AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene76499


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene76499.t1 MTR_2g101830 94.559 533 10 1 1 514 1 533 0.0 1038
MS.gene76499.t1 MTR_4g013165 77.667 403 81 3 118 514 1 400 0.0 644
MS.gene76499.t1 MTR_6g087700 58.571 560 175 13 1 514 1 549 0.0 594
MS.gene76499.t1 MTR_7g065220 52.957 372 155 4 66 418 183 553 3.42e-137 411
MS.gene76499.t1 MTR_4g075640 54.521 365 145 6 67 413 87 448 5.27e-134 400
MS.gene76499.t1 MTR_3g069590 50.407 369 164 4 68 418 101 468 1.34e-130 392
MS.gene76499.t1 MTR_4g019770 48.485 396 180 5 46 418 66 460 2.31e-128 385
MS.gene76499.t1 MTR_5g081410 51.087 368 161 6 69 418 84 450 2.31e-127 383
MS.gene76499.t1 MTR_8g030850 45.758 389 185 6 55 418 83 470 1.57e-119 360
MS.gene76499.t1 MTR_3g069590 49.398 332 149 4 68 381 101 431 6.66e-114 344
MS.gene76499.t1 MTR_7g077690 41.412 425 182 5 60 418 106 529 5.62e-108 332
MS.gene76499.t1 MTR_5g025960 45.833 360 184 5 63 413 114 471 2.85e-105 326
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene76499.t1 AT1G79860 65.009 543 133 12 1 514 1 515 0.0 660
MS.gene76499.t1 AT1G52240 59.353 556 170 10 1 514 1 542 0.0 617
MS.gene76499.t1 AT3G24620 56.204 548 157 12 14 514 12 523 0.0 552
MS.gene76499.t1 AT4G13240 56.597 523 182 8 17 514 15 517 0.0 548
MS.gene76499.t1 AT3G16130 51.927 545 218 11 1 512 1 534 3.57e-178 512
MS.gene76499.t1 AT5G19560 55.138 506 211 8 17 514 15 512 1.41e-175 504
MS.gene76499.t1 AT5G19560 55.090 501 209 8 22 514 1 493 4.98e-173 497
MS.gene76499.t1 AT5G19560 55.090 501 209 8 22 514 1 493 4.98e-173 497
MS.gene76499.t1 AT5G19560 60.326 368 139 4 17 381 15 378 4.60e-149 432
MS.gene76499.t1 AT5G02010 52.432 370 160 5 66 420 69 437 4.93e-138 410
MS.gene76499.t1 AT4G38430 50.394 381 166 5 66 429 89 463 2.32e-130 390
MS.gene76499.t1 AT5G19560 56.868 364 145 6 158 514 5 363 2.34e-129 381
MS.gene76499.t1 AT3G55660 50.549 364 158 5 66 410 106 466 1.83e-126 381
MS.gene76499.t1 AT5G05940 48.031 381 177 4 57 417 92 471 3.56e-125 379
MS.gene76499.t1 AT4G00460 48.378 370 171 5 62 413 99 466 7.82e-124 371
MS.gene76499.t1 AT4G00460 48.378 370 171 5 62 413 99 466 7.82e-124 371
MS.gene76499.t1 AT2G45890 44.146 410 203 6 30 418 56 460 4.72e-119 358
MS.gene76499.t1 AT1G01700 46.070 369 181 4 62 413 111 478 3.61e-117 354
MS.gene76499.t1 AT3G55660 49.552 335 147 5 66 381 106 437 3.45e-113 342
MS.gene76499.t1 AT1G01700 42.607 399 181 5 62 413 111 508 1.02e-110 338
MS.gene76499.t1 AT5G05940 46.705 349 165 4 57 385 92 439 1.26e-110 337
MS.gene76499.t1 AT1G31650 44.663 356 185 4 68 413 109 462 1.39e-102 318
MS.gene76499.t1 AT4G00460 46.341 328 156 6 104 413 8 333 1.58e-102 311
MS.gene76499.t1 AT1G31650 44.663 356 185 4 68 413 137 490 3.93e-102 318
MS.gene76499.t1 AT1G01700 42.486 346 174 5 62 383 111 455 4.29e-97 301
MS.gene76499.t1 AT4G00460 50.450 222 100 2 62 274 99 319 4.24e-75 241
MS.gene76499.t1 AT1G01700 47.748 222 106 2 62 274 111 331 1.99e-70 229
MS.gene76499.t1 AT1G01700 47.748 222 106 2 62 274 111 331 1.99e-70 229

Find 108 sgRNAs with CRISPR-Local

Find 185 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTCTGCCGGCATTGGTTCT+AGG 0.204274 2.3:-2338742 None:intergenic
TTCAAGAATATTAGAAAGTT+TGG 0.227911 2.3:+2340441 MS.gene76499:CDS
CTCAAAATCCATCCGGAAAA+AGG 0.233007 2.3:+2340515 MS.gene76499:CDS
ATCTAAGGATGGCACAAATA+TGG 0.308745 2.3:+2338847 MS.gene76499:CDS
AGATTTGCCAAACTGCTATT+AGG 0.311283 2.3:+2338484 MS.gene76499:CDS
AATGACACTATCAGATTTCA+TGG 0.321581 2.3:+2340612 MS.gene76499:CDS
TTGAAGCATCAATAGTGATT+TGG 0.325493 2.3:+2339917 MS.gene76499:CDS
