
| ATGAAACAAAATGCCTACCT+GGG | + | chr2.1:580267-580286 | None:intergenic | 35.0% | |
| ATTTGTACAACCCCAACTTA+GGG | + | chr2.1:579104-579123 | None:intergenic | 35.0% | |
| CAAACAAATGACCAAAAGAC+AGG | + | chr2.1:580431-580450 | None:intergenic | 35.0% | |
| CATTAACACCCTTCAAAAAG+AGG | + | chr2.1:577594-577613 | None:intergenic | 35.0% | |
| CTGTTTCAGTTGGATTACTT+GGG | + | chr2.1:580019-580038 | None:intergenic | 35.0% | |
| GAATCAACAATGAGCAGTTT+AGG | + | chr2.1:579891-579910 | None:intergenic | 35.0% | |
| GAGTTAGTATGTAGGGATTT+AGG | + | chr2.1:579536-579555 | None:intergenic | 35.0% | |
| GATACCTCTAGCAAAACTAT+AGG | - | chr2.1:577941-577960 | MS.gene90381:intron | 35.0% | |
| GATGAACTCTGATTTCGAAA+TGG | + | chr2.1:576758-576777 | None:intergenic | 35.0% | |
| GCAGACTATTCAACAACTTA+TGG | - | chr2.1:579765-579784 | MS.gene90381:intron | 35.0% | |
| GCCGTTAAACAACTTATAAG+TGG | + | chr2.1:577136-577155 | None:intergenic | 35.0% | |
| GGAAAAGATAATTACCCATG+CGG | - | chr2.1:576925-576944 | MS.gene90381:intron | 35.0% | |
| GGAAACTTGAGTTAGTATGT+AGG | + | chr2.1:579544-579563 | None:intergenic | 35.0% | |
| GGCAAAAGATGTAAATGACA+AGG | + | chr2.1:580148-580167 | None:intergenic | 35.0% | |
| GTAGGAATGGAGATCTAAAA+TGG | + | chr2.1:580742-580761 | None:intergenic | 35.0% | |
| GTTGTAATTTGAATTTGGCC+TGG | - | chr2.1:578888-578907 | MS.gene90381:intron | 35.0% | |
| TACCTGTGGAAACATATTCA+AGG | + | chr2.1:580087-580106 | None:intergenic | 35.0% | |
| TACTACAGATACTTATGGAC+AGG | - | chr2.1:579708-579727 | MS.gene90381:intron | 35.0% | |
| TATTTGCAGAGTAAAGCCTT+GGG | - | chr2.1:578411-578430 | MS.gene90381:intron | 35.0% | |
| TCAGATCACAGAAAATCATC+AGG | + | chr2.1:579031-579050 | None:intergenic | 35.0% | |
| TCTTTATCTCTCCAAATGGT+AGG | + | chr2.1:580760-580779 | None:intergenic | 35.0% | |
| TGTAGAGTTCTCAACAGATT+AGG | - | chr2.1:577986-578005 | MS.gene90381:intron | 35.0% | |
| TTACCTTCATGTCACAAACA+TGG | + | chr2.1:580922-580941 | None:intergenic | 35.0% | |
| TTAGATACCTGGAGAATTTG+TGG | + | chr2.1:580382-580401 | None:intergenic | 35.0% | |
| TTGATAAATGAACCCATGGA+CGG | - | chr2.1:580557-580576 | MS.gene90381:intron | 35.0% | |
| TTGTGAGTAACCCAAACTTT+AGG | - | chr2.1:579429-579448 | MS.gene90381:intron | 35.0% | |
| ! | AAAGTTTGGGTTACTCACAA+TGG | + | chr2.1:579429-579448 | None:intergenic | 35.0% |
| ! | AATGGAGATCTAAAATGGAG+AGG | + | chr2.1:580737-580756 | None:intergenic | 35.0% |
| ! | AGCATTTTCCAGTAAGTAGT+TGG | + | chr2.1:581348-581367 | None:intergenic | 35.0% |
| ! | CTTTTGTCTCTATGTTTCTC+TGG | - | chr2.1:578740-578759 | MS.gene90381:intron | 35.0% |
