Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76581.t1 | XP_003597631.2 | 100 | 106 | 0 | 0 | 1 | 106 | 1 | 106 | 1.80E-53 | 218.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76581.t1 | Q39247 | 84.9 | 106 | 12 | 2 | 1 | 106 | 1 | 102 | 3.0e-44 | 179.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76581.t1 | G7IUL0 | 100.0 | 106 | 0 | 0 | 1 | 106 | 1 | 106 | 1.3e-53 | 218.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050116 | MS.gene76581 | 0.809505 | 1.83E-50 | -1.69E-46 |
| MS.gene052609 | MS.gene76581 | 0.807297 | 5.41E-50 | -1.69E-46 |
| MS.gene052776 | MS.gene76581 | 0.82212 | 2.81E-53 | -1.69E-46 |
| MS.gene052994 | MS.gene76581 | 0.804292 | 2.32E-49 | -1.69E-46 |
| MS.gene058638 | MS.gene76581 | 0.80979 | 1.59E-50 | -1.69E-46 |
| MS.gene059007 | MS.gene76581 | 0.854135 | 1.51E-61 | -1.69E-46 |
| MS.gene061006 | MS.gene76581 | 0.801655 | 8.13E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76581.t1 | MTR_2g100370 | 100.000 | 106 | 0 | 0 | 1 | 106 | 1 | 106 | 1.19e-71 | 222 |
| MS.gene76581.t1 | MTR_2g100370 | 100.000 | 106 | 0 | 0 | 1 | 106 | 1 | 106 | 1.20e-71 | 222 |
| MS.gene76581.t1 | MTR_8g015880 | 85.849 | 106 | 13 | 2 | 1 | 106 | 1 | 104 | 1.35e-56 | 183 |
| MS.gene76581.t1 | MTR_8g015880 | 83.962 | 106 | 16 | 1 | 1 | 106 | 1 | 105 | 9.77e-56 | 181 |
| MS.gene76581.t1 | MTR_8g015880 | 83.962 | 106 | 16 | 1 | 1 | 106 | 1 | 105 | 9.95e-56 | 181 |
| MS.gene76581.t1 | MTR_1g040810 | 67.925 | 106 | 16 | 2 | 1 | 106 | 1 | 88 | 1.19e-40 | 140 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76581.t1 | AT1G17720 | 84.906 | 106 | 12 | 2 | 1 | 106 | 1 | 102 | 6.80e-56 | 181 |
| MS.gene76581.t1 | AT1G17720 | 84.906 | 106 | 12 | 2 | 1 | 106 | 1 | 102 | 7.58e-56 | 181 |
| MS.gene76581.t1 | AT1G51690 | 77.358 | 106 | 22 | 2 | 1 | 106 | 92 | 195 | 1.37e-52 | 174 |
| MS.gene76581.t1 | AT1G51690 | 77.358 | 106 | 22 | 2 | 1 | 106 | 1 | 104 | 5.26e-52 | 171 |
| MS.gene76581.t1 | AT1G51690 | 77.358 | 106 | 22 | 2 | 1 | 106 | 1 | 104 | 5.35e-52 | 171 |
| MS.gene76581.t1 | AT1G51690 | 77.358 | 106 | 22 | 2 | 1 | 106 | 1 | 104 | 5.35e-52 | 171 |
| MS.gene76581.t1 | AT1G51690 | 73.214 | 112 | 22 | 3 | 1 | 106 | 92 | 201 | 4.16e-50 | 167 |
Find 33 sgRNAs with CRISPR-Local
Find 135 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGAAATTCTCTCAGGTCTT+TGG | 0.277400 | 2.3:-3298017 | MS.gene76581:CDS |
| TACGGCTGGTGAAGAGGTTC+AGG | 0.389099 | 2.3:-3297988 | MS.gene76581:CDS |
| TGCAGCATGGCGAATCTAGA+AGG | 0.395151 | 2.3:-3296667 | MS.gene76581:intron |
