Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99949.t1 | XP_013465631.1 | 98.4 | 366 | 6 | 0 | 1 | 366 | 1 | 366 | 1.10E-199 | 705.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99949.t1 | Q84L33 | 67.0 | 373 | 114 | 4 | 1 | 366 | 1 | 371 | 6.9e-129 | 461.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99949.t1 | G7ZYZ1 | 98.4 | 366 | 6 | 0 | 1 | 366 | 1 | 366 | 8.2e-200 | 705.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene99949 | 0.838931 | 2.15E-57 | -1.69E-46 |
| MS.gene049227 | MS.gene99949 | 0.830001 | 3.75E-55 | -1.69E-46 |
| MS.gene049350 | MS.gene99949 | 0.838415 | 2.91E-57 | -1.69E-46 |
| MS.gene049711 | MS.gene99949 | 0.832161 | 1.11E-55 | -1.69E-46 |
| MS.gene049807 | MS.gene99949 | 0.855341 | 6.73E-62 | -1.69E-46 |
| MS.gene049887 | MS.gene99949 | 0.805123 | 1.55E-49 | -1.69E-46 |
| MS.gene051018 | MS.gene99949 | 0.834223 | 3.39E-56 | -1.69E-46 |
| MS.gene051021 | MS.gene99949 | 0.814197 | 1.74E-51 | -1.69E-46 |
| MS.gene051234 | MS.gene99949 | 0.818651 | 1.75E-52 | -1.69E-46 |
| MS.gene051247 | MS.gene99949 | 0.820949 | 5.23E-53 | -1.69E-46 |
| MS.gene051664 | MS.gene99949 | 0.814914 | 1.21E-51 | -1.69E-46 |
| MS.gene051700 | MS.gene99949 | 0.800483 | 1.41E-48 | -1.69E-46 |
| MS.gene051719 | MS.gene99949 | 0.813208 | 2.88E-51 | -1.69E-46 |
| MS.gene051720 | MS.gene99949 | 0.824781 | 6.70E-54 | -1.69E-46 |
| MS.gene051744 | MS.gene99949 | 0.810137 | 1.34E-50 | -1.69E-46 |
| MS.gene052463 | MS.gene99949 | 0.814784 | 1.29E-51 | -1.69E-46 |
| MS.gene052516 | MS.gene99949 | 0.815526 | 8.84E-52 | -1.69E-46 |
| MS.gene053122 | MS.gene99949 | 0.825531 | 4.46E-54 | -1.69E-46 |
| MS.gene053143 | MS.gene99949 | 0.814595 | 1.42E-51 | -1.69E-46 |
| MS.gene053144 | MS.gene99949 | 0.872564 | 2.89E-67 | -1.69E-46 |
| MS.gene053226 | MS.gene99949 | 0.803314 | 3.70E-49 | -1.69E-46 |
| MS.gene053536 | MS.gene99949 | 0.863678 | 2.10E-64 | -1.69E-46 |
| MS.gene053538 | MS.gene99949 | 0.870346 | 1.56E-66 | -1.69E-46 |
| MS.gene053540 | MS.gene99949 | 0.828848 | 7.16E-55 | -1.69E-46 |
| MS.gene053581 | MS.gene99949 | 0.825705 | 4.05E-54 | -1.69E-46 |
| MS.gene054584 | MS.gene99949 | 0.856366 | 3.38E-62 | -1.69E-46 |
| MS.gene055465 | MS.gene99949 | 0.837047 | 6.54E-57 | -1.69E-46 |
| MS.gene055466 | MS.gene99949 | 0.841109 | 5.80E-58 | -1.69E-46 |
| MS.gene055468 | MS.gene99949 | 0.837837 | 4.11E-57 | -1.69E-46 |
| MS.gene055469 | MS.gene99949 | 0.805754 | 1.15E-49 | -1.69E-46 |
| MS.gene055513 | MS.gene99949 | 0.814565 | 1.44E-51 | -1.69E-46 |
| MS.gene055537 | MS.gene99949 | 0.841935 | 3.51E-58 | -1.69E-46 |
| MS.gene055580 | MS.gene99949 | -0.84154 | 4.47E-58 | -1.69E-46 |
| MS.gene055764 | MS.gene99949 | 0.816626 | 5.02E-52 | -1.69E-46 |
| MS.gene056043 | MS.gene99949 | -0.82843 | 9.03E-55 | -1.69E-46 |
| MS.gene056308 | MS.gene99949 | 0.815846 | 7.50E-52 | -1.69E-46 |
| MS.gene056595 | MS.gene99949 | 0.81999 | 8.69E-53 | -1.69E-46 |
| MS.gene057102 | MS.gene99949 | 0.826689 | 2.36E-54 | -1.69E-46 |
| MS.gene057294 | MS.gene99949 | 0.82119 | 4.61E-53 | -1.69E-46 |
| MS.gene058339 | MS.gene99949 | 0.800481 | 1.41E-48 | -1.69E-46 |
| MS.gene058492 | MS.gene99949 | 0.815182 | 1.05E-51 | -1.69E-46 |
| MS.gene058649 | MS.gene99949 | 0.804384 | 2.22E-49 | -1.69E-46 |
| MS.gene058668 | MS.gene99949 | 0.842623 | 2.31E-58 | -1.69E-46 |
| MS.gene05894 | MS.gene99949 | 0.833211 | 6.07E-56 | -1.69E-46 |
| MS.gene059424 | MS.gene99949 | 0.851595 | 8.01E-61 | -1.69E-46 |
| MS.gene059425 | MS.gene99949 | 0.815777 | 7.77E-52 | -1.69E-46 |
| MS.gene059625 | MS.gene99949 | 0.814054 | 1.87E-51 | -1.69E-46 |
| MS.gene059778 | MS.gene99949 | 0.802467 | 5.53E-49 | -1.69E-46 |
| MS.gene059900 | MS.gene99949 | -0.819449 | 1.15E-52 | -1.69E-46 |
| MS.gene061100 | MS.gene99949 | 0.823972 | 1.04E-53 | -1.69E-46 |
| MS.gene061188 | MS.gene99949 | 0.809361 | 1.97E-50 | -1.69E-46 |
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99949.t1 | MTR_2g105410 | 98.361 | 366 | 6 | 0 | 1 | 366 | 1 | 366 | 0.0 | 742 |
| MS.gene99949.t1 | MTR_1g111090 | 56.818 | 396 | 141 | 6 | 1 | 366 | 1 | 396 | 2.74e-140 | 404 |
| MS.gene99949.t1 | MTR_7g407040 | 53.034 | 379 | 156 | 6 | 1 | 366 | 1 | 370 | 1.12e-121 | 356 |
| MS.gene99949.t1 | MTR_7g037380 | 83.871 | 62 | 7 | 1 | 18 | 76 | 69 | 130 | 1.77e-26 | 104 |
| MS.gene99949.t1 | MTR_7g006500 | 58.065 | 62 | 24 | 2 | 122 | 183 | 53 | 112 | 4.95e-13 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99949.t1 | AT1G79650 | 70.321 | 374 | 100 | 7 | 1 | 366 | 1 | 371 | 0.0 | 516 |
| MS.gene99949.t1 | AT1G79650 | 69.973 | 373 | 97 | 7 | 1 | 366 | 1 | 365 | 0.0 | 511 |
| MS.gene99949.t1 | AT1G79650 | 66.499 | 397 | 100 | 7 | 1 | 366 | 1 | 395 | 0.0 | 508 |
| MS.gene99949.t1 | AT1G79650 | 65.775 | 374 | 97 | 8 | 1 | 366 | 1 | 351 | 1.58e-166 | 469 |
| MS.gene99949.t1 | AT1G16190 | 62.374 | 396 | 91 | 9 | 1 | 366 | 1 | 368 | 2.18e-165 | 467 |
| MS.gene99949.t1 | AT1G16190 | 60.858 | 373 | 88 | 9 | 24 | 366 | 1 | 345 | 5.70e-149 | 424 |
| MS.gene99949.t1 | AT5G38470 | 56.510 | 384 | 142 | 9 | 1 | 366 | 1 | 377 | 8.90e-135 | 389 |
| MS.gene99949.t1 | AT3G02540 | 51.069 | 421 | 149 | 9 | 1 | 366 | 1 | 419 | 8.78e-131 | 381 |
| MS.gene99949.t1 | AT3G02540 | 50.718 | 418 | 154 | 9 | 1 | 366 | 1 | 418 | 2.54e-129 | 377 |
| MS.gene99949.t1 | AT5G38470 | 55.418 | 323 | 120 | 8 | 1 | 305 | 1 | 317 | 5.88e-106 | 315 |
| MS.gene99949.t1 | AT3G02540 | 47.841 | 301 | 104 | 7 | 1 | 250 | 1 | 299 | 1.02e-75 | 236 |