| ! | GACAATAAAGTCTCTGAAGA+TGG | - | chr2.1:577003-577022 | MS.gene90381:CDS | 35.0% |
| ! | GATTTTCTCAGCCTAAAGTT+TGG | + | chr2.1:579443-579462 | None:intergenic | 35.0% |
| ! | GGGGTTGTACAAATGTTTTT+GGG | - | chr2.1:579110-579129 | MS.gene90381:intron | 35.0% |
| ! | GTAGGGATTTAGGTTTACTT+AGG | + | chr2.1:579526-579545 | None:intergenic | 35.0% |
| ! | TCACAGTGAAGACTTTGAAA+GGG | - | chr2.1:576730-576749 | MS.gene90381:CDS | 35.0% |
| ! | TCTTGTTGTCATGCTTAGTA+AGG | - | chr2.1:577029-577048 | MS.gene90381:CDS | 35.0% |
| ! | TGGGGTTGTACAAATGTTTT+TGG | - | chr2.1:579109-579128 | MS.gene90381:intron | 35.0% |
| !! | AGTTATAGGTGGATTGCTAA+CGG | + | chr2.1:578550-578569 | None:intergenic | 35.0% |
| !! | CAACAATTGCTGATTCACAA+TGG | - | chr2.1:576949-576968 | MS.gene90381:intron | 35.0% |
| !! | TCAGTTGATAAATGAACCCA+TGG | - | chr2.1:580553-580572 | MS.gene90381:intron | 35.0% |
| !!! | TTGTACAAATGTTTTTGGGC+TGG | - | chr2.1:579114-579133 | MS.gene90381:intron | 35.0% |
| !!! | TTTTGCTAGAGGTATCTTGT+AGG | + | chr2.1:577937-577956 | None:intergenic | 35.0% |
| AAACATGGCAAAGACGAGTT+AGG | + | chr2.1:580907-580926 | None:intergenic | 40.0% | |
| ACTCACTGAGTCTATACTAC+AGG | + | chr2.1:578594-578613 | None:intergenic | 40.0% | |
| AGAATCCTAATCGAACCACA+GGG | - | chr2.1:579482-579501 | MS.gene90381:intron | 40.0% | |
| AGATCTCCATTCCTACCATT+TGG | - | chr2.1:580746-580765 | MS.gene90381:intron | 40.0% | |
| AGTAATCCAACTGAAACAGG+TGG | - | chr2.1:580020-580039 | MS.gene90381:intron | 40.0% | |
| ATATTCAAGGGAGACGAGTT+AGG | + | chr2.1:580074-580093 | None:intergenic | 40.0% | |
| ATCCAATCCACAAATTCTCC+AGG | - | chr2.1:580372-580391 | MS.gene90381:intron | 40.0% | |
| ATCTCTCCAAATGGTAGGAA+TGG | + | chr2.1:580755-580774 | None:intergenic | 40.0% | |
| ATTTCAGAAGGTTTGACGAC+AGG | + | chr2.1:579662-579681 | None:intergenic | 40.0% | |
| CAAAAATGCCTCTATGACAG+AGG | + | chr2.1:581297-581316 | None:intergenic | 40.0% | |
| CAGAGTTCATCCTTCTGATT+CGG | - | chr2.1:576767-576786 | MS.gene90381:CDS | 40.0% | |
| CAGTCACTAACTCATACAAG+AGG | + | chr2.1:578512-578531 | None:intergenic | 40.0% | |
| CATTTGTACAACCCCAACTT+AGG | + | chr2.1:579105-579124 | None:intergenic | 40.0% | |
| CCAAGTAATCCAACTGAAAC+AGG | - | chr2.1:580017-580036 | MS.gene90381:intron | 40.0% | |
| CCTGTTTCAGTTGGATTACT+TGG | + | chr2.1:580020-580039 | None:intergenic | 40.0% | |
| CTACTTACTGGAAAATGCTG+GGG | - | chr2.1:581349-581368 | MS.gene90381:CDS | 40.0% | |
| CTATTTGCAGAGTAAAGCCT+TGG | - | chr2.1:578410-578429 | MS.gene90381:intron | 40.0% | |