| GCTATCGAATTTGACAAGTC+TGG | 0.440306 | 2.3:-3296860 | MS.gene76581:CDS |
| AGCAGCTCCGGCGGGTCCAC+CGG | 0.460562 | 2.3:-3298051 | MS.gene76581:CDS |
| GTTGGAGTGGAAATTCTCTC+AGG | 0.468465 | 2.3:-3298024 | MS.gene76581:CDS |
| AATTTCCACTCCAACGGAAC+CGG | 0.491688 | 2.3:+3298032 | None:intergenic |
| TGATGTTGTTGCAGCAGCTC+CGG | 0.494121 | 2.3:-3298063 | MS.gene76581:CDS |
| GGCGGGTCCACCGGTTCCGT+TGG | 0.495255 | 2.3:-3298042 | MS.gene76581:CDS |
| ATGTTGCATATTCTAGGGCA+TGG | 0.507669 | 2.3:+3296526 | None:intergenic |
| TCTGGTGATCATCTTGCTAC+TGG | 0.508952 | 2.3:-3296842 | MS.gene76581:CDS |
| TAGAAGGGATTCAGAGAGGA+TGG | 0.524551 | 2.3:-3296651 | MS.gene76581:CDS |
| TGTTGTTGCAGCAGCTCCGG+CGG | 0.529862 | 2.3:-3298060 | MS.gene76581:CDS |
| GAATTCAGGATGCCTGCTGA+TGG | 0.530919 | 2.3:+3296622 | None:intergenic |
| AAGAAAATGATGATTACCTC+AGG | 0.533480 | 2.3:+3296569 | None:intergenic |
| GGATGGACTATTCCATCAGC+AGG | 0.533524 | 2.3:-3296634 | MS.gene76581:CDS |
| GTTGTTGCAGCAGCTCCGGC+GGG | 0.539633 | 2.3:-3298059 | MS.gene76581:CDS |
| GTCTTTGGTGAACGTACGGC+TGG | 0.543855 | 2.3:-3298002 | MS.gene76581:CDS |
| GTCCACCGGTTCCGTTGGAG+TGG | 0.545459 | 2.3:-3298037 | MS.gene76581:CDS |
| TCAGGTCTTTGGTGAACGTA+CGG | 0.554308 | 2.3:-3298006 | MS.gene76581:CDS |
| AACGGAACCGGTGGACCCGC+CGG | 0.566125 | 2.3:+3298044 | None:intergenic |
| TTCCACTCCAACGGAACCGG+TGG | 0.577962 | 2.3:+3298035 | None:intergenic |
| TGTTGCATATTCTAGGGCAT+GGG | 0.578235 | 2.3:+3296527 | None:intergenic |
| TGAACGTACGGCTGGTGAAG+AGG | 0.610106 | 2.3:-3297994 | MS.gene76581:CDS |
| GCAGCATGGCGAATCTAGAA+GGG | 0.616694 | 2.3:-3296666 | MS.gene76581:intron |
| GTTTCAGAGTCACGAGCCTG+AGG | 0.618885 | 2.3:-3296585 | MS.gene76581:CDS |
| TGAGAGAATTTCCACTCCAA+CGG | 0.626642 | 2.3:+3298026 | None:intergenic |
| GTCGAGTGGTACTCTTTGAG+AGG | 0.627872 | 2.3:-3296808 | MS.gene76581:CDS |
| TGGTGATCGTGGTGGTCGAG+TGG | 0.655564 | 2.3:-3296822 | MS.gene76581:CDS |
| CATCTTGCTACTGGTGATCG+TGG | 0.655778 | 2.3:-3296833 | MS.gene76581:CDS |
| CTTGCTACTGGTGATCGTGG+TGG | 0.686530 | 2.3:-3296830 | MS.gene76581:CDS |
| GCTGGTGAAGAGGTTCAGGA+AGG | 0.690299 | 2.3:-3297984 | MS.gene76581:intron |
| AATCTAGAAGGGATTCAGAG+AGG | 0.713091 | 2.3:-3296655 | MS.gene76581:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAACAAAAAAACATCACT+CGG | + | chr2.3:3296891-3296910 | None:intergenic | 20.0% |
| !! | AAAACATGGTTTATCAAAAA+GGG | - | chr2.3:3297511-3297530 | MS.gene76581:intron | 20.0% |
| !! | ATCAAAAAGGGAAATAAAAA+TGG | - | chr2.3:3297523-3297542 | MS.gene76581:intron | 20.0% |