CACAGATTATGTTGTTGAAA+TGG 0.332735 2.3:+2338808 MS.gene76499:CDS
AGACAAACAGTGATGATAAA+TGG 0.351330 2.3:+2339326 MS.gene76499:CDS
AATGCTTTCACAAACCTTGC+AGG 0.357030 2.3:+2338559 MS.gene76499:CDS
AAAAGATAACAAATCTGCTT+GGG 0.365484 2.3:+2339957 MS.gene76499:CDS
TAAGCAAAATCCAATTCAAC+AGG 0.366110 2.3:+2340088 MS.gene76499:CDS
AAAAGGTGTTTCATCTGCTT+TGG 0.366789 2.3:+2338528 MS.gene76499:CDS
ACTATCAGATTTCATGGGTT+GGG 0.366968 2.3:+2340618 MS.gene76499:CDS
AGCAAGAACAAGAAGGTTAC+AGG 0.370898 2.3:+2338031 MS.gene76499:CDS
ATGTTCTTACCCTGTTGAAT+TGG 0.378187 2.3:-2340098 None:intergenic
TTGGGGTTCTGCTGTAAGTT+TGG 0.378716 2.3:+2339975 MS.gene76499:CDS
GCTTTCCTTTCTGCCGGCAT+TGG 0.395285 2.3:-2338749 None:intergenic
TTGCTAATTACCTTTGCCTT+AGG 0.408925 2.3:-2338204 None:intergenic
GCATCGAGCTTGCGTAAGGC+TGG 0.412254 2.3:-2339112 None:intergenic
TCTGTCTCTTCTCTAGGACT+AGG 0.415970 2.3:-2340562 None:intergenic
AGCAAACTGTTTAATTTCAG+AGG 0.419050 2.3:+2338054 MS.gene76499:CDS
CTTATATCCAATGCAGATTG+AGG 0.427432 2.3:-2340069 None:intergenic
TATATATGTTTGCAGGATGT+AGG 0.429535 2.3:+2340397 MS.gene76499:intron
GTCTTCACCTAATAGCAGTT+TGG 0.429708 2.3:-2338491 None:intergenic
AAGGTATGACACCTTCTTGT+TGG 0.436997 2.3:-2340749 None:intergenic
TCCTTCTTCATGTCTGAGTC+GGG 0.438176 2.3:-2340652 None:intergenic
AGACCTTCTGCTGGAACCTT+CGG 0.442349 2.3:-2339361 None:intergenic
AAGTCATCTGAAATTTCAAA+AGG 0.443138 2.3:-2340676 None:intergenic
GTCCTTCTTCATGTCTGAGT+CGG 0.444030 2.3:-2340653 None:intergenic
CATCTTGCTTTCCTTTCTGC+CGG 0.449559 2.3:-2338755 None:intergenic
ATGACAAGTCCATGGTTGAT+AGG 0.449586 2.3:-2339861 None:intergenic
GACATGTCAGGCGGAGGAAA+AGG 0.449894 2.3:+2338511 MS.gene76499:CDS
TAAAACAAAATGGTTAGAGC+AGG 0.454695 2.3:+2338006 None:intergenic
ATTGAGGAATGCCGGGGAAT+CGG 0.456512 2.3:-2340053 None:intergenic
CCGTTGTCTGTCTCTTCTCT+AGG 0.456987 2.3:-2340568 None:intergenic
CTGTCTCTTCTCTAGGACTA+GGG 0.462467 2.3:-2340561 None:intergenic
GTGCTTTATTAGAAGTAAGA+TGG 0.465174 2.3:-2340031 None:intergenic
CACCTTCTTGTTGGTCACTA+CGG 0.467037 2.3:-2340740 None:intergenic
TTCTTGTTGGTCACTACGGC+TGG 0.469353 2.3:-2340736 None:intergenic
GGGATGTTTGATAGCAATGC+AGG 0.469904 2.3:+2338075 MS.gene76499:CDS
AGTCCATGGTTGATAGGAAC+TGG 0.470588 2.3:-2339855 None:intergenic
CACTATCAGATTTCATGGGT+TGG 0.472103 2.3:+2340617 MS.gene76499:CDS
ATATATGTTTGCAGGATGTA+GGG 0.477020 2.3:+2340398 MS.gene76499:intron
TTTGAGCGTTGACGCAGCAT+TGG 0.480928 2.3:+2338113 MS.gene76499:CDS
AACTTGAGCATTTATTGCCA+TGG 0.484951 2.3:-2339449 None:intergenic
GTCTAGGGGACGCAGCCTAC+AGG 0.486560 2.3:+2339803 MS.gene76499:CDS
TCTTGAATAGCTTTCGAGAA+CGG 0.489088 2.3:-2340425 None:intergenic
TTCAGAGATGGAACAGATGA+AGG 0.492979 2.3:+2338459 MS.gene76499:intron
CTAATAAAGCACCGATTCCC+CGG 0.497611 2.3:+2340042 MS.gene76499:CDS
GAGGGATTCAATATAGTTCT+CGG 0.498222 2.3:-2339491 None:intergenic
AGGGATTCAATATAGTTCTC+GGG 0.501674 2.3:-2339490 None:intergenic
CTATCAGATTTCATGGGTTG+GGG 0.508712 2.3:+2340619 MS.gene76499:CDS
ATGGTTGATAGGAACTGGTC+AGG 0.510760 2.3:-2339850 None:intergenic
CAATGCAGATTGAGGAATGC+CGG 0.511267 2.3:-2340061 None:intergenic
GTGTCATACCTTGAGACATT+GGG 0.511382 2.3:+2340760 MS.gene76499:CDS
AATGCAGATTGAGGAATGCC+GGG 0.512562 2.3:-2340060 None:intergenic
CGGCATTCCTCAATCTGCAT+TGG 0.516814 2.3:+2340062 MS.gene76499:CDS
CAGAATGGAAGAGCATGTCT+AGG 0.525534 2.3:+2339787 MS.gene76499:intron
CAACAATTACCTACAGAAGA+TGG 0.527156 2.3:+2338138 MS.gene76499:CDS
AGTCATCTGAAATTTCAAAA+GGG 0.530996 2.3:-2340675 None:intergenic
AGAATGGAAGAGCATGTCTA+GGG 0.531897 2.3:+2339788 MS.gene76499:intron
GCAAACTGTTTAATTTCAGA+GGG 0.534221 2.3:+2338055 MS.gene76499:CDS