| CTCACAGTGAAGACTTTGAA+AGG | - | chr2.1:576729-576748 | MS.gene90381:CDS | 40.0% | |
| CTCTTTCAGGAGACAATTTC+TGG | - | chr2.1:580197-580216 | MS.gene90381:intron | 40.0% | |
| GATGAAACAAAATGCCTACC+TGG | + | chr2.1:580268-580287 | None:intergenic | 40.0% | |
| GCTGCTTCAAATTTAGTTGC+TGG | - | chr2.1:579730-579749 | MS.gene90381:intron | 40.0% | |
| GGTTAATCTTAGCACGTACT+CGG | + | chr2.1:578196-578215 | None:intergenic | 40.0% | |
| GTAATCCAACTGAAACAGGT+GGG | - | chr2.1:580021-580040 | MS.gene90381:intron | 40.0% | |
| TAAATGCTACAGATGCTTCC+TGG | + | chr2.1:580971-580990 | None:intergenic | 40.0% | |
| TAATCCAACTGAAACAGGTG+GGG | - | chr2.1:580022-580041 | MS.gene90381:intron | 40.0% | |
| TACCTGGAGAATTTGTGGAT+TGG | + | chr2.1:580377-580396 | None:intergenic | 40.0% | |
| TAGAATCCTAATCGAACCAC+AGG | - | chr2.1:579481-579500 | MS.gene90381:intron | 40.0% | |
| TATACTACAGGTGTGGAATC+TGG | + | chr2.1:578582-578601 | None:intergenic | 40.0% | |
| TATTCAAGGGAGACGAGTTA+GGG | + | chr2.1:580073-580092 | None:intergenic | 40.0% | |
| TCAATAAGTCTCAAGAGACC+TGG | + | chr2.1:580512-580531 | None:intergenic | 40.0% | |
| TCAGGGACTTTATACTCTTC+TGG | + | chr2.1:578217-578236 | None:intergenic | 40.0% | |
| TCCCTTGAATATGTTTCCAC+AGG | - | chr2.1:580082-580101 | MS.gene90381:intron | 40.0% | |
| TGAAACAAAATGCCTACCTG+GGG | + | chr2.1:580266-580285 | None:intergenic | 40.0% | |
| TTCTGCTAGAGTGACACTAT+TGG | + | chr2.1:577375-577394 | None:intergenic | 40.0% | |
| TTGCCATGTTTGTGACATGA+AGG | - | chr2.1:580916-580935 | MS.gene90381:intron | 40.0% | |
| TTTACCATGACCTGGTCTAT+TGG | + | chr2.1:578993-579012 | None:intergenic | 40.0% | |
| ! | AGATAGAACTAGCCTGCATT+TGG | - | chr2.1:578110-578129 | MS.gene90381:CDS | 40.0% |
| ! | CGTACTCGGAAATCTTGTTT+AGG | + | chr2.1:578182-578201 | None:intergenic | 40.0% |
| ! | GAAGAGTATAAAGTCCCTGA+AGG | - | chr2.1:578217-578236 | MS.gene90381:intron | 40.0% |
| ! | GGCTGAATTTTGCACTATCA+GGG | - | chr2.1:577104-577123 | MS.gene90381:intron | 40.0% |
| ! | TGTTTCGTTCAAAGCTCTGA+AGG | - | chr2.1:579059-579078 | MS.gene90381:intron | 40.0% |
| !! | AATGCAGGCTAGTTCTATCT+TGG | + | chr2.1:578110-578129 | None:intergenic | 40.0% |
| !! | CTACCCTATAGTTTTGCTAG+AGG | + | chr2.1:577948-577967 | None:intergenic | 40.0% |
| !! | GTTTCGTTCAAAGCTCTGAA+GGG | - | chr2.1:579060-579079 | MS.gene90381:intron | 40.0% |
| !! | TATAGTGGTATAGCGGATAG+CGG | + | chr2.1:577863-577882 | None:intergenic | 40.0% |
| !!! | AGGGTGACGTAGTGTTTTTT+GGG | + | chr2.1:578298-578317 | None:intergenic | 40.0% |
| !!! | CTCTGTCATAGAGGCATTTT+TGG | - | chr2.1:581295-581314 | MS.gene90381:intron | 40.0% |