| MS.gene99949.t1 | AT5G16090 | 43.750 | 96 | 47 | 1 | 1 | 96 | 1 | 89 | 1.27e-19 | 85.5 |
| MS.gene99949.t1 | AT5G16090 | 44.444 | 99 | 51 | 3 | 263 | 360 | 74 | 169 | 1.56e-17 | 79.7 |
Find 100 sgRNAs with CRISPR-Local
Find 319 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCTTTCAGGAGACAATTTC+TGG | 0.118069 | 2.1:+560770 | MS.gene99949:intron |
| TGGACATGGGTGGTGGCAGC+TGG | 0.265592 | 2.1:+560358 | MS.gene99949:CDS |
| GTCACTACCGGAGTTGTTCC+TGG | 0.267181 | 2.1:+560617 | MS.gene99949:CDS |
| CCTGTTTCAGTTGGATTACT+TGG | 0.271776 | 2.1:-560590 | None:intergenic |
| GCAGACTATTCAACAACTTA+TGG | 0.276186 | 2.1:+560338 | MS.gene99949:CDS |
| TCTGGTGTTGGCACAGTTAT+AGG | 0.298020 | 2.1:-559134 | None:intergenic |
| TCTATTGCAGCCTGTACTTC+AGG | 0.312035 | 2.1:+561042 | MS.gene99949:intron |
| ACAGCAATTTCTGCTGCTTC+AGG | 0.324791 | 2.1:-560551 | None:intergenic |
| TGGGTGGTGGCAGCTGGGAC+AGG | 0.346817 | 2.1:+560364 | MS.gene99949:CDS |
| CAGGAGACAATTTCTGGTGC+TGG | 0.348931 | 2.1:+560776 | MS.gene99949:intron |
| CCGATTGCCTCCTGCTCAGC+TGG | 0.353647 | 2.1:-561682 | None:intergenic |
| ATATTCAAGGGAGACGAGTT+AGG | 0.365109 | 2.1:-560644 | None:intergenic |
| ATTGGCAGCCAACTACTTAC+TGG | 0.376662 | 2.1:+561910 | MS.gene99949:CDS |
| GCTGCTTCAAATTTAGTTGC+TGG | 0.382013 | 2.1:+560303 | MS.gene99949:CDS |
| TCTTGTTGTCATGCTTAGTA+AGG | 0.396216 | 2.1:+557602 | MS.gene99949:CDS |
| TCACTACCGGAGTTGTTCCT+GGG | 0.402891 | 2.1:+560618 | MS.gene99949:CDS |
| CCAAGTAATCCAACTGAAAC+AGG | 0.407427 | 2.1:+560590 | MS.gene99949:CDS |
| TTAGATACCTGGAGAATTTG+TGG | 0.408356 | 2.1:-560952 | None:intergenic |
| ACAATTTCTGGTGCTGGAGC+TGG | 0.411957 | 2.1:+560782 | MS.gene99949:CDS |
| TCTGGTGCTGGAGCTGGAGC+TGG | 0.428394 | 2.1:+560788 | MS.gene99949:CDS |
| TGTACTACAGGTGTGGAATC+TGG | 0.428565 | 2.1:-559152 | None:intergenic |
| AGCACGAAGAGCACGATTGA+CGG | 0.441378 | 2.1:-560391 | None:intergenic |
| AGACAAAAGCCATACTTTGT+AGG | 0.443079 | 2.1:-559299 | None:intergenic |
| CAGAGTTCATCCTTCTGATT+CGG | 0.444243 | 2.1:+557340 | MS.gene99949:CDS |
| AAGAATATTGAAGACATTCA+AGG | 0.452792 | 2.1:+557477 | MS.gene99949:CDS |
| TGACATGCAGCTAGAGGCTA+TGG | 0.454971 | 2.1:+561832 | MS.gene99949:intron |
| AGTAAAGCCTTGGGATCTGC+TGG | 0.457633 | 2.1:+558993 | MS.gene99949:CDS |
| GATGAACTCTGATTTCGAAA+TGG | 0.460278 | 2.1:-557328 | None:intergenic |
| TAATGTGACGCCAGCTGAGC+AGG | 0.461283 | 2.1:+561672 | MS.gene99949:CDS |
| CCAGCTGAGCAGGAGGCAAT+CGG | 0.461594 | 2.1:+561682 | MS.gene99949:CDS |
| CTATTTGCAGAGTAAAGCCT+TGG | 0.463189 | 2.1:+558983 | MS.gene99949:intron |
| GACAATAAAGTCTCTGAAGA+TGG | 0.470434 | 2.1:+557576 | MS.gene99949:CDS |
| AGTGTTACTACAGATACTTA+TGG | 0.475618 | 2.1:+560276 | MS.gene99949:intron |
| CTGTTTCAGTTGGATTACTT+GGG | 0.481500 | 2.1:-560589 | None:intergenic |
| GTGACCCCACCTGTTTCAGT+TGG | 0.484296 | 2.1:-560599 | None:intergenic |
| AACTACTTACTGGAAAATGC+TGG | 0.492726 | 2.1:+561920 | MS.gene99949:CDS |
| TCCCTTGAATATGTTTCCAC+AGG | 0.499007 | 2.1:+560655 | MS.gene99949:CDS |
| CTTCTTGAGGAACAATCCCC+AGG | 0.503164 | 2.1:+560820 | MS.gene99949:CDS |
| TACCTGGAGAATTTGTGGAT+TGG | 0.503302 | 2.1:-560947 | None:intergenic |
| AGCAGCAGAAATTGCTGTAC+CGG | 0.508726 | 2.1:+560556 | MS.gene99949:CDS |
| CTCACAGTGAAGACTTTGAA+AGG | 0.508732 | 2.1:+557302 | MS.gene99949:CDS |
| CAACGCATCTCCTGCAGTTG+TGG | 0.510395 | 2.1:+559274 | MS.gene99949:CDS |
| CTGGTTCGCTTGACTTCTTG+AGG | 0.511578 | 2.1:+560807 | MS.gene99949:CDS |
| ACTCACTGAGTCTGTACTAC+AGG | 0.513693 | 2.1:-559164 | None:intergenic |
| TTTCCGAGCTCCTGAAGTAC+AGG | 0.521041 | 2.1:-561052 | None:intergenic |
| TATTTGCAGAGTAAAGCCTT+GGG | 0.523624 | 2.1:+558984 | MS.gene99949:intron |
| TACCTGTGGAAACATATTCA+AGG | 0.524366 | 2.1:-560657 | None:intergenic |
| GGGTGGTGGCAGCTGGGACA+GGG | 0.526645 | 2.1:+560365 | MS.gene99949:CDS |
| TTTGTAGGTGCCACAACTGC+AGG | 0.530119 | 2.1:-559284 | None:intergenic |
| AAGTAATCTACAGCACGCTC+TGG | 0.531024 | 2.1:-560426 | None:intergenic |
| ACTACTTACTGGAAAATGCT+GGG | 0.533868 | 2.1:+561921 | MS.gene99949:CDS |
| TACTACAGATACTTATGGAC+AGG | 0.538234 | 2.1:+560281 | MS.gene99949:CDS |
| ATCAGCAATTGTTGTCCGCA+TGG | 0.538362 | 2.1:-557513 | None:intergenic |
| ACCTGTGGAAACATATTCAA+GGG | 0.538673 | 2.1:-560656 | None:intergenic |
| GGACATGGGTGGTGGCAGCT+GGG | 0.540658 | 2.1:+560359 | MS.gene99949:CDS |
| TTACTTGGGTATTGAGCAGC+CGG | 0.541551 | 2.1:-560575 | None:intergenic |
| TATTCAAGGGAGACGAGTTA+GGG | 0.546347 | 2.1:-560643 | None:intergenic |
| TCACCCTTCAGTACCGTCCA+TGG | 0.546504 | 2.1:-561143 | None:intergenic |
| ATCCAATCCACAAATTCTCC+AGG | 0.549169 | 2.1:+560945 | MS.gene99949:CDS |
| GAACCCATGGACGGTACTGA+AGG | 0.549758 | 2.1:+561139 | MS.gene99949:CDS |
| CAACTTATGGACATGGGTGG+TGG | 0.550778 | 2.1:+560351 | MS.gene99949:CDS |
| ATGTGACCGTGATGAGCAAT+TGG | 0.553039 | 2.1:+561892 | MS.gene99949:CDS |
| TGCTGGAACTTCATCTACTC+AGG | 0.553374 | 2.1:+559010 | MS.gene99949:CDS |
| GAGCTCGGAAAGCAAAATCC+AGG | 0.561167 | 2.1:+561064 | MS.gene99949:CDS |
| GAAACAGGTGGGGTCACTAC+CGG | 0.561305 | 2.1:+560605 | MS.gene99949:CDS |
| CACCCTTCAGTACCGTCCAT+GGG | 0.562359 | 2.1:-561142 | None:intergenic |
| TCAGCAATTGTTGTCCGCAT+GGG | 0.565758 | 2.1:-557512 | None:intergenic |
| TCACAGTGAAGACTTTGAAA+GGG | 0.581575 | 2.1:+557303 | MS.gene99949:CDS |
| GTTTCAAGCATTGCGGACAA+TGG | 0.588792 | 2.1:+560918 | MS.gene99949:intron |
| TATTCAACAACTTATGGACA+TGG | 0.590819 | 2.1:+560344 | MS.gene99949:CDS |
