Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059632.t1 | XP_003620607.2 | 97.5 | 528 | 12 | 1 | 1 | 527 | 22 | 549 | 2.40E-291 | 1010.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059632.t1 | Q9LV40 | 65.1 | 455 | 142 | 5 | 74 | 527 | 85 | 523 | 5.6e-156 | 552.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059632.t1 | F6LPV1 | 97.5 | 528 | 12 | 1 | 1 | 527 | 22 | 549 | 1.7e-291 | 1010.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050100 | MS.gene059632 | 0.821838 | 3.26E-53 | -1.69E-46 |
| MS.gene052142 | MS.gene059632 | 0.873701 | 1.20E-67 | -1.69E-46 |
| MS.gene052187 | MS.gene059632 | 0.849717 | 2.70E-60 | -1.69E-46 |
| MS.gene052456 | MS.gene059632 | 0.803453 | 3.46E-49 | -1.69E-46 |
| MS.gene052698 | MS.gene059632 | 0.81829 | 2.12E-52 | -1.69E-46 |
| MS.gene053383 | MS.gene059632 | 0.825051 | 5.79E-54 | -1.69E-46 |
| MS.gene053798 | MS.gene059632 | 0.80292 | 4.46E-49 | -1.69E-46 |
| MS.gene055359 | MS.gene059632 | 0.880116 | 7.15E-70 | -1.69E-46 |
| MS.gene059006 | MS.gene059632 | 0.811409 | 7.10E-51 | -1.69E-46 |
| MS.gene059632 | MS.gene061336 | 0.865344 | 6.32E-65 | -1.69E-46 |
| MS.gene059632 | MS.gene061337 | 0.866961 | 1.94E-65 | -1.69E-46 |
| MS.gene059632 | MS.gene067103 | 0.829958 | 3.85E-55 | -1.69E-46 |
| MS.gene059632 | MS.gene068959 | 0.80934 | 1.99E-50 | -1.69E-46 |
| MS.gene059632 | MS.gene069330 | 0.823429 | 1.39E-53 | -1.69E-46 |
| MS.gene059632 | MS.gene074125 | 0.818393 | 2.01E-52 | -1.69E-46 |
| MS.gene059632 | MS.gene07830 | 0.815926 | 7.20E-52 | -1.69E-46 |
| MS.gene059632 | MS.gene08896 | 0.820758 | 5.79E-53 | -1.69E-46 |
| MS.gene059632 | MS.gene22109 | 0.849705 | 2.72E-60 | -1.69E-46 |
| MS.gene059632 | MS.gene22410 | 0.806132 | 9.54E-50 | -1.69E-46 |
| MS.gene059632 | MS.gene22900 | 0.806328 | 8.68E-50 | -1.69E-46 |
| MS.gene059632 | MS.gene24698 | 0.827461 | 1.54E-54 | -1.69E-46 |
| MS.gene059632 | MS.gene25133 | 0.815095 | 1.10E-51 | -1.69E-46 |
| MS.gene059632 | MS.gene32761 | 0.81936 | 1.21E-52 | -1.69E-46 |
| MS.gene059632 | MS.gene38771 | 0.8416 | 4.31E-58 | -1.69E-46 |
| MS.gene059632 | MS.gene42679 | 0.817445 | 3.29E-52 | -1.69E-46 |
| MS.gene059632 | MS.gene51424 | 0.821845 | 3.25E-53 | -1.69E-46 |
| MS.gene059632 | MS.gene53275 | 0.80046 | 1.43E-48 | -1.69E-46 |
| MS.gene059632 | MS.gene54531 | 0.821531 | 3.84E-53 | -1.69E-46 |
| MS.gene059632 | MS.gene55468 | 0.818809 | 1.61E-52 | -1.69E-46 |
| MS.gene059632 | MS.gene56024 | 0.823228 | 1.55E-53 | -1.69E-46 |
| MS.gene059632 | MS.gene56232 | 0.800238 | 1.58E-48 | -1.69E-46 |
| MS.gene059632 | MS.gene59580 | 0.800592 | 1.34E-48 | -1.69E-46 |
| MS.gene059632 | MS.gene59848 | 0.806097 | 9.70E-50 | -1.69E-46 |
| MS.gene059632 | MS.gene60245 | 0.807353 | 5.27E-50 | -1.69E-46 |
| MS.gene059632 | MS.gene61338 | 0.88791 | 9.42E-73 | -1.69E-46 |
| MS.gene059632 | MS.gene61665 | 0.8116 | 6.46E-51 | -1.69E-46 |
| MS.gene059632 | MS.gene62049 | 0.827299 | 1.69E-54 | -1.69E-46 |
| MS.gene059632 | MS.gene65481 | 0.807811 | 4.21E-50 | -1.69E-46 |
| MS.gene059632 | MS.gene66709 | 0.810092 | 1.37E-50 | -1.69E-46 |
| MS.gene059632 | MS.gene67194 | 0.816629 | 5.01E-52 | -1.69E-46 |
| MS.gene059632 | MS.gene68655 | 0.810263 | 1.26E-50 | -1.69E-46 |
| MS.gene059632 | MS.gene68821 | 0.810719 | 1.00E-50 | -1.69E-46 |
| MS.gene059632 | MS.gene68975 | 0.810896 | 9.18E-51 | -1.69E-46 |
| MS.gene059632 | MS.gene69587 | 0.832617 | 8.53E-56 | -1.69E-46 |
| MS.gene059632 | MS.gene73229 | 0.83996 | 1.16E-57 | -1.69E-46 |
| MS.gene059632 | MS.gene74448 | 0.855587 | 5.71E-62 | -1.69E-46 |
| MS.gene059632 | MS.gene75494 | 0.860047 | 2.71E-63 | -1.69E-46 |
| MS.gene059632 | MS.gene79672 | 0.824666 | 7.13E-54 | -1.69E-46 |
| MS.gene059632 | MS.gene82571 | 0.804364 | 2.24E-49 | -1.69E-46 |
| MS.gene059632 | MS.gene82810 | 0.800482 | 1.41E-48 | -1.69E-46 |
| MS.gene059632 | MS.gene83221 | 0.809259 | 2.07E-50 | -1.69E-46 |
| MS.gene059632 | MS.gene88180 | 0.848902 | 4.56E-60 | -1.69E-46 |
| MS.gene059632 | MS.gene90334 | 0.839997 | 1.13E-57 | -1.69E-46 |
| MS.gene059632 | MS.gene91762 | 0.814138 | 1.79E-51 | -1.69E-46 |
| MS.gene059632 | MS.gene91805 | 0.866668 | 2.41E-65 | -1.69E-46 |
| MS.gene059632 | MS.gene92551 | 0.815664 | 8.23E-52 | -1.69E-46 |
| MS.gene059632 | MS.gene93760 | 0.829399 | 5.26E-55 | -1.69E-46 |
| MS.gene059632 | MS.gene94555 | 0.834731 | 2.53E-56 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene85116 | MS.gene059632 | PPI |
| MS.gene059632 | MS.gene36316 | PPI |
| MS.gene76499 | MS.gene059632 | PPI |
| MS.gene33398 | MS.gene059632 | PPI |
| MS.gene068265 | MS.gene059632 | PPI |
| MS.gene47812 | MS.gene059632 | PPI |
