AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene76556

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene76556.t1 MTR_2g100630 91.026 546 46 2 1 545 1 544 0.0 1010
MS.gene76556.t1 MTR_2g100630 91.434 502 40 2 45 545 4 503 0.0 929
MS.gene76556.t1 MTR_8g014900 50.419 597 221 14 5 545 15 592 1.57e-161 473
MS.gene76556.t1 MTR_5g053270 34.402 468 269 13 13 457 1 453 3.01e-56 204
MS.gene76556.t1 MTR_1g093850 33.920 398 219 9 95 458 87 474 6.76e-51 188
MS.gene76556.t1 MTR_1g061840 20.479 376 226 8 10 362 11 336 9.88e-15 76.6
MS.gene76556.t1 MTR_1g016290 34.104 173 88 6 211 360 131 300 2.01e-12 70.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene76556.t1 AT1G52080 42.683 492 250 11 1 472 1 480 4.47e-101 317
MS.gene76556.t1 AT1G52080 42.683 492 250 11 1 472 1 480 4.47e-101 317
MS.gene76556.t1 AT3G25690 37.895 380 209 10 97 457 85 456 3.06e-58 209
MS.gene76556.t1 AT3G25690 37.895 380 209 10 97 457 85 456 3.06e-58 209
MS.gene76556.t1 AT3G25690 37.895 380 209 10 97 457 85 456 3.06e-58 209
MS.gene76556.t1 AT3G25690 37.895 380 209 10 97 457 85 456 3.06e-58 209
MS.gene76556.t1 AT3G25690 37.895 380 209 10 97 457 87 458 3.93e-58 209
MS.gene76556.t1 AT3G25690 37.722 281 148 7 191 457 48 315 9.86e-39 152

Find 81 sgRNAs with CRISPR-Local

Find 129 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACTTATCTTCAATCTATTT+TGG 0.113134 2.3:-3117105 None:intergenic
TCAACTCCGGTTGATGTATT+TGG 0.193803 2.3:-3118021 None:intergenic
AAGCAGAACCTTTGTATTCT+TGG 0.194952 2.3:-3117342 None:intergenic
AAACCAAAGTTCACTAAAAT+TGG 0.198104 2.3:-3116109 None:intergenic
CATTCCCACGGGTCGTTCTT+CGG 0.232519 2.3:+3116189 MS.gene76556:CDS
CATGAAAGTGAAGTTAATTT+AGG 0.245225 2.3:+3116295 MS.gene76556:CDS
CTGGCTTGTGGTATTAGTTC+TGG 0.298503 2.3:-3117878 None:intergenic
GTTAATTTAGGAGAAGATAT+TGG 0.305923 2.3:+3116307 MS.gene76556:CDS
TGTTCATAGTCATTCTTATC+AGG 0.308397 2.3:-3116965 None:intergenic
TAGATTGAAGATAAGTAATA+TGG 0.320175 2.3:+3117111 MS.gene76556:CDS
TTCTAAGACACTCACTTTCT+CGG 0.328184 2.3:-3117513 None:intergenic
AGTGAACTTTGGTTTGGCTT+TGG 0.341141 2.3:+3116117 MS.gene76556:CDS
GCGTGAAGCCGAACAAAATA+AGG 0.350475 2.3:+3117276 MS.gene76556:CDS
AGTGGAGAAGGTTCCTTCTC+TGG 0.354021 2.3:+3118081 MS.gene76556:CDS
ATTCCCACGGGTCGTTCTTC+GGG 0.359679 2.3:+3116190 MS.gene76556:CDS
TTAACGAGCTCATCAAATTC+AGG 0.370254 2.3:-3116878 None:intergenic
CTTGAATATGCTGATACTAA+TGG 0.370950 2.3:+3117742 MS.gene76556:CDS
AGGCATAGAGAAATCCGATT+TGG 0.378976 2.3:+3118110 MS.gene76556:CDS