| !!! | GGTAATGTTTTGACCTGTTG+TGG | - | chr2.1:580937-580956 | MS.gene90381:intron | 40.0% |
| AACTTAGGGTTGGGCAGAAT+TGG | + | chr2.1:579090-579109 | None:intergenic | 45.0% | |
| AAGCAACATGTGAGAGAAGC+GGG | + | chr2.1:578138-578157 | None:intergenic | 45.0% | |
| AAGGTTTGACGACAGGATAG+AGG | + | chr2.1:579655-579674 | None:intergenic | 45.0% | |
| AAGTAATCTACAGCACGCTC+TGG | + | chr2.1:579856-579875 | None:intergenic | 45.0% | |
| AATTCTGCCCAACCCTAAGT+TGG | - | chr2.1:579089-579108 | MS.gene90381:intron | 45.0% | |
| AGCAGCAGAAATTGCTGTAC+CGG | - | chr2.1:579983-580002 | MS.gene90381:intron | 45.0% | |
| AGTGATGTCTGAATGCAGTC+AGG | + | chr2.1:579210-579229 | None:intergenic | 45.0% | |
| ATCAGCAATTGTTGTCCGCA+TGG | + | chr2.1:576943-576962 | None:intergenic | 45.0% | |
| ATCTAGTACAGCATTCCCTG+TGG | + | chr2.1:579500-579519 | None:intergenic | 45.0% | |
| ATGTGACCGTGATGAGCAAT+TGG | - | chr2.1:581319-581338 | MS.gene90381:intron | 45.0% | |
| ATTCTGCCCAACCCTAAGTT+GGG | - | chr2.1:579090-579109 | MS.gene90381:intron | 45.0% | |
| ATTGGCAGCCAACTACTTAC+TGG | - | chr2.1:581337-581356 | MS.gene90381:CDS | 45.0% | |
| CAACAACTTATGGACATGGG+TGG | - | chr2.1:579775-579794 | MS.gene90381:intron | 45.0% | |
| CCTGTTGTGGTATCTAATCC+AGG | - | chr2.1:580950-580969 | MS.gene90381:intron | 45.0% | |
| CGACAGAGGAATAGAGTGAA+AGG | + | chr2.1:577158-577177 | None:intergenic | 45.0% | |
| CTGAGTCTATACTACAGGTG+TGG | + | chr2.1:578589-578608 | None:intergenic | 45.0% | |
| CTGTCTCATTGCCATGAGAA+AGG | - | chr2.1:579158-579177 | MS.gene90381:intron | 45.0% | |
| GAAGCAACATGTGAGAGAAG+CGG | + | chr2.1:578139-578158 | None:intergenic | 45.0% | |
| GACGACAGGATAGAGGTAAA+TGG | + | chr2.1:579648-579667 | None:intergenic | 45.0% | |
| GAGCCCCTAAAATGCTATAG+TGG | + | chr2.1:577878-577897 | None:intergenic | 45.0% | |
| GTGATGAATGTTGTCGACAG+AGG | + | chr2.1:577172-577191 | None:intergenic | 45.0% | |
| GTGATGTCTGAATGCAGTCA+GGG | + | chr2.1:579209-579228 | None:intergenic | 45.0% | |
| GTTGTGGCACCTACAAAGTA+TGG | - | chr2.1:578717-578736 | MS.gene90381:intron | 45.0% | |
| TACAACCCCAACTTAGGGTT+GGG | + | chr2.1:579099-579118 | None:intergenic | 45.0% | |
| TACCTATGACATGCAGCTAG+AGG | - | chr2.1:581253-581272 | MS.gene90381:intron | 45.0% | |
| TCAGCAATTGTTGTCCGCAT+GGG | + | chr2.1:576942-576961 | None:intergenic | 45.0% | |
| TCGAAAAAGAGCTGTAGCGA+TGG | - | chr2.1:577255-577274 | MS.gene90381:intron | 45.0% | |
| TCTATTGCAGCCTGTACTTC+AGG | - | chr2.1:580469-580488 | MS.gene90381:intron | 45.0% | |
| TGATAGAGCCTCTGTCATAG+AGG | - | chr2.1:581286-581305 | MS.gene90381:intron | 45.0% | |