| CAACAATTGCTGATTCACAA+TGG | 0.594059 | 2.1:+557522 | MS.gene99949:CDS |
| TCAGTTGATAAATGAACCCA+TGG | 0.600530 | 2.1:+561126 | MS.gene99949:CDS |
| CTGAGCAGGAGGCAATCGGA+AGG | 0.602554 | 2.1:+561686 | MS.gene99949:CDS |
| TCAATAAGTCTCAAGAGACC+TGG | 0.604931 | 2.1:-561082 | None:intergenic |
| CAGCCTGTACTTCAGGAGCT+CGG | 0.605573 | 2.1:+561049 | MS.gene99949:intron |
| GGTGTTGGCACAGTTATAGG+TGG | 0.606530 | 2.1:-559131 | None:intergenic |
| TGAAGTTCCAGCAGATCCCA+AGG | 0.610131 | 2.1:-559000 | None:intergenic |
| CTGAGTCTGTACTACAGGTG+TGG | 0.617878 | 2.1:-559159 | None:intergenic |
| TGATAGAGCCTCTGTCATAG+AGG | 0.619305 | 2.1:+561859 | MS.gene99949:CDS |
| GACATGCAGCTAGAGGCTAT+GGG | 0.619380 | 2.1:+561833 | MS.gene99949:intron |
| AACCCATGGACGGTACTGAA+GGG | 0.627966 | 2.1:+561140 | MS.gene99949:CDS |
| GGAGACGAGTTAGGGACCCC+AGG | 0.628070 | 2.1:-560635 | None:intergenic |
| TGTGACGCCAGCTGAGCAGG+AGG | 0.630237 | 2.1:+561675 | MS.gene99949:CDS |
| AGTTATAGGTGGATTGCTAA+CGG | 0.630709 | 2.1:-559120 | None:intergenic |
| CTACTTACTGGAAAATGCTG+GGG | 0.630947 | 2.1:+561922 | MS.gene99949:CDS |
| GGCGTCACATTAACAGCATG+AGG | 0.631358 | 2.1:-561661 | None:intergenic |
| GTAATCCAACTGAAACAGGT+GGG | 0.636270 | 2.1:+560594 | MS.gene99949:CDS |
| AGTAATCCAACTGAAACAGG+TGG | 0.636970 | 2.1:+560593 | MS.gene99949:CDS |
| TTGATAAATGAACCCATGGA+CGG | 0.638539 | 2.1:+561130 | MS.gene99949:CDS |
| AACATACATACCGAATCAGA+AGG | 0.642123 | 2.1:-557350 | None:intergenic |
| AGGGACCCCAGGAACAACTC+CGG | 0.643664 | 2.1:-560624 | None:intergenic |
| TGGCTGCCAATTGCTCATCA+CGG | 0.645634 | 2.1:-561898 | None:intergenic |
| ATTCAACAACTTATGGACAT+GGG | 0.649122 | 2.1:+560345 | MS.gene99949:CDS |
| TGAGCAGGAGGCAATCGGAA+GGG | 0.655930 | 2.1:+561687 | MS.gene99949:CDS |
| TAATCCAACTGAAACAGGTG+GGG | 0.656148 | 2.1:+560595 | MS.gene99949:CDS |
| ATATTTAGTTTCAAGCATTG+CGG | 0.659936 | 2.1:+560911 | MS.gene99949:intron |
| ACAGGTGTGGAATCTGGTGT+TGG | 0.666566 | 2.1:-559146 | None:intergenic |
| CAACAACTTATGGACATGGG+TGG | 0.667629 | 2.1:+560348 | MS.gene99949:CDS |
| CACTACCGGAGTTGTTCCTG+GGG | 0.671383 | 2.1:+560619 | MS.gene99949:CDS |
| GGAAAAGATAATTACCCATG+CGG | 0.704659 | 2.1:+557498 | MS.gene99949:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAATTGAATGAATATT+GGG | - | chr2.1:557420-557439 | None:intergenic | 10.0% |
| !! | TTAGAATGTTATATATAATT+AGG | - | chr2.1:557782-557801 | None:intergenic | 10.0% |
| !!! | TTTTTGTAACTTATTTTATT+TGG | + | chr2.1:559231-559250 | MS.gene99949:intron | 10.0% |
| !! | AAAAAATTGAATGAATATTG+GGG | - | chr2.1:557419-557438 | None:intergenic | 15.0% |
| !! | AAGAATGTTAATAAAAAAAG+AGG | - | chr2.1:557379-557398 | None:intergenic | 15.0% |
| !! | AATAATAAACATACAATACA+AGG | + | chr2.1:557915-557934 | MS.gene99949:intron | 15.0% |
| !! | ATCTAAATTACTTTCAATTT+AGG | + | chr2.1:557654-557673 | MS.gene99949:intron | 15.0% |
| !! | ATTAATTATAATATTAGACC+AGG | - | chr2.1:559482-559501 | None:intergenic | 15.0% |
| !! | ATTTATAAAAATAAATGGAG+AGG | + | chr2.1:561452-561471 | MS.gene99949:intron | 15.0% |
| !! | CAAAAAAATTGAATGAATAT+TGG | - | chr2.1:557421-557440 | None:intergenic | 15.0% |
| !! | GGTAAAAATAATAATTTGAA+TGG | + | chr2.1:560676-560695 | MS.gene99949:intron | 15.0% |
| !! | TACAAAAAAACATAAGTTTA+TGG | - | chr2.1:559219-559238 | None:intergenic | 15.0% |
| !! | TCTAAATTACTTTCAATTTA+GGG | + | chr2.1:557655-557674 | MS.gene99949:intron | 15.0% |
| !! | TCTCCATTTATAAAAATAAA+TGG | + | chr2.1:561447-561466 | MS.gene99949:intron | 15.0% |
| !! | TTAACAATTATTTATATGCA+GGG | + | chr2.1:560524-560543 | MS.gene99949:intron | 15.0% |
| !! | TTTAACAATTATTTATATGC+AGG | + | chr2.1:560523-560542 | MS.gene99949:intron | 15.0% |
| !!! | ATGAACACTATTTTAATTTA+GGG | - | chr2.1:560154-560173 | None:intergenic | 15.0% |
| !!! | CTCATTTTTTAATATCTTTT+TGG | + | chr2.1:559044-559063 | MS.gene99949:intron | 15.0% |
| !!! | GTAAGGTATTATTATTATTA+TGG | + | chr2.1:557619-557638 | MS.gene99949:intron | 15.0% |
| !!! | TATGAACACTATTTTAATTT+AGG | - | chr2.1:560155-560174 | None:intergenic | 15.0% |
| !!! | TCTCCATTTATTTTTATAAA+TGG | - | chr2.1:561453-561472 | None:intergenic | 15.0% |
| !! | AAAAATTGAATGAATATTGG+GGG | - | chr2.1:557418-557437 | None:intergenic | 20.0% |
| !! | ATCAAATAAGATAAATCACA+AGG | - | chr2.1:560499-560518 | None:intergenic | 20.0% |
| !! | ATTATTATTGAACAGAACTT+TGG | - | chr2.1:559919-559938 | None:intergenic | 20.0% |
| !! | CAAAATAAAGTACAAAGTAA+CGG | - | chr2.1:560742-560761 | None:intergenic | 20.0% |
| !! | CTAAATTACTTTCAATTTAG+GGG | + | chr2.1:557656-557675 | MS.gene99949:intron | 20.0% |
| !! | TATAATAGAAACATGACTAT+GGG | - | chr2.1:561241-561260 | None:intergenic | 20.0% |
| !! | TCGTAGAATATAAATTTAGT+TGG | + | chr2.1:558911-558930 | MS.gene99949:intron | 20.0% |
| !! | TCTTTAATTATTGAGTATGA+TGG | + | chr2.1:558332-558351 | MS.gene99949:intron | 20.0% |
| !! | TGAAACTAATTAATGATGTT+GGG | + | chr2.1:561365-561384 | MS.gene99949:intron | 20.0% |
| !! | TTATAATAGAAACATGACTA+TGG | - | chr2.1:561242-561261 | None:intergenic | 20.0% |
| !! | TTATGGTTGTAATTTGAATT+TGG | + | chr2.1:559456-559475 | MS.gene99949:intron | 20.0% |
| !! | TTGAAACTAATTAATGATGT+TGG | + | chr2.1:561364-561383 | MS.gene99949:intron | 20.0% |
| !!! | CAAATTATTATTTTTACCTG+TGG | - | chr2.1:560674-560693 | None:intergenic | 20.0% |
| !!! | GTTTTGTTATTATCAGATAA+TGG | + | chr2.1:557446-557465 | MS.gene99949:intron | 20.0% |