| MS.gene24948 | MS.gene059632 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059632.t1 | MTR_6g087700 | 97.538 | 528 | 12 | 1 | 1 | 527 | 22 | 549 | 0.0 | 1061 |
| MS.gene059632.t1 | MTR_2g101830 | 60.413 | 533 | 173 | 12 | 6 | 527 | 28 | 533 | 0.0 | 580 |
| MS.gene059632.t1 | MTR_4g013165 | 62.379 | 412 | 134 | 11 | 125 | 527 | 1 | 400 | 3.40e-169 | 484 |
| MS.gene059632.t1 | MTR_7g065220 | 52.451 | 408 | 156 | 5 | 73 | 460 | 183 | 572 | 1.70e-142 | 425 |
| MS.gene059632.t1 | MTR_4g019770 | 53.704 | 378 | 159 | 4 | 62 | 424 | 84 | 460 | 1.79e-135 | 404 |
| MS.gene059632.t1 | MTR_4g075640 | 52.533 | 375 | 160 | 5 | 73 | 430 | 86 | 459 | 3.04e-131 | 393 |
| MS.gene059632.t1 | MTR_3g069590 | 50.653 | 383 | 163 | 5 | 73 | 436 | 99 | 474 | 5.46e-130 | 391 |
| MS.gene059632.t1 | MTR_5g081410 | 51.316 | 380 | 159 | 5 | 76 | 436 | 84 | 456 | 1.09e-129 | 390 |
| MS.gene059632.t1 | MTR_8g030850 | 47.074 | 376 | 174 | 5 | 73 | 424 | 96 | 470 | 7.66e-119 | 358 |
| MS.gene059632.t1 | MTR_7g077690 | 43.780 | 418 | 167 | 7 | 74 | 424 | 113 | 529 | 1.80e-109 | 336 |
| MS.gene059632.t1 | MTR_3g069590 | 49.102 | 334 | 150 | 4 | 73 | 387 | 99 | 431 | 6.56e-109 | 332 |
| MS.gene059632.t1 | MTR_5g025960 | 45.378 | 357 | 183 | 6 | 73 | 419 | 117 | 471 | 1.25e-97 | 306 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059632.t1 | AT3G24620 | 65.563 | 453 | 139 | 6 | 76 | 527 | 87 | 523 | 0.0 | 577 |
| MS.gene059632.t1 | AT4G13240 | 62.979 | 470 | 150 | 7 | 65 | 527 | 65 | 517 | 0.0 | 575 |
| MS.gene059632.t1 | AT1G79860 | 62.582 | 457 | 127 | 11 | 78 | 527 | 96 | 515 | 0.0 | 541 |
| MS.gene059632.t1 | AT1G52240 | 61.894 | 454 | 150 | 7 | 78 | 527 | 108 | 542 | 0.0 | 538 |
| MS.gene059632.t1 | AT5G19560 | 57.328 | 464 | 176 | 7 | 73 | 527 | 43 | 493 | 3.36e-174 | 501 |
| MS.gene059632.t1 | AT5G19560 | 57.328 | 464 | 176 | 7 | 73 | 527 | 43 | 493 | 3.36e-174 | 501 |
| MS.gene059632.t1 | AT5G19560 | 57.328 | 464 | 176 | 7 | 73 | 527 | 62 | 512 | 6.93e-174 | 500 |
| MS.gene059632.t1 | AT3G16130 | 50.962 | 520 | 213 | 11 | 19 | 525 | 44 | 534 | 3.12e-164 | 477 |
| MS.gene059632.t1 | AT5G19560 | 63.855 | 332 | 116 | 2 | 59 | 387 | 48 | 378 | 3.26e-148 | 430 |
| MS.gene059632.t1 | AT5G02010 | 48.798 | 416 | 189 | 6 | 73 | 465 | 69 | 483 | 9.81e-138 | 409 |
| MS.gene059632.t1 | AT4G38430 | 52.073 | 386 | 165 | 5 | 73 | 439 | 89 | 473 | 4.01e-135 | 403 |
| MS.gene059632.t1 | AT5G05940 | 50.943 | 371 | 160 | 4 | 74 | 423 | 102 | 471 | 1.35e-128 | 388 |
| MS.gene059632.t1 | AT5G19560 | 55.108 | 372 | 145 | 7 | 165 | 527 | 5 | 363 | 7.10e-128 | 377 |
| MS.gene059632.t1 | AT4G00460 | 50.000 | 364 | 163 | 6 | 74 | 419 | 104 | 466 | 8.74e-122 | 366 |
| MS.gene059632.t1 | AT4G00460 | 50.000 | 364 | 163 | 6 | 74 | 419 | 104 | 466 | 8.74e-122 | 366 |
| MS.gene059632.t1 | AT3G55660 | 45.192 | 416 | 190 | 7 | 37 | 418 | 57 | 468 | 2.08e-118 | 361 |
| MS.gene059632.t1 | AT1G01700 | 44.731 | 427 | 207 | 8 | 20 | 419 | 54 | 478 | 3.88e-117 | 354 |
| MS.gene059632.t1 | AT2G45890 | 47.185 | 373 | 170 | 6 | 74 | 424 | 93 | 460 | 2.86e-114 | 346 |
| MS.gene059632.t1 | AT1G01700 | 41.794 | 457 | 207 | 9 | 20 | 419 | 54 | 508 | 1.60e-110 | 338 |
| MS.gene059632.t1 | AT5G05940 | 49.552 | 335 | 147 | 4 | 74 | 387 | 102 | 435 | 5.86e-110 | 336 |
| MS.gene059632.t1 | AT3G55660 | 43.636 | 385 | 179 | 7 | 37 | 387 | 57 | 437 | 3.86e-103 | 317 |
| MS.gene059632.t1 | AT4G00460 | 47.401 | 327 | 153 | 6 | 111 | 419 | 8 | 333 | 2.34e-101 | 309 |
| MS.gene059632.t1 | AT1G31650 | 42.204 | 372 | 201 | 5 | 74 | 434 | 108 | 476 | 1.51e-96 | 303 |
| MS.gene059632.t1 | AT1G01700 | 41.832 | 404 | 199 | 9 | 20 | 389 | 54 | 455 | 2.60e-96 | 300 |
| MS.gene059632.t1 | AT1G31650 | 42.204 | 372 | 201 | 5 | 74 | 434 | 136 | 504 | 4.05e-96 | 303 |
| MS.gene059632.t1 | AT4G00460 | 52.535 | 217 | 93 | 3 | 74 | 281 | 104 | 319 | 4.23e-73 | 236 |
| MS.gene059632.t1 | AT1G01700 | 45.000 | 280 | 134 | 5 | 20 | 281 | 54 | 331 | 5.93e-71 | 231 |
| MS.gene059632.t1 | AT1G01700 | 45.000 | 280 | 134 | 5 | 20 | 281 | 54 | 331 | 5.93e-71 | 231 |
Find 110 sgRNAs with CRISPR-Local
Find 204 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTGGTTAACATTGTCTTTC+TGG | 0.080935 | 6.1:+76502608 | None:intergenic |
| TTGTTATCACCTTGTTATAT+TGG | 0.258055 | 6.1:+76502016 | None:intergenic |
| CCATGGCTGCTTTAAGTACT+TGG | 0.282520 | 6.1:+76502590 | None:intergenic |
| TTGAAGCTTCTATTGTAATA+TGG | 0.285225 | 6.1:-76502194 | MS.gene059632:CDS |
| TTAGAGATCAAAATGAATTC+TGG | 0.294452 | 6.1:-76502762 | MS.gene059632:CDS |
| AATGTAATTATAGGACATTT+TGG | 0.333210 | 6.1:-76502791 | MS.gene059632:intron |
| AATGACTCTCTCAGATTTCA+TGG | 0.338997 | 6.1:-76501381 | MS.gene059632:CDS |
| ATCCCACCATCCTCAGAGTT+TGG | 0.353088 | 6.1:+76501437 | None:intergenic |