TTCTGCATATTTCTCCAAAT+CGG 0.389568 2.3:-3118124 None:intergenic
ATATTCAAGTATAAGCTGTT+TGG 0.395368 2.3:-3117728 None:intergenic
TGGGAATGATTCTTGTGATT+CGG 0.409971 2.3:-3116174 None:intergenic
AGGAGATATTCAAGTTTAAG+TGG 0.414108 2.3:+3118063 MS.gene76556:CDS
TTTCAGTTGCAGTGAACAAA+AGG 0.416217 2.3:+3116832 MS.gene76556:CDS
AACGACTCAATAATGAAATT+AGG 0.417238 2.3:+3117254 MS.gene76556:CDS
AAGAATTAGTTTACATGCGT+TGG 0.421265 2.3:+3117599 MS.gene76556:CDS
AGCCAGCACCTTTGCATGAT+CGG 0.425770 2.3:-3117203 None:intergenic
TTATGACTTAGCTCGAAGAT+TGG 0.431098 2.3:+3117459 MS.gene76556:CDS
TTGGCTTTCTTCTCAGAAGA+GGG 0.441695 2.3:-3117709 None:intergenic
ATGGTAGAACTTCATTTGAT+AGG 0.445522 2.3:+3118043 MS.gene76556:CDS
AATACATCAACCGGAGTTGA+TGG 0.452802 2.3:+3118024 MS.gene76556:CDS
AGAGCAAGAAACAGTTGTAA+TGG 0.455006 2.3:+3117078 MS.gene76556:CDS
TGCCGATCATGCAAAGGTGC+TGG 0.458779 2.3:+3117201 MS.gene76556:CDS
TGAATTTGATGAGCTCGTTA+AGG 0.465180 2.3:+3116880 MS.gene76556:CDS
ACATGGCCAAATACATCAAC+CGG 0.465931 2.3:+3118015 MS.gene76556:CDS
TGATAAGAATGACTATGAAC+AGG 0.473154 2.3:+3116967 MS.gene76556:CDS
GTATTCTTGGTCTTGCAACT+TGG 0.480068 2.3:-3117329 None:intergenic
TATGCTGATACTAATGGAGC+AGG 0.481779 2.3:+3117748 MS.gene76556:CDS
GAATCGGAGATTAAAAGAAC+AGG 0.482838 2.3:+3117177 MS.gene76556:CDS
GATGAAGAAGAAGGAAGAGA+AGG 0.483234 2.3:+3116078 MS.gene76556:CDS
TCATCGTCGTCATCATAGTC+AGG 0.507803 2.3:+3117960 MS.gene76556:CDS
ACTACATTCTGATCGATGTT+CGG 0.509192 2.3:+3117570 MS.gene76556:CDS
TTTGGCTTTCTTCTCAGAAG+AGG 0.515916 2.3:-3117710 None:intergenic
AAAACTTACAGACTGAGAAT+CGG 0.518342 2.3:+3117161 MS.gene76556:CDS
GCTTCTTCTATTACTGACTC+TGG 0.521368 2.3:+3117814 MS.gene76556:CDS
TATTCAAGTTTAAGTGGAGA+AGG 0.524814 2.3:+3118069 MS.gene76556:CDS
ATGAAGAAGAAGGAAGAGAA+GGG 0.525563 2.3:+3116079 MS.gene76556:CDS
GAGGCACAGAGGTTAAAAGT+AGG 0.527073 2.3:+3116920 MS.gene76556:CDS
TACTTTCAACACTGTTTCAG+AGG 0.544635 2.3:+3116342 MS.gene76556:CDS
TTCAGTTGCAGTGAACAAAA+GGG 0.551359 2.3:+3116833 MS.gene76556:CDS
AACAGGAGATAATTCAACTT+AGG 0.560012 2.3:+3116984 MS.gene76556:CDS
TGGCTTTCTTCTCAGAAGAG+GGG 0.564881 2.3:-3117708 None:intergenic
GGAGGTAGAGTTCGAAGTAG+AGG 0.566564 2.3:+3116901 MS.gene76556:CDS
AGGCACAGAGGTTAAAAGTA+GGG 0.568123 2.3:+3116921 MS.gene76556:CDS
AGTCTGAAGTAGAAGAGTTG+AGG 0.571431 2.3:+3117407 MS.gene76556:CDS
GGTTAGATTGCTTCAAGACA+AGG 0.573945 2.3:+3117012 MS.gene76556:CDS
GGTGAAGATGTTCAATCTGA+AGG 0.577155 2.3:+3117135 MS.gene76556:CDS