| !!! | TATTAGAGATAATTTTGATC+AGG | + | chr2.1:561624-561643 | MS.gene99949:intron | 20.0% |
| !!! | TCAATTTCATTTTTTTGCAA+AGG | - | chr2.1:561781-561800 | None:intergenic | 20.0% |
| !!! | TGTATTACTGATTATAAGAA+TGG | - | chr2.1:559420-559439 | None:intergenic | 20.0% |
| ! | AAAATAGATAGTTAGATACC+TGG | - | chr2.1:560966-560985 | None:intergenic | 25.0% |
| ! | AACTGAACATTACTCTTAAA+AGG | - | chr2.1:558201-558220 | None:intergenic | 25.0% |
| ! | AAGAATATTGAAGACATTCA+AGG | + | chr2.1:557477-557496 | MS.gene99949:CDS | 25.0% |
| ! | ACATTGAAATGTATTTCAGA+AGG | - | chr2.1:560247-560266 | None:intergenic | 25.0% |
| ! | AGACAAAATCTACATAAAGA+TGG | - | chr2.1:559379-559398 | None:intergenic | 25.0% |
| ! | AGGTCATGGTAAAATTAAAT+TGG | + | chr2.1:559573-559592 | MS.gene99949:intron | 25.0% |
| ! | ATACACACAAAATATAGATG+TGG | - | chr2.1:561410-561429 | None:intergenic | 25.0% |
| ! | ATGATTGTAAAATGCAAAGA+TGG | - | chr2.1:561210-561229 | None:intergenic | 25.0% |
| ! | ATTCTTGATGCTAAAAGTTA+TGG | + | chr2.1:559439-559458 | MS.gene99949:intron | 25.0% |
| ! | GAAACTAAATATGCAGAATA+TGG | - | chr2.1:560903-560922 | None:intergenic | 25.0% |
| ! | GAGAGAAATAATTGAATAGA+TGG | - | chr2.1:559522-559541 | None:intergenic | 25.0% |
| ! | GGTCATGGTAAAATTAAATT+GGG | + | chr2.1:559574-559593 | MS.gene99949:intron | 25.0% |
| ! | TAAAAATGAATCAGCACATA+TGG | - | chr2.1:561808-561827 | None:intergenic | 25.0% |
| ! | TAACAACATTGAAGTAAAGT+AGG | - | chr2.1:558272-558291 | None:intergenic | 25.0% |
| ! | TACACACAAAATATAGATGT+GGG | - | chr2.1:561409-561428 | None:intergenic | 25.0% |
| ! | TATAAGAATTTAATGCAGCA+TGG | + | chr2.1:557877-557896 | MS.gene99949:intron | 25.0% |
| ! | TCCACTTATAAGTTGTTTAA+CGG | + | chr2.1:557705-557724 | MS.gene99949:intron | 25.0% |
| ! | TTATATTCTACGACCTAAAT+TGG | - | chr2.1:558904-558923 | None:intergenic | 25.0% |
| !! | AATTCAAATCCTCTTTTTGA+AGG | + | chr2.1:558155-558174 | MS.gene99949:intron | 25.0% |
| !! | AATTCGAATCCTTTTTCTAA+AGG | + | chr2.1:558121-558140 | MS.gene99949:intron | 25.0% |
| !! | ATATTTAGTTTCAAGCATTG+CGG | + | chr2.1:560911-560930 | MS.gene99949:intron | 25.0% |
| !! | ATTCAAATCCTCTTTTTGAA+GGG | + | chr2.1:558156-558175 | MS.gene99949:intron | 25.0% |
| !! | ATTCGAATCCTTTTTCTAAA+GGG | + | chr2.1:558122-558141 | MS.gene99949:intron | 25.0% |
| !! | TATACCACTATAGCATTTTA+GGG | + | chr2.1:558444-558463 | MS.gene99949:intron | 25.0% |
| !! | TCTATTCTTCATTTTAGACT+AGG | - | chr2.1:560038-560057 | None:intergenic | 25.0% |
| !! | TTTAGGGTGTAACTATAATT+AGG | - | chr2.1:560138-560157 | None:intergenic | 25.0% |
| !!! | AATTTAATTTTACCATGACC+TGG | - | chr2.1:559574-559593 | None:intergenic | 25.0% |
| !!! | AGAGATTATTTTTTCCTTCA+GGG | - | chr2.1:558807-558826 | None:intergenic | 25.0% |
| !!! | CCTTAAATCCTTTTTTTGAA+GGG | + | chr2.1:558088-558107 | MS.gene99949:intron | 25.0% |
| !!! | GTTTTATTGCTATGTACTTT+AGG | + | chr2.1:558308-558327 | MS.gene99949:intron | 25.0% |
| !!! | TAGAGATTATTTTTTCCTTC+AGG | - | chr2.1:558808-558827 | None:intergenic | 25.0% |
| !!! | TCCTTAAATCCTTTTTTTGA+AGG | + | chr2.1:558087-558106 | MS.gene99949:intron | 25.0% |
| !!! | TGTTTTTTGGGATCTAATTT+AGG | - | chr2.1:558859-558878 | None:intergenic | 25.0% |
| AAAATGCTATAGTGGTATAG+CGG | - | chr2.1:558443-558462 | None:intergenic | 30.0% | |
| AACAGTAAAATGGTAGATTG+TGG | - | chr2.1:558963-558982 | None:intergenic | 30.0% | |
| AAGTTTATGGAAAAGCTACA+CGG | - | chr2.1:559206-559225 | None:intergenic | 30.0% | |
| ATACCTCTAGCAAAACTATA+GGG | + | chr2.1:558515-558534 | MS.gene99949:intron | 30.0% | |
| ATTCAACAACTTATGGACAT+GGG | + | chr2.1:560345-560364 | MS.gene99949:CDS | 30.0% | |
| CATTTACACCCTTCAAAAAA+AGG | - | chr2.1:558099-558118 | None:intergenic | 30.0% | |
| CCCTTCAAAAAAAGGATTTA+AGG | - | chr2.1:558091-558110 | None:intergenic | 30.0% | |
| CTGCAAATAGAACAGTAAAA+TGG | - | chr2.1:558973-558992 | None:intergenic | 30.0% | |
| GAAACTTGAGTTAGTATGTA+GGG | - | chr2.1:560116-560135 | None:intergenic | 30.0% | |
| GTTAAACAACTTATAAGTGG+AGG | - | chr2.1:557706-557725 | None:intergenic | 30.0% | |
| TATTCAACAACTTATGGACA+TGG | + | chr2.1:560344-560363 | MS.gene99949:CDS | 30.0% | |
| TCTCTCTCTCAAAACTATAA+GGG | + | chr2.1:559536-559555 | MS.gene99949:intron | 30.0% | |
| TGTGTGTATCTCTTTCTAAA+TGG | + | chr2.1:561421-561440 | MS.gene99949:intron | 30.0% | |
| TGTTTCTTTATCTCTCCAAA+TGG | - | chr2.1:561337-561356 | None:intergenic | 30.0% | |
| TTCTCTCTCTCAAAACTATA+AGG | + | chr2.1:559535-559554 | MS.gene99949:intron | 30.0% | |
| ! | AATTTGTTTATTGCAGCAAG+AGG | - | chr2.1:560188-560207 | None:intergenic | 30.0% |
| ! | ACAAGACTTGTTCAAGTATA+AGG | - | chr2.1:559970-559989 | None:intergenic | 30.0% |
| ! | AGTGTTACTACAGATACTTA+TGG | + | chr2.1:560276-560295 | MS.gene99949:intron | 30.0% |
| ! | ATACCACTATAGCATTTTAG+GGG | + | chr2.1:558445-558464 | MS.gene99949:intron | 30.0% |
| ! | ATCATCTAATACCTGTCTTT+TGG | + | chr2.1:560990-561009 | MS.gene99949:intron | 30.0% |
| ! | ATGTAGATTTTGTCTGATGA+AGG | + | chr2.1:559384-559403 | MS.gene99949:intron | 30.0% |
| ! | ATTTTCTCAGCCTAAAGTTT+GGG | - | chr2.1:560015-560034 | None:intergenic | 30.0% |
| ! | CATTTACACCCTTTAGAAAA+AGG | - | chr2.1:558133-558152 | None:intergenic | 30.0% |
| ! | CTATACCACTATAGCATTTT+AGG | + | chr2.1:558443-558462 | MS.gene99949:intron | 30.0% |
| ! | TATACTTGAACAAGTCTTGT+AGG | + | chr2.1:559970-559989 | MS.gene99949:intron | 30.0% |
| ! | TTCTCAACAGATTAGGTTTT+AGG | + | chr2.1:558566-558585 | MS.gene99949:intron | 30.0% |