| AGATTTGCTAAGCTTCTTCT+AGG | 0.357290 | 6.1:-76504079 | MS.gene059632:CDS |
| ATTATACCAGTTGGTGGCTT+AGG | 0.357434 | 6.1:+76504607 | None:intergenic |
| CGATCTGCTCATGAACATTC+CGG | 0.375648 | 6.1:-76503006 | MS.gene059632:CDS |
| TATTCAAGGTTTATTTGATA+AGG | 0.386545 | 6.1:-76504788 | MS.gene059632:CDS |
| GTTGGAGGAACTTTAACAAC+TGG | 0.388069 | 6.1:+76502667 | None:intergenic |
| GTTGTTAAAGTTCCTCCAAC+AGG | 0.390259 | 6.1:-76502664 | MS.gene059632:CDS |
| ATATTGAGAGCAACTCCTAT+TGG | 0.393413 | 6.1:+76504670 | None:intergenic |
| TATACCAGCAAGGTTTGTTA+TGG | 0.393796 | 6.1:+76504000 | None:intergenic |
| TACTGTGGAATACTTTGATC+CGG | 0.414609 | 6.1:-76502280 | MS.gene059632:CDS |
| CGGCTGGATGCCGCCAACGA+TGG | 0.421001 | 6.1:+76501503 | None:intergenic |
| ATTCTCGTTGGATTCTTTGC+CGG | 0.425301 | 6.1:-76501477 | MS.gene059632:CDS |
| TTCAGAAACTGATTTGATGA+AGG | 0.432350 | 6.1:-76504104 | MS.gene059632:intron |
| TGGAAAATCTTCATGGAGTT+CGG | 0.432609 | 6.1:-76502151 | MS.gene059632:CDS |
| GTCTTCCTTTCTTGAGACAT+TGG | 0.438853 | 6.1:+76503591 | None:intergenic |
| ATAAAGATGGAAAATCTTCA+TGG | 0.441204 | 6.1:-76502158 | MS.gene059632:CDS |
| AAGCTGAGTGTTTACCTCCA+TGG | 0.443142 | 6.1:+76503476 | None:intergenic |
| TTTGATAAGGATCATGATGA+AGG | 0.446490 | 6.1:-76504775 | MS.gene059632:CDS |
| TATCAGATGTAGCTGTGAAA+TGG | 0.447982 | 6.1:-76502639 | MS.gene059632:CDS |
| TTCAAGAGTAATAGAAAGCT+TGG | 0.450795 | 6.1:-76501585 | MS.gene059632:CDS |
| ATGATCAAACAAGAGTTTCC+AGG | 0.451515 | 6.1:-76502072 | MS.gene059632:CDS |
| AATGCCATAACAAACCTTGC+TGG | 0.452672 | 6.1:-76504004 | MS.gene059632:intron |
| AGTGAAGACTGTGGAAGTCC+TGG | 0.455369 | 6.1:+76502054 | None:intergenic |
| AAATGGTGTTTCTTCAGCAC+TGG | 0.456274 | 6.1:-76504035 | MS.gene059632:CDS |
| AAGTTCTTGACCTCAAGAAT+AGG | 0.466447 | 6.1:-76502218 | MS.gene059632:CDS |
| GACATGTCAGGTGCAGGAAA+TGG | 0.467588 | 6.1:-76504052 | MS.gene059632:CDS |
| CTTCTATTGTAATATGGAAA+AGG | 0.469644 | 6.1:-76502188 | MS.gene059632:CDS |
| CCATTGGAAACTCAGCCAAT+AGG | 0.473248 | 6.1:-76504685 | MS.gene059632:CDS |
| TCTTGAATAGCTCTCTAGAA+TGG | 0.475283 | 6.1:+76501601 | None:intergenic |
| GGACAAAAGGAGATTTGAAA+AGG | 0.479375 | 6.1:-76501355 | MS.gene059632:CDS |
| ATGCCTCCTAAGCCACCAAC+TGG | 0.479648 | 6.1:-76504613 | MS.gene059632:intron |
| CGATATTAATGTCGCGCGAT+AGG | 0.480793 | 6.1:+76501209 | None:intergenic |
| GCATCAAGCTTGCGCAAGGC+CGG | 0.484296 | 6.1:+76502987 | None:intergenic |
| TACTTGAGCATTTATTGCCA+TGG | 0.488291 | 6.1:+76502573 | None:intergenic |
| GATTTCATGGGATGGACAAA+AGG | 0.489636 | 6.1:-76501368 | MS.gene059632:CDS |
| AGAGATTCAATGTAGTTGTC+AGG | 0.493552 | 6.1:+76502532 | None:intergenic |
| AAACCTTGAATATGTTTCCC+AGG | 0.494123 | 6.1:+76504799 | None:intergenic |
| TTGAAAAGGACTAATTCTAC+AGG | 0.501607 | 6.1:-76501341 | MS.gene059632:CDS |
| GGTGGAGAAAAGAAATTGAA+TGG | 0.504792 | 6.1:-76503566 | MS.gene059632:CDS |
| ATACCAGTTGGTGGCTTAGG+AGG | 0.512969 | 6.1:+76504610 | None:intergenic |
| AAAAGGAAGATGAATAAAGA+TGG | 0.515789 | 6.1:-76502171 | MS.gene059632:CDS |
| CTCGTTGGATTCTTTGCCGG+TGG | 0.515807 | 6.1:-76501474 | MS.gene059632:CDS |
| AACTCTGAGGATGGTGGGAT+AGG | 0.517108 | 6.1:-76501434 | MS.gene059632:CDS |
| AAGAATCCAACGAGAATCTC+CGG | 0.517591 | 6.1:+76501483 | None:intergenic |
| CATTGCATCAAGCTTGCGCA+AGG | 0.519705 | 6.1:+76502983 | None:intergenic |
| CTGAGGATGGTGGGATAGGA+AGG | 0.520302 | 6.1:-76501430 | MS.gene059632:CDS |
| GTCAAGAACTTTATGTTCTG+TGG | 0.529156 | 6.1:+76502230 | None:intergenic |
| CTCTCTCAGATTTCATGGGA+TGG | 0.531255 | 6.1:-76501376 | MS.gene059632:CDS |
| CTCAAAGAAAGAGTGACAAA+TGG | 0.531945 | 6.1:-76502696 | MS.gene059632:CDS |
| CCTATTGGCTGAGTTTCCAA+TGG | 0.532644 | 6.1:+76504685 | None:intergenic |
| TCCTTAGCTAACTGTTGTGA+TGG | 0.535551 | 6.1:+76503507 | None:intergenic |
| ATCCCTGGGAAACATATTCA+AGG | 0.535882 | 6.1:-76504802 | MS.gene059632:CDS |
| GGAGAAGACATGTCAGGTGC+AGG | 0.536981 | 6.1:-76504058 | MS.gene059632:CDS |
| GGCAATAAGCATGGAGAAGA+GGG | 0.538220 | 6.1:-76502130 | MS.gene059632:CDS |
| CATCGTTGGCGGCATCCAGC+CGG | 0.540395 | 6.1:-76501502 | MS.gene059632:CDS |
| ACTGTGGAATACTTTGATCC+GGG | 0.540800 | 6.1:-76502279 | MS.gene059632:CDS |
| GGAGATGTTTGATCAGCCAC+CGG | 0.544079 | 6.1:+76501458 | None:intergenic |
| TGGAGCCAATGTCTCAAGAA+AGG | 0.548345 | 6.1:-76503596 | MS.gene059632:CDS |
| CTTCTAGGAGAAGACATGTC+AGG | 0.550196 | 6.1:-76504064 | MS.gene059632:CDS |
| CTCCAAACTCTGAGGATGGT+GGG | 0.553349 | 6.1:-76501439 | MS.gene059632:CDS |
| AGTTTCCAATGGAATATCAC+TGG | 0.553463 | 6.1:+76504696 | None:intergenic |
| TGCTCAAGTACTATCCGAGA+TGG | 0.555455 | 6.1:-76502560 | MS.gene059632:CDS |
| AACCTTGAATATGTTTCCCA+GGG | 0.559119 | 6.1:+76504800 | None:intergenic |
