Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76595.t1 | XP_003613800.1 | 94 | 199 | 12 | 0 | 2 | 200 | 37 | 235 | 6.40E-112 | 413.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76595.t1 | P42815 | 52.6 | 194 | 92 | 0 | 1 | 194 | 29 | 222 | 8.0e-63 | 241.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76595.t1 | G7KFB2 | 94.0 | 199 | 12 | 0 | 2 | 200 | 37 | 235 | 4.6e-112 | 413.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051996 | MS.gene76595 | 0.825103 | 5.63E-54 | -1.69E-46 |
| MS.gene054742 | MS.gene76595 | 0.838031 | 3.66E-57 | -1.69E-46 |
| MS.gene056330 | MS.gene76595 | 0.831735 | 1.41E-55 | -1.69E-46 |
| MS.gene056680 | MS.gene76595 | 0.842935 | 1.91E-58 | -1.69E-46 |
| MS.gene056920 | MS.gene76595 | 0.814359 | 1.60E-51 | -1.69E-46 |
| MS.gene060087 | MS.gene76595 | 0.828601 | 8.21E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76595.t1 | MTR_5g041080 | 93.970 | 199 | 12 | 0 | 2 | 200 | 37 | 235 | 1.49e-141 | 394 |
| MS.gene76595.t1 | MTR_5g041040 | 72.539 | 193 | 53 | 0 | 2 | 194 | 36 | 228 | 1.18e-95 | 278 |
| MS.gene76595.t1 | MTR_5g041010 | 63.212 | 193 | 71 | 0 | 2 | 194 | 35 | 227 | 3.33e-90 | 264 |
| MS.gene76595.t1 | MTR_5g041095 | 66.154 | 195 | 64 | 2 | 1 | 194 | 35 | 228 | 5.65e-85 | 251 |
| MS.gene76595.t1 | MTR_5g040940 | 54.639 | 194 | 88 | 0 | 1 | 194 | 35 | 228 | 2.95e-76 | 228 |
| MS.gene76595.t1 | MTR_5g040960 | 53.061 | 196 | 90 | 2 | 1 | 194 | 35 | 230 | 3.80e-71 | 216 |
| MS.gene76595.t1 | MTR_6g071425 | 36.111 | 180 | 107 | 6 | 3 | 177 | 87 | 263 | 6.14e-22 | 90.5 |
| MS.gene76595.t1 | MTR_2g021750 | 34.270 | 178 | 106 | 7 | 2 | 178 | 165 | 332 | 7.99e-22 | 91.3 |
| MS.gene76595.t1 | MTR_2g021830 | 31.285 | 179 | 106 | 7 | 2 | 178 | 14 | 177 | 3.97e-21 | 86.7 |
| MS.gene76595.t1 | MTR_0129s0080 | 34.759 | 187 | 108 | 9 | 2 | 180 | 33 | 213 | 6.36e-20 | 84.3 |
| MS.gene76595.t1 | MTR_5g086770 | 33.117 | 154 | 92 | 4 | 26 | 177 | 63 | 207 | 2.45e-18 | 80.1 |
| MS.gene76595.t1 | MTR_6g071505 | 34.946 | 186 | 101 | 9 | 3 | 179 | 80 | 254 | 3.81e-18 | 80.5 |
| MS.gene76595.t1 | MTR_8g028080 | 36.571 | 175 | 87 | 6 | 1 | 152 | 50 | 223 | 6.33e-18 | 80.1 |
| MS.gene76595.t1 | MTR_2g104370 | 31.138 | 167 | 98 | 5 | 22 | 177 | 26 | 186 | 8.58e-18 | 78.2 |
| MS.gene76595.t1 | MTR_3g030640 | 32.653 | 196 | 114 | 11 | 3 | 191 | 83 | 267 | 1.17e-16 | 76.3 |
| MS.gene76595.t1 | MTR_4g057825 | 33.136 | 169 | 98 | 8 | 25 | 191 | 47 | 202 | 5.74e-16 | 73.2 |
| MS.gene76595.t1 | MTR_5g022810 | 30.542 | 203 | 124 | 11 | 1 | 191 | 31 | 228 | 1.09e-15 | 73.2 |
| MS.gene76595.t1 | MTR_3g030660 | 30.964 | 197 | 116 | 10 | 3 | 191 | 88 | 272 | 2.40e-15 | 72.8 |
| MS.gene76595.t1 | MTR_5g086410 | 27.778 | 180 | 121 | 6 | 1 | 178 | 27 | 199 | 1.18e-14 | 70.1 |