| !! | TAGAGATAATTTTGATCAGG+CGG | + | chr2.1:561627-561646 | MS.gene99949:intron | 30.0% |
| !!! | CATTTTTTTGCAAAGGCATA+AGG | - | chr2.1:561774-561793 | None:intergenic | 30.0% |
| !!! | TTTTGAGTTGAAACTCTTTC+AGG | + | chr2.1:560757-560776 | MS.gene99949:intron | 30.0% |
| AAACTATCACAGACCATACA+TGG | - | chr2.1:561181-561200 | None:intergenic | 35.0% | |
| AACATACATACCGAATCAGA+AGG | - | chr2.1:557353-557372 | None:intergenic | 35.0% | |
| AACTACTTACTGGAAAATGC+TGG | + | chr2.1:561920-561939 | MS.gene99949:CDS | 35.0% | |
| AATGAAGTTGTACACAAGTC+TGG | - | chr2.1:559757-559776 | None:intergenic | 35.0% | |
| ACCTGTGGAAACATATTCAA+GGG | - | chr2.1:560659-560678 | None:intergenic | 35.0% | |
| ACTACTTACTGGAAAATGCT+GGG | + | chr2.1:561921-561940 | MS.gene99949:CDS | 35.0% | |
| AGACAAAAGCCATACTTTGT+AGG | - | chr2.1:559302-559321 | None:intergenic | 35.0% | |
| AGTATACTGCTTTCCATGTA+TGG | + | chr2.1:561165-561184 | MS.gene99949:intron | 35.0% | |
| ATACACCGAAATCCTAATAG+CGG | - | chr2.1:558064-558083 | None:intergenic | 35.0% | |
| ATGAAACAAAATGCCTACCT+GGG | - | chr2.1:560840-560859 | None:intergenic | 35.0% | |
| ATTTGTACAACCCCAACTTA+GGG | - | chr2.1:559677-559696 | None:intergenic | 35.0% | |
| CAAACAAATGACCAAAAGAC+AGG | - | chr2.1:561004-561023 | None:intergenic | 35.0% | |
| CATTAACACCCTTCAAAAAG+AGG | - | chr2.1:558167-558186 | None:intergenic | 35.0% | |
| CTGTTTCAGTTGGATTACTT+GGG | - | chr2.1:560592-560611 | None:intergenic | 35.0% | |
| GAATCAACAATGAGCAGTTT+AGG | - | chr2.1:560464-560483 | None:intergenic | 35.0% | |
| GAGTTAGTATGTAGGGATTT+AGG | - | chr2.1:560109-560128 | None:intergenic | 35.0% | |
| GATACCTCTAGCAAAACTAT+AGG | + | chr2.1:558514-558533 | MS.gene99949:intron | 35.0% | |
| GATGAACTCTGATTTCGAAA+TGG | - | chr2.1:557331-557350 | None:intergenic | 35.0% | |
| GCAGACTATTCAACAACTTA+TGG | + | chr2.1:560338-560357 | MS.gene99949:CDS | 35.0% | |
| GCCGTTAAACAACTTATAAG+TGG | - | chr2.1:557709-557728 | None:intergenic | 35.0% | |
| GGAAAAGATAATTACCCATG+CGG | + | chr2.1:557498-557517 | MS.gene99949:CDS | 35.0% | |
| GGAAACTTGAGTTAGTATGT+AGG | - | chr2.1:560117-560136 | None:intergenic | 35.0% | |
| GGCAAAAGATGTAAATGACA+AGG | - | chr2.1:560721-560740 | None:intergenic | 35.0% | |
| GTAGGAATGGAGATCTAAAA+TGG | - | chr2.1:561315-561334 | None:intergenic | 35.0% | |
| GTTGTAATTTGAATTTGGCC+TGG | + | chr2.1:559461-559480 | MS.gene99949:intron | 35.0% | |
| TACCTGTGGAAACATATTCA+AGG | - | chr2.1:560660-560679 | None:intergenic | 35.0% | |
| TACTACAGATACTTATGGAC+AGG | + | chr2.1:560281-560300 | MS.gene99949:CDS | 35.0% | |
| TATTTGCAGAGTAAAGCCTT+GGG | + | chr2.1:558984-559003 | MS.gene99949:intron | 35.0% | |
| TCAGATCACAGAAAATCATC+AGG | - | chr2.1:559604-559623 | None:intergenic | 35.0% | |
| TCTTTATCTCTCCAAATGGT+AGG | - | chr2.1:561333-561352 | None:intergenic | 35.0% | |
| TGTAGAGTTCTCAACAGATT+AGG | + | chr2.1:558559-558578 | MS.gene99949:intron | 35.0% | |
| TTACCTTCATGTCACAAACA+TGG | - | chr2.1:561495-561514 | None:intergenic | 35.0% | |
| TTAGATACCTGGAGAATTTG+TGG | - | chr2.1:560955-560974 | None:intergenic | 35.0% | |
| TTGATAAATGAACCCATGGA+CGG | + | chr2.1:561130-561149 | MS.gene99949:CDS | 35.0% | |
| TTGTGAGTAACCCAAACTTT+AGG | + | chr2.1:560002-560021 | MS.gene99949:intron | 35.0% | |
| ! | AAAGTTTGGGTTACTCACAA+TGG | - | chr2.1:560002-560021 | None:intergenic | 35.0% |
| ! | AATGGAGATCTAAAATGGAG+AGG | - | chr2.1:561310-561329 | None:intergenic | 35.0% |
| ! | AGCATTTTCCAGTAAGTAGT+TGG | - | chr2.1:561921-561940 | None:intergenic | 35.0% |
| ! | CTTTTGTCTCTATGTTTCTC+TGG | + | chr2.1:559313-559332 | MS.gene99949:intron | 35.0% |
| ! | GACAATAAAGTCTCTGAAGA+TGG | + | chr2.1:557576-557595 | MS.gene99949:CDS | 35.0% |
| ! | GATTTTCTCAGCCTAAAGTT+TGG | - | chr2.1:560016-560035 | None:intergenic | 35.0% |
| ! | GGGGTTGTACAAATGTTTTT+GGG | + | chr2.1:559683-559702 | MS.gene99949:intron | 35.0% |
| ! | GTAGGGATTTAGGTTTACTT+AGG | - | chr2.1:560099-560118 | None:intergenic | 35.0% |
| ! | TCACAGTGAAGACTTTGAAA+GGG | + | chr2.1:557303-557322 | MS.gene99949:CDS | 35.0% |
| ! | TCTTGTTGTCATGCTTAGTA+AGG | + | chr2.1:557602-557621 | MS.gene99949:CDS | 35.0% |
| ! | TGGGGTTGTACAAATGTTTT+TGG | + | chr2.1:559682-559701 | MS.gene99949:intron | 35.0% |
| !! | AGTTATAGGTGGATTGCTAA+CGG | - | chr2.1:559123-559142 | None:intergenic | 35.0% |
| !! | CAACAATTGCTGATTCACAA+TGG | + | chr2.1:557522-557541 | MS.gene99949:CDS | 35.0% |
| !! | TCAGTTGATAAATGAACCCA+TGG | + | chr2.1:561126-561145 | MS.gene99949:CDS | 35.0% |
| !!! | TTGTACAAATGTTTTTGGGC+TGG | + | chr2.1:559687-559706 | MS.gene99949:intron | 35.0% |
| !!! | TTTTGCTAGAGGTATCTTGT+AGG | - | chr2.1:558510-558529 | None:intergenic | 35.0% |
| AAACATGGCAAAGACGAGTT+AGG | - | chr2.1:561480-561499 | None:intergenic | 40.0% | |
| AGAATCCTAATCGAACCACA+GGG | + | chr2.1:560055-560074 | MS.gene99949:intron | 40.0% | |
| AGATCTCCATTCCTACCATT+TGG | + | chr2.1:561319-561338 | MS.gene99949:intron | 40.0% | |
| AGTAATCCAACTGAAACAGG+TGG | + | chr2.1:560593-560612 | MS.gene99949:CDS | 40.0% | |
| ATATTCAAGGGAGACGAGTT+AGG | - | chr2.1:560647-560666 | None:intergenic | 40.0% | |
| ATCCAATCCACAAATTCTCC+AGG | + | chr2.1:560945-560964 | MS.gene99949:CDS | 40.0% | |
| ATCTCTCCAAATGGTAGGAA+TGG | - | chr2.1:561328-561347 | None:intergenic | 40.0% | |
| ATTTCAGAAGGTTTGACGAC+AGG | - | chr2.1:560235-560254 | None:intergenic | 40.0% | |
| CAAAAATGCCTCTATGACAG+AGG | - | chr2.1:561870-561889 | None:intergenic | 40.0% | |
