Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76398.t1 | XP_003629450.1 | 98 | 244 | 4 | 1 | 1 | 243 | 1 | 244 | 1.10E-127 | 466.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76398.t1 | D3YWP0 | 27.7 | 191 | 114 | 5 | 46 | 236 | 51 | 217 | 1.4e-11 | 71.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76398.t1 | G7LES3 | 98.0 | 244 | 4 | 1 | 1 | 243 | 1 | 244 | 7.6e-128 | 466.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050170 | MS.gene76398 | -0.813178 | 2.92E-51 | -1.69E-46 |
| MS.gene051439 | MS.gene76398 | 0.836506 | 8.99E-57 | -1.69E-46 |
| MS.gene05589 | MS.gene76398 | -0.803656 | 3.14E-49 | -1.69E-46 |
| MS.gene056387 | MS.gene76398 | -0.826184 | 3.12E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76398.t1 | MTR_8g077610 | 97.951 | 244 | 4 | 1 | 1 | 243 | 1 | 244 | 6.61e-177 | 486 |
| MS.gene76398.t1 | MTR_4g057605 | 38.000 | 100 | 57 | 2 | 86 | 181 | 67 | 165 | 1.64e-15 | 75.9 |
| MS.gene76398.t1 | MTR_6g068940 | 35.878 | 131 | 82 | 2 | 86 | 216 | 115 | 243 | 2.42e-14 | 71.2 |
| MS.gene76398.t1 | MTR_2g090740 | 26.286 | 175 | 121 | 4 | 51 | 222 | 33 | 202 | 9.29e-14 | 68.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76398.t1 | AT5G49560 | 63.636 | 220 | 77 | 2 | 25 | 241 | 45 | 264 | 1.71e-96 | 284 |
| MS.gene76398.t1 | AT3G50850 | 60.000 | 225 | 81 | 2 | 25 | 240 | 23 | 247 | 1.00e-87 | 261 |
| MS.gene76398.t1 | AT1G08125 | 40.594 | 101 | 54 | 2 | 86 | 181 | 74 | 173 | 4.68e-14 | 70.9 |
| MS.gene76398.t1 | AT1G08125 | 40.594 | 101 | 54 | 2 | 86 | 181 | 67 | 166 | 5.90e-14 | 70.5 |
| MS.gene76398.t1 | AT1G73320 | 34.351 | 131 | 84 | 2 | 86 | 216 | 148 | 276 | 2.41e-13 | 68.9 |
| MS.gene76398.t1 | AT4G35987 | 34.375 | 128 | 68 | 5 | 86 | 211 | 130 | 243 | 5.21e-12 | 65.1 |
| MS.gene76398.t1 | AT5G44170 | 31.452 | 124 | 80 | 3 | 86 | 208 | 72 | 191 | 8.90e-11 | 60.8 |
Find 94 sgRNAs with CRISPR-Local
Find 108 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTGTATCATGATCATCTTTA+TGG | 0.232940 | 8.1:-30251113 | MS.gene76398:CDS |
| CGACATGAGGGAGGTCGGTT+AGG | 0.297469 | 8.1:+30251285 | None:intergenic |
| TGTACAAGATTCGTTGAATC+TGG | 0.321018 | 8.1:-30250772 | MS.gene76398:CDS |
| TCATATGAAGAGATGGAAAA+AGG | 0.321690 | 8.1:-30251030 | MS.gene76398:CDS |
| TGGTGGTGGGGTTGAGGCGG+TGG | 0.326124 | 8.1:+30251423 | None:intergenic |
| TTGGGTTGTACGGTGGGGAA+TGG | 0.341746 | 8.1:+30251584 | None:intergenic |