| TGCTGGAACTTCATCTACTC+AGG | - | chr2.1:578437-578456 | MS.gene90381:intron | 45.0% | |
| TGTGTGAGCAAGAACACAAC+AGG | + | chr2.1:577657-577676 | None:intergenic | 45.0% | |
| ! | ACAGCAATTTCTGCTGCTTC+AGG | + | chr2.1:579981-580000 | None:intergenic | 45.0% |
| ! | CCTGGATTAGATACCACAAC+AGG | + | chr2.1:580953-580972 | None:intergenic | 45.0% |
| ! | GGAAAATGCTGGGGATTTTG+AGG | - | chr2.1:581358-581377 | MS.gene90381:CDS | 45.0% |
| ! | GGGCTGAATTTTGCACTATC+AGG | - | chr2.1:577103-577122 | MS.gene90381:intron | 45.0% |
| ! | GTTTCAAGCATTGCGGACAA+TGG | - | chr2.1:580345-580364 | MS.gene90381:intron | 45.0% |
| !! | TCTGGTGTTGGCACAGTTAT+AGG | + | chr2.1:578564-578583 | None:intergenic | 45.0% |
| !! | TTACTTGGGTATTGAGCAGC+CGG | + | chr2.1:580005-580024 | None:intergenic | 45.0% |
| !!! | GAGGGTGACGTAGTGTTTTT+TGG | + | chr2.1:578299-578318 | None:intergenic | 45.0% |
| !!! | TTCTATTATAAATAATTTTT+CGG | - | chr2.1:580678-580697 | MS.gene90381:intron | 5.0% |
| ACAACCGGTATTGCTGACAG+CGG | + | chr2.1:577444-577463 | None:intergenic | 50.0% | |
| ACAGGTGTGGAATCTGGTGT+TGG | + | chr2.1:578576-578595 | None:intergenic | 50.0% | |
| AGCCTCTAGCTGCATGTCAT+AGG | + | chr2.1:581258-581277 | None:intergenic | 50.0% | |
| AGTAAAGCCTTGGGATCTGC+TGG | - | chr2.1:578420-578439 | MS.gene90381:intron | 50.0% | |
| ATGTGGGTCCTACCAACAAG+TGG | + | chr2.1:580820-580839 | None:intergenic | 50.0% | |
| CAAACCGCTGTCAGCAATAC+CGG | - | chr2.1:577437-577456 | MS.gene90381:intron | 50.0% | |
| CAACTTATGGACATGGGTGG+TGG | - | chr2.1:579778-579797 | MS.gene90381:intron | 50.0% | |
| CAAGCCAATAGACCAGGTCA+TGG | - | chr2.1:578986-579005 | MS.gene90381:intron | 50.0% | |
| CGCGTCCGCTATTAGGATTT+CGG | - | chr2.1:577483-577502 | MS.gene90381:intron | 50.0% | |
| CTAAATTGGCCCCAGAGAGA+GGG | + | chr2.1:578317-578336 | None:intergenic | 50.0% | |
| CTAGCAGAATAGTGTAGCCG+TGG | - | chr2.1:577386-577405 | MS.gene90381:intron | 50.0% | |
| CTTCTTGAGGAACAATCCCC+AGG | - | chr2.1:580247-580266 | MS.gene90381:intron | 50.0% | |
| GACATGCAGCTAGAGGCTAT+GGG | - | chr2.1:581260-581279 | MS.gene90381:intron | 50.0% | |
| GAGCTCGGAAAGCAAAATCC+AGG | - | chr2.1:580491-580510 | MS.gene90381:intron | 50.0% | |
| GCATTCCCTGTGGTTCGATT+AGG | + | chr2.1:579490-579509 | None:intergenic | 50.0% | |
| GGCGTCACATTAACAGCATG+AGG | + | chr2.1:581091-581110 | None:intergenic | 50.0% | |
| GTACAACCCCAACTTAGGGT+TGG | + | chr2.1:579100-579119 | None:intergenic | 50.0% | |
| TAAGGGCAAGCCAATAGACC+AGG | - | chr2.1:578980-578999 | MS.gene90381:intron | 50.0% | |