| !! | ATGACTATATTGAAAATATC+AGG | + | chr2.3:3297646-3297665 | None:intergenic | 20.0% |
| !! | TAAAACATGGTTTATCAAAA+AGG | - | chr2.3:3297510-3297529 | MS.gene76581:intron | 20.0% |
| !! | TCAATTTGAGTAAGATATAT+TGG | - | chr2.3:3297061-3297080 | MS.gene76581:intron | 20.0% |
| !!! | TAGTGTTTGTTTTTGATTTT+GGG | - | chr2.3:3296804-3296823 | MS.gene76581:CDS | 20.0% |
| !!! | TTTTTGATAAACCATGTTTT+AGG | + | chr2.3:3297511-3297530 | None:intergenic | 20.0% |
| !! | AATGCAAAAGGATAAGATTT+TGG | - | chr2.3:3297174-3297193 | MS.gene76581:intron | 25.0% |
| !!! | GCAAGATTTGTTTTAGTAAA+AGG | - | chr2.3:3297866-3297885 | MS.gene76581:intron | 25.0% |
| !!! | GTAGTGTTTGTTTTTGATTT+TGG | - | chr2.3:3296803-3296822 | MS.gene76581:CDS | 25.0% |
| !!! | GTTTTTTTGTTTTTGCATTG+TGG | - | chr2.3:3296897-3296916 | MS.gene76581:intron | 25.0% |
| !!! | TGTTTTTTTCTTGAGTTTGT+TGG | - | chr2.3:3296695-3296714 | MS.gene76581:intron | 25.0% |
| !!! | TTTGACTTAGTTTGTGTTTT+TGG | - | chr2.3:3296960-3296979 | MS.gene76581:intron | 25.0% |
| AAGAAAATGATGATTACCTC+AGG | + | chr2.3:3298049-3298068 | None:intergenic | 30.0% | |
| AATAGTTCGTACCTAAAACA+TGG | - | chr2.3:3297497-3297516 | MS.gene76581:intron | 30.0% | |
| ATCTTGCCTAAACAAAAATC+AGG | + | chr2.3:3297853-3297872 | None:intergenic | 30.0% | |
| ATTTATTAGGTGCTTTCAAG+GGG | - | chr2.3:3297601-3297620 | MS.gene76581:intron | 30.0% | |
| CATTTATTAGGTGCTTTCAA+GGG | - | chr2.3:3297600-3297619 | MS.gene76581:intron | 30.0% | |
| TATGTCTTTGACAATGCAAA+AGG | - | chr2.3:3297162-3297181 | MS.gene76581:intron | 30.0% | |
| TCAGTTTGTCGTTATAGAAT+GGG | - | chr2.3:3297259-3297278 | MS.gene76581:intron | 30.0% | |
| TGTTTGTACAACGTTGTATT+TGG | - | chr2.3:3296659-3296678 | MS.gene76581:CDS | 30.0% | |
| ! | AGTGTTGAAGTTTGATTGTT+GGG | - | chr2.3:3297127-3297146 | MS.gene76581:intron | 30.0% |
| ! | ATTTTCTGTCAAAACAAACC+AGG | - | chr2.3:3297317-3297336 | MS.gene76581:intron | 30.0% |
| ! | ATTTTCTTGGCAATGTTTCA+CGG | - | chr2.3:3298061-3298080 | MS.gene76581:CDS | 30.0% |
| ! | TAGTGTTGAAGTTTGATTGT+TGG | - | chr2.3:3297126-3297145 | MS.gene76581:intron | 30.0% |
| ! | TGAGGTAATCATCATTTTCT+TGG | - | chr2.3:3298048-3298067 | MS.gene76581:CDS | 30.0% |
| !! | ATGTGAAGGTACCATTTATT+AGG | - | chr2.3:3297588-3297607 | MS.gene76581:intron | 30.0% |
| !! | TCTGAAACTCTGTTTTGTAA+CGG | + | chr2.3:3298018-3298037 | None:intergenic | 30.0% |
| !! | TGTAAGCCTGATTTTTGTTT+AGG | - | chr2.3:3297844-3297863 | MS.gene76581:intron | 30.0% |
| !! | TTTTAGGTACGAACTATTCA+CGG | + | chr2.3:3297495-3297514 | None:intergenic | 30.0% |