| AATGGGTTTGAAGGAGTTCT+TGG | 0.345925 | 8.1:+30251552 | None:intergenic |
| AGTTCTTGGTTGAGTAGGTT+GGG | 0.368518 | 8.1:+30251566 | None:intergenic |
| TGGGTTGTACGGTGGGGAAT+GGG | 0.368720 | 8.1:+30251585 | None:intergenic |
| AAGGCCTCTCCTTCCAGCTC+TGG | 0.374151 | 8.1:-30251481 | MS.gene76398:CDS |
| ATTGGATCGAATGGAGGAAA+TGG | 0.384082 | 8.1:+30251534 | None:intergenic |
| CATGTTGATGCTCCTTGTAA+TGG | 0.391114 | 8.1:-30250957 | MS.gene76398:CDS |
| GACCGTTGATTGAAACGTTA+AGG | 0.398670 | 8.1:-30251091 | MS.gene76398:CDS |
| TTCCGCGTTGAATTTGAGAT+TGG | 0.401989 | 8.1:+30251259 | None:intergenic |
| GGCTGGTGGTGGGGTTGAGG+CGG | 0.411611 | 8.1:+30251420 | None:intergenic |
| AGTAGGTTGGGTTGTACGGT+GGG | 0.414443 | 8.1:+30251578 | None:intergenic |
| GGTGACGAGTGAGGTGGCGG+CGG | 0.423943 | 8.1:+30251457 | None:intergenic |
| AAGGTTGATGTTGATTAAGA+AGG | 0.425856 | 8.1:-30251072 | MS.gene76398:CDS |
| TTGGATCGAATGGAGGAAAT+GGG | 0.432200 | 8.1:+30251535 | None:intergenic |
| AGCGAATGGTGACCGTTGAT+TGG | 0.435836 | 8.1:+30251516 | None:intergenic |
| GGGATGAGAGGACGGTTGAG+AGG | 0.439294 | 8.1:+30251396 | None:intergenic |
| GAGTTCTTGGTTGAGTAGGT+TGG | 0.443611 | 8.1:+30251565 | None:intergenic |
| AGGTGGCGGCGGGCCAGAGC+TGG | 0.444077 | 8.1:+30251468 | None:intergenic |
| GAAGGAGTTCTTGGTTGAGT+AGG | 0.446258 | 8.1:+30251561 | None:intergenic |
| CTCGAACTCGGCTCCGGCAC+CGG | 0.450903 | 8.1:-30251353 | MS.gene76398:CDS |
| TACATTTGCATCCCTTAGGT+GGG | 0.451205 | 8.1:-30251198 | MS.gene76398:CDS |
| TGCGACTATGCCGACGATGC+CGG | 0.452730 | 8.1:+30251334 | None:intergenic |
| GACATGAGGGAGGTCGGTTA+GGG | 0.453142 | 8.1:+30251286 | None:intergenic |
| GAATGGGTTTGTTTCTTCGT+CGG | 0.457936 | 8.1:+30251601 | None:intergenic |
| TCCGCGTTGAATTTGAGATT+GGG | 0.458899 | 8.1:+30251260 | None:intergenic |
| GAGTAGGTTGGGTTGTACGG+TGG | 0.459911 | 8.1:+30251577 | None:intergenic |
| AATGGAGGAAATGGGTTTGA+AGG | 0.462469 | 8.1:+30251543 | None:intergenic |
| GTTGAGTAGGTTGGGTTGTA+CGG | 0.470395 | 8.1:+30251574 | None:intergenic |
| GTGTTACATTTGCATCCCTT+AGG | 0.471445 | 8.1:-30251202 | MS.gene76398:CDS |
| GAGGGTGACGAGTGAGGTGG+CGG | 0.476023 | 8.1:+30251454 | None:intergenic |
| CCTTGTAATGGTTCTAGAGT+TGG | 0.477461 | 8.1:-30250945 | MS.gene76398:CDS |
| GCTGCTGACGTGGAAATGAT+TGG | 0.487077 | 8.1:-30251170 | MS.gene76398:CDS |
| GTGACGAGTGAGGTGGCGGC+GGG | 0.493471 | 8.1:+30251458 | None:intergenic |
| GGATGAGAGGACGGTTGAGA+GGG | 0.493620 | 8.1:+30251397 | None:intergenic |