| MS.gene76595.t1 | MTR_6g090200 | 28.125 | 192 | 119 | 9 | 2 | 191 | 30 | 204 | 2.97e-13 | 66.2 |
| MS.gene76595.t1 | MTR_2g021910 | 28.324 | 173 | 110 | 6 | 1 | 173 | 252 | 410 | 6.49e-13 | 67.0 |
| MS.gene76595.t1 | MTR_2g021910 | 28.342 | 187 | 117 | 8 | 1 | 185 | 549 | 720 | 1.05e-11 | 63.5 |
| MS.gene76595.t1 | MTR_0002s1200 | 31.111 | 180 | 114 | 6 | 1 | 178 | 111 | 282 | 1.00e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76595.t1 | AT1G14220 | 57.216 | 194 | 83 | 0 | 1 | 194 | 35 | 228 | 1.53e-82 | 244 |
| MS.gene76595.t1 | AT1G26820 | 52.577 | 194 | 92 | 0 | 1 | 194 | 29 | 222 | 2.16e-76 | 229 |
| MS.gene76595.t1 | AT2G02990 | 50.515 | 194 | 96 | 0 | 1 | 194 | 37 | 230 | 1.81e-69 | 211 |
| MS.gene76595.t1 | AT1G14210 | 43.229 | 192 | 105 | 2 | 3 | 191 | 35 | 225 | 5.58e-52 | 167 |
| MS.gene76595.t1 | AT2G39780 | 39.024 | 164 | 88 | 5 | 1 | 153 | 39 | 201 | 1.31e-27 | 105 |
| MS.gene76595.t1 | AT2G39780 | 30.675 | 163 | 71 | 5 | 1 | 153 | 39 | 169 | 1.07e-12 | 64.7 |
Find 42 sgRNAs with CRISPR-Local
Find 105 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCGCCAGAGTTTAACATTTA+TGG | 0.042367 | 5.1:+31041459 | MS.gene76595:CDS |
| TTGAGAACTTGGAATTAAAT+TGG | 0.210966 | 5.1:+31042234 | MS.gene76595:CDS |
| TACATGTGTGTGGACACTTC+TGG | 0.257104 | 5.1:+31042758 | MS.gene76595:CDS |
| CAGTACAATTCTCCAAGTTT+TGG | 0.277934 | 5.1:+31042831 | MS.gene76595:CDS |
| CCCAGACCTCATTGAGAACT+TGG | 0.356257 | 5.1:+31042223 | MS.gene76595:CDS |
| TCTCTATTACATACTATTCC+TGG | 0.362370 | 5.1:-31042704 | None:intergenic |
| AAGTGTCTTTGATAAATCTA+AGG | 0.366571 | 5.1:+31041533 | MS.gene76595:CDS |
| GGCGGTAGAATCGGGGTAAT+CGG | 0.372253 | 5.1:-31041441 | None:intergenic |
| TCTTGTTACCTGCGTTCTTA+AGG | 0.373296 | 5.1:-31042406 | None:intergenic |
| TTAAACTCTGGCGGTAGAAT+CGG | 0.380420 | 5.1:-31041450 | None:intergenic |
| GTGTTGTAAAATTTATCATC+TGG | 0.398041 | 5.1:-31042638 | None:intergenic |
| TCCAAGTTCTCAATGAGGTC+TGG | 0.401548 | 5.1:-31042224 | None:intergenic |
| TAAACTCTGGCGGTAGAATC+GGG | 0.406468 | 5.1:-31041449 | None:intergenic |
| ACATGTGTGTGGACACTTCT+GGG | 0.410973 | 5.1:+31042759 | MS.gene76595:CDS |
| AACTCAAAAGTATAAAAGTA+TGG | 0.441795 | 5.1:+31042276 | MS.gene76595:CDS |
| AATTAAATTGGCCATCTTTG+AGG | 0.442578 | 5.1:+31042246 | MS.gene76595:CDS |
| AAACAAATTCACCCAAAACT+TGG | 0.469502 | 5.1:-31042843 | None:intergenic |
| CCAAGTTCTCAATGAGGTCT+GGG | 0.473651 | 5.1:-31042223 | None:intergenic |
| TAAAAGTATGGTCACATGAA+TGG | 0.476479 | 5.1:+31042288 | MS.gene76595:CDS |
| ATAGTATGTAATAGAGATCC+AGG | 0.483549 | 5.1:+31042710 | MS.gene76595:CDS |
| GAGTGTCCTGGTGTTCCAAT+GGG | 0.483868 | 5.1:+31042794 | MS.gene76595:CDS |