AGTAATAGAAGAAGCTTGTG+AGG 0.586514 2.3:-3117806 None:intergenic
ATTGAAGATAAGTAATATGG+AGG 0.603014 2.3:+3117114 MS.gene76556:CDS
ACACAATAAAACAGTTGCAA+AGG 0.605474 2.3:+3117666 MS.gene76556:CDS
CTTGTTTACGATATGAGTTG+CGG 0.607406 2.3:+3117629 MS.gene76556:CDS
TAGGAGAATGATACAAGGAA+AGG 0.611027 2.3:+3117921 MS.gene76556:CDS
GAATGATTCTTGTGATTCGG+AGG 0.612375 2.3:-3116171 None:intergenic
TGAAGTTCTACCATCAACTC+CGG 0.614419 2.3:-3118034 None:intergenic
ATCACAAGAATCATTCCCAC+GGG 0.618964 2.3:+3116178 MS.gene76556:CDS
AAACATGCACCCGCGGATCG+AGG 0.623688 2.3:+3116786 MS.gene76556:CDS
GATAATTCAACTTAGGAACA+TGG 0.624258 2.3:+3116991 MS.gene76556:CDS
ATTTGATGAGCTCGTTAAGG+AGG 0.625163 2.3:+3116883 MS.gene76556:CDS
ACAGGCTGCCGATCATGCAA+AGG 0.626568 2.3:+3117195 MS.gene76556:CDS
GTTCAGTTGCTTGAGTACTG+TGG 0.633821 2.3:+3117049 MS.gene76556:CDS
AATCACAAGAATCATTCCCA+CGG 0.638408 2.3:+3116177 MS.gene76556:CDS
CAGGAAGAAACATGCACCCG+CGG 0.640821 2.3:+3116779 MS.gene76556:intron
AAGAAGATAGCAATTCTACA+TGG 0.649518 2.3:+3117998 MS.gene76556:CDS
AAGCTTAGGAGAATGATACA+AGG 0.653632 2.3:+3117916 MS.gene76556:CDS
ATACCCGAAGAACGACCCGT+GGG 0.659867 2.3:-3116193 None:intergenic
ATGCTGATACTAATGGAGCA+GGG 0.665373 2.3:+3117749 MS.gene76556:CDS
TTGCAAGACCAAGAATACAA+AGG 0.679454 2.3:+3117334 MS.gene76556:CDS
AATACCCGAAGAACGACCCG+TGG 0.683258 2.3:-3116194 None:intergenic
AGTTCGAAGTAGAGGCACAG+AGG 0.686642 2.3:+3116909 MS.gene76556:CDS
AGACAAGGAACAGAATCTCG+AGG 0.707465 2.3:+3117027 MS.gene76556:CDS
GTGTCTTAGAAAAGAAAACG+AGG 0.744245 2.3:+3117525 MS.gene76556:CDS
GACGACGATGATGATGACGA+TGG 0.780952 2.3:-3117948 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATAAGATAAATAATGTA+AGG + chr2.3:3116639-3116658 MS.gene76556:intron 10.0%
!!! ATTTTATAGTATTAACTGTT+TGG + chr2.3:3116379-3116398 MS.gene76556:intron 15.0%
!!! TAAATTTTGATTTTGATCAA+CGG + chr2.3:3117779-3117798 MS.gene76556:CDS 15.0%
!! TAGATTGAAGATAAGTAATA+TGG + chr2.3:3117111-3117130 MS.gene76556:CDS 20.0%
!! TATTGAATTTCCTATATAAC+AGG + chr2.3:3116760-3116779 MS.gene76556:intron 20.0%
!! TCAAACAATGAAACTAAAAT+AGG + chr2.3:3116735-3116754 MS.gene76556:intron 20.0%
!! TTGAAATAGCAAATCTATAT+GGG - chr2.3:3116621-3116640 None:intergenic 20.0%
!! TTTGTATTTCAAAATTGAAC+TGG + chr2.3:3116402-3116421 MS.gene76556:intron 20.0%
!!! TACTTATCTTCAATCTATTT+TGG - chr2.3:3117108-3117127 None:intergenic 20.0%
!!! TATCTTTTCCTTATTTTGTT+CGG - chr2.3:3117287-3117306 None:intergenic 20.0%
