AlfalfaGEDB | MS.gene76556

M. sativa cultivar XinJiangDaYe / MS.gene76556

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene76556.t1	XP_003597655.2	86.1	546	73	2	1	545	1	544	4.90E-239	837

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene76556.t1	Q9LI74	37.1	353	190	9	97	427	85	427	1.6e-41	172.2

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene76556.t1	G7IHX7	86.1	546	73	2	1	545	1	544	3.5e-239	837.0

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene05686	MS.gene76556	0.802617	5.15E-49	-1.69E-46
MS.gene058781	MS.gene76556	0.813026	3.15E-51	-1.69E-46
MS.gene058783	MS.gene76556	0.823502	1.34E-53	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene76556.t1	MTR_2g100630	91.026	546	46	2	1	545	1	544	0.0	1010
MS.gene76556.t1	MTR_2g100630	91.434	502	40	2	45	545	4	503	0.0	929
MS.gene76556.t1	MTR_8g014900	50.419	597	221	14	5	545	15	592	1.57e-161	473
MS.gene76556.t1	MTR_5g053270	34.402	468	269	13	13	457	1	453	3.01e-56	204
MS.gene76556.t1	MTR_1g093850	33.920	398	219	9	95	458	87	474	6.76e-51	188
MS.gene76556.t1	MTR_1g061840	20.479	376	226	8	10	362	11	336	9.88e-15	76.6
MS.gene76556.t1	MTR_1g016290	34.104	173	88	6	211	360	131	300	2.01e-12	70.5

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene76556.t1	AT1G52080	42.683	492	250	11	1	472	1	480	4.47e-101	317
MS.gene76556.t1	AT1G52080	42.683	492	250	11	1	472	1	480	4.47e-101	317
MS.gene76556.t1	AT3G25690	37.895	380	209	10	97	457	85	456	3.06e-58	209
MS.gene76556.t1	AT3G25690	37.895	380	209	10	97	457	85	456	3.06e-58	209
MS.gene76556.t1	AT3G25690	37.895	380	209	10	97	457	85	456	3.06e-58	209
MS.gene76556.t1	AT3G25690	37.895	380	209	10	97	457	85	456	3.06e-58	209
MS.gene76556.t1	AT3G25690	37.895	380	209	10	97	457	87	458	3.93e-58	209
MS.gene76556.t1	AT3G25690	37.722	281	148	7	191	457	48	315	9.86e-39	152

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Find 81 sgRNAs with CRISPR-Local