| CCAAGTACTTAAAGCAGCCA+TGG | 0.563065 | 6.1:-76502590 | MS.gene059632:CDS |
| TCACAACAGTTAGCTAAGGA+TGG | 0.570145 | 6.1:-76503504 | MS.gene059632:CDS |
| TCTCCAAACTCTGAGGATGG+TGG | 0.572008 | 6.1:-76501440 | MS.gene059632:CDS |
| ATGACTCTCTCAGATTTCAT+GGG | 0.572048 | 6.1:-76501380 | MS.gene059632:CDS |
| GCTACATCTGATAACCCTGT+TGG | 0.573819 | 6.1:+76502649 | None:intergenic |
| CGGCAATAAGCATGGAGAAG+AGG | 0.574710 | 6.1:-76502131 | MS.gene059632:CDS |
| CTACATTGAATCTCTCCCTA+AGG | 0.579199 | 6.1:-76502524 | MS.gene059632:intron |
| AAGCTTCAATCCTATTCTTG+AGG | 0.579814 | 6.1:+76502208 | None:intergenic |
| ATGGAGTTCGGCAATAAGCA+TGG | 0.581044 | 6.1:-76502139 | MS.gene059632:CDS |
| ATCCAACGAGAATCTCCGGC+TGG | 0.581392 | 6.1:+76501487 | None:intergenic |
| ATCCAGCCGGAGATTCTCGT+TGG | 0.585511 | 6.1:-76501489 | MS.gene059632:CDS |
| GACAAAGAATCCATCGTTGG+CGG | 0.587221 | 6.1:-76501513 | MS.gene059632:CDS |
| ATATACCAGTGATATTCCAT+TGG | 0.587677 | 6.1:-76504701 | MS.gene059632:CDS |
| TTGATAAGGATCATGATGAA+GGG | 0.588470 | 6.1:-76504774 | MS.gene059632:CDS |
| AAATCTGAGAGAGTCATTGA+TGG | 0.588625 | 6.1:+76501386 | None:intergenic |
| ACATCTCCAAACTCTGAGGA+TGG | 0.591064 | 6.1:-76501443 | MS.gene059632:CDS |
| GTTGTCAGGTATCTCCATCT+CGG | 0.591503 | 6.1:+76502546 | None:intergenic |
| ATTGTTGAGAGGAATTGTCC+CGG | 0.601613 | 6.1:+76502261 | None:intergenic |
| TCCATCACAACAGTTAGCTA+AGG | 0.603193 | 6.1:-76503508 | MS.gene059632:CDS |
| ACATCTGATAACCCTGTTGG+AGG | 0.604210 | 6.1:+76502652 | None:intergenic |
| TTGTTAAAGTTCCTCCAACA+GGG | 0.606551 | 6.1:-76502663 | MS.gene059632:CDS |
| CAGCAAAATCCAATATAACA+AGG | 0.607276 | 6.1:-76502025 | MS.gene059632:intron |
| AAAAGTGATGAGGAAGCTGA+AGG | 0.607695 | 6.1:-76502730 | MS.gene059632:CDS |
| TGTCTCAAGAAAGGAAGACT+AGG | 0.613102 | 6.1:-76503587 | MS.gene059632:CDS |
| TTGGAGGAACTTTAACAACT+GGG | 0.617010 | 6.1:+76502668 | None:intergenic |
| CTCAAGAAAGGAAGACTAGG+TGG | 0.617206 | 6.1:-76503584 | MS.gene059632:CDS |
| AATGACAAAGAATCCATCGT+TGG | 0.619614 | 6.1:-76501516 | MS.gene059632:CDS |
| AAAGAAAGAGTGACAAATGG+TGG | 0.626399 | 6.1:-76502693 | MS.gene059632:CDS |
| CCAAAATGATCACAGGATGT+GGG | 0.631669 | 6.1:-76501629 | MS.gene059632:intron |
| GGGACAATTCCTCTCAACAA+TGG | 0.632556 | 6.1:-76502259 | MS.gene059632:CDS |
| CAGAATGGTAGAGAAAGCCT+TGG | 0.634845 | 6.1:-76502324 | MS.gene059632:CDS |
| GATCTATAAGTGCATTACTG+TGG | 0.648265 | 6.1:-76502295 | MS.gene059632:CDS |
| AGCTAAGGATGGATCAACCA+TGG | 0.652900 | 6.1:-76503493 | MS.gene059632:CDS |
| ATTTGTAGATCATGACGACT+CGG | 0.653527 | 6.1:-76503037 | MS.gene059632:intron |
| ACTTATAGATCGACTCACCA+AGG | 0.679802 | 6.1:+76502307 | None:intergenic |
| TGGTCATGTCCATTGTTGAG+AGG | 0.679809 | 6.1:+76502250 | None:intergenic |
| TCAAACATCTCCAAACTCTG+AGG | 0.682927 | 6.1:-76501447 | MS.gene059632:CDS |
| TCTGAGAGAGTCATTGATGG+TGG | 0.705269 | 6.1:+76501389 | None:intergenic |
| CTGATATCAAGTGAAGACTG+TGG | 0.722584 | 6.1:+76502045 | None:intergenic |
| TAAGGATGGATCAACCATGG+AGG | 0.766138 | 6.1:-76503490 | MS.gene059632:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATAAAAACTATAACAA+AGG | - | chr6.1:76501819-76501838 | MS.gene059632:intron | 10.0% |
| !! | TATTTAATTAATGTATATCA+TGG | - | chr6.1:76502578-76502597 | MS.gene059632:CDS | 10.0% |
| !!! | GTTTTTATCAATTTAAAAAA+AGG | - | chr6.1:76501738-76501757 | MS.gene059632:intron | 10.0% |
| !! | ATTTAAAAAAAGGTAATAAG+TGG | - | chr6.1:76501748-76501767 | MS.gene059632:intron | 15.0% |
| !! | TCTAATAGTAATTAAGAAAA+AGG | + | chr6.1:76503194-76503213 | None:intergenic | 15.0% |
| !! | TCTTAATTACTATTAGAATT+TGG | - | chr6.1:76503197-76503216 | MS.gene059632:intron | 15.0% |
| !! | TTTAAATAATATCGTCTAAA+GGG | + | chr6.1:76504194-76504213 | None:intergenic | 15.0% |
| !!! | AAAAATCACAATTTATTTTG+TGG | - | chr6.1:76501614-76501633 | MS.gene059632:CDS | 15.0% |
| !!! | TTTTTAAATGAAAACAACAT+TGG | - | chr6.1:76502350-76502369 | MS.gene059632:intron | 15.0% |
| !! | AAAAAAAGAACAAACAAGAT+TGG | + | chr6.1:76504313-76504332 | None:intergenic | 20.0% |
| !! | GCATAATAACTTAAAATGTA+GGG | + | chr6.1:76501450-76501469 | None:intergenic | 20.0% |
| !! | GTTTAAATAATATCGTCTAA+AGG | + | chr6.1:76504195-76504214 | None:intergenic | 20.0% |
| !! | TATTCAAGGTTTATTTGATA+AGG | - | chr6.1:76501237-76501256 | MS.gene059632:CDS | 20.0% |
| !! | TGAGTTTAATGTAAAGTTAT+TGG | + | chr6.1:76504093-76504112 | None:intergenic | 20.0% |
| !! | TGCATAATAACTTAAAATGT+AGG | + | chr6.1:76501451-76501470 | None:intergenic | 20.0% |
| !! | TTTACATTAAACTCAAAACA+CGG | - | chr6.1:76504098-76504117 | MS.gene059632:CDS | 20.0% |
| !!! | AATGTAATTATAGGACATTT+TGG | - | chr6.1:76503234-76503253 | MS.gene059632:intron | 20.0% |