!!! TTTGAAATAGCAAATCTATA+TGG - chr2.3:3116622-3116641 None:intergenic 20.0%
! AAACCAAAGTTCACTAAAAT+TGG - chr2.3:3116112-3116131 None:intergenic 25.0%
! AACGACTCAATAATGAAATT+AGG + chr2.3:3117254-3117273 MS.gene76556:CDS 25.0%
! AATGCTAGATATAAAAAACG+CGG + chr2.3:3118168-3118187 MS.gene76556:CDS 25.0%
! ATAAATAATGTAAGGAGTTG+AGG + chr2.3:3116647-3116666 MS.gene76556:intron 25.0%
! ATATTCAAGTATAAGCTGTT+TGG - chr2.3:3117731-3117750 None:intergenic 25.0%
! ATTGAAGATAAGTAATATGG+AGG + chr2.3:3117114-3117133 MS.gene76556:CDS 25.0%
! CATGAAAGTGAAGTTAATTT+AGG + chr2.3:3116295-3116314 MS.gene76556:CDS 25.0%
! GAATTCATCATGAAATTGAA+AGG - chr2.3:3116224-3116243 None:intergenic 25.0%
! GTTAATTTAGGAGAAGATAT+TGG + chr2.3:3116307-3116326 MS.gene76556:CDS 25.0%
!! TGAAAAAAGTGCATCTAAAT+AGG - chr2.3:3116718-3116737 None:intergenic 25.0%
!!! AAATCAAAGCAAGTTTTGAA+TGG - chr2.3:3116548-3116567 None:intergenic 25.0%
!!! AATTTTAGTGAACTTTGGTT+TGG + chr2.3:3116111-3116130 MS.gene76556:CDS 25.0%
!!! TTCAAAACTTGCTTTGATTT+TGG + chr2.3:3116548-3116567 MS.gene76556:intron 25.0%
AAAACTTACAGACTGAGAAT+CGG + chr2.3:3117161-3117180 MS.gene76556:CDS 30.0%
AAATGATTCATGTGTTTCTC+AGG + chr2.3:3116271-3116290 MS.gene76556:intron 30.0%
AACAGGAGATAATTCAACTT+AGG + chr2.3:3116984-3117003 MS.gene76556:CDS 30.0%
AAGAAGATAGCAATTCTACA+TGG + chr2.3:3117998-3118017 MS.gene76556:CDS 30.0%
ACACAATAAAACAGTTGCAA+AGG + chr2.3:3117666-3117685 MS.gene76556:CDS 30.0%
ATGGTAGAACTTCATTTGAT+AGG + chr2.3:3118043-3118062 MS.gene76556:CDS 30.0%
CATGTTTCTTCCTGTTATAT+AGG - chr2.3:3116773-3116792 None:intergenic 30.0%
CTTGAATATGCTGATACTAA+TGG + chr2.3:3117742-3117761 MS.gene76556:CDS 30.0%
GATAATTCAACTTAGGAACA+TGG + chr2.3:3116991-3117010 MS.gene76556:CDS 30.0%
TATAGAACCAGTCTCAAATT+TGG + chr2.3:3116494-3116513 MS.gene76556:intron 30.0%
TGATAAGAATGACTATGAAC+AGG + chr2.3:3116967-3116986 MS.gene76556:CDS 30.0%
TGTTCATAGTCATTCTTATC+AGG - chr2.3:3116968-3116987 None:intergenic 30.0%
TTCTGCATATTTCTCCAAAT+CGG - chr2.3:3118127-3118146 None:intergenic 30.0%
! AAGAATTAGTTTACATGCGT+TGG + chr2.3:3117599-3117618 MS.gene76556:CDS 30.0%
! AGGAGATATTCAAGTTTAAG+TGG + chr2.3:3118063-3118082 MS.gene76556:CDS 30.0%
! TATTCAAGTTTAAGTGGAGA+AGG + chr2.3:3118069-3118088 MS.gene76556:CDS 30.0%
!! AAGCCAATTTTAGTGAACTT+TGG + chr2.3:3116106-3116125 MS.gene76556:CDS 30.0%
!! ACAAATTTTTCAGCAAGCTT+AGG + chr2.3:3117902-3117921 MS.gene76556:CDS 30.0%
!! ACAACAACTGGATTTGTTAT+CGG + chr2.3:3116435-3116454 MS.gene76556:intron 30.0%