| CAGAGTTCATCCTTCTGATT+CGG | + | chr2.1:557340-557359 | MS.gene99949:CDS | 40.0% | |
| CAGTCACTAACTCATACAAG+AGG | - | chr2.1:559085-559104 | None:intergenic | 40.0% | |
| CATTTGTACAACCCCAACTT+AGG | - | chr2.1:559678-559697 | None:intergenic | 40.0% | |
| CCAAGTAATCCAACTGAAAC+AGG | + | chr2.1:560590-560609 | MS.gene99949:CDS | 40.0% | |
| CCTGTTTCAGTTGGATTACT+TGG | - | chr2.1:560593-560612 | None:intergenic | 40.0% | |
| CTACTTACTGGAAAATGCTG+GGG | + | chr2.1:561922-561941 | MS.gene99949:CDS | 40.0% | |
| CTATTTGCAGAGTAAAGCCT+TGG | + | chr2.1:558983-559002 | MS.gene99949:intron | 40.0% | |
| CTCACAGTGAAGACTTTGAA+AGG | + | chr2.1:557302-557321 | MS.gene99949:CDS | 40.0% | |
| CTCTTTCAGGAGACAATTTC+TGG | + | chr2.1:560770-560789 | MS.gene99949:intron | 40.0% | |
| GATGAAACAAAATGCCTACC+TGG | - | chr2.1:560841-560860 | None:intergenic | 40.0% | |
| GCTGCTTCAAATTTAGTTGC+TGG | + | chr2.1:560303-560322 | MS.gene99949:CDS | 40.0% | |
| GGTTAATCTTAGCACGTACT+CGG | - | chr2.1:558769-558788 | None:intergenic | 40.0% | |
| GTAATCCAACTGAAACAGGT+GGG | + | chr2.1:560594-560613 | MS.gene99949:CDS | 40.0% | |
| TAAATGCTACAGATGCTTCC+TGG | - | chr2.1:561544-561563 | None:intergenic | 40.0% | |
| TAATCCAACTGAAACAGGTG+GGG | + | chr2.1:560595-560614 | MS.gene99949:CDS | 40.0% | |
| TACCTGGAGAATTTGTGGAT+TGG | - | chr2.1:560950-560969 | None:intergenic | 40.0% | |
| TAGAATCCTAATCGAACCAC+AGG | + | chr2.1:560054-560073 | MS.gene99949:intron | 40.0% | |
| TATTCAAGGGAGACGAGTTA+GGG | - | chr2.1:560646-560665 | None:intergenic | 40.0% | |
| TCAATAAGTCTCAAGAGACC+TGG | - | chr2.1:561085-561104 | None:intergenic | 40.0% | |
| TCAGGGACTTTATACTCTTC+TGG | - | chr2.1:558790-558809 | None:intergenic | 40.0% | |
| TCCCTTGAATATGTTTCCAC+AGG | + | chr2.1:560655-560674 | MS.gene99949:CDS | 40.0% | |
| TGAAACAAAATGCCTACCTG+GGG | - | chr2.1:560839-560858 | None:intergenic | 40.0% | |
| TTCTGCTAGAGTGACACTAT+TGG | - | chr2.1:557948-557967 | None:intergenic | 40.0% | |
| TTGCCATGTTTGTGACATGA+AGG | + | chr2.1:561489-561508 | MS.gene99949:intron | 40.0% | |
| TTTACCATGACCTGGTCTAT+TGG | - | chr2.1:559566-559585 | None:intergenic | 40.0% | |
| ! | AGATAGAACTAGCCTGCATT+TGG | + | chr2.1:558683-558702 | MS.gene99949:intron | 40.0% |
| ! | CGTACTCGGAAATCTTGTTT+AGG | - | chr2.1:558755-558774 | None:intergenic | 40.0% |
| ! | GAAGAGTATAAAGTCCCTGA+AGG | + | chr2.1:558790-558809 | MS.gene99949:intron | 40.0% |
| ! | GGCTGAATTTTGCACTATCA+GGG | + | chr2.1:557677-557696 | MS.gene99949:intron | 40.0% |
| ! | TGTTTCGTTCAAAGCTCTGA+AGG | + | chr2.1:559632-559651 | MS.gene99949:intron | 40.0% |
| !! | AATGCAGGCTAGTTCTATCT+TGG | - | chr2.1:558683-558702 | None:intergenic | 40.0% |
| !! | CTACCCTATAGTTTTGCTAG+AGG | - | chr2.1:558521-558540 | None:intergenic | 40.0% |
| !! | GTTTCGTTCAAAGCTCTGAA+GGG | + | chr2.1:559633-559652 | MS.gene99949:intron | 40.0% |
| !! | TATAGTGGTATAGCGGATAG+CGG | - | chr2.1:558436-558455 | None:intergenic | 40.0% |
| !!! | AGGGTGACGTAGTGTTTTTT+GGG | - | chr2.1:558871-558890 | None:intergenic | 40.0% |
| !!! | CTCTGTCATAGAGGCATTTT+TGG | + | chr2.1:561868-561887 | MS.gene99949:CDS | 40.0% |
| !!! | GGTAATGTTTTGACCTGTTG+TGG | + | chr2.1:561510-561529 | MS.gene99949:intron | 40.0% |
| AACTTAGGGTTGGGCAGAAT+TGG | - | chr2.1:559663-559682 | None:intergenic | 45.0% | |
| AAGCAACATGTGAGAGAAGC+GGG | - | chr2.1:558711-558730 | None:intergenic | 45.0% | |
| AAGGTTTGACGACAGGATAG+AGG | - | chr2.1:560228-560247 | None:intergenic | 45.0% | |
| AAGTAATCTACAGCACGCTC+TGG | - | chr2.1:560429-560448 | None:intergenic | 45.0% | |
| AATTCTGCCCAACCCTAAGT+TGG | + | chr2.1:559662-559681 | MS.gene99949:intron | 45.0% | |
| ACTCACTGAGTCTGTACTAC+AGG | - | chr2.1:559167-559186 | None:intergenic | 45.0% | |
| AGCAGCAGAAATTGCTGTAC+CGG | + | chr2.1:560556-560575 | MS.gene99949:CDS | 45.0% | |
| AGTGATGTCTGAATGCAGTC+AGG | - | chr2.1:559783-559802 | None:intergenic | 45.0% | |
| ATCAGCAATTGTTGTCCGCA+TGG | - | chr2.1:557516-557535 | None:intergenic | 45.0% | |
| ATCTAGTACAGCATTCCCTG+TGG | - | chr2.1:560073-560092 | None:intergenic | 45.0% | |
| ATGTGACCGTGATGAGCAAT+TGG | + | chr2.1:561892-561911 | MS.gene99949:CDS | 45.0% | |
| ATTCTGCCCAACCCTAAGTT+GGG | + | chr2.1:559663-559682 | MS.gene99949:intron | 45.0% | |
| ATTGGCAGCCAACTACTTAC+TGG | + | chr2.1:561910-561929 | MS.gene99949:CDS | 45.0% | |
| CAACAACTTATGGACATGGG+TGG | + | chr2.1:560348-560367 | MS.gene99949:CDS | 45.0% | |
| CCTGTTGTGGTATCTAATCC+AGG | + | chr2.1:561523-561542 | MS.gene99949:intron | 45.0% | |
| CGACAGAGGAATAGAGTGAA+AGG | - | chr2.1:557731-557750 | None:intergenic | 45.0% | |
| CTGTCTCATTGCCATGAGAA+AGG | + | chr2.1:559731-559750 | MS.gene99949:intron | 45.0% | |
| GAAGCAACATGTGAGAGAAG+CGG | - | chr2.1:558712-558731 | None:intergenic | 45.0% | |
| GACGACAGGATAGAGGTAAA+TGG | - | chr2.1:560221-560240 | None:intergenic | 45.0% | |
| GAGCCCCTAAAATGCTATAG+TGG | - | chr2.1:558451-558470 | None:intergenic | 45.0% | |
| GTGATGAATGTTGTCGACAG+AGG | - | chr2.1:557745-557764 | None:intergenic | 45.0% | |
| GTGATGTCTGAATGCAGTCA+GGG | - | chr2.1:559782-559801 | None:intergenic | 45.0% | |
| GTTGTGGCACCTACAAAGTA+TGG | + | chr2.1:559290-559309 | MS.gene99949:intron | 45.0% | |
| TACAACCCCAACTTAGGGTT+GGG | - | chr2.1:559672-559691 | None:intergenic | 45.0% | |
| TACCTATGACATGCAGCTAG+AGG | + | chr2.1:561826-561845 | MS.gene99949:intron | 45.0% | |
| TCAGCAATTGTTGTCCGCAT+GGG | - | chr2.1:557515-557534 | None:intergenic | 45.0% | |