| !!! | AATTAAGAAAAAGGTATGTT+TGG | + | chr6.1:76503185-76503204 | None:intergenic | 20.0% |
| !!! | TCCAAGTAATAATTTTTCTT+CGG | + | chr6.1:76504765-76504784 | None:intergenic | 20.0% |
| !!! | TTGTATATATTTTCCAAAAG+TGG | - | chr6.1:76502092-76502111 | MS.gene059632:CDS | 20.0% |
| !!! | TTTTTGATGATATTCGAATT+TGG | + | chr6.1:76502809-76502828 | None:intergenic | 20.0% |
| ! | AAAAGGAAGATGAATAAAGA+TGG | - | chr6.1:76503854-76503873 | MS.gene059632:intron | 25.0% |
| ! | AAGGTAATATAATTAAGGGT+CGG | - | chr6.1:76503520-76503539 | MS.gene059632:CDS | 25.0% |
| ! | ACCCTTAATTATATTACCTT+AGG | + | chr6.1:76503520-76503539 | None:intergenic | 25.0% |
| ! | ACCGAAGAAAAATTATTACT+TGG | - | chr6.1:76504761-76504780 | MS.gene059632:CDS | 25.0% |
| ! | ACTTATTTGAACTTATCTAC+TGG | + | chr6.1:76503158-76503177 | None:intergenic | 25.0% |
| ! | ATAAAGATGGAAAATCTTCA+TGG | - | chr6.1:76503867-76503886 | MS.gene059632:intron | 25.0% |
| ! | CAAAAATGTAGTTACTTACA+AGG | + | chr6.1:76503070-76503089 | None:intergenic | 25.0% |
| ! | CCCTAAGGTAATATAATTAA+GGG | - | chr6.1:76503516-76503535 | MS.gene059632:CDS | 25.0% |
| ! | CCCTTAATTATATTACCTTA+GGG | + | chr6.1:76503519-76503538 | None:intergenic | 25.0% |
| ! | CTTCTATTGTAATATGGAAA+AGG | - | chr6.1:76503837-76503856 | MS.gene059632:intron | 25.0% |
| ! | CTTTATGGCAATGTAATTAT+AGG | - | chr6.1:76503225-76503244 | MS.gene059632:intron | 25.0% |
| ! | TAATAGATTGTTTATCGTTG+AGG | - | chr6.1:76504123-76504142 | MS.gene059632:intron | 25.0% |
| ! | TAGAATTTGGACTAACTTTA+TGG | - | chr6.1:76503210-76503229 | MS.gene059632:intron | 25.0% |
| ! | TCCCTAAGGTAATATAATTA+AGG | - | chr6.1:76503515-76503534 | MS.gene059632:CDS | 25.0% |
| ! | TTAGAGATCAAAATGAATTC+TGG | - | chr6.1:76503263-76503282 | MS.gene059632:intron | 25.0% |
| ! | TTGAAGCTTCTATTGTAATA+TGG | - | chr6.1:76503831-76503850 | MS.gene059632:intron | 25.0% |
| !! | AATGTAAAGTTATTGGTGTT+TGG | + | chr6.1:76504086-76504105 | None:intergenic | 25.0% |
| !! | ATCTATTTTCTTGTGAATCA+AGG | - | chr6.1:76504335-76504354 | MS.gene059632:intron | 25.0% |
| !! | CTTAGTTCATGACTTTTAAA+TGG | + | chr6.1:76501497-76501516 | None:intergenic | 25.0% |
| !! | TTAGAATATGTTTCCACTTT+TGG | + | chr6.1:76502108-76502127 | None:intergenic | 25.0% |
| !! | TTGTTATCACCTTGTTATAT+TGG | + | chr6.1:76504012-76504031 | None:intergenic | 25.0% |
| !! | TTTTTATAAGCTCTCTCAAA+CGG | + | chr6.1:76503595-76503614 | None:intergenic | 25.0% |
| !!! | ATTTATTTTGTGGTGTTAGT+CGG | - | chr6.1:76501624-76501643 | MS.gene059632:intron | 25.0% |
| !!! | GAAAAAGTTTTGAATAAGCT+TGG | - | chr6.1:76504735-76504754 | MS.gene059632:CDS | 25.0% |
| !!! | GATTGATGATGTTTTATATG+TGG | - | chr6.1:76504482-76504501 | MS.gene059632:intron | 25.0% |
| !!! | TTTTTTTTGTCTCTACATGA+AGG | - | chr6.1:76501849-76501868 | MS.gene059632:intron | 25.0% |
| AAAGTCATGAACTAAGATCA+TGG | - | chr6.1:76501501-76501520 | MS.gene059632:CDS | 30.0% | |
| AACTTTAATCGTAACTTCGT+AGG | - | chr6.1:76502230-76502249 | MS.gene059632:CDS | 30.0% | |
| AAGTCATGAACTAAGATCAT+GGG | - | chr6.1:76501502-76501521 | MS.gene059632:CDS | 30.0% | |
| AGAAAAATTATACCAGTTGG+TGG | + | chr6.1:76501427-76501446 | None:intergenic | 30.0% | |
| ATATACCAGTGATATTCCAT+TGG | - | chr6.1:76501324-76501343 | MS.gene059632:CDS | 30.0% | |
| CACTGTTGTTACTCTATATT+CGG | - | chr6.1:76504257-76504276 | MS.gene059632:intron | 30.0% | |
| CAGCAAAATCCAATATAACA+AGG | - | chr6.1:76504000-76504019 | MS.gene059632:intron | 30.0% | |
| CTTTATGGTAGGAAATGAAA+TGG | - | chr6.1:76502067-76502086 | MS.gene059632:CDS | 30.0% | |
| CTTTCATATCTTTGTCAGAA+TGG | - | chr6.1:76503686-76503705 | MS.gene059632:intron | 30.0% | |
| GTATCCTAATTGCATATATG+CGG | - | chr6.1:76502761-76502780 | MS.gene059632:CDS | 30.0% | |
| TTCAAGAGTAATAGAAAGCT+TGG | - | chr6.1:76504440-76504459 | MS.gene059632:intron | 30.0% | |
| TTCCTACCATAAAGATTTGA+GGG | + | chr6.1:76502061-76502080 | None:intergenic | 30.0% | |
| TTGAAAAGGACTAATTCTAC+AGG | - | chr6.1:76504684-76504703 | MS.gene059632:CDS | 30.0% | |
| TTGATAAGGATCATGATGAA+GGG | - | chr6.1:76501251-76501270 | MS.gene059632:CDS | 30.0% | |
| TTTCCTACCATAAAGATTTG+AGG | + | chr6.1:76502062-76502081 | None:intergenic | 30.0% | |
| TTTGATAAGGATCATGATGA+AGG | - | chr6.1:76501250-76501269 | MS.gene059632:CDS | 30.0% | |
| ! | ATCTAGAAATTTGAAGTCGT+GGG | + | chr6.1:76502925-76502944 | None:intergenic | 30.0% |
| ! | CAAAAAAGTATATACCAGCA+AGG | + | chr6.1:76502038-76502057 | None:intergenic | 30.0% |
| ! | TTAAGTTGCATATCCAAACA+GGG | + | chr6.1:76503093-76503112 | None:intergenic | 30.0% |
| ! | TTTTTGCCCTCAAATCTTTA+TGG | - | chr6.1:76502052-76502071 | MS.gene059632:CDS | 30.0% |
| !! | TGGCTTATACAGTTTTATCA+AGG | - | chr6.1:76504460-76504479 | MS.gene059632:intron | 30.0% |