!! TTCAATTTTTGCTTTTGCTG+CGG - chr2.3:3117236-3117255 None:intergenic 30.0%
!! TTTGCAACTGTTTTATTGTG+TGG - chr2.3:3117667-3117686 None:intergenic 30.0%
AAGCAGAACCTTTGTATTCT+TGG - chr2.3:3117345-3117364 None:intergenic 35.0%
AAGCTTAGGAGAATGATACA+AGG + chr2.3:3117916-3117935 MS.gene76556:CDS 35.0%
AAGTGCATCTAAATAGGAGA+AGG - chr2.3:3116712-3116731 None:intergenic 35.0%
AATCACAAGAATCATTCCCA+CGG + chr2.3:3116177-3116196 MS.gene76556:CDS 35.0%
ACTACATTCTGATCGATGTT+CGG + chr2.3:3117570-3117589 MS.gene76556:CDS 35.0%
AGAGCAAGAAACAGTTGTAA+TGG + chr2.3:3117078-3117097 MS.gene76556:CDS 35.0%
AGTAATAGAAGAAGCTTGTG+AGG - chr2.3:3117809-3117828 None:intergenic 35.0%
ATGAAGAAGAAGGAAGAGAA+GGG + chr2.3:3116079-3116098 MS.gene76556:CDS 35.0%
CTTGTTTACGATATGAGTTG+CGG + chr2.3:3117629-3117648 MS.gene76556:CDS 35.0%
GAATCGGAGATTAAAAGAAC+AGG + chr2.3:3117177-3117196 MS.gene76556:CDS 35.0%
GTGTCTTAGAAAAGAAAACG+AGG + chr2.3:3117525-3117544 MS.gene76556:CDS 35.0%
TAAATAGGAGAAGGTCTGAA+TGG - chr2.3:3116703-3116722 None:intergenic 35.0%
TACTTTCAACACTGTTTCAG+AGG + chr2.3:3116342-3116361 MS.gene76556:CDS 35.0%
TAGGAGAATGATACAAGGAA+AGG + chr2.3:3117921-3117940 MS.gene76556:CDS 35.0%
TATGCCTAAAAAACCAGAGA+AGG - chr2.3:3118097-3118116 None:intergenic 35.0%
TGAATTTGATGAGCTCGTTA+AGG + chr2.3:3116880-3116899 MS.gene76556:CDS 35.0%
TGGGAATGATTCTTGTGATT+CGG - chr2.3:3116177-3116196 None:intergenic 35.0%
TTAACGAGCTCATCAAATTC+AGG - chr2.3:3116881-3116900 None:intergenic 35.0%
TTATGACTTAGCTCGAAGAT+TGG + chr2.3:3117459-3117478 MS.gene76556:CDS 35.0%
TTCAGTTGCAGTGAACAAAA+GGG + chr2.3:3116833-3116852 MS.gene76556:CDS 35.0%
TTGCAAGACCAAGAATACAA+AGG + chr2.3:3117334-3117353 MS.gene76556:CDS 35.0%
TTTCAGTTGCAGTGAACAAA+AGG + chr2.3:3116832-3116851 MS.gene76556:CDS 35.0%
! ACCAGTCTCAAATTTGGTTT+CGG + chr2.3:3116500-3116519 MS.gene76556:intron 35.0%
! GCTTGCTGAAAAATTTGTTC+TGG - chr2.3:3117900-3117919 None:intergenic 35.0%
! TTTTGTTCACTGCAACTGAA+AGG - chr2.3:3116833-3116852 None:intergenic 35.0%
!! GAAAAATTTGTTCTGGCTTG+TGG - chr2.3:3117893-3117912 None:intergenic 35.0%
!! TGGATTTGTTATCGGTGAAT+TGG + chr2.3:3116443-3116462 MS.gene76556:intron 35.0%
!! TGTTATCGGTGAATTGGTTT+TGG + chr2.3:3116449-3116468 MS.gene76556:intron 35.0%
!! TTCTAAGACACTCACTTTCT+CGG - chr2.3:3117516-3117535 None:intergenic 35.0%
!!! CAAAGCAAGTTTTGAATGGA+AGG - chr2.3:3116544-3116563 None:intergenic 35.0%
AATACATCAACCGGAGTTGA+TGG + chr2.3:3118024-3118043 MS.gene76556:CDS 40.0%