| TAATCCCAGACAGTGTCACG+TGG | + | chr2.1:577905-577924 | None:intergenic | 50.0% | |
| TATTGCTGACAGCGGTTTGC+AGG | + | chr2.1:577436-577455 | None:intergenic | 50.0% | |
| TCACTACCGGAGTTGTTCCT+GGG | - | chr2.1:580045-580064 | MS.gene90381:intron | 50.0% | |
| TGAAGTTCCAGCAGATCCCA+AGG | + | chr2.1:578430-578449 | None:intergenic | 50.0% | |
| TGACATGCAGCTAGAGGCTA+TGG | - | chr2.1:581259-581278 | MS.gene90381:intron | 50.0% | |
| TGATGTTGGGACCCACTTGT+TGG | - | chr2.1:580805-580824 | MS.gene90381:intron | 50.0% | |
| TGGCTGCCAATTGCTCATCA+CGG | + | chr2.1:581328-581347 | None:intergenic | 50.0% | |
| TGTGGGTCCTACCAACAAGT+GGG | + | chr2.1:580819-580838 | None:intergenic | 50.0% | |
| TTCTGCCCAACCCTAAGTTG+GGG | - | chr2.1:579091-579110 | MS.gene90381:intron | 50.0% | |
| TTGAGGAACAATCCCCAGGT+AGG | - | chr2.1:580251-580270 | MS.gene90381:intron | 50.0% | |
| TTTCCGAGCTCCTGAAGTAC+AGG | + | chr2.1:580482-580501 | None:intergenic | 50.0% | |
| ! | AACCCATGGACGGTACTGAA+GGG | - | chr2.1:580567-580586 | MS.gene90381:intron | 50.0% |
| ! | AGCACGAAGAGCACGATTGA+CGG | + | chr2.1:579821-579840 | None:intergenic | 50.0% |
| ! | CACAAGTCTGGCCTTTCTCA+TGG | + | chr2.1:579172-579191 | None:intergenic | 50.0% |
| ! | CTGGTTCGCTTGACTTCTTG+AGG | - | chr2.1:580234-580253 | MS.gene90381:intron | 50.0% |
| ! | GTCAGCAATACCGGTTGTTG+CGG | - | chr2.1:577446-577465 | MS.gene90381:intron | 50.0% |
| ! | TTTGTAGGTGCCACAACTGC+AGG | + | chr2.1:578714-578733 | None:intergenic | 50.0% |
| !! | ACAATTTCTGGTGCTGGAGC+TGG | - | chr2.1:580209-580228 | MS.gene90381:intron | 50.0% |
| !! | ATCCTAATAGCGGACGCGAT+AGG | + | chr2.1:577481-577500 | None:intergenic | 50.0% |
| !! | CAGGAGACAATTTCTGGTGC+TGG | - | chr2.1:580203-580222 | MS.gene90381:intron | 50.0% |
| !! | CGTTCAAAGCTCTGAAGGGA+AGG | - | chr2.1:579064-579083 | MS.gene90381:intron | 50.0% |
| !! | GGTGTTGGCACAGTTATAGG+TGG | + | chr2.1:578561-578580 | None:intergenic | 50.0% |
| !! | TCCTAATAGCGGACGCGATA+GGG | + | chr2.1:577480-577499 | None:intergenic | 50.0% |
| !!! | GGAGTTTGGTGCAACGCTTT+TGG | - | chr2.1:577410-577429 | MS.gene90381:intron | 50.0% |
| ACACTACGTCACCCTCTCTC+TGG | - | chr2.1:578303-578322 | MS.gene90381:CDS | 55.0% | |
| ACTACGTCACCCTCTCTCTG+GGG | - | chr2.1:578305-578324 | MS.gene90381:CDS | 55.0% | |
| AGCACCACGTGACACTGTCT+GGG | - | chr2.1:577898-577917 | MS.gene90381:intron | 55.0% | |
| CAACGCATCTCCTGCAGTTG+TGG | - | chr2.1:578701-578720 | MS.gene90381:intron | 55.0% | |
| CACCCTTCAGTACCGTCCAT+GGG | + | chr2.1:580572-580591 | None:intergenic | 55.0% | |