| !! | TTCAGAAACTGATTTGATGA+AGG | - | chr6.1:76501921-76501940 | MS.gene059632:intron | 30.0% |
| !! | TTTTGGAGAACAATCAAAGT+TGG | - | chr6.1:76502409-76502428 | MS.gene059632:intron | 30.0% |
| AAAAACGCTTAATGATTCCG+CGG | - | chr6.1:76503613-76503632 | MS.gene059632:CDS | 35.0% | |
| AAACCTTGAATATGTTTCCC+AGG | + | chr6.1:76501229-76501248 | None:intergenic | 35.0% | |
| AAAGAAAGAGTGACAAATGG+TGG | - | chr6.1:76503332-76503351 | MS.gene059632:intron | 35.0% | |
| AAATCTGAGAGAGTCATTGA+TGG | + | chr6.1:76504642-76504661 | None:intergenic | 35.0% | |
| AACCTTGAATATGTTTCCCA+GGG | + | chr6.1:76501228-76501247 | None:intergenic | 35.0% | |
| AAGCTTCAATCCTATTCTTG+AGG | + | chr6.1:76503820-76503839 | None:intergenic | 35.0% | |
| AAGTTCTTGACCTCAAGAAT+AGG | - | chr6.1:76503807-76503826 | MS.gene059632:intron | 35.0% | |
| AATGACAAAGAATCCATCGT+TGG | - | chr6.1:76504509-76504528 | MS.gene059632:intron | 35.0% | |
| AATGACTCTCTCAGATTTCA+TGG | - | chr6.1:76504644-76504663 | MS.gene059632:CDS | 35.0% | |
| AGAGATTCAATGTAGTTGTC+AGG | + | chr6.1:76503496-76503515 | None:intergenic | 35.0% | |
| AGTTTCCAATGGAATATCAC+TGG | + | chr6.1:76501332-76501351 | None:intergenic | 35.0% | |
| ATATTGAGAGCAACTCCTAT+TGG | + | chr6.1:76501358-76501377 | None:intergenic | 35.0% | |
| ATGACTCTCTCAGATTTCAT+GGG | - | chr6.1:76504645-76504664 | MS.gene059632:CDS | 35.0% | |
| ATGATCAAACAAGAGTTTCC+AGG | - | chr6.1:76503953-76503972 | MS.gene059632:intron | 35.0% | |
| ATTATCTCTATACCATACCG+CGG | + | chr6.1:76503633-76503652 | None:intergenic | 35.0% | |
| ATTCTCCACATTCAGACAAT+TGG | - | chr6.1:76502624-76502643 | MS.gene059632:CDS | 35.0% | |
| ATTCTGCTTCCATACGATTA+GGG | - | chr6.1:76502601-76502620 | MS.gene059632:CDS | 35.0% | |
| ATTTGTAGATCATGACGACT+CGG | - | chr6.1:76502988-76503007 | MS.gene059632:CDS | 35.0% | |
| CAGTAGTTGTTTGATCAAGA+GGG | + | chr6.1:76502741-76502760 | None:intergenic | 35.0% | |
| CTCAAAGAAAGAGTGACAAA+TGG | - | chr6.1:76503329-76503348 | MS.gene059632:intron | 35.0% | |
| CTTGGTTAACATTGTCTTTC+TGG | + | chr6.1:76503420-76503439 | None:intergenic | 35.0% | |
| GATCTATAAGTGCATTACTG+TGG | - | chr6.1:76503730-76503749 | MS.gene059632:intron | 35.0% | |
| GATTGTTTATCGTTGAGGTA+TGG | - | chr6.1:76504128-76504147 | MS.gene059632:intron | 35.0% | |
| GCAACTTAACTATACGCTTA+TGG | - | chr6.1:76503104-76503123 | MS.gene059632:intron | 35.0% | |
| GCTCATAGTTTACTGATAAG+TGG | - | chr6.1:76504150-76504169 | MS.gene059632:intron | 35.0% | |
| GGACAAAAGGAGATTTGAAA+AGG | - | chr6.1:76504670-76504689 | MS.gene059632:CDS | 35.0% | |
| GGGAGAAAAATTATACCAGT+TGG | + | chr6.1:76501430-76501449 | None:intergenic | 35.0% | |
| GGTGGAGAAAAGAAATTGAA+TGG | - | chr6.1:76502459-76502478 | MS.gene059632:intron | 35.0% | |
| GTATGTCTCAAAAAGTGATG+AGG | - | chr6.1:76503285-76503304 | MS.gene059632:intron | 35.0% | |
| GTCAAGAACTTTATGTTCTG+TGG | + | chr6.1:76503798-76503817 | None:intergenic | 35.0% | |
| GTCACAGATATATCTAGTGA+TGG | + | chr6.1:76502948-76502967 | None:intergenic | 35.0% | |
| TACTGTGGAATACTTTGATC+CGG | - | chr6.1:76503745-76503764 | MS.gene059632:intron | 35.0% | |
| TACTTGAGCATTTATTGCCA+TGG | + | chr6.1:76503455-76503474 | None:intergenic | 35.0% | |
| TATCAGATGTAGCTGTGAAA+TGG | - | chr6.1:76503386-76503405 | MS.gene059632:intron | 35.0% | |
| TGGAAAATCTTCATGGAGTT+CGG | - | chr6.1:76503874-76503893 | MS.gene059632:intron | 35.0% | |
| TTCTCCACATTCAGACAATT+GGG | - | chr6.1:76502625-76502644 | MS.gene059632:CDS | 35.0% | |
| TTCTCCGCATATATGCAATT+AGG | + | chr6.1:76502768-76502787 | None:intergenic | 35.0% | |
| TTGGAGGAACTTTAACAACT+GGG | + | chr6.1:76503360-76503379 | None:intergenic | 35.0% | |
| TTGTTAAAGTTCCTCCAACA+GGG | - | chr6.1:76503362-76503381 | MS.gene059632:intron | 35.0% | |
| ! | AACTACATTTTTGCCCTGTT+TGG | - | chr6.1:76503077-76503096 | MS.gene059632:intron | 35.0% |
| ! | GATCTAGAAATTTGAAGTCG+TGG | + | chr6.1:76502926-76502945 | None:intergenic | 35.0% |
| ! | GTTAAGTTGCATATCCAAAC+AGG | + | chr6.1:76503094-76503113 | None:intergenic | 35.0% |
| ! | TCTTGAATAGCTCTCTAGAA+TGG | + | chr6.1:76504427-76504446 | None:intergenic | 35.0% |
| ! | TTCCATGTAGCATCTGTTTT+TGG | - | chr6.1:76502392-76502411 | MS.gene059632:intron | 35.0% |
| !! | AGATTTGCTAAGCTTCTTCT+AGG | - | chr6.1:76501946-76501965 | MS.gene059632:intron | 35.0% |
| !! | CATGACATGTGGTTTGTTAT+AGG | - | chr6.1:76502144-76502163 | MS.gene059632:CDS | 35.0% |
| !! | TATACCAGCAAGGTTTGTTA+TGG | + | chr6.1:76502028-76502047 | None:intergenic | 35.0% |
| AAAAGTGATGAGGAAGCTGA+AGG | - | chr6.1:76503295-76503314 | MS.gene059632:intron | 40.0% | |
| AAATGGTGTTTCTTCAGCAC+TGG | - | chr6.1:76501990-76502009 | MS.gene059632:intron | 40.0% | |