TATCAAACTCAAAATCCATC+CGG 0.537316 2.3:+2340508 MS.gene76499:CDS
CATCGAGCTTGCGTAAGGCT+GGG 0.544045 2.3:-2339111 None:intergenic
CATTGCATCGAGCTTGCGTA+AGG 0.548400 2.3:-2339116 None:intergenic
TAGAACCAATGCCGGCAGAA+AGG 0.552415 2.3:+2338744 MS.gene76499:CDS
CTATTAGGTGAAGACATGTC+AGG 0.556837 2.3:+2338499 MS.gene76499:CDS
GTATCAGATAGACCTTCTGC+TGG 0.558147 2.3:-2339370 None:intergenic
AACGGCAGTGCAGAATTGCC+TGG 0.566440 2.3:+2340586 MS.gene76499:CDS
CATCAATAGTGATTTGGAAG+CGG 0.572172 2.3:+2339923 MS.gene76499:CDS
ATGACACTATCAGATTTCAT+GGG 0.572887 2.3:+2340613 MS.gene76499:CDS
AAAACAAAATGGTTAGAGCA+GGG 0.573632 2.3:+2338007 None:intergenic
ATGTTCTGATGACAAGTCCA+TGG 0.579070 2.3:-2339869 None:intergenic
ACACCGAAGGTTCCAGCAGA+AGG 0.582916 2.3:+2339358 MS.gene76499:CDS
TCAAGTACTTAAAGCAGCCA+TGG 0.583349 2.3:+2339432 MS.gene76499:CDS
AAAGCGCCTAGAACCAATGC+CGG 0.585779 2.3:+2338736 MS.gene76499:CDS
GGTGTCATACCTTGAGACAT+TGG 0.588792 2.3:+2340759 MS.gene76499:CDS
TCTGATAGTGTCATTGAACC+AGG 0.592712 2.3:-2340604 None:intergenic
TCATGACTCCCAATGTCTCA+AGG 0.592719 2.3:-2340768 None:intergenic
AAATTCAGACAAAATTCCTA+AGG 0.594250 2.3:+2338188 MS.gene76499:CDS
TCTGCTGGAACCTTCGGTGT+AGG 0.594266 2.3:-2339355 None:intergenic
CGGCAGAAAGGAAAGCAAGA+TGG 0.595429 2.3:+2338756 MS.gene76499:CDS
GGTGAAGACATGTCAGGCGG+AGG 0.603950 2.3:+2338505 MS.gene76499:CDS
AGACAAAATTCCTAAGGCAA+AGG 0.604457 2.3:+2338194 MS.gene76499:CDS
ACCCGACTCAGACATGAAGA+AGG 0.606022 2.3:+2340651 MS.gene76499:CDS
TCTTCTCTAGGACTAGGGCA+TGG 0.609196 2.3:-2340556 None:intergenic
TTCAACTGTAATGCTCCTGT+AGG 0.612138 2.3:-2339818 None:intergenic
GCAGGGGAGCAAGAACAAGA+AGG 0.614639 2.3:+2338024 MS.gene76499:CDS
AAACAAAATGGTTAGAGCAG+GGG 0.622813 2.3:+2338008 None:intergenic
AGCCGTAGTGACCAACAAGA+AGG 0.624996 2.3:+2340738 MS.gene76499:CDS
GTTCTTTAATGACGCGACGT+CGG 0.625969 2.3:-2340796 None:intergenic
GAGGCAGAACCATCTTCTGT+AGG 0.631804 2.3:-2338147 None:intergenic
AAAGATAACAAATCTGCTTG+GGG 0.634195 2.3:+2339958 MS.gene76499:CDS
GGATGTTTGATAGCAATGCA+GGG 0.648272 2.3:+2338076 MS.gene76499:CDS
TAAGGATGGCACAAATATGG+AGG 0.649464 2.3:+2338850 MS.gene76499:CDS
TGACCAGTTCCTATCAACCA+TGG 0.658769 2.3:+2339852 MS.gene76499:CDS
CTATATTGAATCCCTCCCCA+AGG 0.660034 2.3:+2339498 MS.gene76499:CDS
CAAACAGTGATGATAAATGG+TGG 0.661183 2.3:+2339329 MS.gene76499:CDS
AAAGATGCAGATGATGCAGA+CGG 0.668543 2.3:+2339292 MS.gene76499:CDS
GGGATTCAATATAGTTCTCG+GGG 0.671901 2.3:-2339489 None:intergenic
ATGGTGGTTACCTACACCGA+AGG 0.681105 2.3:+2339345 MS.gene76499:CDS
ATGCAGATTGAGGAATGCCG+GGG 0.684435 2.3:-2340059 None:intergenic
CCTAGAGAAGAGACAGACAA+CGG 0.697146 2.3:+2340568 MS.gene76499:CDS
GAATGGAAGAGCATGTCTAG+GGG 0.703290 2.3:+2339789 MS.gene76499:intron
TTAGGTGAAGACATGTCAGG+CGG 0.713150 2.3:+2338502 MS.gene76499:CDS
GTAAGGCTGGGATATTCATG+TGG 0.719894 2.3:-2339099 None:intergenic
AAGCAAAATCCAATTCAACA+GGG 0.722897 2.3:+2340089 MS.gene76499:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATAATAAAATTTGATATTG+TGG + chr2.3:2338426-2338445 MS.gene76499:intron 10.0%
!! ATATTAGCAATATATAATGT+TGG - chr2.3:2338358-2338377 None:intergenic 15.0%
!! TTAAATGATAAATGATTGTT+TGG + chr2.3:2340120-2340139 MS.gene76499:intron 15.0%
!! TTAAATTCAAGTGTTTAATA+AGG - chr2.3:2339688-2339707 None:intergenic 15.0%
!! AATCTATTCATTCAAAAGTA+AGG - chr2.3:2339053-2339072 None:intergenic 20.0%
!! GATTTATTATATATGTTTGC+AGG + chr2.3:2340390-2340409 MS.gene76499:intron 20.0%
!! TTCAAGAATATTAGAAAGTT+TGG + chr2.3:2340441-2340460 MS.gene76499:CDS 20.0%
!!! ATGAATCATTTTCTGAAAAT+GGG - chr2.3:2338651-2338670 None:intergenic 20.0%