| TTACATTTGCATCCCTTAGG+TGG | 0.512061 | 8.1:-30251199 | MS.gene76398:CDS |
| CGGTGCCGGAGCCGAGTTCG+AGG | 0.513484 | 8.1:+30251354 | None:intergenic |
| CGGGCCAGAGCTGGAAGGAG+AGG | 0.519207 | 8.1:+30251477 | None:intergenic |
| TGGAAGGAGAGGCCTTGAGA+TGG | 0.521003 | 8.1:+30251488 | None:intergenic |
| GGCTCCGGCACCGGCATCGT+CGG | 0.521008 | 8.1:-30251344 | MS.gene76398:CDS |
| GGAAGGAGAGGCCTTGAGAT+GGG | 0.521070 | 8.1:+30251489 | None:intergenic |
| AACCTTAACGTTTCAATCAA+CGG | 0.521759 | 8.1:+30251089 | None:intergenic |
| CAGCAGCATGACCCCACCTA+AGG | 0.524506 | 8.1:+30251186 | None:intergenic |
| ACATTTGCATCCCTTAGGTG+GGG | 0.525685 | 8.1:-30251197 | MS.gene76398:CDS |
| TGAGGCGGTGGTTGTCGAGG+AGG | 0.527890 | 8.1:+30251435 | None:intergenic |
| CGCATCCTCGAACTCGGCTC+CGG | 0.529068 | 8.1:-30251359 | MS.gene76398:CDS |
| TTGAGATTGGGAACGACATG+AGG | 0.538585 | 8.1:+30251272 | None:intergenic |
| TATGCCGACGATGCCGGTGC+CGG | 0.538683 | 8.1:+30251340 | None:intergenic |
| GGTTGAGGCGGTGGTTGTCG+AGG | 0.542097 | 8.1:+30251432 | None:intergenic |
| GGAAGCTAATGCAGAAGCTG+TGG | 0.551048 | 8.1:-30251240 | MS.gene76398:CDS |
| GGATGCGTGGTGGAGTGTGG+AGG | 0.551752 | 8.1:+30251375 | None:intergenic |
| GGTTACGTTTGTTCCGAGTG+TGG | 0.553433 | 8.1:+30251307 | None:intergenic |
| GAGGCGGTGGTTGTCGAGGA+GGG | 0.554323 | 8.1:+30251436 | None:intergenic |
| AGTGTGGAGGGATGAGAGGA+CGG | 0.557662 | 8.1:+30251388 | None:intergenic |
| GTACAAGATTCGTTGAATCT+GGG | 0.558147 | 8.1:-30250771 | MS.gene76398:CDS |
| GCAGAAGCTGTGGGGTCCAA+CGG | 0.558756 | 8.1:-30251230 | MS.gene76398:CDS |
| GAAGCTAATGCAGAAGCTGT+GGG | 0.560553 | 8.1:-30251239 | MS.gene76398:CDS |
| GTAGGTTGGGTTGTACGGTG+GGG | 0.565929 | 8.1:+30251579 | None:intergenic |
| AGCAGCATGACCCCACCTAA+GGG | 0.580922 | 8.1:+30251187 | None:intergenic |
| CGAGGATGCGTGGTGGAGTG+TGG | 0.584139 | 8.1:+30251372 | None:intergenic |
| GATGCGTGGTGGAGTGTGGA+GGG | 0.585713 | 8.1:+30251376 | None:intergenic |
| ATGAGAGGACGGTTGAGAGG+GGG | 0.592476 | 8.1:+30251399 | None:intergenic |
| ATAGTCGCAGCCGCCACACT+CGG | 0.593103 | 8.1:-30251320 | MS.gene76398:CDS |
| GTGGAGTGTGGAGGGATGAG+AGG | 0.594192 | 8.1:+30251384 | None:intergenic |
| TGATGGCTCATATGAAGAGA+TGG | 0.595555 | 8.1:-30251037 | MS.gene76398:CDS |
| CCTCCATTCGATCCAATCAA+CGG | 0.598452 | 8.1:-30251528 | MS.gene76398:CDS |
| GAAGGAGATTGTGTTTGTGA+TGG | 0.598982 | 8.1:-30251054 | MS.gene76398:CDS |