| TGAGTGTCCTGGTGTTCCAA+TGG | 0.485528 | 5.1:+31042793 | MS.gene76595:CDS |
| AGTTGTGGACACCTCAAAGA+TGG | 0.499651 | 5.1:-31042257 | None:intergenic |
| CTTTCAATATCACAGTTTGA+AGG | 0.503303 | 5.1:-31041513 | None:intergenic |
| TCAAATTTCATTGAGTGTCC+TGG | 0.507081 | 5.1:+31042782 | MS.gene76595:CDS |
| CACGAACCCATTGGAACACC+AGG | 0.515636 | 5.1:-31042800 | None:intergenic |
| CTCTATTACATACTATTCCT+GGG | 0.540847 | 5.1:-31042703 | None:intergenic |
| AGTTTAACATTTATGGACTC+CGG | 0.541467 | 5.1:+31041466 | MS.gene76595:CDS |
| TAATCGGATAACAGCAGCTA+TGG | 0.545192 | 5.1:-31041425 | None:intergenic |
| TTTAAAAGTTTACATGTGTG+TGG | 0.547271 | 5.1:+31042748 | MS.gene76595:CDS |
| TTGTCAATGATGCAGTGGCC+AGG | 0.556985 | 5.1:+31041384 | None:intergenic |
| GTATCACCACACGAACCCAT+TGG | 0.563059 | 5.1:-31042809 | None:intergenic |
| TTAATTCCAAGTTCTCAATG+AGG | 0.586966 | 5.1:-31042229 | None:intergenic |
| TTTGTGTCACAGTATGCTCC+TGG | 0.587043 | 5.1:-31041402 | None:intergenic |
| AGTCCATAAATGTTAAACTC+TGG | 0.587934 | 5.1:-31041462 | None:intergenic |
| AAAGCTACAGGGTTTCTCCC+AGG | 0.599044 | 5.1:+31042686 | MS.gene76595:CDS |
| ATTCAAATCCTTAAGAACGC+AGG | 0.626601 | 5.1:+31042398 | MS.gene76595:CDS |
| CCATAAATGTTAAACTCTGG+CGG | 0.630251 | 5.1:-31041459 | None:intergenic |
| ACTGTTTGTCAATGATGCAG+TGG | 0.677413 | 5.1:+31041379 | None:intergenic |
| AAACTCTGGCGGTAGAATCG+GGG | 0.680865 | 5.1:-31041448 | None:intergenic |
| GGTGTTCCAATGGGTTCGTG+TGG | 0.681516 | 5.1:+31042803 | MS.gene76595:CDS |
| TCACATGAATGGATGAAACA+TGG | 0.691919 | 5.1:+31042299 | MS.gene76595:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGGAAAAAAATATATAAAAA+AGG | - | chr5.1:31041942-31041961 | None:intergenic | 10.0% |
| !! | ATCATTAAATAAAATATGAT+AGG | + | chr5.1:31041704-31041723 | MS.gene76595:intron | 10.0% |
| !! | GAAAAAAATATATAAAAAAG+GGG | - | chr5.1:31041940-31041959 | None:intergenic | 10.0% |
| !! | GGAAAAAAATATATAAAAAA+GGG | - | chr5.1:31041941-31041960 | None:intergenic | 10.0% |
| !! | TAATATAAATAGGAAAAAAA+AGG | - | chr5.1:31041962-31041981 | None:intergenic | 10.0% |
| !! | TCATTAAATAAAATATGATA+GGG | + | chr5.1:31041705-31041724 | MS.gene76595:intron | 10.0% |
| !!! | TTTTCCTATTTATATTATAT+GGG | + | chr5.1:31041965-31041984 | MS.gene76595:intron | 10.0% |
| !!! | TTTTGAAAAATGTATTTAAT+TGG | + | chr5.1:31041567-31041586 | MS.gene76595:intron | 10.0% |
| !!! | TTTTTCCTATTTATATTATA+TGG | + | chr5.1:31041964-31041983 | MS.gene76595:intron | 10.0% |
| !! | TAACAAGGAAAATAAATTTA+TGG | - | chr5.1:31041887-31041906 | None:intergenic | 15.0% |
| !! | TGACAAATATTTCTTAAAAA+TGG | + | chr5.1:31042486-31042505 | MS.gene76595:intron | 15.0% |
| !!! | TATATATCTTTTTTTACTAC+TGG | - | chr5.1:31042106-31042125 | None:intergenic | 15.0% |