!!! ATTACTATAGTTTTTCTCAT+GGG - chr2.3:2339580-2339599 None:intergenic 20.0%
!!! TAAATTTGTCTTTTTCAGAA+TGG + chr2.3:2339772-2339791 MS.gene76499:intron 20.0%
!!! TATGAATCATTTTCTGAAAA+TGG - chr2.3:2338652-2338671 None:intergenic 20.0%
! AAAAAGATAACAAATCTGCT+TGG + chr2.3:2339956-2339975 MS.gene76499:CDS 25.0%
! AAAAGATAACAAATCTGCTT+GGG + chr2.3:2339957-2339976 MS.gene76499:CDS 25.0%
! AAAGAGTAATTAAACTGAGA+GGG - chr2.3:2338885-2338904 None:intergenic 25.0%
! AAATTCAGACAAAATTCCTA+AGG + chr2.3:2338188-2338207 MS.gene76499:CDS 25.0%
! ACATAATCATGTCATGATAA+TGG + chr2.3:2340368-2340387 MS.gene76499:intron 25.0%
! AGAAAAACTATAGTAATCTG+GGG + chr2.3:2339583-2339602 MS.gene76499:intron 25.0%
! ATACATATACGAATATGATG+AGG + chr2.3:2340329-2340348 MS.gene76499:intron 25.0%
! ATGTTAGCAGTTAAATTGTT+AGG - chr2.3:2338306-2338325 None:intergenic 25.0%
! CTCAGTTTAATTACTCTTTA+CGG + chr2.3:2338886-2338905 MS.gene76499:intron 25.0%
! GAGAAAAACTATAGTAATCT+GGG + chr2.3:2339582-2339601 MS.gene76499:intron 25.0%
! TAAAGAGTAATTAAACTGAG+AGG - chr2.3:2338886-2338905 None:intergenic 25.0%
! TCAGTTTAATTACTCTTTAC+GGG + chr2.3:2338887-2338906 MS.gene76499:intron 25.0%
! TGAGAAAAACTATAGTAATC+TGG + chr2.3:2339581-2339600 MS.gene76499:intron 25.0%
! TGTTAGCAGTTAAATTGTTA+GGG - chr2.3:2338305-2338324 None:intergenic 25.0%
! TTAATAAGGACAAATGCATT+GGG - chr2.3:2339674-2339693 None:intergenic 25.0%
! TTTAATAAGGACAAATGCAT+TGG - chr2.3:2339675-2339694 None:intergenic 25.0%
!! AAGTCATCTGAAATTTCAAA+AGG - chr2.3:2340679-2340698 None:intergenic 25.0%
!! AGTCATCTGAAATTTCAAAA+GGG - chr2.3:2340678-2340697 None:intergenic 25.0%
!! CAAAACTTTAGAAATTCAAG+AGG - chr2.3:2339181-2339200 None:intergenic 25.0%
!! GATTACTATAGTTTTTCTCA+TGG - chr2.3:2339581-2339600 None:intergenic 25.0%
!!! AAGCAGATTTGTTATCTTTT+TGG - chr2.3:2339957-2339976 None:intergenic 25.0%
!!! ATATTTTTTTGTCTCACCTT+GGG - chr2.3:2339517-2339536 None:intergenic 25.0%
AAAGATAACAAATCTGCTTG+GGG + chr2.3:2339958-2339977 MS.gene76499:CDS 30.0%
AACCTTATGGAAACAACTTA+TGG + chr2.3:2340197-2340216 MS.gene76499:intron 30.0%
AAGAAAAATACATACCTGCA+AGG - chr2.3:2338576-2338595 None:intergenic 30.0%
AAGCAAAATCCAATTCAACA+GGG + chr2.3:2340089-2340108 MS.gene76499:CDS 30.0%
AATGACACTATCAGATTTCA+TGG + chr2.3:2340612-2340631 MS.gene76499:CDS 30.0%
AGACAAACAGTGATGATAAA+TGG + chr2.3:2339326-2339345 MS.gene76499:CDS 30.0%
ATACTGTTTGAGAAACCTTA+TGG + chr2.3:2340184-2340203 MS.gene76499:intron 30.0%
ATATACGAATATGATGAGGT+TGG + chr2.3:2340333-2340352 MS.gene76499:intron 30.0%
ATATATGTTTGCAGGATGTA+GGG + chr2.3:2340398-2340417 MS.gene76499:intron 30.0%
ATGACACTATCAGATTTCAT+GGG + chr2.3:2340613-2340632 MS.gene76499:CDS 30.0%
CACAGATTATGTTGTTGAAA+TGG + chr2.3:2338808-2338827 MS.gene76499:CDS 30.0%
GTCTGTTAAAAACTATTGCA+AGG + chr2.3:2338328-2338347 MS.gene76499:intron 30.0%
GTTAGCAGTTAAATTGTTAG+GGG - chr2.3:2338304-2338323 None:intergenic 30.0%
TAAGCAAAATCCAATTCAAC+AGG + chr2.3:2340088-2340107 MS.gene76499:CDS 30.0%
TATATATGTTTGCAGGATGT+AGG + chr2.3:2340397-2340416 MS.gene76499:intron 30.0%
TATCAAACTCAAAATCCATC+CGG + chr2.3:2340508-2340527 MS.gene76499:CDS 30.0%
TCAATCATATAACAACGATG+AGG - chr2.3:2339029-2339048 None:intergenic 30.0%
TTAGATTGAAAGCTTGACAA+TGG + chr2.3:2338934-2338953 MS.gene76499:intron 30.0%
! AACTGAAATTCTCCTTTTTC+CGG - chr2.3:2340530-2340549 None:intergenic 30.0%
! AGCAAACTGTTTAATTTCAG+AGG + chr2.3:2338054-2338073 MS.gene76499:CDS 30.0%
! GCAAACTGTTTAATTTCAGA+GGG + chr2.3:2338055-2338074 MS.gene76499:CDS 30.0%
! GTGAATTCAGCATCTATTTT+CGG + chr2.3:2338707-2338726 MS.gene76499:intron 30.0%
! GTGCTTTATTAGAAGTAAGA+TGG - chr2.3:2340034-2340053 None:intergenic 30.0%