| CCACCACGCATCCTCGAACT+CGG | 0.602197 | 8.1:-30251365 | MS.gene76398:CDS |
| GGCGGCGGGCCAGAGCTGGA+AGG | 0.605814 | 8.1:+30251472 | None:intergenic |
| GTCGAGGAGGGTGACGAGTG+AGG | 0.606864 | 8.1:+30251448 | None:intergenic |
| CCAACTCTAGAACCATTACA+AGG | 0.607697 | 8.1:+30250945 | None:intergenic |
| TACGTTTGTTCCGAGTGTGG+CGG | 0.608058 | 8.1:+30251310 | None:intergenic |
| TGACCGTTGATTGGATCGAA+TGG | 0.614537 | 8.1:+30251525 | None:intergenic |
| GGGAACGACATGAGGGAGGT+CGG | 0.619817 | 8.1:+30251280 | None:intergenic |
| CCGTTGATTGGATCGAATGG+AGG | 0.620603 | 8.1:+30251528 | None:intergenic |
| GTGGGGTCATGCTGCTGACG+TGG | 0.622445 | 8.1:-30251180 | MS.gene76398:CDS |
| GATGAGAGGACGGTTGAGAG+GGG | 0.622586 | 8.1:+30251398 | None:intergenic |
| TGAGATTGGGAACGACATGA+GGG | 0.626581 | 8.1:+30251273 | None:intergenic |
| GAGCCGAGTTCGAGGATGCG+TGG | 0.630016 | 8.1:+30251362 | None:intergenic |
| AAATGTAACACTACCACCGT+TGG | 0.630967 | 8.1:+30251214 | None:intergenic |
| ATTCGCTTACTCCCATCTCA+AGG | 0.634097 | 8.1:-30251500 | MS.gene76398:CDS |
| GCTGACGTGGAAATGATTGG+AGG | 0.636522 | 8.1:-30251167 | MS.gene76398:CDS |
| TTGAGATGGGAGTAAGCGAA+TGG | 0.643450 | 8.1:+30251502 | None:intergenic |
| GAGGAGGGTGACGAGTGAGG+TGG | 0.661685 | 8.1:+30251451 | None:intergenic |
| CCGAGTTCGAGGATGCGTGG+TGG | 0.663217 | 8.1:+30251365 | None:intergenic |
| GAAGCTGTGGGGTCCAACGG+TGG | 0.664465 | 8.1:-30251227 | MS.gene76398:CDS |
| TGTTGTGATAGCTTCAGATG+TGG | 0.670595 | 8.1:-30251135 | MS.gene76398:CDS |
| GATTGGGAACGACATGAGGG+AGG | 0.688587 | 8.1:+30251276 | None:intergenic |
| AAGCTAATGCAGAAGCTGTG+GGG | 0.711870 | 8.1:-30251238 | MS.gene76398:CDS |
| TCCCAATCTCAAATTCAACG+CGG | 0.795443 | 8.1:-30251261 | MS.gene76398:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAACAAATATAAACTTGAAA+TGG | + | chr8.1:30251507-30251526 | None:intergenic | 15.0% |
| !! | CAAGTTTATATTTGTTTGTT+TGG | - | chr8.1:30251510-30251529 | MS.gene76398:CDS | 20.0% |
| !!! | TTTTGTTAATTTTCCAAATC+AGG | - | chr8.1:30251576-30251595 | MS.gene76398:CDS | 20.0% |
| !! | TATTTGTTTGTTTGGTTCAT+TGG | - | chr8.1:30251518-30251537 | MS.gene76398:CDS | 25.0% |
| !!! | GTTTGTTTTTTAAGAAAGCT+AGG | - | chr8.1:30251369-30251388 | MS.gene76398:CDS | 25.0% |
| !!! | TTGTTGTTTATCGTTTTGTT+GGG | - | chr8.1:30251453-30251472 | MS.gene76398:CDS | 25.0% |
| AACCTTAACGTTTCAATCAA+CGG | + | chr8.1:30251287-30251306 | None:intergenic | 30.0% | |