| !! | TTAAATAAAATATGATAGGG+AGG | + | chr5.1:31041708-31041727 | MS.gene76595:intron | 20.0% |
| !!! | AACTCAAAAGTATAAAAGTA+TGG | + | chr5.1:31042276-31042295 | MS.gene76595:CDS | 20.0% |
| !!! | AGTTTTTCAATAGAGATATA+AGG | - | chr5.1:31042171-31042190 | None:intergenic | 20.0% |
| !!! | GTTTTTCAATAGAGATATAA+GGG | - | chr5.1:31042170-31042189 | None:intergenic | 20.0% |
| !!! | TGCAAATATATCTTACTTTT+TGG | - | chr5.1:31042574-31042593 | None:intergenic | 20.0% |
| !!! | TGTTAGTACATTAATTTTTC+CGG | + | chr5.1:31041606-31041625 | MS.gene76595:intron | 20.0% |
| !!! | TTGTTAATGTTTTTCTCATA+GGG | + | chr5.1:31041901-31041920 | MS.gene76595:intron | 20.0% |
| ! | AAGTGTCTTTGATAAATCTA+AGG | + | chr5.1:31041533-31041552 | MS.gene76595:CDS | 25.0% |
| ! | ATTTATATTATATGGGTGAG+TGG | + | chr5.1:31041972-31041991 | MS.gene76595:intron | 25.0% |
| ! | CTATGAGAAAAACATTAACA+AGG | - | chr5.1:31041902-31041921 | None:intergenic | 25.0% |
| ! | CTCACCCATATAATATAAAT+AGG | - | chr5.1:31041972-31041991 | None:intergenic | 25.0% |
| ! | GAAAATTAAGCAACTCAAAT+CGG | - | chr5.1:31041859-31041878 | None:intergenic | 25.0% |
| ! | GTGTTGTAAAATTTATCATC+TGG | - | chr5.1:31042641-31042660 | None:intergenic | 25.0% |
| ! | TCAATGAGTCATGTTTAATT+TGG | + | chr5.1:31042193-31042212 | MS.gene76595:intron | 25.0% |
| ! | TTGAGAACTTGGAATTAAAT+TGG | + | chr5.1:31042234-31042253 | MS.gene76595:CDS | 25.0% |
| ! | TTTAAAAGTTTACATGTGTG+TGG | + | chr5.1:31042748-31042767 | MS.gene76595:CDS | 25.0% |
| !! | CTTGTTAATGTTTTTCTCAT+AGG | + | chr5.1:31041900-31041919 | MS.gene76595:intron | 25.0% |
| !! | TTTTTACAAAATCAAGAGTG+AGG | - | chr5.1:31042063-31042082 | None:intergenic | 25.0% |
| !!! | ACTTTTATACTTTTGAGTTG+TGG | - | chr5.1:31042275-31042294 | None:intergenic | 25.0% |
| AAACAAATTCACCCAAAACT+TGG | - | chr5.1:31042846-31042865 | None:intergenic | 30.0% | |
| AATGATGAAAAGAATGTGCA+TGG | - | chr5.1:31041667-31041686 | None:intergenic | 30.0% | |
| AATTAAATTGGCCATCTTTG+AGG | + | chr5.1:31042246-31042265 | MS.gene76595:CDS | 30.0% | |
| AGTCCATAAATGTTAAACTC+TGG | - | chr5.1:31041465-31041484 | None:intergenic | 30.0% | |
| AGTTTAACATTTATGGACTC+CGG | + | chr5.1:31041466-31041485 | MS.gene76595:CDS | 30.0% | |
| ATAGTATGTAATAGAGATCC+AGG | + | chr5.1:31042710-31042729 | MS.gene76595:CDS | 30.0% | |
| CTCTATTACATACTATTCCT+GGG | - | chr5.1:31042706-31042725 | None:intergenic | 30.0% | |
| CTTTCAATATCACAGTTTGA+AGG | - | chr5.1:31041516-31041535 | None:intergenic | 30.0% | |
| TAATTGCAATGAATTCCACA+GGG | + | chr5.1:31042609-31042628 | MS.gene76595:intron | 30.0% | |
| TCTCTATTACATACTATTCC+TGG | - | chr5.1:31042707-31042726 | None:intergenic | 30.0% | |
| TTAATTCCAAGTTCTCAATG+AGG | - | chr5.1:31042232-31042251 | None:intergenic | 30.0% | |