| AAGAATCCAACGAGAATCTC+CGG | + | chr6.1:76504545-76504564 | None:intergenic | 40.0% | |
| AATGCCATAACAAACCTTGC+TGG | - | chr6.1:76502021-76502040 | MS.gene059632:intron | 40.0% | |
| ACTGCTTCCAAAATGATCAC+AGG | - | chr6.1:76504389-76504408 | MS.gene059632:intron | 40.0% | |
| ACTGTGGAATACTTTGATCC+GGG | - | chr6.1:76503746-76503765 | MS.gene059632:intron | 40.0% | |
| ATCCCTGGGAAACATATTCA+AGG | - | chr6.1:76501223-76501242 | MS.gene059632:CDS | 40.0% | |
| ATTCTCGTTGGATTCTTTGC+CGG | - | chr6.1:76504548-76504567 | MS.gene059632:intron | 40.0% | |
| ATTGTTGAGAGGAATTGTCC+CGG | + | chr6.1:76503767-76503786 | None:intergenic | 40.0% | |
| CAAGATTGGATCACGAAGTT+TGG | + | chr6.1:76504299-76504318 | None:intergenic | 40.0% | |
| CCAAAATGATCACAGGATGT+GGG | - | chr6.1:76504396-76504415 | MS.gene059632:intron | 40.0% | |
| CCAGTAGTTGTTTGATCAAG+AGG | + | chr6.1:76502742-76502761 | None:intergenic | 40.0% | |
| CCTCTTGATCAAACAACTAC+TGG | - | chr6.1:76502739-76502758 | MS.gene059632:CDS | 40.0% | |
| CTACATTGAATCTCTCCCTA+AGG | - | chr6.1:76503501-76503520 | MS.gene059632:CDS | 40.0% | |
| CTCCAAAAACAGATGCTACA+TGG | + | chr6.1:76502397-76502416 | None:intergenic | 40.0% | |
| CTGATATCAAGTGAAGACTG+TGG | + | chr6.1:76503983-76504002 | None:intergenic | 40.0% | |
| GATTCTGCTTCCATACGATT+AGG | - | chr6.1:76502600-76502619 | MS.gene059632:CDS | 40.0% | |
| GATTTCATGGGATGGACAAA+AGG | - | chr6.1:76504657-76504676 | MS.gene059632:CDS | 40.0% | |
| GTCTTCCTTTCTTGAGACAT+TGG | + | chr6.1:76502437-76502456 | None:intergenic | 40.0% | |
| GTTACTCTATATTCGGAGAC+TGG | - | chr6.1:76504264-76504283 | MS.gene059632:intron | 40.0% | |
| GTTGGAGGAACTTTAACAAC+TGG | + | chr6.1:76503361-76503380 | None:intergenic | 40.0% | |
| GTTGTTAAAGTTCCTCCAAC+AGG | - | chr6.1:76503361-76503380 | MS.gene059632:intron | 40.0% | |
| TCAAACATCTCCAAACTCTG+AGG | - | chr6.1:76504578-76504597 | MS.gene059632:intron | 40.0% | |
| TCACAACAGTTAGCTAAGGA+TGG | - | chr6.1:76502521-76502540 | MS.gene059632:intron | 40.0% | |
| TCCAAAATGATCACAGGATG+TGG | - | chr6.1:76504395-76504414 | MS.gene059632:intron | 40.0% | |
| TCCATCACAACAGTTAGCTA+AGG | - | chr6.1:76502517-76502536 | MS.gene059632:intron | 40.0% | |
| TCCTTAGCTAACTGTTGTGA+TGG | + | chr6.1:76502521-76502540 | None:intergenic | 40.0% | |
| TGCCCTCAAATCTTTATGGT+AGG | - | chr6.1:76502056-76502075 | MS.gene059632:CDS | 40.0% | |
| TGTCTCAAGAAAGGAAGACT+AGG | - | chr6.1:76502438-76502457 | MS.gene059632:intron | 40.0% | |
| TTCAGACAATTGGGACAATG+TGG | - | chr6.1:76502634-76502653 | MS.gene059632:CDS | 40.0% | |
| TTGTCCCAATTGTCTGAATG+TGG | + | chr6.1:76502632-76502651 | None:intergenic | 40.0% | |
| ! | ACTTATAGATCGACTCACCA+AGG | + | chr6.1:76503721-76503740 | None:intergenic | 40.0% |
| !! | ATTATACCAGTTGGTGGCTT+AGG | + | chr6.1:76501421-76501440 | None:intergenic | 40.0% |
| AAGCTGAGTGTTTACCTCCA+TGG | + | chr6.1:76502552-76502571 | None:intergenic | 45.0% | |
| ACATCTGATAACCCTGTTGG+AGG | + | chr6.1:76503376-76503395 | None:intergenic | 45.0% | |
| ACCGTCCGATCATGATCAAA+CGG | + | chr6.1:76502660-76502679 | None:intergenic | 45.0% | |
| AGCTAAGGATGGATCAACCA+TGG | - | chr6.1:76502532-76502551 | MS.gene059632:CDS | 45.0% | |
| ATGGAGTTCGGCAATAAGCA+TGG | - | chr6.1:76503886-76503905 | MS.gene059632:intron | 45.0% | |
| CAGAATGGTAGAGAAAGCCT+TGG | - | chr6.1:76503701-76503720 | MS.gene059632:intron | 45.0% | |
| CCAAGTACTTAAAGCAGCCA+TGG | - | chr6.1:76503435-76503454 | MS.gene059632:intron | 45.0% | |
| CCATTGGAAACTCAGCCAAT+AGG | - | chr6.1:76501340-76501359 | MS.gene059632:CDS | 45.0% | |
| CGATCTGCTCATGAACATTC+CGG | - | chr6.1:76503019-76503038 | MS.gene059632:CDS | 45.0% | |
| CTCAAGAAAGGAAGACTAGG+TGG | - | chr6.1:76502441-76502460 | MS.gene059632:intron | 45.0% | |
| CTCTCTCAGATTTCATGGGA+TGG | - | chr6.1:76504649-76504668 | MS.gene059632:CDS | 45.0% | |
| GACAAAGAATCCATCGTTGG+CGG | - | chr6.1:76504512-76504531 | MS.gene059632:intron | 45.0% | |
| GCTACATCTGATAACCCTGT+TGG | + | chr6.1:76503379-76503398 | None:intergenic | 45.0% | |
| GGCAATAAGCATGGAGAAGA+GGG | - | chr6.1:76503895-76503914 | MS.gene059632:intron | 45.0% | |
| GGGACAATTCCTCTCAACAA+TGG | - | chr6.1:76503766-76503785 | MS.gene059632:intron | 45.0% | |
| GTGGAGAATCCCTAATCGTA+TGG | + | chr6.1:76502613-76502632 | None:intergenic | 45.0% | |
| GTGTCACATGACATGACATG+TGG | - | chr6.1:76502133-76502152 | MS.gene059632:CDS | 45.0% | |
| GTTGTCAGGTATCTCCATCT+CGG | + | chr6.1:76503482-76503501 | None:intergenic | 45.0% | |
| TAAGGATGGATCAACCATGG+AGG | - | chr6.1:76502535-76502554 | MS.gene059632:CDS | 45.0% | |
| TCTGAGAGAGTCATTGATGG+TGG | + | chr6.1:76504639-76504658 | None:intergenic | 45.0% | |
| TGCTCAAGTACTATCCGAGA+TGG | - | chr6.1:76503465-76503484 | MS.gene059632:intron | 45.0% | |