| AATCTTGTACATACCTGATT+TGG | + | chr8.1:30251592-30251611 | None:intergenic | 30.0% | |
| GTGTATCATGATCATCTTTA+TGG | - | chr8.1:30251260-30251279 | MS.gene76398:CDS | 30.0% | |
| TCATATGAAGAGATGGAAAA+AGG | - | chr8.1:30251343-30251362 | MS.gene76398:CDS | 30.0% | |
| !! | AAGGTTGATGTTGATTAAGA+AGG | - | chr8.1:30251301-30251320 | MS.gene76398:CDS | 30.0% |
| !!! | GTTGTTGTTTATCGTTTTGT+TGG | - | chr8.1:30251452-30251471 | MS.gene76398:CDS | 30.0% |
| GTACAAGATTCGTTGAATCT+GGG | - | chr8.1:30251602-30251621 | MS.gene76398:CDS | 35.0% | |
| TGTACAAGATTCGTTGAATC+TGG | - | chr8.1:30251601-30251620 | MS.gene76398:CDS | 35.0% | |
| AAATGTAACACTACCACCGT+TGG | + | chr8.1:30251162-30251181 | None:intergenic | 40.0% | |
| AGTTCTTGGTTGAGTAGGTT+GGG | + | chr8.1:30250810-30250829 | None:intergenic | 40.0% | |
| ATTGGATCGAATGGAGGAAA+TGG | + | chr8.1:30250842-30250861 | None:intergenic | 40.0% | |
| CATGTTGATGCTCCTTGTAA+TGG | - | chr8.1:30251416-30251435 | MS.gene76398:CDS | 40.0% | |
| GAAGGAGATTGTGTTTGTGA+TGG | - | chr8.1:30251319-30251338 | MS.gene76398:CDS | 40.0% | |
| GTGTTACATTTGCATCCCTT+AGG | - | chr8.1:30251171-30251190 | MS.gene76398:CDS | 40.0% | |
| TACATTTGCATCCCTTAGGT+GGG | - | chr8.1:30251175-30251194 | MS.gene76398:CDS | 40.0% | |
| TCCCAATCTCAAATTCAACG+CGG | - | chr8.1:30251112-30251131 | MS.gene76398:CDS | 40.0% | |
| TGATGGCTCATATGAAGAGA+TGG | - | chr8.1:30251336-30251355 | MS.gene76398:CDS | 40.0% | |
| TGTTGTGATAGCTTCAGATG+TGG | - | chr8.1:30251238-30251257 | MS.gene76398:CDS | 40.0% | |
| TTACATTTGCATCCCTTAGG+TGG | - | chr8.1:30251174-30251193 | MS.gene76398:CDS | 40.0% | |
| TTGGATCGAATGGAGGAAAT+GGG | + | chr8.1:30250841-30250860 | None:intergenic | 40.0% | |
| ! | AATGGAGGAAATGGGTTTGA+AGG | + | chr8.1:30250833-30250852 | None:intergenic | 40.0% |
| ! | AATGGGTTTGAAGGAGTTCT+TGG | + | chr8.1:30250824-30250843 | None:intergenic | 40.0% |
| ! | GAATGGGTTTGTTTCTTCGT+CGG | + | chr8.1:30250775-30250794 | None:intergenic | 40.0% |
| ! | GACCGTTGATTGAAACGTTA+AGG | - | chr8.1:30251282-30251301 | MS.gene76398:CDS | 40.0% |
| ! | TCCGCGTTGAATTTGAGATT+GGG | + | chr8.1:30251116-30251135 | None:intergenic | 40.0% |
| ! | TTCCGCGTTGAATTTGAGAT+TGG | + | chr8.1:30251117-30251136 | None:intergenic | 40.0% |
| !! | CCAACTCTAGAACCATTACA+AGG | + | chr8.1:30251431-30251450 | None:intergenic | 40.0% |
| !! | CCTTGTAATGGTTCTAGAGT+TGG | - | chr8.1:30251428-30251447 | MS.gene76398:CDS | 40.0% |