ACATGGCCAAATACATCAAC+CGG + chr2.3:3118015-3118034 MS.gene76556:CDS 40.0%
AGGAGTTGAGGTAACTTTCA+TGG + chr2.3:3116659-3116678 MS.gene76556:intron 40.0%
AGGCACAGAGGTTAAAAGTA+GGG + chr2.3:3116921-3116940 MS.gene76556:CDS 40.0%
AGGCATAGAGAAATCCGATT+TGG + chr2.3:3118110-3118129 MS.gene76556:CDS 40.0%
ATCACAAGAATCATTCCCAC+GGG + chr2.3:3116178-3116197 MS.gene76556:CDS 40.0%
ATGCTGATACTAATGGAGCA+GGG + chr2.3:3117749-3117768 MS.gene76556:CDS 40.0%
ATTTGATGAGCTCGTTAAGG+AGG + chr2.3:3116883-3116902 MS.gene76556:CDS 40.0%
GATGAAGAAGAAGGAAGAGA+AGG + chr2.3:3116078-3116097 MS.gene76556:CDS 40.0%
GGTGAAGATGTTCAATCTGA+AGG + chr2.3:3117135-3117154 MS.gene76556:CDS 40.0%
GGTTAGATTGCTTCAAGACA+AGG + chr2.3:3117012-3117031 MS.gene76556:CDS 40.0%
TATGCTGATACTAATGGAGC+AGG + chr2.3:3117748-3117767 MS.gene76556:CDS 40.0%
TGAAGTTCTACCATCAACTC+CGG - chr2.3:3118037-3118056 None:intergenic 40.0%
! AATTTTCATTCCTCGATCCG+CGG - chr2.3:3116799-3116818 None:intergenic 40.0%
! ACCGAAACCAAATTTGAGAC+TGG - chr2.3:3116504-3116523 None:intergenic 40.0%
! AGTCTGAAGTAGAAGAGTTG+AGG + chr2.3:3117407-3117426 MS.gene76556:CDS 40.0%
! GAATGATTCTTGTGATTCGG+AGG - chr2.3:3116174-3116193 None:intergenic 40.0%
! GGCTTGTTTGATACAACAAC+TGG + chr2.3:3116423-3116442 MS.gene76556:intron 40.0%
! TCAACTCCGGTTGATGTATT+TGG - chr2.3:3118024-3118043 None:intergenic 40.0%
! TCTGAATGGTGGAATTCAGT+TGG - chr2.3:3116689-3116708 None:intergenic 40.0%
! TTGGCTTTCTTCTCAGAAGA+GGG - chr2.3:3117712-3117731 None:intergenic 40.0%
!! AACTTGCTTTGATTTTGGCG+TGG + chr2.3:3116553-3116572 MS.gene76556:intron 40.0%
!! AGTGAACTTTGGTTTGGCTT+TGG + chr2.3:3116117-3116136 MS.gene76556:CDS 40.0%
!! GCAACTGTTTTATTGTGTGG+CGG - chr2.3:3117664-3117683 None:intergenic 40.0%
!! GCTTCTTCTATTACTGACTC+TGG + chr2.3:3117814-3117833 MS.gene76556:CDS 40.0%
!! GTATTCTTGGTCTTGCAACT+TGG - chr2.3:3117332-3117351 None:intergenic 40.0%
!! TTTGGCTTTCTTCTCAGAAG+AGG - chr2.3:3117713-3117732 None:intergenic 40.0%
!!! GGTTCCTTCTCTGGTTTTTT+AGG + chr2.3:3118090-3118109 MS.gene76556:CDS 40.0%
AGACAAGGAACAGAATCTCG+AGG + chr2.3:3117027-3117046 MS.gene76556:CDS 45.0%
ATAGGAGAAGGTCTGAATGG+TGG - chr2.3:3116700-3116719 None:intergenic 45.0%
GAGGCACAGAGGTTAAAAGT+AGG + chr2.3:3116920-3116939 MS.gene76556:CDS 45.0%
GCGTGAAGCCGAACAAAATA+AGG + chr2.3:3117276-3117295 MS.gene76556:CDS 45.0%
TCATCGTCGTCATCATAGTC+AGG + chr2.3:3117960-3117979 MS.gene76556:CDS 45.0%
TGGCTTTCTTCTCAGAAGAG+GGG - chr2.3:3117711-3117730 None:intergenic 45.0%