| TCGAAAAAGAGCTGTAGCGA+TGG | + | chr2.1:557828-557847 | MS.gene99949:intron | 45.0% | |
| TCTATTGCAGCCTGTACTTC+AGG | + | chr2.1:561042-561061 | MS.gene99949:intron | 45.0% | |
| TGATAGAGCCTCTGTCATAG+AGG | + | chr2.1:561859-561878 | MS.gene99949:CDS | 45.0% | |
| TGCTGGAACTTCATCTACTC+AGG | + | chr2.1:559010-559029 | MS.gene99949:CDS | 45.0% | |
| TGTACTACAGGTGTGGAATC+TGG | - | chr2.1:559155-559174 | None:intergenic | 45.0% | |
| TGTGTGAGCAAGAACACAAC+AGG | - | chr2.1:558230-558249 | None:intergenic | 45.0% | |
| ! | ACAGCAATTTCTGCTGCTTC+AGG | - | chr2.1:560554-560573 | None:intergenic | 45.0% |
| ! | CCTGGATTAGATACCACAAC+AGG | - | chr2.1:561526-561545 | None:intergenic | 45.0% |
| ! | GGAAAATGCTGGGGATTTTG+AGG | + | chr2.1:561931-561950 | MS.gene99949:CDS | 45.0% |
| ! | GGGCTGAATTTTGCACTATC+AGG | + | chr2.1:557676-557695 | MS.gene99949:intron | 45.0% |
| ! | GTTTCAAGCATTGCGGACAA+TGG | + | chr2.1:560918-560937 | MS.gene99949:intron | 45.0% |
| !! | TCTGGTGTTGGCACAGTTAT+AGG | - | chr2.1:559137-559156 | None:intergenic | 45.0% |
| !! | TTACTTGGGTATTGAGCAGC+CGG | - | chr2.1:560578-560597 | None:intergenic | 45.0% |
| !!! | GAGGGTGACGTAGTGTTTTT+TGG | - | chr2.1:558872-558891 | None:intergenic | 45.0% |
| !!! | TTCTATTATAAATAATTTTT+CGG | + | chr2.1:561251-561270 | MS.gene99949:intron | 5.0% |
| ACAACCGGTATTGCTGACAG+CGG | - | chr2.1:558017-558036 | None:intergenic | 50.0% | |
| ACAGGTGTGGAATCTGGTGT+TGG | - | chr2.1:559149-559168 | None:intergenic | 50.0% | |
| AGCCTCTAGCTGCATGTCAT+AGG | - | chr2.1:561831-561850 | None:intergenic | 50.0% | |
| AGTAAAGCCTTGGGATCTGC+TGG | + | chr2.1:558993-559012 | MS.gene99949:CDS | 50.0% | |
| ATGTGGGTCCTACCAACAAG+TGG | - | chr2.1:561393-561412 | None:intergenic | 50.0% | |
| CAAACCGCTGTCAGCAATAC+CGG | + | chr2.1:558010-558029 | MS.gene99949:intron | 50.0% | |
| CAACTTATGGACATGGGTGG+TGG | + | chr2.1:560351-560370 | MS.gene99949:CDS | 50.0% | |
| CAAGCCAATAGACCAGGTCA+TGG | + | chr2.1:559559-559578 | MS.gene99949:intron | 50.0% | |
| CGCGTCCGCTATTAGGATTT+CGG | + | chr2.1:558056-558075 | MS.gene99949:intron | 50.0% | |
| CTAAATTGGCCCCAGAGAGA+GGG | - | chr2.1:558890-558909 | None:intergenic | 50.0% | |
| CTAGCAGAATAGTGTAGCCG+TGG | + | chr2.1:557959-557978 | MS.gene99949:intron | 50.0% | |
| CTGAGTCTGTACTACAGGTG+TGG | - | chr2.1:559162-559181 | None:intergenic | 50.0% | |
| CTTCTTGAGGAACAATCCCC+AGG | + | chr2.1:560820-560839 | MS.gene99949:CDS | 50.0% | |
| GACATGCAGCTAGAGGCTAT+GGG | + | chr2.1:561833-561852 | MS.gene99949:intron | 50.0% | |
| GAGCTCGGAAAGCAAAATCC+AGG | + | chr2.1:561064-561083 | MS.gene99949:CDS | 50.0% | |
| GCATTCCCTGTGGTTCGATT+AGG | - | chr2.1:560063-560082 | None:intergenic | 50.0% | |
| GGCGTCACATTAACAGCATG+AGG | - | chr2.1:561664-561683 | None:intergenic | 50.0% | |
| GTACAACCCCAACTTAGGGT+TGG | - | chr2.1:559673-559692 | None:intergenic | 50.0% | |
| TAAGGGCAAGCCAATAGACC+AGG | + | chr2.1:559553-559572 | MS.gene99949:intron | 50.0% | |
| TAATCCCAGACAGTGTCACG+TGG | - | chr2.1:558478-558497 | None:intergenic | 50.0% | |
| TATTGCTGACAGCGGTTTGC+AGG | - | chr2.1:558009-558028 | None:intergenic | 50.0% | |
| TCACTACCGGAGTTGTTCCT+GGG | + | chr2.1:560618-560637 | MS.gene99949:CDS | 50.0% | |
| TGAAGTTCCAGCAGATCCCA+AGG | - | chr2.1:559003-559022 | None:intergenic | 50.0% | |
| TGACATGCAGCTAGAGGCTA+TGG | + | chr2.1:561832-561851 | MS.gene99949:intron | 50.0% | |
| TGATGTTGGGACCCACTTGT+TGG | + | chr2.1:561378-561397 | MS.gene99949:intron | 50.0% | |
| TGGCTGCCAATTGCTCATCA+CGG | - | chr2.1:561901-561920 | None:intergenic | 50.0% | |
| TGTGGGTCCTACCAACAAGT+GGG | - | chr2.1:561392-561411 | None:intergenic | 50.0% | |
| TTCTGCCCAACCCTAAGTTG+GGG | + | chr2.1:559664-559683 | MS.gene99949:intron | 50.0% | |
| TTGAGGAACAATCCCCAGGT+AGG | + | chr2.1:560824-560843 | MS.gene99949:intron | 50.0% | |
| TTTCCGAGCTCCTGAAGTAC+AGG | - | chr2.1:561055-561074 | None:intergenic | 50.0% | |
| ! | AACCCATGGACGGTACTGAA+GGG | + | chr2.1:561140-561159 | MS.gene99949:CDS | 50.0% |
| ! | AGCACGAAGAGCACGATTGA+CGG | - | chr2.1:560394-560413 | None:intergenic | 50.0% |
| ! | CACAAGTCTGGCCTTTCTCA+TGG | - | chr2.1:559745-559764 | None:intergenic | 50.0% |
| ! | CTGGTTCGCTTGACTTCTTG+AGG | + | chr2.1:560807-560826 | MS.gene99949:CDS | 50.0% |
| ! | GTCAGCAATACCGGTTGTTG+CGG | + | chr2.1:558019-558038 | MS.gene99949:intron | 50.0% |
| ! | TTTGTAGGTGCCACAACTGC+AGG | - | chr2.1:559287-559306 | None:intergenic | 50.0% |
| !! | ACAATTTCTGGTGCTGGAGC+TGG | + | chr2.1:560782-560801 | MS.gene99949:CDS | 50.0% |
| !! | ATCCTAATAGCGGACGCGAT+AGG | - | chr2.1:558054-558073 | None:intergenic | 50.0% |
| !! | CAGGAGACAATTTCTGGTGC+TGG | + | chr2.1:560776-560795 | MS.gene99949:intron | 50.0% |
| !! | CGTTCAAAGCTCTGAAGGGA+AGG | + | chr2.1:559637-559656 | MS.gene99949:intron | 50.0% |
| !! | GGTGTTGGCACAGTTATAGG+TGG | - | chr2.1:559134-559153 | None:intergenic | 50.0% |
| !! | TCCTAATAGCGGACGCGATA+GGG | - | chr2.1:558053-558072 | None:intergenic | 50.0% |
| !!! | GGAGTTTGGTGCAACGCTTT+TGG | + | chr2.1:557983-558002 | MS.gene99949:intron | 50.0% |
| ACACTACGTCACCCTCTCTC+TGG | + | chr2.1:558876-558895 | MS.gene99949:intron | 55.0% | |
| ACTACGTCACCCTCTCTCTG+GGG | + | chr2.1:558878-558897 | MS.gene99949:intron | 55.0% | |
| AGCACCACGTGACACTGTCT+GGG | + | chr2.1:558471-558490 | MS.gene99949:intron | 55.0% | |
| CAACGCATCTCCTGCAGTTG+TGG | + | chr2.1:559274-559293 | MS.gene99949:CDS | 55.0% | |