! TATAGTTTTTCTCATGGGAA+CGG - chr2.3:2339575-2339594 None:intergenic 30.0%
! TTGAAGCATCAATAGTGATT+TGG + chr2.3:2339917-2339936 MS.gene76499:CDS 30.0%
!! TGCTCAAGTTTTATCAGAAA+TGG + chr2.3:2339462-2339481 MS.gene76499:CDS 30.0%
!!! GATATTTTTTTGTCTCACCT+TGG - chr2.3:2339518-2339537 None:intergenic 30.0%
!!! GGTTGTTTTTAATTCAGAGA+TGG + chr2.3:2338447-2338466 MS.gene76499:intron 30.0%
!!! TATTTTTTTGTCTCACCTTG+GGG - chr2.3:2339516-2339535 None:intergenic 30.0%
!!! TGTTGATTGTTTTGAACAAC+TGG + chr2.3:2339208-2339227 MS.gene76499:intron 30.0%
AACTTGAGCATTTATTGCCA+TGG - chr2.3:2339452-2339471 None:intergenic 35.0%
ACTATCAGATTTCATGGGTT+GGG + chr2.3:2340618-2340637 MS.gene76499:CDS 35.0%
AGACAAAATTCCTAAGGCAA+AGG + chr2.3:2338194-2338213 MS.gene76499:CDS 35.0%
AGATGCTGAATTCACAAATG+AGG - chr2.3:2338702-2338721 None:intergenic 35.0%
AGATTTGCCAAACTGCTATT+AGG + chr2.3:2338484-2338503 MS.gene76499:CDS 35.0%
AGGGATTCAATATAGTTCTC+GGG - chr2.3:2339493-2339512 None:intergenic 35.0%
ATCTAAGGATGGCACAAATA+TGG + chr2.3:2338847-2338866 MS.gene76499:CDS 35.0%
ATGTTCTTACCCTGTTGAAT+TGG - chr2.3:2340101-2340120 None:intergenic 35.0%
CAAACAGTGATGATAAATGG+TGG + chr2.3:2339329-2339348 MS.gene76499:CDS 35.0%
CAACAATTACCTACAGAAGA+TGG + chr2.3:2338138-2338157 MS.gene76499:CDS 35.0%
CATATAACAACGATGAGGAT+AGG - chr2.3:2339024-2339043 None:intergenic 35.0%
CTTATATCCAATGCAGATTG+AGG - chr2.3:2340072-2340091 None:intergenic 35.0%
GAGGGATTCAATATAGTTCT+CGG - chr2.3:2339494-2339513 None:intergenic 35.0%
TAAGGCAAAGGTAATTAGCA+AGG + chr2.3:2338206-2338225 MS.gene76499:intron 35.0%
TAGTACTAGTCGTAACTAAG+CGG - chr2.3:2339711-2339730 None:intergenic 35.0%
TATGGAAACAACTTATGGCA+TGG + chr2.3:2340202-2340221 MS.gene76499:intron 35.0%
TCACAGCAAAAATCTAAGGA+TGG + chr2.3:2338836-2338855 MS.gene76499:CDS 35.0%
TCCTTCACAGCAAAAATCTA+AGG + chr2.3:2338832-2338851 MS.gene76499:CDS 35.0%
TCTTGAATAGCTTTCGAGAA+CGG - chr2.3:2340428-2340447 None:intergenic 35.0%
TTGCTAATTACCTTTGCCTT+AGG - chr2.3:2338207-2338226 None:intergenic 35.0%
! AACTATAGTAATCTGGGGTT+CGG + chr2.3:2339588-2339607 MS.gene76499:intron 35.0%
! ATAGTTTTTCTCATGGGAAC+GGG - chr2.3:2339574-2339593 None:intergenic 35.0%
! CATCAATAGTGATTTGGAAG+CGG + chr2.3:2339923-2339942 MS.gene76499:CDS 35.0%
! TGATCCTTGACTTTTTGATG+AGG - chr2.3:2338169-2338188 None:intergenic 35.0%
! TGCCATAAGTTGTTTCCATA+AGG - chr2.3:2340202-2340221 None:intergenic 35.0%
! TGTATTAGCTTAGCGCTTAT+TGG - chr2.3:2340314-2340333 None:intergenic 35.0%
!! AAAAGGTGTTTCATCTGCTT+TGG + chr2.3:2338528-2338547 MS.gene76499:CDS 35.0%
!! TCCTTAGATTTTTGCTGTGA+AGG - chr2.3:2338836-2338855 None:intergenic 35.0%
!!! TGGAAGTTTTTGTTGTTGCT+TGG - chr2.3:2340719-2340738 None:intergenic 35.0%
AAAGATGCAGATGATGCAGA+CGG + chr2.3:2339292-2339311 MS.gene76499:CDS 40.0%
AAGGTATGACACCTTCTTGT+TGG - chr2.3:2340752-2340771 None:intergenic 40.0%
AATGCTTTCACAAACCTTGC+AGG + chr2.3:2338559-2338578 MS.gene76499:CDS 40.0%
ACCTTGCAATAGTTTCTCTC+TGG - chr2.3:2338253-2338272 None:intergenic 40.0%
AGCAAGAACAAGAAGGTTAC+AGG + chr2.3:2338031-2338050 MS.gene76499:CDS 40.0%
ATGACAAGTCCATGGTTGAT+AGG - chr2.3:2339864-2339883 None:intergenic 40.0%
ATGTTCTGATGACAAGTCCA+TGG - chr2.3:2339872-2339891 None:intergenic 40.0%
CAAGCTTTCAATCTAACAGC+AGG - chr2.3:2338930-2338949 None:intergenic 40.0%
CACTATCAGATTTCATGGGT+TGG + chr2.3:2340617-2340636 MS.gene76499:CDS 40.0%
CTATTAGGTGAAGACATGTC+AGG + chr2.3:2338499-2338518 MS.gene76499:CDS 40.0%
CTCAAAATCCATCCGGAAAA+AGG + chr2.3:2340515-2340534 MS.gene76499:CDS 40.0%
GGGATTCAATATAGTTCTCG+GGG - chr2.3:2339492-2339511 None:intergenic 40.0%