| !! | TTTTGGGTCATTGCTATTAT+CGG | - | chr2.3:3296820-3296839 | MS.gene76581:CDS | 30.0% |
| !!! | ATCTGAAGTAGTTTTGTTGT+AGG | - | chr2.3:3297672-3297691 | MS.gene76581:intron | 30.0% |
| !!! | CTTAGTTTGTGTTTTTGGTT+TGG | - | chr2.3:3296965-3296984 | MS.gene76581:intron | 30.0% |
| !!! | TGGTACTATGTTGTTTTGTT+GGG | - | chr2.3:3296781-3296800 | MS.gene76581:intron | 30.0% |
| !!! | TTGGTACTATGTTGTTTTGT+TGG | - | chr2.3:3296780-3296799 | MS.gene76581:intron | 30.0% |
| !!! | TTTTCTTGAGTTTGTTGGAT+TGG | - | chr2.3:3296700-3296719 | MS.gene76581:intron | 30.0% |
| CCATTTATTAGGTGCTTTCA+AGG | - | chr2.3:3297599-3297618 | MS.gene76581:intron | 35.0% | |
| CTCAGTTTGTCGTTATAGAA+TGG | - | chr2.3:3297258-3297277 | MS.gene76581:intron | 35.0% | |
| GCATTGTGGATTTAGTAGAT+TGG | - | chr2.3:3296911-3296930 | MS.gene76581:intron | 35.0% | |
| GGCAATTCTCTTTGTTGAAA+AGG | - | chr2.3:3297287-3297306 | MS.gene76581:intron | 35.0% | |
| GTCAACTGTAGAAAGACATT+TGG | + | chr2.3:3297726-3297745 | None:intergenic | 35.0% | |
| TATGGAGAAAAACCTGGTTT+GGG | - | chr2.3:3297407-3297426 | MS.gene76581:intron | 35.0% | |
| TGTACAACGTTGTATTTGGT+TGG | - | chr2.3:3296663-3296682 | MS.gene76581:CDS | 35.0% | |
| ! | ATTGGATCCAATTTTTGTGG+TGG | - | chr2.3:3296718-3296737 | MS.gene76581:intron | 35.0% |
| ! | GCAAAAGGATAAGATTTTGG+TGG | - | chr2.3:3297177-3297196 | MS.gene76581:intron | 35.0% |
| ! | TCATTGCTATTATCGGTGTT+TGG | - | chr2.3:3296827-3296846 | MS.gene76581:CDS | 35.0% |
| ! | TTGGATCCAATTTTTGTGGT+GGG | - | chr2.3:3296719-3296738 | MS.gene76581:intron | 35.0% |
| !! | CCTTGAAAGCACCTAATAAA+TGG | + | chr2.3:3297602-3297621 | None:intergenic | 35.0% |
| !! | TCTGTTTTGTAACGGAATTC+AGG | + | chr2.3:3298010-3298029 | None:intergenic | 35.0% |
| !! | TGGATTGGATCCAATTTTTG+TGG | - | chr2.3:3296715-3296734 | MS.gene76581:intron | 35.0% |
| !!! | ATCGGTGTTTGGTTTTTGTT+TGG | - | chr2.3:3296838-3296857 | MS.gene76581:CDS | 35.0% |
| !!! | TCGGTGTTTGGTTTTTGTTT+GGG | - | chr2.3:3296839-3296858 | MS.gene76581:CDS | 35.0% |
| AATCTAGAAGGGATTCAGAG+AGG | - | chr2.3:3297960-3297979 | MS.gene76581:intron | 40.0% | |
| AGTTTGATTGTTGGGTCTGA+TGG | - | chr2.3:3297135-3297154 | MS.gene76581:intron | 40.0% | |
| CTTGAGTATGGAGAAAAACC+TGG | - | chr2.3:3297401-3297420 | MS.gene76581:intron | 40.0% | |
| GAACCTTTGGCACTTACTTA+AGG | + | chr2.3:3297371-3297390 | None:intergenic | 40.0% | |
| GCTATCGAATTTGACAAGTC+TGG | - | chr2.3:3297755-3297774 | MS.gene76581:intron | 40.0% | |
| GTATGGAGAAAAACCTGGTT+TGG | - | chr2.3:3297406-3297425 | MS.gene76581:intron | 40.0% | |