Find 129 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTTACAGACTGAGAAT+CGG	0.518342	2.3:+3117161	MS.gene76556:CDS
AAACATGCACCCGCGGATCG+AGG	0.623688	2.3:+3116786	MS.gene76556:CDS
AAACCAAAGTTCACTAAAAT+TGG	0.198104	2.3:-3116109	None:intergenic
AACAGGAGATAATTCAACTT+AGG	0.560012	2.3:+3116984	MS.gene76556:CDS
AACGACTCAATAATGAAATT+AGG	0.417238	2.3:+3117254	MS.gene76556:CDS
AAGAAGATAGCAATTCTACA+TGG	0.649518	2.3:+3117998	MS.gene76556:CDS
AAGAATTAGTTTACATGCGT+TGG	0.421265	2.3:+3117599	MS.gene76556:CDS
AAGCAGAACCTTTGTATTCT+TGG	0.194952	2.3:-3117342	None:intergenic
AAGCTTAGGAGAATGATACA+AGG	0.653632	2.3:+3117916	MS.gene76556:CDS
AATACATCAACCGGAGTTGA+TGG	0.452802	2.3:+3118024	MS.gene76556:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAACTTACAGACTGAGAAT+CGG	+	chr2.3:3117161-3117180	MS.gene76556:CDS	30.0%
AAATGATTCATGTGTTTCTC+AGG	+	chr2.3:3116271-3116290	MS.gene76556:intron	30.0%
AACAGGAGATAATTCAACTT+AGG	+	chr2.3:3116984-3117003	MS.gene76556:CDS	30.0%
AAGAAGATAGCAATTCTACA+TGG	+	chr2.3:3117998-3118017	MS.gene76556:CDS	30.0%
ACACAATAAAACAGTTGCAA+AGG	+	chr2.3:3117666-3117685	MS.gene76556:CDS	30.0%
ATGGTAGAACTTCATTTGAT+AGG	+	chr2.3:3118043-3118062	MS.gene76556:CDS	30.0%
CATGTTTCTTCCTGTTATAT+AGG	-	chr2.3:3116773-3116792	None:intergenic	30.0%
CTTGAATATGCTGATACTAA+TGG	+	chr2.3:3117742-3117761	MS.gene76556:CDS	30.0%
GATAATTCAACTTAGGAACA+TGG	+	chr2.3:3116991-3117010	MS.gene76556:CDS	30.0%
TATAGAACCAGTCTCAAATT+TGG	+	chr2.3:3116494-3116513	MS.gene76556:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2.3	gene	3116076	3118212	3116076	ID=MS.gene76556
chr2.3	mRNA	3116076	3118212	3116076	ID=MS.gene76556.t1;Parent=MS.gene76556
chr2.3	exon	3116076	3116211	3116076	ID=MS.gene76556.t1.exon1;Parent=MS.gene76556.t1
chr2.3	CDS	3116076	3116211	3116076	ID=cds.MS.gene76556.t1;Parent=MS.gene76556.t1
chr2.3	exon	3116293	3116363	3116293	ID=MS.gene76556.t1.exon2;Parent=MS.gene76556.t1
chr2.3	CDS	3116293	3116363	3116293	ID=cds.MS.gene76556.t1;Parent=MS.gene76556.t1
chr2.3	exon	3116782	3118212	3116782	ID=MS.gene76556.t1.exon3;Parent=MS.gene76556.t1
chr2.3	CDS	3116782	3118212	3116782	ID=cds.MS.gene76556.t1;Parent=MS.gene76556.t1