GTCTTCACCTAATAGCAGTT+TGG - chr2.3:2338494-2338513 None:intergenic 40.0%
GTGTCATACCTTGAGACATT+GGG + chr2.3:2340760-2340779 MS.gene76499:CDS 40.0%
TAAGGATGGCACAAATATGG+AGG + chr2.3:2338850-2338869 MS.gene76499:CDS 40.0%
TCAAGAGGTGACAAATGTGT+AGG - chr2.3:2339166-2339185 None:intergenic 40.0%
TCAAGTACTTAAAGCAGCCA+TGG + chr2.3:2339432-2339451 MS.gene76499:CDS 40.0%
TCTGCCTCATCAAAAAGTCA+AGG + chr2.3:2338162-2338181 MS.gene76499:CDS 40.0%
TTCAACTGTAATGCTCCTGT+AGG - chr2.3:2339821-2339840 None:intergenic 40.0%
TTCAGAGATGGAACAGATGA+AGG + chr2.3:2338459-2338478 MS.gene76499:intron 40.0%
! AGAATGGAAGAGCATGTCTA+GGG + chr2.3:2339788-2339807 MS.gene76499:intron 40.0%
! CTATCAGATTTCATGGGTTG+GGG + chr2.3:2340619-2340638 MS.gene76499:CDS 40.0%
! GAAATTCTCCTTTTTCCGGA+TGG - chr2.3:2340526-2340545 None:intergenic 40.0%
! GCCAGGTTTTTCTTATCTTC+CGG - chr2.3:2339614-2339633 None:intergenic 40.0%
! GGATGTTTGATAGCAATGCA+GGG + chr2.3:2338076-2338095 MS.gene76499:CDS 40.0%
! TCTGATAGTGTCATTGAACC+AGG - chr2.3:2340607-2340626 None:intergenic 40.0%
AATGCAGATTGAGGAATGCC+GGG - chr2.3:2340063-2340082 None:intergenic 45.0%
CAATGCAGATTGAGGAATGC+CGG - chr2.3:2340064-2340083 None:intergenic 45.0%
CACCTTCTTGTTGGTCACTA+CGG - chr2.3:2340743-2340762 None:intergenic 45.0%
CATCTTGCTTTCCTTTCTGC+CGG - chr2.3:2338758-2338777 None:intergenic 45.0%
CCTAGAGAAGAGACAGACAA+CGG + chr2.3:2340568-2340587 MS.gene76499:CDS 45.0%
CTATATTGAATCCCTCCCCA+AGG + chr2.3:2339498-2339517 MS.gene76499:CDS 45.0%
CTCCAGTCAAGGTTCAAACT+CGG + chr2.3:2339643-2339662 MS.gene76499:intron 45.0%
GCCAGAGAGAAACTATTGCA+AGG + chr2.3:2338249-2338268 MS.gene76499:intron 45.0%
GCCGGAAGATAAGAAAAACC+TGG + chr2.3:2339610-2339629 MS.gene76499:intron 45.0%
GGCAAAGGTAATTAGCAAGG+AGG + chr2.3:2338209-2338228 MS.gene76499:intron 45.0%
GTAAGGCTGGGATATTCATG+TGG - chr2.3:2339102-2339121 None:intergenic 45.0%
GTATCAGATAGACCTTCTGC+TGG - chr2.3:2339373-2339392 None:intergenic 45.0%
GTCCTTCTTCATGTCTGAGT+CGG - chr2.3:2340656-2340675 None:intergenic 45.0%
TCATGACTCCCAATGTCTCA+AGG - chr2.3:2340771-2340790 None:intergenic 45.0%
TCCAGTCAAGGTTCAAACTC+GGG + chr2.3:2339644-2339663 MS.gene76499:intron 45.0%
TCCTTCTTCATGTCTGAGTC+GGG - chr2.3:2340655-2340674 None:intergenic 45.0%
TGACCAGTTCCTATCAACCA+TGG + chr2.3:2339852-2339871 MS.gene76499:CDS 45.0%
TTAGGTGAAGACATGTCAGG+CGG + chr2.3:2338502-2338521 MS.gene76499:CDS 45.0%
TTGGGGTTCTGCTGTAAGTT+TGG + chr2.3:2339975-2339994 MS.gene76499:CDS 45.0%
! AACAACTGGTGATGATGAGC+AGG + chr2.3:2339222-2339241 MS.gene76499:intron 45.0%
! CAGAATGGAAGAGCATGTCT+AGG + chr2.3:2339787-2339806 MS.gene76499:intron 45.0%
! CAGTTCTTGCTTGATTCGCA+AGG + chr2.3:2338602-2338621 MS.gene76499:intron 45.0%
! GAATGGAAGAGCATGTCTAG+GGG + chr2.3:2339789-2339808 MS.gene76499:intron 45.0%
! GGGATGTTTGATAGCAATGC+AGG + chr2.3:2338075-2338094 MS.gene76499:CDS 45.0%
! GGTGTCATACCTTGAGACAT+TGG + chr2.3:2340759-2340778 MS.gene76499:CDS 45.0%
! TTTTTCTCATGGGAACGGGA+GGG - chr2.3:2339570-2339589 None:intergenic 45.0%
! TTTTTGTCTCACCTTGGGGA+GGG - chr2.3:2339512-2339531 None:intergenic 45.0%
!! AGTCCATGGTTGATAGGAAC+TGG - chr2.3:2339858-2339877 None:intergenic 45.0%
!! ATGGTTGATAGGAACTGGTC+AGG - chr2.3:2339853-2339872 None:intergenic 45.0%
!! CTAATAAAGCACCGATTCCC+CGG + chr2.3:2340042-2340061 MS.gene76499:CDS 45.0%
!! CTGTCTCTTCTCTAGGACTA+GGG - chr2.3:2340564-2340583 None:intergenic 45.0%
!! TCTGTCTCTTCTCTAGGACT+AGG - chr2.3:2340565-2340584 None:intergenic 45.0%
!!! TTTTTTGTCTCACCTTGGGG+AGG - chr2.3:2339513-2339532 None:intergenic 45.0%
ACCCGACTCAGACATGAAGA+AGG + chr2.3:2340651-2340670 MS.gene76499:CDS 50.0%