| GTATGTTGAAACATGCAGCA+TGG | - | chr2.3:3297935-3297954 | MS.gene76581:intron | 40.0% | |
| TCTGTCAAAACAAACCAGGT+GGG | - | chr2.3:3297321-3297340 | MS.gene76581:intron | 40.0% | |
| TGAGAGAATTTCCACTCCAA+CGG | + | chr2.3:3296592-3296611 | None:intergenic | 40.0% | |
| TGGAAATTCTCTCAGGTCTT+TGG | - | chr2.3:3296598-3296617 | MS.gene76581:CDS | 40.0% | |
| TTCTGTCAAAACAAACCAGG+TGG | - | chr2.3:3297320-3297339 | MS.gene76581:intron | 40.0% | |
| TTTCTCCATACTCAAGAACC+AGG | + | chr2.3:3297397-3297416 | None:intergenic | 40.0% | |
| TTTGTTTGGGGGAAAGTAGT+GGG | - | chr2.3:3296852-3296871 | MS.gene76581:CDS | 40.0% | |
| ! | TGGATCCAATTTTTGTGGTG+GGG | - | chr2.3:3296720-3296739 | MS.gene76581:intron | 40.0% |
| !! | AAGATTTTGGTGGAGTTTGC+TGG | - | chr2.3:3297187-3297206 | MS.gene76581:intron | 40.0% |
| !! | AGAAAAACCTGGTTTGGGAA+GGG | - | chr2.3:3297412-3297431 | MS.gene76581:intron | 40.0% |
| !! | CAATTTTTGTGGTGGGGTTA+GGG | - | chr2.3:3296726-3296745 | MS.gene76581:intron | 40.0% |
| !! | TTTTGTTTGGGGGAAAGTAG+TGG | - | chr2.3:3296851-3296870 | MS.gene76581:CDS | 40.0% |
| !!! | CGGTGTTTGGTTTTTGTTTG+GGG | - | chr2.3:3296840-3296859 | MS.gene76581:CDS | 40.0% |
| !!! | GGTGTTTGGTTTTTGTTTGG+GGG | - | chr2.3:3296841-3296860 | MS.gene76581:CDS | 40.0% |
| AAGAACCAGGATCGAACCTT+TGG | + | chr2.3:3297384-3297403 | None:intergenic | 45.0% | |
| AATCTCCATCGGGAACTTAG+TGG | + | chr2.3:3297456-3297475 | None:intergenic | 45.0% | |
| AATTTCCACTCCAACGGAAC+CGG | + | chr2.3:3296586-3296605 | None:intergenic | 45.0% | |
| AGCAGTGACTAATCTCCATC+GGG | + | chr2.3:3297466-3297485 | None:intergenic | 45.0% | |
| ATCTCCATCGGGAACTTAGT+GGG | + | chr2.3:3297455-3297474 | None:intergenic | 45.0% | |
| CCTAACCCCACCACAAAAAT+TGG | + | chr2.3:3296728-3296747 | None:intergenic | 45.0% | |
| GAGCAGTGACTAATCTCCAT+CGG | + | chr2.3:3297467-3297486 | None:intergenic | 45.0% | |
| GATTGGAGTTCCGGTAATGA+CGG | - | chr2.3:3297209-3297228 | MS.gene76581:intron | 45.0% | |
| GCACCTTAAGTAAGTGCCAA+AGG | - | chr2.3:3297365-3297384 | MS.gene76581:intron | 45.0% | |
| GTTGGAGTGGAAATTCTCTC+AGG | - | chr2.3:3296591-3296610 | MS.gene76581:CDS | 45.0% | |
| TAGAAGGGATTCAGAGAGGA+TGG | - | chr2.3:3297964-3297983 | MS.gene76581:intron | 45.0% | |
| TCAGGTCTTTGGTGAACGTA+CGG | - | chr2.3:3296609-3296628 | MS.gene76581:CDS | 45.0% | |
| TCTGGTGATCATCTTGCTAC+TGG | - | chr2.3:3297773-3297792 | MS.gene76581:intron | 45.0% | |
| ! | TCGATCCTGGTTCTTGAGTA+TGG | - | chr2.3:3297389-3297408 | MS.gene76581:intron | 45.0% |