| CACTACCGGAGTTGTTCCTG+GGG | - | chr2.1:580046-580065 | MS.gene90381:intron | 55.0% | |
| CACTACGTCACCCTCTCTCT+GGG | - | chr2.1:578304-578323 | MS.gene90381:CDS | 55.0% | |
| CAGCCTGTACTTCAGGAGCT+CGG | - | chr2.1:580476-580495 | MS.gene90381:intron | 55.0% | |
| CCTAAATTGGCCCCAGAGAG+AGG | + | chr2.1:578318-578337 | None:intergenic | 55.0% | |
| CGTTGCACCAAACTCCACCA+CGG | + | chr2.1:577406-577425 | None:intergenic | 55.0% | |
| GAAACAGGTGGGGTCACTAC+CGG | - | chr2.1:580032-580051 | MS.gene90381:intron | 55.0% | |
| GCAGAATAGTGTAGCCGTGG+TGG | - | chr2.1:577389-577408 | MS.gene90381:intron | 55.0% | |
| GTCACTACCGGAGTTGTTCC+TGG | - | chr2.1:580044-580063 | MS.gene90381:intron | 55.0% | |
| GTGACCCCACCTGTTTCAGT+TGG | + | chr2.1:580029-580048 | None:intergenic | 55.0% | |
| TAATGTGACGCCAGCTGAGC+AGG | - | chr2.1:581099-581118 | MS.gene90381:CDS | 55.0% | |
| TCACCCTTCAGTACCGTCCA+TGG | + | chr2.1:580573-580592 | None:intergenic | 55.0% | |
| TGAGCAGGAGGCAATCGGAA+GGG | - | chr2.1:581114-581133 | MS.gene90381:CDS | 55.0% | |
| ! | AGTGTAGCCGTGGTGGAGTT+TGG | - | chr2.1:577396-577415 | MS.gene90381:intron | 55.0% |
| ! | GAACCCATGGACGGTACTGA+AGG | - | chr2.1:580566-580585 | MS.gene90381:intron | 55.0% |
| ! | GTTGGGACCCACTTGTTGGT+AGG | - | chr2.1:580809-580828 | MS.gene90381:intron | 55.0% |
| !! | CCTCTCTCTGGGGCCAATTT+AGG | - | chr2.1:578315-578334 | MS.gene90381:CDS | 55.0% |
| AGGGACCCCAGGAACAACTC+CGG | + | chr2.1:580054-580073 | None:intergenic | 60.0% | |
| CAGCACCACGTGACACTGTC+TGG | - | chr2.1:577897-577916 | MS.gene90381:intron | 60.0% | |
| CCAGCTGAGCAGGAGGCAAT+CGG | - | chr2.1:581109-581128 | MS.gene90381:CDS | 60.0% | |
| CTGAGCAGGAGGCAATCGGA+AGG | - | chr2.1:581113-581132 | MS.gene90381:CDS | 60.0% | |
| GCCCTATCGCGTCCGCTATT+AGG | - | chr2.1:577476-577495 | MS.gene90381:intron | 60.0% | |
| GGCATTAGGGCCGCAACAAC+CGG | + | chr2.1:577459-577478 | None:intergenic | 60.0% | |
| ! | AGCGGACGCGATAGGGCATT+AGG | + | chr2.1:577473-577492 | None:intergenic | 60.0% |
| ! | GAGAAGCGGGCTCCAAATGC+AGG | + | chr2.1:578125-578144 | None:intergenic | 60.0% |
| ! | GCGGACGCGATAGGGCATTA+GGG | + | chr2.1:577472-577491 | None:intergenic | 60.0% |
| CCGATTGCCTCCTGCTCAGC+TGG | + | chr2.1:581112-581131 | None:intergenic | 65.0% | |
| GGAGACGAGTTAGGGACCCC+AGG | + | chr2.1:580065-580084 | None:intergenic | 65.0% | |
| TGTGACGCCAGCTGAGCAGG+AGG | - | chr2.1:581102-581121 | MS.gene90381:CDS | 65.0% | |
| ! | GGACATGGGTGGTGGCAGCT+GGG | - | chr2.1:579786-579805 | MS.gene90381:intron | 65.0% |
| ! | TCTGGTGCTGGAGCTGGAGC+TGG | - | chr2.1:580215-580234 | MS.gene90381:intron | 65.0% |