| TGGAGCCAATGTCTCAAGAA+AGG | - | chr6.1:76502429-76502448 | MS.gene059632:intron | 45.0% | |
| TGGTCATGTCCATTGTTGAG+AGG | + | chr6.1:76503778-76503797 | None:intergenic | 45.0% | |
| TGTGGCCGTTTGATCATGAT+CGG | - | chr6.1:76502652-76502671 | MS.gene059632:CDS | 45.0% | |
| ! | ACATCTCCAAACTCTGAGGA+TGG | - | chr6.1:76504582-76504601 | MS.gene059632:intron | 45.0% |
| ! | CCATGGCTGCTTTAAGTACT+TGG | + | chr6.1:76503438-76503457 | None:intergenic | 45.0% |
| ! | CCCACATCCTGTGATCATTT+TGG | + | chr6.1:76504399-76504418 | None:intergenic | 45.0% |
| ! | CCTATTGGCTGAGTTTCCAA+TGG | + | chr6.1:76501343-76501362 | None:intergenic | 45.0% |
| ! | CTTCTAGGAGAAGACATGTC+AGG | - | chr6.1:76501961-76501980 | MS.gene059632:intron | 45.0% |
| !!! | TGAATTTTTTTTTTAATTAA+TGG | - | chr6.1:76501892-76501911 | MS.gene059632:intron | 5.0% |
| AGTGAAGACTGTGGAAGTCC+TGG | + | chr6.1:76503974-76503993 | None:intergenic | 50.0% | |
| ATCCCACCATCCTCAGAGTT+TGG | + | chr6.1:76504591-76504610 | None:intergenic | 50.0% | |
| ATTTGGACTCCACGCAGTCA+AGG | + | chr6.1:76502792-76502811 | None:intergenic | 50.0% | |
| CATTGCATCAAGCTTGCGCA+AGG | + | chr6.1:76503045-76503064 | None:intergenic | 50.0% | |
| CGCTTAATGATTCCGCGGTA+TGG | - | chr6.1:76503618-76503637 | MS.gene059632:CDS | 50.0% | |
| CGGCAATAAGCATGGAGAAG+AGG | - | chr6.1:76503894-76503913 | MS.gene059632:intron | 50.0% | |
| GACATGTCAGGTGCAGGAAA+TGG | - | chr6.1:76501973-76501992 | MS.gene059632:intron | 50.0% | |
| GCCGTTTGATCATGATCGGA+CGG | - | chr6.1:76502656-76502675 | MS.gene059632:CDS | 50.0% | |
| GGAGATGTTTGATCAGCCAC+CGG | + | chr6.1:76504570-76504589 | None:intergenic | 50.0% | |
| ! | CTCCAAACTCTGAGGATGGT+GGG | - | chr6.1:76504586-76504605 | MS.gene059632:intron | 50.0% |
| ! | TCTCCAAACTCTGAGGATGG+TGG | - | chr6.1:76504585-76504604 | MS.gene059632:intron | 50.0% |
| !! | AACTCTGAGGATGGTGGGAT+AGG | - | chr6.1:76504591-76504610 | MS.gene059632:intron | 50.0% |
| !! | ATACCAGTTGGTGGCTTAGG+AGG | + | chr6.1:76501418-76501437 | None:intergenic | 50.0% |
| AAAGGGCAGTCGAGAGTGAC+TGG | + | chr6.1:76504177-76504196 | None:intergenic | 55.0% | |
| ATCCAACGAGAATCTCCGGC+TGG | + | chr6.1:76504541-76504560 | None:intergenic | 55.0% | |
| ATCCAGCCGGAGATTCTCGT+TGG | - | chr6.1:76504536-76504555 | MS.gene059632:intron | 55.0% | |
| ATGCCTCCTAAGCCACCAAC+TGG | - | chr6.1:76501412-76501431 | MS.gene059632:CDS | 55.0% | |
| CTCGTTGGATTCTTTGCCGG+TGG | - | chr6.1:76504551-76504570 | MS.gene059632:intron | 55.0% | |
| GGAGAAGACATGTCAGGTGC+AGG | - | chr6.1:76501967-76501986 | MS.gene059632:intron | 55.0% | |
| !! | CTGAGGATGGTGGGATAGGA+AGG | - | chr6.1:76504595-76504614 | MS.gene059632:intron | 55.0% |
| GCATCAAGCTTGCGCAAGGC+CGG | + | chr6.1:76503041-76503060 | None:intergenic | 60.0% | |
| GCGGAGAATCCTTGACTGCG+TGG | - | chr6.1:76502780-76502799 | MS.gene059632:CDS | 60.0% | |
| CATCGTTGGCGGCATCCAGC+CGG | - | chr6.1:76504523-76504542 | MS.gene059632:intron | 65.0% | |
| CGGCTGGATGCCGCCAACGA+TGG | + | chr6.1:76504525-76504544 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.1 | gene | 76501214 | 76504833 | 76501214 | ID=MS.gene059632 |
| chr6.1 | mRNA | 76501214 | 76504833 | 76501214 | ID=MS.gene059632.t1;Parent=MS.gene059632 |
| chr6.1 | exon | 76504614 | 76504833 | 76504614 | ID=MS.gene059632.t1.exon1;Parent=MS.gene059632.t1 |
| chr6.1 | CDS | 76504614 | 76504833 | 76504614 | ID=cds.MS.gene059632.t1;Parent=MS.gene059632.t1 |
| chr6.1 | exon | 76504005 | 76504121 | 76504005 | ID=MS.gene059632.t1.exon2;Parent=MS.gene059632.t1 |
| chr6.1 | CDS | 76504005 | 76504121 | 76504005 | ID=cds.MS.gene059632.t1;Parent=MS.gene059632.t1 |
| chr6.1 | exon | 76503491 | 76503645 | 76503491 | ID=MS.gene059632.t1.exon3;Parent=MS.gene059632.t1 |
| chr6.1 | CDS | 76503491 | 76503645 | 76503491 | ID=cds.MS.gene059632.t1;Parent=MS.gene059632.t1 |
| chr6.1 | exon | 76502977 | 76503051 | 76502977 | ID=MS.gene059632.t1.exon4;Parent=MS.gene059632.t1 |
| chr6.1 | CDS | 76502977 | 76503051 | 76502977 | ID=cds.MS.gene059632.t1;Parent=MS.gene059632.t1 |
| chr6.1 | exon | 76502525 | 76502800 | 76502525 | ID=MS.gene059632.t1.exon5;Parent=MS.gene059632.t1 |
| chr6.1 | CDS | 76502525 | 76502800 | 76502525 | ID=cds.MS.gene059632.t1;Parent=MS.gene059632.t1 |
| chr6.1 | exon | 76502026 | 76502343 | 76502026 | ID=MS.gene059632.t1.exon6;Parent=MS.gene059632.t1 |
| chr6.1 | CDS | 76502026 | 76502343 | 76502026 | ID=cds.MS.gene059632.t1;Parent=MS.gene059632.t1 |
| chr6.1 | exon | 76501214 | 76501636 | 76501214 | ID=MS.gene059632.t1.exon7;Parent=MS.gene059632.t1 |
| chr6.1 | CDS | 76501214 | 76501636 | 76501214 | ID=cds.MS.gene059632.t1;Parent=MS.gene059632.t1 |
| Gene Sequence |
| Protein sequence |