| !! | AGTTTGCTGGATTGGAGTTC+CGG | - | chr2.3:3297200-3297219 | MS.gene76581:intron | 45.0% |
| !! | CCAATTTTTGTGGTGGGGTT+AGG | - | chr2.3:3296725-3296744 | MS.gene76581:intron | 45.0% |
| !! | GAGAAAAACCTGGTTTGGGA+AGG | - | chr2.3:3297411-3297430 | MS.gene76581:intron | 45.0% |
| !! | TTTGGTGGAGTTTGCTGGAT+TGG | - | chr2.3:3297192-3297211 | MS.gene76581:intron | 45.0% |
| AAGTGCCAAAGGTTCGATCC+TGG | - | chr2.3:3297376-3297395 | MS.gene76581:intron | 50.0% | |
| ATATGCCGTGCGTCATGTGA+AGG | - | chr2.3:3297574-3297593 | MS.gene76581:intron | 50.0% | |
| CATCTTGCTACTGGTGATCG+TGG | - | chr2.3:3297782-3297801 | MS.gene76581:intron | 50.0% | |
| GAATTCAGGATGCCTGCTGA+TGG | + | chr2.3:3297996-3298015 | None:intergenic | 50.0% | |
| GATACCACCACCGTCATTAC+CGG | + | chr2.3:3297222-3297241 | None:intergenic | 50.0% | |
| GATCTGTCGTGGATCGTGTT+TGG | - | chr2.3:3296757-3296776 | MS.gene76581:intron | 50.0% | |
| GCAGCATGGCGAATCTAGAA+GGG | - | chr2.3:3297949-3297968 | MS.gene76581:intron | 50.0% | |
| GTCGAGTGGTACTCTTTGAG+AGG | - | chr2.3:3297807-3297826 | MS.gene76581:intron | 50.0% | |
| GTCGTGTTGCGTAGTTCGAT+TGG | - | chr2.3:3297099-3297118 | MS.gene76581:intron | 50.0% | |
| TAGGTGCTTTCAAGGGGAAG+TGG | - | chr2.3:3297607-3297626 | MS.gene76581:intron | 50.0% | |
| TGATGTTGTTGCAGCAGCTC+CGG | - | chr2.3:3296552-3296571 | MS.gene76581:CDS | 50.0% | |
| TGCAGCATGGCGAATCTAGA+AGG | - | chr2.3:3297948-3297967 | MS.gene76581:intron | 50.0% | |
| TGGTACCTTCACATGACGCA+CGG | + | chr2.3:3297582-3297601 | None:intergenic | 50.0% | |
| TGTCGTGGATCGTGTTTGGT+TGG | - | chr2.3:3296761-3296780 | MS.gene76581:intron | 50.0% | |
| ! | GGGTTTGATTCGATCTGTCG+TGG | - | chr2.3:3296746-3296765 | MS.gene76581:intron | 50.0% |
| !! | GGATGGACTATTCCATCAGC+AGG | - | chr2.3:3297981-3298000 | MS.gene76581:intron | 50.0% |
| AGTTCCGGTAATGACGGTGG+TGG | - | chr2.3:3297215-3297234 | MS.gene76581:intron | 55.0% | |
| CTTGCTACTGGTGATCGTGG+TGG | - | chr2.3:3297785-3297804 | MS.gene76581:intron | 55.0% | |
| GCTGGTGAAGAGGTTCAGGA+AGG | - | chr2.3:3296631-3296650 | MS.gene76581:CDS | 55.0% | |
| GTCGTTATAGAATGGGCGCG+TGG | - | chr2.3:3297266-3297285 | MS.gene76581:intron | 55.0% | |
| GTCTTTGGTGAACGTACGGC+TGG | - | chr2.3:3296613-3296632 | MS.gene76581:CDS | 55.0% | |
| GTTTCAGAGTCACGAGCCTG+AGG | - | chr2.3:3298030-3298049 | MS.gene76581:CDS | 55.0% | |
| TACGGCTGGTGAAGAGGTTC+AGG | - | chr2.3:3296627-3296646 | MS.gene76581:CDS | 55.0% | |
| TGAACGTACGGCTGGTGAAG+AGG | - | chr2.3:3296621-3296640 | MS.gene76581:CDS | 55.0% | |
| TGCCTGAGTCCCTTACCACT+CGG | + | chr2.3:3297348-3297367 | None:intergenic | 55.0% | |