ACCCGAGTTTGAACCTTGAC+TGG - chr2.3:2339648-2339667 None:intergenic 50.0%
ACCTTGACTGGAGCAGTCTT+TGG - chr2.3:2339636-2339655 None:intergenic 50.0%
AGACCTTCTGCTGGAACCTT+CGG - chr2.3:2339364-2339383 None:intergenic 50.0%
AGCCGTAGTGACCAACAAGA+AGG + chr2.3:2340738-2340757 MS.gene76499:CDS 50.0%
ATGCAGATTGAGGAATGCCG+GGG - chr2.3:2340062-2340081 None:intergenic 50.0%
ATGGTGGTTACCTACACCGA+AGG + chr2.3:2339345-2339364 MS.gene76499:CDS 50.0%
ATTGAGGAATGCCGGGGAAT+CGG - chr2.3:2340056-2340075 None:intergenic 50.0%
CAAGGAGGAAATCGCAGCTA+AGG + chr2.3:2338224-2338243 MS.gene76499:intron 50.0%
CATTGCATCGAGCTTGCGTA+AGG - chr2.3:2339119-2339138 None:intergenic 50.0%
CCGTTGTCTGTCTCTTCTCT+AGG - chr2.3:2340571-2340590 None:intergenic 50.0%
CGGCAGAAAGGAAAGCAAGA+TGG + chr2.3:2338756-2338775 MS.gene76499:CDS 50.0%
CGGCATTCCTCAATCTGCAT+TGG + chr2.3:2340062-2340081 MS.gene76499:CDS 50.0%
GAGGCAGAACCATCTTCTGT+AGG - chr2.3:2338150-2338169 None:intergenic 50.0%
TAGAACCAATGCCGGCAGAA+AGG + chr2.3:2338744-2338763 MS.gene76499:CDS 50.0%
TTCTTGTTGGTCACTACGGC+TGG - chr2.3:2340739-2340758 None:intergenic 50.0%
! AAAGCGCCTAGAACCAATGC+CGG + chr2.3:2338736-2338755 MS.gene76499:CDS 50.0%
! ATAGTAATCTGGGGTTCGGC+CGG + chr2.3:2339592-2339611 MS.gene76499:intron 50.0%
! GTTTTTCTCATGGGAACGGG+AGG - chr2.3:2339571-2339590 None:intergenic 50.0%
!! TCTTCTCTAGGACTAGGGCA+TGG - chr2.3:2340559-2340578 None:intergenic 50.0%
!! TTTCTGCCGGCATTGGTTCT+AGG - chr2.3:2338745-2338764 None:intergenic 50.0%
!! TTTGAGCGTTGACGCAGCAT+TGG + chr2.3:2338113-2338132 MS.gene76499:CDS 50.0%
AACGGCAGTGCAGAATTGCC+TGG + chr2.3:2340586-2340605 MS.gene76499:CDS 55.0%
ACACCGAAGGTTCCAGCAGA+AGG + chr2.3:2339358-2339377 MS.gene76499:CDS 55.0%
CATCGAGCTTGCGTAAGGCT+GGG - chr2.3:2339114-2339133 None:intergenic 55.0%
GACATGTCAGGCGGAGGAAA+AGG + chr2.3:2338511-2338530 MS.gene76499:CDS 55.0%
GCAGGGGAGCAAGAACAAGA+AGG + chr2.3:2338024-2338043 MS.gene76499:CDS 55.0%
GCCAAAGACTGCTCCAGTCA+AGG + chr2.3:2339632-2339651 MS.gene76499:intron 55.0%
GCTTTCCTTTCTGCCGGCAT+TGG - chr2.3:2338752-2338771 None:intergenic 55.0%
! TCTGCTGGAACCTTCGGTGT+AGG - chr2.3:2339358-2339377 None:intergenic 55.0%
GACTGGAGCAGTCTTTGGCC+AGG - chr2.3:2339631-2339650 None:intergenic 60.0%
GCATCGAGCTTGCGTAAGGC+TGG - chr2.3:2339115-2339134 None:intergenic 60.0%
GGTGAAGACATGTCAGGCGG+AGG + chr2.3:2338505-2338524 MS.gene76499:CDS 60.0%
GTCTAGGGGACGCAGCCTAC+AGG + chr2.3:2339803-2339822 MS.gene76499:CDS 65.0%


Chromosome Type Strat End Strand Name
chr2.3 gene 2338015 2340813 2338015 ID=MS.gene76499
chr2.3 mRNA 2338015 2340813 2338015 ID=MS.gene76499.t1;Parent=MS.gene76499
chr2.3 exon 2338015 2338215 2338015 ID=MS.gene76499.t1.exon1;Parent=MS.gene76499.t1
chr2.3 CDS 2338015 2338215 2338015 ID=cds.MS.gene76499.t1;Parent=MS.gene76499.t1
chr2.3 exon 2338466 2338580 2338466 ID=MS.gene76499.t1.exon2;Parent=MS.gene76499.t1
chr2.3 CDS 2338466 2338580 2338466 ID=cds.MS.gene76499.t1;Parent=MS.gene76499.t1
chr2.3 exon 2338717 2338871 2338717 ID=MS.gene76499.t1.exon3;Parent=MS.gene76499.t1
chr2.3 CDS 2338717 2338871 2338717 ID=cds.MS.gene76499.t1;Parent=MS.gene76499.t1
chr2.3 exon 2339070 2339144 2339070 ID=MS.gene76499.t1.exon4;Parent=MS.gene76499.t1
chr2.3 CDS 2339070 2339144 2339070 ID=cds.MS.gene76499.t1;Parent=MS.gene76499.t1
chr2.3 exon 2339244 2339519 2339244 ID=MS.gene76499.t1.exon5;Parent=MS.gene76499.t1
chr2.3 CDS 2339244 2339519 2339244 ID=cds.MS.gene76499.t1;Parent=MS.gene76499.t1
chr2.3 exon 2339790 2340110 2339790 ID=MS.gene76499.t1.exon6;Parent=MS.gene76499.t1
chr2.3 CDS 2339790 2340110 2339790 ID=cds.MS.gene76499.t1;Parent=MS.gene76499.t1