! ATTTTCATTCCTCGATCCGC+GGG - chr2.3:3116798-3116817 None:intergenic 45.0%
! CTGGCTTGTGGTATTAGTTC+TGG - chr2.3:3117881-3117900 None:intergenic 45.0%
! GTTCAGTTGCTTGAGTACTG+TGG + chr2.3:3117049-3117068 MS.gene76556:CDS 45.0%
!! GCTTTGATTTTGGCGTGGTT+TGG + chr2.3:3116558-3116577 MS.gene76556:intron 45.0%
!! TTGGCGTGGTTTGGTTAAAC+TGG + chr2.3:3116567-3116586 MS.gene76556:intron 45.0%
!!! GCTTTGGCTCTTTCTTTTGC+TGG + chr2.3:3116133-3116152 MS.gene76556:CDS 45.0%
!!! TCGGTGAATTGGTTTTGGAC+TGG + chr2.3:3116454-3116473 MS.gene76556:intron 45.0%
AGCCAGCACCTTTGCATGAT+CGG - chr2.3:3117206-3117225 None:intergenic 50.0%
AGTGGAGAAGGTTCCTTCTC+TGG + chr2.3:3118081-3118100 MS.gene76556:CDS 50.0%
GGAGGTAGAGTTCGAAGTAG+AGG + chr2.3:3116901-3116920 MS.gene76556:CDS 50.0%
! AGTTCGAAGTAGAGGCACAG+AGG + chr2.3:3116909-3116928 MS.gene76556:CDS 50.0%
! GACGACGATGATGATGACGA+TGG - chr2.3:3117951-3117970 None:intergenic 50.0%
AATACCCGAAGAACGACCCG+TGG - chr2.3:3116197-3116216 None:intergenic 55.0%
ACAGGCTGCCGATCATGCAA+AGG + chr2.3:3117195-3117214 MS.gene76556:CDS 55.0%
ATACCCGAAGAACGACCCGT+GGG - chr2.3:3116196-3116215 None:intergenic 55.0%
ATTCCCACGGGTCGTTCTTC+GGG + chr2.3:3116190-3116209 MS.gene76556:CDS 55.0%
CAGGAAGAAACATGCACCCG+CGG + chr2.3:3116779-3116798 MS.gene76556:intron 55.0%
CATTCCCACGGGTCGTTCTT+CGG + chr2.3:3116189-3116208 MS.gene76556:CDS 55.0%
! TGCCGATCATGCAAAGGTGC+TGG + chr2.3:3117201-3117220 MS.gene76556:CDS 55.0%
AAACATGCACCCGCGGATCG+AGG + chr2.3:3116786-3116805 MS.gene76556:CDS 60.0%


Chromosome Type Strat End Strand Name
chr2.3 gene 3116076 3118212 3116076 ID=MS.gene76556
chr2.3 mRNA 3116076 3118212 3116076 ID=MS.gene76556.t1;Parent=MS.gene76556
chr2.3 exon 3116076 3116211 3116076 ID=MS.gene76556.t1.exon1;Parent=MS.gene76556.t1
chr2.3 CDS 3116076 3116211 3116076 ID=cds.MS.gene76556.t1;Parent=MS.gene76556.t1
chr2.3 exon 3116293 3116363 3116293 ID=MS.gene76556.t1.exon2;Parent=MS.gene76556.t1
chr2.3 CDS 3116293 3116363 3116293 ID=cds.MS.gene76556.t1;Parent=MS.gene76556.t1
chr2.3 exon 3116782 3118212 3116782 ID=MS.gene76556.t1.exon3;Parent=MS.gene76556.t1
chr2.3 CDS 3116782 3118212 3116782 ID=cds.MS.gene76556.t1;Parent=MS.gene76556.t1
Gene Sequence

>MS.gene76556