| AAGCTAATGCAGAAGCTGTG+GGG | - | chr8.1:30251135-30251154 | MS.gene76398:CDS | 45.0% | |
| ACATTTGCATCCCTTAGGTG+GGG | - | chr8.1:30251176-30251195 | MS.gene76398:CDS | 45.0% | |
| ATTCGCTTACTCCCATCTCA+AGG | - | chr8.1:30250873-30250892 | MS.gene76398:intron | 45.0% | |
| CCTCCATTCGATCCAATCAA+CGG | - | chr8.1:30250845-30250864 | MS.gene76398:intron | 45.0% | |
| GAAGCTAATGCAGAAGCTGT+GGG | - | chr8.1:30251134-30251153 | MS.gene76398:CDS | 45.0% | |
| GAAGGAGTTCTTGGTTGAGT+AGG | + | chr8.1:30250815-30250834 | None:intergenic | 45.0% | |
| GAGTTCTTGGTTGAGTAGGT+TGG | + | chr8.1:30250811-30250830 | None:intergenic | 45.0% | |
| TGAGATTGGGAACGACATGA+GGG | + | chr8.1:30251103-30251122 | None:intergenic | 45.0% | |
| TTGAGATGGGAGTAAGCGAA+TGG | + | chr8.1:30250874-30250893 | None:intergenic | 45.0% | |
| TTGAGATTGGGAACGACATG+AGG | + | chr8.1:30251104-30251123 | None:intergenic | 45.0% | |
| ! | GTTGAGTAGGTTGGGTTGTA+CGG | + | chr8.1:30250802-30250821 | None:intergenic | 45.0% |
| ! | TGACCGTTGATTGGATCGAA+TGG | + | chr8.1:30250851-30250870 | None:intergenic | 45.0% |
| AGCGAATGGTGACCGTTGAT+TGG | + | chr8.1:30250860-30250879 | None:intergenic | 50.0% | |
| GCTGACGTGGAAATGATTGG+AGG | - | chr8.1:30251206-30251225 | MS.gene76398:CDS | 50.0% | |
| GCTGCTGACGTGGAAATGAT+TGG | - | chr8.1:30251203-30251222 | MS.gene76398:CDS | 50.0% | |
| GGAAGCTAATGCAGAAGCTG+TGG | - | chr8.1:30251133-30251152 | MS.gene76398:CDS | 50.0% | |
| GGTTACGTTTGTTCCGAGTG+TGG | + | chr8.1:30251069-30251088 | None:intergenic | 50.0% | |
| TACGTTTGTTCCGAGTGTGG+CGG | + | chr8.1:30251066-30251085 | None:intergenic | 50.0% | |
| ! | AGTAGGTTGGGTTGTACGGT+GGG | + | chr8.1:30250798-30250817 | None:intergenic | 50.0% |
| ! | CCGTTGATTGGATCGAATGG+AGG | + | chr8.1:30250848-30250867 | None:intergenic | 50.0% |
| AGCAGCATGACCCCACCTAA+GGG | + | chr8.1:30251189-30251208 | None:intergenic | 55.0% | |
| AGTGTGGAGGGATGAGAGGA+CGG | + | chr8.1:30250988-30251007 | None:intergenic | 55.0% | |
| ATGAGAGGACGGTTGAGAGG+GGG | + | chr8.1:30250977-30250996 | None:intergenic | 55.0% | |
| GACATGAGGGAGGTCGGTTA+GGG | + | chr8.1:30251090-30251109 | None:intergenic | 55.0% | |
| GATGAGAGGACGGTTGAGAG+GGG | + | chr8.1:30250978-30250997 | None:intergenic | 55.0% | |
| GATTGGGAACGACATGAGGG+AGG | + | chr8.1:30251100-30251119 | None:intergenic | 55.0% | |
| GGAAGGAGAGGCCTTGAGAT+GGG | + | chr8.1:30250887-30250906 | None:intergenic | 55.0% | |