| ! | TGGACATGGGTGGTGGCAGC+TGG | - | chr2.1:579785-579804 | MS.gene90381:intron | 65.0% |
| ! | GGGTGGTGGCAGCTGGGACA+GGG | - | chr2.1:579792-579811 | MS.gene90381:intron | 70.0% |
| ! | TGGGTGGTGGCAGCTGGGAC+AGG | - | chr2.1:579791-579810 | MS.gene90381:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.1 | gene | 576723 | 581385 | 576723 | ID=MS.gene90381 |
| chr2.1 | mRNA | 576723 | 581385 | 576723 | ID=MS.gene90381.t1;Parent=MS.gene90381 |
| chr2.1 | exon | 581320 | 581385 | 581320 | ID=MS.gene90381.t1.exon1;Parent=MS.gene90381.t1 |
| chr2.1 | CDS | 581320 | 581385 | 581320 | ID=cds.MS.gene90381.t1;Parent=MS.gene90381.t1 |
| chr2.1 | exon | 581058 | 581219 | 581058 | ID=MS.gene90381.t1.exon2;Parent=MS.gene90381.t1 |
| chr2.1 | CDS | 581058 | 581219 | 581058 | ID=cds.MS.gene90381.t1;Parent=MS.gene90381.t1 |
| chr2.1 | exon | 579639 | 579688 | 579639 | ID=MS.gene90381.t1.exon3;Parent=MS.gene90381.t1 |
| chr2.1 | CDS | 579639 | 579688 | 579639 | ID=cds.MS.gene90381.t1;Parent=MS.gene90381.t1 |
| chr2.1 | exon | 579375 | 579419 | 579375 | ID=MS.gene90381.t1.exon4;Parent=MS.gene90381.t1 |
| chr2.1 | CDS | 579375 | 579419 | 579375 | ID=cds.MS.gene90381.t1;Parent=MS.gene90381.t1 |
| chr2.1 | exon | 578226 | 578403 | 578226 | ID=MS.gene90381.t1.exon5;Parent=MS.gene90381.t1 |
| chr2.1 | CDS | 578226 | 578403 | 578226 | ID=cds.MS.gene90381.t1;Parent=MS.gene90381.t1 |
| chr2.1 | exon | 578005 | 578136 | 578005 | ID=MS.gene90381.t1.exon6;Parent=MS.gene90381.t1 |
| chr2.1 | CDS | 578005 | 578136 | 578005 | ID=cds.MS.gene90381.t1;Parent=MS.gene90381.t1 |
| chr2.1 | exon | 577840 | 577902 | 577840 | ID=MS.gene90381.t1.exon7;Parent=MS.gene90381.t1 |
| chr2.1 | CDS | 577840 | 577902 | 577840 | ID=cds.MS.gene90381.t1;Parent=MS.gene90381.t1 |
| chr2.1 | exon | 577715 | 577762 | 577715 | ID=MS.gene90381.t1.exon8;Parent=MS.gene90381.t1 |
| chr2.1 | CDS | 577715 | 577762 | 577715 | ID=cds.MS.gene90381.t1;Parent=MS.gene90381.t1 |
| chr2.1 | exon | 577520 | 577629 | 577520 | ID=MS.gene90381.t1.exon9;Parent=MS.gene90381.t1 |
| chr2.1 | CDS | 577520 | 577629 | 577520 | ID=cds.MS.gene90381.t1;Parent=MS.gene90381.t1 |
| chr2.1 | exon | 576973 | 577051 | 576973 | ID=MS.gene90381.t1.exon10;Parent=MS.gene90381.t1 |
| chr2.1 | CDS | 576973 | 577051 | 576973 | ID=cds.MS.gene90381.t1;Parent=MS.gene90381.t1 |
| chr2.1 | exon | 576723 | 576839 | 576723 | ID=MS.gene90381.t1.exon11;Parent=MS.gene90381.t1 |
| chr2.1 | CDS | 576723 | 576839 | 576723 | ID=cds.MS.gene90381.t1;Parent=MS.gene90381.t1 |
| Gene Sequence |
| Protein sequence |