chr2.3 exon 2340412 2340813 2340412 ID=MS.gene76499.t1.exon7;Parent=MS.gene76499.t1
chr2.3 CDS 2340412 2340813 2340412 ID=cds.MS.gene76499.t1;Parent=MS.gene76499.t1
Gene Sequence

>MS.gene76499

ATGGTTAGAGCAGGGGAGCAAGAACAAGAAGGTTACAGGAGCAAACTGTTTAATTTCAGAGGGATGTTTGATAGCAATGCAGGGAAACATACTAAGAGTTTGAGCGTTGACGCAGCATTGGATCAACAATTACCTACAGAAGATGGTTCTGCCTCATCAAAAAGTCAAGGATCAAATTCAGACAAAATTCCTAAGGCAAAGGTAATTAGCAAGGAGGAAATCGCAGCTAAGGAAGCCAGAGAGAAACTATTGCAAGGTTCGATCTCTTATACTGACAAATCTCTCTCCCCTAACAATTTAACTGCTAACATTTGTCTGTTAAAAACTATTGCAAGGTCAACCAACATTATATATTGCTAATATCATTCAAATTTTGTTACAATATCATATTCGCATGAAGTTTAGATTGTCTATAATAAAATTTGATATTGTGGTTGTTTTTAATTCAGAGATGGAACAGATGAAGGAGAGATTTGCCAAACTGCTATTAGGTGAAGACATGTCAGGCGGAGGAAAAGGTGTTTCATCTGCTTTGGCACTGTCAAATGCTTTCACAAACCTTGCAGGTATGTATTTTTCTTACTATTCAGTTCTTGCTTGATTCGCAAGGAACAAATATTTTGTTATATTCTTCCCATTTTCAGAAAATGATTCATATCATAAATGTTCTATTGTTTTCATATTCCTCATTTGTGAATTCAGCATCTATTTTCGGTGAACAAAAGCGCCTAGAACCAATGCCGGCAGAAAGGAAAGCAAGATGGAGAAAAGAAATTGATTTGCTTCTATCAGTCACAGATTATGTTGTTGAAATGGTTCCTTCACAGCAAAAATCTAAGGATGGCACAAATATGGAGGTAATCTTCTCCCTCTCAGTTTAATTACTCTTTACGGGATATTTGTATTTCAAAACCTGCTGTTAGATTGAAAGCTTGACAATGGTATAAATTTGTTTGATATGTCATTAACTACGTCAAGATATAATTATAAATATCGATCTATAATACCTATCCTCATCGTTGTTATATGATTGAACCTTACTTTTGAATGAATAGATTATGACAACACGACAACGAACAGATCTCCACATGAATATCCCAGCCTTACGCAAGCTCGATGCAATGCTTTTCGTAAGATTAATAACTTTGCCTACACATTTGTCACCTCTTGAATTTCTAAAGTTTTGAATTGATTGTTGATTGTTTTGAACAACTGGTGATGATGAGCAGGAATGTCTAGACAACTTCAAAGATCAAAATGAGTTCTATTATGTATCAAAAGATGCAGATGATGCAGACGGTGACAATGCAAAGACAAACAGTGATGATAAATGGTGGTTACCTACACCGAAGGTTCCAGCAGAAGGTCTATCTGATACAGCTAGAAAATTTTTACAATATCAGAAAGATTGTGTGAATCAAGTACTTAAAGCAGCCATGGCAATAAATGCTCAAGTTTTATCAGAAATGGAGATCCCCGAGAACTATATTGAATCCCTCCCCAAGGTGAGACAAAAAAATATCTAGTGCTATCTTAAGTGTCTAAGTCTTAACCCTCCCGTTCCCATGAGAAAAACTATAGTAATCTGGGGTTCGGCCGGAAGATAAGAAAAACCTGGCCAAAGACTGCTCCAGTCAAGGTTCAAACTCGGGTGCTCCCAATGCATTTGTCCTTATTAAACACTTGAATTTAACCGCTTAGTTACGACTAGTACTATTTACTTAGTTAAAAGTAATCTCACATTTTCTTACACAATTTAAATTTGTCTTTTTCAGAATGGAAGAGCATGTCTAGGGGACGCAGCCTACAGGAGCATTACAGTTGAATTTTTTGATCCTGACCAGTTCCTATCAACCATGGACTTGTCATCAGAACATAAAGTCGTAGATCTCAAGAATAAAATTGAAGCATCAATAGTGATTTGGAAGCGGAAAATGAACCAAAAAGATAACAAATCTGCTTGGGGTTCTGCTGTAAGTTTGGAAAAAAGAGAGCTCTTTGAAGAGAGAGCAGAAACCATCTTACTTCTAATAAAGCACCGATTCCCCGGCATTCCTCAATCTGCATTGGATATAAGCAAAATCCAATTCAACAGGGTAAGAACATTAAATGATAAATGATTGTTTGGATTGATTTATTTAATCTTATCTACTAGCTCAAGCACTTGTGATACTGTTTGAGAAACCTTATGGAAACAACTTATGGCATGGTCATAAGCTGTTTTTATGAAAATTTCACTTTATATTTTTGTTATATAAAGAGCTTATCTATAAGTACTTATATGATAAATGATTATCCAATAAGCGCTAAGCTAATACATATACGAATATGATGAGGTTGGAAGCATCATCTAACATAATCATGTCATGATAATGGATTTATTATATATGTTTGCAGGATGTAGGGCACGCCGTTCTCGAAAGCTATTCAAGAATATTAGAAAGTTTGGCATTCACAGTACTTTCAAGAATAGATGATGTACTTCAAGTCGATTATCAAACTCAAAATCCATCCGGAAAAAGGAGAATTTCAGTTTCAAAGCCATGCCCTAGTCCTAGAGAAGAGACAGACAACGGCAGTGCAGAATTGCCTGGTTCAATGACACTATCAGATTTCATGGGTTGGGGATCTGATCAACCCGACTCAGACATGAAGAAGGACCCTTTTGAAATTTCAGATGACTTTTACAAAGACATTGAAACCAAGCAACAACAAAAACTTCCAGCCGTAGTGACCAACAAGAAGGTGTCATACCTTGAGACATTGGGAGTCATGAGAAGTCCGACGTCGCGTCATTAA

Protein sequence

>MS.gene76499.t1

MVRAGEQEQEGYRSKLFNFRGMFDSNAGKHTKSLSVDAALDQQLPTEDGSASSKSQGSNSDKIPKAKMEQMKERFAKLLLGEDMSGGGKGVSSALALSNAFTNLAASIFGEQKRLEPMPAERKARWRKEIDLLLSVTDYVVEMVPSQQKSKDGTNMEIMTTRQRTDLHMNIPALRKLDAMLFECLDNFKDQNEFYYVSKDADDADGDNAKTNSDDKWWLPTPKVPAEGLSDTARKFLQYQKDCVNQVLKAAMAINAQVLSEMEIPENYIESLPKNGRACLGDAAYRSITVEFFDPDQFLSTMDLSSEHKVVDLKNKIEASIVIWKRKMNQKDNKSAWGSAVSLEKRELFEERAETILLLIKHRFPGIPQSALDISKIQFNRDVGHAVLESYSRILESLAFTVLSRIDDVLQVDYQTQNPSGKRRISVSKPCPSPREETDNGSAELPGSMTLSDFMGWGSDQPDSDMKKDPFEISDDFYKDIETKQQQKLPAVVTNKKVSYLETLGVMRSPTSRH