| GGATGAGAGGACGGTTGAGA+GGG | + | chr8.1:30250979-30250998 | None:intergenic | 55.0% | |
| TGGAAGGAGAGGCCTTGAGA+TGG | + | chr8.1:30250888-30250907 | None:intergenic | 55.0% | |
| TGGGTTGTACGGTGGGGAAT+GGG | + | chr8.1:30250791-30250810 | None:intergenic | 55.0% | |
| ! | GAGTAGGTTGGGTTGTACGG+TGG | + | chr8.1:30250799-30250818 | None:intergenic | 55.0% |
| ! | GTAGGTTGGGTTGTACGGTG+GGG | + | chr8.1:30250797-30250816 | None:intergenic | 55.0% |
| ! | TTGGGTTGTACGGTGGGGAA+TGG | + | chr8.1:30250792-30250811 | None:intergenic | 55.0% |
| AAGGCCTCTCCTTCCAGCTC+TGG | - | chr8.1:30250892-30250911 | MS.gene76398:intron | 60.0% | |
| ATAGTCGCAGCCGCCACACT+CGG | - | chr8.1:30251053-30251072 | MS.gene76398:CDS | 60.0% | |
| CAGCAGCATGACCCCACCTA+AGG | + | chr8.1:30251190-30251209 | None:intergenic | 60.0% | |
| CCACCACGCATCCTCGAACT+CGG | - | chr8.1:30251008-30251027 | MS.gene76398:CDS | 60.0% | |
| CGACATGAGGGAGGTCGGTT+AGG | + | chr8.1:30251091-30251110 | None:intergenic | 60.0% | |
| GCAGAAGCTGTGGGGTCCAA+CGG | - | chr8.1:30251143-30251162 | MS.gene76398:CDS | 60.0% | |
| GGGAACGACATGAGGGAGGT+CGG | + | chr8.1:30251096-30251115 | None:intergenic | 60.0% | |
| GGGATGAGAGGACGGTTGAG+AGG | + | chr8.1:30250980-30250999 | None:intergenic | 60.0% | |
| GTGGAGTGTGGAGGGATGAG+AGG | + | chr8.1:30250992-30251011 | None:intergenic | 60.0% | |
| TGCGACTATGCCGACGATGC+CGG | + | chr8.1:30251042-30251061 | None:intergenic | 60.0% | |
| ! | GATGCGTGGTGGAGTGTGGA+GGG | + | chr8.1:30251000-30251019 | None:intergenic | 60.0% |
| CCGAGTTCGAGGATGCGTGG+TGG | + | chr8.1:30251011-30251030 | None:intergenic | 65.0% | |
| CGCATCCTCGAACTCGGCTC+CGG | - | chr8.1:30251014-30251033 | MS.gene76398:CDS | 65.0% | |
| GAAGCTGTGGGGTCCAACGG+TGG | - | chr8.1:30251146-30251165 | MS.gene76398:CDS | 65.0% | |
| GAGCCGAGTTCGAGGATGCG+TGG | + | chr8.1:30251014-30251033 | None:intergenic | 65.0% | |
| GAGGAGGGTGACGAGTGAGG+TGG | + | chr8.1:30250925-30250944 | None:intergenic | 65.0% | |
| GAGGCGGTGGTTGTCGAGGA+GGG | + | chr8.1:30250940-30250959 | None:intergenic | 65.0% | |
| GAGGGTGACGAGTGAGGTGG+CGG | + | chr8.1:30250922-30250941 | None:intergenic | 65.0% | |
| GGTTGAGGCGGTGGTTGTCG+AGG | + | chr8.1:30250944-30250963 | None:intergenic | 65.0% | |
| GTCGAGGAGGGTGACGAGTG+AGG | + | chr8.1:30250928-30250947 | None:intergenic | 65.0% | |
| GTGGGGTCATGCTGCTGACG+TGG | - | chr8.1:30251193-30251212 | MS.gene76398:CDS | 65.0% | |