Gene Sequence

>MS.gene76556

ATGATGAAGAAGAAGGAAGAGAAGGGTATGAAGCCAATTTTAGTGAACTTTGGTTTGGCTTTGGCTCTTTCTTTTGCTGGATTTCTCTACTCGCGCCTCCGAATCACAAGAATCATTCCCACGGGTCGTTCTTCGGGTATTGTTTCCTTTCAATTTCATGATGAATTCAAATAATCATGTGAGTAGTTTTTTATTAAATGATTCATGTGTTTCTCAGGTCATGAAAGTGAAGTTAATTTAGGAGAAGATATTGGAGCAACATTCAGTACTTTCAACACTGTTTCAGAGGTAGTTTTTCTCTTCATTTTATAGTATTAACTGTTTGGTTTGTATTTCAAAATTGAACTGGCTTGTTTGATACAACAACTGGATTTGTTATCGGTGAATTGGTTTTGGACTGGTTTTGAGCTAGTGTATGTATAGAACCAGTCTCAAATTTGGTTTCGGTTTAAGTCAATTTATGAACCTTCCATTCAAAACTTGCTTTGATTTTGGCGTGGTTTGGTTAAACTGGTTTATAGTCTTTCTTGTAATGCTCATTACCCATATAGATTTGCTATTTCAAAATAAGATAAATAATGTAAGGAGTTGAGGTAACTTTCATGGATAGCCAACTGAATTCCACCATTCAGACCTTCTCCTATTTAGATGCACTTTTTTCAAACAATGAAACTAAAATAGGACTATTGAATTTCCTATATAACAGGAAGAAACATGCACCCGCGGATCGAGGAATGAAAATTCTCTGATTGCTCCTTTCAGTTGCAGTGAACAAAAGGGAGATAAAGATGAGTTTCTTCTACCTGAATTTGATGAGCTCGTTAAGGAGGTAGAGTTCGAAGTAGAGGCACAGAGGTTAAAAGTAGGGTCTTCTAGAGAATATGCAGTTCCTGATAAGAATGACTATGAACAGGAGATAATTCAACTTAGGAACATGGTTAGATTGCTTCAAGACAAGGAACAGAATCTCGAGGTTCAGTTGCTTGAGTACTGTGGTCTTAGAGAGCAAGAAACAGTTGTAATGGAGCTCCAAAATAGATTGAAGATAAGTAATATGGAGGTGAAGATGTTCAATCTGAAGGCTAAAAACTTACAGACTGAGAATCGGAGATTAAAAGAACAGGCTGCCGATCATGCAAAGGTGCTGGCTGAGCTTGCCGCAGCAAAAGCAAAAATTGAACGACTCAATAATGAAATTAGGCGTGAAGCCGAACAAAATAAGGAAAAGATAGTTTCTCTTCAACAAAGAGTAGCCAAGTTGCAAGACCAAGAATACAAAGGTTCTGCTTGCGATCAAGATATTAAAATAAAGCTGCAAAAGCTAAATGCTGAGTCTGAAGTAGAAGAGTTGAGGAAATCTAATTTAAAATTGCAGACACAGAATTATGACTTAGCTCGAAGATTGGACTCTACACAGATCATTGCTAATGATGTGAACCGAGAAAGTGAGTGTCTTAGAAAAGAAAACGAGGACTTGATGAAGCAAATTGAGCAACTACATTCTGATCGATGTTCGGATCTTGAAGAATTAGTTTACATGCGTTGGATAAATGCTTGTTTACGATATGAGTTGCGGAATTATCAGCCGCCACACAATAAAACAGTTGCAAAGGATTTGAGTAAAAGCTTAAGCCCCTCTTCTGAGAAGAAAGCCAAACAGCTTATACTTGAATATGCTGATACTAATGGAGCAGGGAGTATTGTAAATTTTGATTTTGATCAACGGTCATCCTCACAAGCTTCTTCTATTACTGACTCTGGAGAATATGATGATTTTTCTTCTGTTGATAATTCATCTGCTGCCAGAACTAATACCACAAGCCAGAACAAATTTTTCAGCAAGCTTAGGAGAATGATACAAGGAAAGGATAGCCATCGTCATCATCATCGTCGTCATCATAGTCAGGTTTCATCTAGATATCAAGAAGATAGCAATTCTACATGGCCAAATACATCAACCGGAGTTGATGGTAGAACTTCATTTGATAGGAGATATTCAAGTTTAAGTGGAGAAGGTTCCTTCTCTGGTTTTTTAGGCATAGAGAAATCCGATTTGGAGAAATATGCAGAAGCTCTAAAAGATTCTAGTGTGAATGCTAGATATAAAAAACGCGGAAGATCAGTATCATATAGTTAG

Protein sequence

>MS.gene76556.t1

MMKKKEEKGMKPILVNFGLALALSFAGFLYSRLRITRIIPTGRSSGHESEVNLGEDIGATFSTFNTVSEEETCTRGSRNENSLIAPFSCSEQKGDKDEFLLPEFDELVKEVEFEVEAQRLKVGSSREYAVPDKNDYEQEIIQLRNMVRLLQDKEQNLEVQLLEYCGLREQETVVMELQNRLKISNMEVKMFNLKAKNLQTENRRLKEQAADHAKVLAELAAAKAKIERLNNEIRREAEQNKEKIVSLQQRVAKLQDQEYKGSACDQDIKIKLQKLNAESEVEELRKSNLKLQTQNYDLARRLDSTQIIANDVNRESECLRKENEDLMKQIEQLHSDRCSDLEELVYMRWINACLRYELRNYQPPHNKTVAKDLSKSLSPSSEKKAKQLILEYADTNGAGSIVNFDFDQRSSSQASSITDSGEYDDFSSVDNSSAARTNTTSQNKFFSKLRRMIQGKDSHRHHHRRHHSQVSSRYQEDSNSTWPNTSTGVDGRTSFDRRYSSLSGEGSFSGFLGIEKSDLEKYAEALKDSSVNARYKKRGRSVSYS