| CACCCTTCAGTACCGTCCAT+GGG | - | chr2.1:561145-561164 | None:intergenic | 55.0% | |
| CACTACCGGAGTTGTTCCTG+GGG | + | chr2.1:560619-560638 | MS.gene99949:CDS | 55.0% | |
| CACTACGTCACCCTCTCTCT+GGG | + | chr2.1:558877-558896 | MS.gene99949:intron | 55.0% | |
| CAGCCTGTACTTCAGGAGCT+CGG | + | chr2.1:561049-561068 | MS.gene99949:intron | 55.0% | |
| CCTAAATTGGCCCCAGAGAG+AGG | - | chr2.1:558891-558910 | None:intergenic | 55.0% | |
| CGTTGCACCAAACTCCACCA+CGG | - | chr2.1:557979-557998 | None:intergenic | 55.0% | |
| GAAACAGGTGGGGTCACTAC+CGG | + | chr2.1:560605-560624 | MS.gene99949:CDS | 55.0% | |
| GCAGAATAGTGTAGCCGTGG+TGG | + | chr2.1:557962-557981 | MS.gene99949:intron | 55.0% | |
| GTCACTACCGGAGTTGTTCC+TGG | + | chr2.1:560617-560636 | MS.gene99949:CDS | 55.0% | |
| GTGACCCCACCTGTTTCAGT+TGG | - | chr2.1:560602-560621 | None:intergenic | 55.0% | |
| TAATGTGACGCCAGCTGAGC+AGG | + | chr2.1:561672-561691 | MS.gene99949:CDS | 55.0% | |
| TCACCCTTCAGTACCGTCCA+TGG | - | chr2.1:561146-561165 | None:intergenic | 55.0% | |
| TGAGCAGGAGGCAATCGGAA+GGG | + | chr2.1:561687-561706 | MS.gene99949:CDS | 55.0% | |
| ! | AGTGTAGCCGTGGTGGAGTT+TGG | + | chr2.1:557969-557988 | MS.gene99949:intron | 55.0% |
| ! | GAACCCATGGACGGTACTGA+AGG | + | chr2.1:561139-561158 | MS.gene99949:CDS | 55.0% |
| ! | GTTGGGACCCACTTGTTGGT+AGG | + | chr2.1:561382-561401 | MS.gene99949:intron | 55.0% |
| !! | CCTCTCTCTGGGGCCAATTT+AGG | + | chr2.1:558888-558907 | MS.gene99949:intron | 55.0% |
| AGGGACCCCAGGAACAACTC+CGG | - | chr2.1:560627-560646 | None:intergenic | 60.0% | |
| CAGCACCACGTGACACTGTC+TGG | + | chr2.1:558470-558489 | MS.gene99949:intron | 60.0% | |
| CCAGCTGAGCAGGAGGCAAT+CGG | + | chr2.1:561682-561701 | MS.gene99949:CDS | 60.0% | |
| CTGAGCAGGAGGCAATCGGA+AGG | + | chr2.1:561686-561705 | MS.gene99949:CDS | 60.0% | |
| GCCCTATCGCGTCCGCTATT+AGG | + | chr2.1:558049-558068 | MS.gene99949:intron | 60.0% | |
| GGCATTAGGGCCGCAACAAC+CGG | - | chr2.1:558032-558051 | None:intergenic | 60.0% | |
| ! | AGCGGACGCGATAGGGCATT+AGG | - | chr2.1:558046-558065 | None:intergenic | 60.0% |
| ! | GAGAAGCGGGCTCCAAATGC+AGG | - | chr2.1:558698-558717 | None:intergenic | 60.0% |
| ! | GCGGACGCGATAGGGCATTA+GGG | - | chr2.1:558045-558064 | None:intergenic | 60.0% |
| CCGATTGCCTCCTGCTCAGC+TGG | - | chr2.1:561685-561704 | None:intergenic | 65.0% | |
| GGAGACGAGTTAGGGACCCC+AGG | - | chr2.1:560638-560657 | None:intergenic | 65.0% | |
| TGTGACGCCAGCTGAGCAGG+AGG | + | chr2.1:561675-561694 | MS.gene99949:CDS | 65.0% | |
| ! | GGACATGGGTGGTGGCAGCT+GGG | + | chr2.1:560359-560378 | MS.gene99949:CDS | 65.0% |
| ! | TCTGGTGCTGGAGCTGGAGC+TGG | + | chr2.1:560788-560807 | MS.gene99949:CDS | 65.0% |
| ! | TGGACATGGGTGGTGGCAGC+TGG | + | chr2.1:560358-560377 | MS.gene99949:CDS | 65.0% |
| ! | GGGTGGTGGCAGCTGGGACA+GGG | + | chr2.1:560365-560384 | MS.gene99949:CDS | 70.0% |
| ! | TGGGTGGTGGCAGCTGGGAC+AGG | + | chr2.1:560364-560383 | MS.gene99949:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.1 | gene | 557296 | 561958 | 557296 | ID=MS.gene99949 |
| chr2.1 | mRNA | 557296 | 561958 | 557296 | ID=MS.gene99949.t1;Parent=MS.gene99949 |
| chr2.1 | exon | 557296 | 557361 | 557296 | ID=MS.gene99949.t1.exon1;Parent=MS.gene99949.t1 |
| chr2.1 | CDS | 557296 | 557361 | 557296 | ID=cds.MS.gene99949.t1;Parent=MS.gene99949.t1 |
| chr2.1 | exon | 557462 | 557623 | 557462 | ID=MS.gene99949.t1.exon2;Parent=MS.gene99949.t1 |
| chr2.1 | CDS | 557462 | 557623 | 557462 | ID=cds.MS.gene99949.t1;Parent=MS.gene99949.t1 |
| chr2.1 | exon | 558993 | 559031 | 558993 | ID=MS.gene99949.t1.exon3;Parent=MS.gene99949.t1 |
| chr2.1 | CDS | 558993 | 559031 | 558993 | ID=cds.MS.gene99949.t1;Parent=MS.gene99949.t1 |
| chr2.1 | exon | 559119 | 559180 | 559119 | ID=MS.gene99949.t1.exon4;Parent=MS.gene99949.t1 |
| chr2.1 | CDS | 559119 | 559180 | 559119 | ID=cds.MS.gene99949.t1;Parent=MS.gene99949.t1 |
| chr2.1 | exon | 559262 | 559306 | 559262 | ID=MS.gene99949.t1.exon5;Parent=MS.gene99949.t1 |
| chr2.1 | CDS | 559262 | 559306 | 559262 | ID=cds.MS.gene99949.t1;Parent=MS.gene99949.t1 |
| chr2.1 | exon | 560278 | 560455 | 560278 | ID=MS.gene99949.t1.exon6;Parent=MS.gene99949.t1 |
| chr2.1 | CDS | 560278 | 560455 | 560278 | ID=cds.MS.gene99949.t1;Parent=MS.gene99949.t1 |
| chr2.1 | exon | 560545 | 560676 | 560545 | ID=MS.gene99949.t1.exon7;Parent=MS.gene99949.t1 |
| chr2.1 | CDS | 560545 | 560676 | 560545 | ID=cds.MS.gene99949.t1;Parent=MS.gene99949.t1 |
| chr2.1 | exon | 560779 | 560841 | 560779 | ID=MS.gene99949.t1.exon8;Parent=MS.gene99949.t1 |
| chr2.1 | CDS | 560779 | 560841 | 560779 | ID=cds.MS.gene99949.t1;Parent=MS.gene99949.t1 |
| chr2.1 | exon | 560919 | 560966 | 560919 | ID=MS.gene99949.t1.exon9;Parent=MS.gene99949.t1 |
| chr2.1 | CDS | 560919 | 560966 | 560919 | ID=cds.MS.gene99949.t1;Parent=MS.gene99949.t1 |
| chr2.1 | exon | 561052 | 561161 | 561052 | ID=MS.gene99949.t1.exon10;Parent=MS.gene99949.t1 |
| chr2.1 | CDS | 561052 | 561161 | 561052 | ID=cds.MS.gene99949.t1;Parent=MS.gene99949.t1 |
| chr2.1 | exon | 561630 | 561708 | 561630 | ID=MS.gene99949.t1.exon11;Parent=MS.gene99949.t1 |
| chr2.1 | CDS | 561630 | 561708 | 561630 | ID=cds.MS.gene99949.t1;Parent=MS.gene99949.t1 |
| chr2.1 | exon | 561842 | 561958 | 561842 | ID=MS.gene99949.t1.exon12;Parent=MS.gene99949.t1 |
| chr2.1 | CDS | 561842 | 561958 | 561842 | ID=cds.MS.gene99949.t1;Parent=MS.gene99949.t1 |
| Gene Sequence |
| Protein sequence |