| TATGCCGACGATGCCGGTGC+CGG | + | chr8.1:30251036-30251055 | None:intergenic | 65.0% | |
| TGAGGCGGTGGTTGTCGAGG+AGG | + | chr8.1:30250941-30250960 | None:intergenic | 65.0% | |
| ! | CGAGGATGCGTGGTGGAGTG+TGG | + | chr8.1:30251004-30251023 | None:intergenic | 65.0% |
| ! | GGATGCGTGGTGGAGTGTGG+AGG | + | chr8.1:30251001-30251020 | None:intergenic | 65.0% |
| ! | GTTGAGAGGGGGCTGGTGGT+GGG | + | chr8.1:30250966-30250985 | None:intergenic | 65.0% |
| ! | TTGAGAGGGGGCTGGTGGTG+GGG | + | chr8.1:30250965-30250984 | None:intergenic | 65.0% |
| CGGGCCAGAGCTGGAAGGAG+AGG | + | chr8.1:30250899-30250918 | None:intergenic | 70.0% | |
| CTCGAACTCGGCTCCGGCAC+CGG | - | chr8.1:30251020-30251039 | MS.gene76398:CDS | 70.0% | |
| GACGGTTGAGAGGGGGCTGG+TGG | + | chr8.1:30250970-30250989 | None:intergenic | 70.0% | |
| GAGGACGGTTGAGAGGGGGC+TGG | + | chr8.1:30250973-30250992 | None:intergenic | 70.0% | |
| ! | GGTGACGAGTGAGGTGGCGG+CGG | + | chr8.1:30250919-30250938 | None:intergenic | 70.0% |
| ! | GGTTGAGAGGGGGCTGGTGG+TGG | + | chr8.1:30250967-30250986 | None:intergenic | 70.0% |
| ! | GTGACGAGTGAGGTGGCGGC+GGG | + | chr8.1:30250918-30250937 | None:intergenic | 70.0% |
| !! | GGCTGGTGGTGGGGTTGAGG+CGG | + | chr8.1:30250956-30250975 | None:intergenic | 70.0% |
| !! | TGGTGGTGGGGTTGAGGCGG+TGG | + | chr8.1:30250953-30250972 | None:intergenic | 70.0% |
| ! | CGGTGCCGGAGCCGAGTTCG+AGG | + | chr8.1:30251022-30251041 | None:intergenic | 75.0% |
| !! | GGCTCCGGCACCGGCATCGT+CGG | - | chr8.1:30251029-30251048 | MS.gene76398:CDS | 75.0% |
| !! | GGGGGCTGGTGGTGGGGTTG+AGG | + | chr8.1:30250959-30250978 | None:intergenic | 75.0% |
| ! | GGCGGCGGGCCAGAGCTGGA+AGG | + | chr8.1:30250904-30250923 | None:intergenic | 80.0% |
| !! | AGGTGGCGGCGGGCCAGAGC+TGG | + | chr8.1:30250908-30250927 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 30250759 | 30251636 | 30250759 | ID=MS.gene76398 |
| chr8.1 | mRNA | 30250759 | 30251636 | 30250759 | ID=MS.gene76398.t1;Parent=MS.gene76398 |
| chr8.1 | exon | 30250911 | 30251636 | 30250911 | ID=MS.gene76398.t1.exon1;Parent=MS.gene76398.t1 |
| chr8.1 | CDS | 30250911 | 30251636 | 30250911 | ID=cds.MS.gene76398.t1;Parent=MS.gene76398.t1 |
| chr8.1 | exon | 30250759 | 30250797 | 30250759 | ID=MS.gene76398.t1.exon2;Parent=MS.gene76398.t1 |
| chr8.1 | CDS | 30250759 | 30250797 | 30250759 | ID=cds.MS.gene76398.t1;Parent=MS.gene76398.t1 |
| Gene Sequence |
| Protein sequence |