ATGATGAAGAAGAAGGAAGAGAAGGGTATGAAGCCAATTTTAGTGAACTTTGGTTTGGCTTTGGCTCTTTCTTTTGCTGGATTTCTCTACTCGCGCCTCCGAATCACAAGAATCATTCCCACGGGTCGTTCTTCGGGTATTGTTTCCTTTCAATTTCATGATGAATTCAAATAATCATGTGAGTAGTTTTTTATTAAATGATTCATGTGTTTCTCAGGTCATGAAAGTGAAGTTAATTTAGGAGAAGATATTGGAGCAACATTCAGTACTTTCAACACTGTTTCAGAGGTAGTTTTTCTCTTCATTTTATAGTATTAACTGTTTGGTTTGTATTTCAAAATTGAACTGGCTTGTTTGATACAACAACTGGATTTGTTATCGGTGAATTGGTTTTGGACTGGTTTTGAGCTAGTGTATGTATAGAACCAGTCTCAAATTTGGTTTCGGTTTAAGTCAATTTATGAACCTTCCATTCAAAACTTGCTTTGATTTTGGCGTGGTTTGGTTAAACTGGTTTATAGTCTTTCTTGTAATGCTCATTACCCATATAGATTTGCTATTTCAAAATAAGATAAATAATGTAAGGAGTTGAGGTAACTTTCATGGATAGCCAACTGAATTCCACCATTCAGACCTTCTCCTATTTAGATGCACTTTTTTCAAACAATGAAACTAAAATAGGACTATTGAATTTCCTATATAACAGGAAGAAACATGCACCCGCGGATCGAGGAATGAAAATTCTCTGATTGCTCCTTTCAGTTGCAGTGAACAAAAGGGAGATAAAGATGAGTTTCTTCTACCTGAATTTGATGAGCTCGTTAAGGAGGTAGAGTTCGAAGTAGAGGCACAGAGGTTAAAAGTAGGGTCTTCTAGAGAATATGCAGTTCCTGATAAGAATGACTATGAACAGGAGATAATTCAACTTAGGAACATGGTTAGATTGCTTCAAGACAAGGAACAGAATCTCGAGGTTCAGTTGCTTGAGTACTGTGGTCTTAGAGAGCAAGAAACAGTTGTAATGGAGCTCCAAAATAGATTGAAGATAAGTAATATGGAGGTGAAGATGTTCAATCTGAAGGCTAAAAACTTACAGACTGAGAATCGGAGATTAAAAGAACAGGCTGCCGATCATGCAAAGGTGCTGGCTGAGCTTGCCGCAGCAAAAGCAAAAATTGAACGACTCAATAATGAAATTAGGCGTGAAGCCGAACAAAATAAGGAAAAGATAGTTTCTCTTCAACAAAGAGTAGCCAAGTTGCAAGACCAAGAATACAAAGGTTCTGCTTGCGATCAAGATATTAAAATAAAGCTGCAAAAGCTAAATGCTGAGTCTGAAGTAGAAGAGTTGAGGAAATCTAATTTAAAATTGCAGACACAGAATTATGACTTAGCTCGAAGATTGGACTCTACACAGATCATTGCTAATGATGTGAACCGAGAAAGTGAGTGTCTTAGAAAAGAAAACGAGGACTTGATGAAGCAAATTGAGCAACTACATTCTGATCGATGTTCGGATCTTGAAGAATTAGTTTACATGCGTTGGATAAATGCTTGTTTACGATATGAGTTGCGGAATTATCAGCCGCCACACAATAAAACAGTTGCAAAGGATTTGAGTAAAAGCTTAAGCCCCTCTTCTGAGAAGAAAGCCAAACAGCTTATACTTGAATATGCTGATACTAATGGAGCAGGGAGTATTGTAAATTTTGATTTTGATCAACGGTCATCCTCACAAGCTTCTTCTATTACTGACTCTGGAGAATATGATGATTTTTCTTCTGTTGATAATTCATCTGCTGCCAGAACTAATACCACAAGCCAGAACAAATTTTTCAGCAAGCTTAGGAGAATGATACAAGGAAAGGATAGCCATCGTCATCATCATCGTCGTCATCATAGTCAGGTTTCATCTAGATATCAAGAAGATAGCAATTCTACATGGCCAAATACATCAACCGGAGTTGATGGTAGAACTTCATTTGATAGGAGATATTCAAGTTTAAGTGGAGAAGGTTCCTTCTCTGGTTTTTTAGGCATAGAGAAATCCGATTTGGAGAAATATGCAGAAGCTCTAAAAGATTCTAGTGTGAATGCTAGATATAAAAAACGCGGAAGATCAGTATCATATAGTTAG
Protein sequence

>MS.gene76556.t1

MMKKKEEKGMKPILVNFGLALALSFAGFLYSRLRITRIIPTGRSSGHESEVNLGEDIGATFSTFNTVSEEETCTRGSRNENSLIAPFSCSEQKGDKDEFLLPEFDELVKEVEFEVEAQRLKVGSSREYAVPDKNDYEQEIIQLRNMVRLLQDKEQNLEVQLLEYCGLREQETVVMELQNRLKISNMEVKMFNLKAKNLQTENRRLKEQAADHAKVLAELAAAKAKIERLNNEIRREAEQNKEKIVSLQQRVAKLQDQEYKGSACDQDIKIKLQKLNAESEVEELRKSNLKLQTQNYDLARRLDSTQIIANDVNRESECLRKENEDLMKQIEQLHSDRCSDLEELVYMRWINACLRYELRNYQPPHNKTVAKDLSKSLSPSSEKKAKQLILEYADTNGAGSIVNFDFDQRSSSQASSITDSGEYDDFSSVDNSSAARTNTTSQNKFFSKLRRMIQGKDSHRHHHRRHHSQVSSRYQEDSNSTWPNTSTGVDGRTSFDRRYSSLSGEGSFSGFLGIEKSDLEKYAEALKDSSVNARYKKRGRSVSYS