| TGGAGTTCCGGTAATGACGG+TGG | - | chr2.3:3297212-3297231 | MS.gene76581:intron | 55.0% | |
| ! | AACTTAGTGGGCACGCAAGG+TGG | + | chr2.3:3297443-3297462 | None:intergenic | 55.0% |
| ! | ACTTAGTGGGCACGCAAGGT+GGG | + | chr2.3:3297442-3297461 | None:intergenic | 55.0% |
| ACAAACCAGGTGGGTCCGAG+TGG | - | chr2.3:3297330-3297349 | MS.gene76581:intron | 60.0% | |
| CAGGTGGGTCCGAGTGGTAA+GGG | - | chr2.3:3297336-3297355 | MS.gene76581:intron | 60.0% | |
| CGTGCCCACTAAGTTCCCGA+TGG | - | chr2.3:3297448-3297467 | MS.gene76581:intron | 60.0% | |
| GGGTTCTCCCTTCCCAAACC+AGG | + | chr2.3:3297422-3297441 | None:intergenic | 60.0% | |
| GTCCGAGTGGTAAGGGACTC+AGG | - | chr2.3:3297343-3297362 | MS.gene76581:intron | 60.0% | |
| TGGTGATCGTGGTGGTCGAG+TGG | - | chr2.3:3297793-3297812 | MS.gene76581:intron | 60.0% | |
| TGTTGTTGCAGCAGCTCCGG+CGG | - | chr2.3:3296555-3296574 | MS.gene76581:CDS | 60.0% | |
| TTCCACTCCAACGGAACCGG+TGG | + | chr2.3:3296583-3296602 | None:intergenic | 60.0% | |
| ! | GGGAACTTAGTGGGCACGCA+AGG | + | chr2.3:3297446-3297465 | None:intergenic | 60.0% |
| CCAGGTGGGTCCGAGTGGTA+AGG | - | chr2.3:3297335-3297354 | MS.gene76581:intron | 65.0% | |
| CCTTACCACTCGGACCCACC+TGG | + | chr2.3:3297338-3297357 | None:intergenic | 65.0% | |
| GTTGTTGCAGCAGCTCCGGC+GGG | - | chr2.3:3296556-3296575 | MS.gene76581:CDS | 65.0% | |
| !! | GTCCACCGGTTCCGTTGGAG+TGG | - | chr2.3:3296578-3296597 | MS.gene76581:CDS | 65.0% |
| AACGGAACCGGTGGACCCGC+CGG | + | chr2.3:3296574-3296593 | None:intergenic | 70.0% | |
| AGCAGCTCCGGCGGGTCCAC+CGG | - | chr2.3:3296564-3296583 | MS.gene76581:CDS | 75.0% | |
| !! | GGCGGGTCCACCGGTTCCGT+TGG | - | chr2.3:3296573-3296592 | MS.gene76581:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.3 | gene | 3296538 | 3298099 | 3296538 | ID=MS.gene76581 |
| chr2.3 | mRNA | 3296538 | 3298099 | 3296538 | ID=MS.gene76581.t1;Parent=MS.gene76581 |
| chr2.3 | exon | 3297985 | 3298099 | 3297985 | ID=MS.gene76581.t1.exon1;Parent=MS.gene76581.t1 |
| chr2.3 | CDS | 3297985 | 3298099 | 3297985 | ID=cds.MS.gene76581.t1;Parent=MS.gene76581.t1 |
| chr2.3 | exon | 3296793 | 3296896 | 3296793 | ID=MS.gene76581.t1.exon2;Parent=MS.gene76581.t1 |
| chr2.3 | CDS | 3296793 | 3296896 | 3296793 | ID=cds.MS.gene76581.t1;Parent=MS.gene76581.t1 |
| chr2.3 | exon | 3296538 | 3296684 | 3296538 | ID=MS.gene76581.t1.exon3;Parent=MS.gene76581.t1 |
| chr2.3 | CDS | 3296538 | 3296684 | 3296538 | ID=cds.MS.gene76581.t1;Parent=MS.gene76581.t1 |
| Gene Sequence |
| Protein sequence |