| TTAATTGCAATGAATTCCAC+AGG | + | chr5.1:31042608-31042627 | MS.gene76595:intron | 30.0% | |
| ! | AGTACAATTCTCCAAGTTTT+GGG | + | chr5.1:31042832-31042851 | MS.gene76595:CDS | 30.0% |
| ! | TAAAAGTATGGTCACATGAA+TGG | + | chr5.1:31042288-31042307 | MS.gene76595:CDS | 30.0% |
| !! | ATCACGTACTCTATTTTAGA+TGG | + | chr5.1:31041789-31041808 | MS.gene76595:intron | 30.0% |
| AAAAACCTCCCTAACGAAAA+TGG | - | chr5.1:31041828-31041847 | None:intergenic | 35.0% | |
| AAAACCTCCCTAACGAAAAT+GGG | - | chr5.1:31041827-31041846 | None:intergenic | 35.0% | |
| ACGGACAAATTGGTTAATCA+TGG | + | chr5.1:31041762-31041781 | MS.gene76595:intron | 35.0% | |
| ATGCCATACAAAAAGCTACA+GGG | + | chr5.1:31042675-31042694 | MS.gene76595:CDS | 35.0% | |
| ATTCAAATCCTTAAGAACGC+AGG | + | chr5.1:31042398-31042417 | MS.gene76595:CDS | 35.0% | |
| CCATAAATGTTAAACTCTGG+CGG | - | chr5.1:31041462-31041481 | None:intergenic | 35.0% | |
| GATTTAATCGAGATGTTCAG+CGG | + | chr5.1:31042023-31042042 | MS.gene76595:intron | 35.0% | |
| GCTGAACATCTCGATTAAAT+CGG | - | chr5.1:31042024-31042043 | None:intergenic | 35.0% | |
| GTGTTTCATGACTCATTAGA+TGG | - | chr5.1:31042444-31042463 | None:intergenic | 35.0% | |
| TCAAATTTCATTGAGTGTCC+TGG | + | chr5.1:31042782-31042801 | MS.gene76595:CDS | 35.0% | |
| TCACATGAATGGATGAAACA+TGG | + | chr5.1:31042299-31042318 | MS.gene76595:CDS | 35.0% | |
| TCTAATCATCGAGAAGGTAA+TGG | + | chr5.1:31041735-31041754 | MS.gene76595:intron | 35.0% | |
| TTACAAAATCAAGAGTGAGG+AGG | - | chr5.1:31042060-31042079 | None:intergenic | 35.0% | |
| ! | AAACCCTGTAGCTTTTTGTA+TGG | - | chr5.1:31042681-31042700 | None:intergenic | 35.0% |
| ! | CAGTACAATTCTCCAAGTTT+TGG | + | chr5.1:31042831-31042850 | MS.gene76595:CDS | 35.0% |
| ! | GGTTTTTCTAATCATCGAGA+AGG | + | chr5.1:31041729-31041748 | MS.gene76595:intron | 35.0% |
| !! | AAAAGCTGACTTTTAAGTCC+TGG | - | chr5.1:31042731-31042750 | None:intergenic | 35.0% |
| !! | ACGTACTCTATTTTAGATGG+TGG | + | chr5.1:31041792-31041811 | MS.gene76595:intron | 35.0% |
| !! | AGGAGTTGATCCATCATTTT+TGG | - | chr5.1:31041496-31041515 | None:intergenic | 35.0% |
| !! | CGTACTCTATTTTAGATGGT+GGG | + | chr5.1:31041793-31041812 | MS.gene76595:intron | 35.0% |
| !! | CTTATGCATTATTGACTTGC+CGG | - | chr5.1:31041628-31041647 | None:intergenic | 35.0% |
| !!! | GTTGATCCATCATTTTTGGT+CGG | - | chr5.1:31041492-31041511 | None:intergenic | 35.0% |
| AAACCTCCCTAACGAAAATG+GGG | - | chr5.1:31041826-31041845 | None:intergenic | 40.0% | |
| CCGCCAGAGTTTAACATTTA+TGG | + | chr5.1:31041459-31041478 | MS.gene76595:CDS | 40.0% | |
| CGGCAAGTCAATAATGCATA+AGG | + | chr5.1:31041626-31041645 | MS.gene76595:intron | 40.0% | |
| GATGCCATACAAAAAGCTAC+AGG | + | chr5.1:31042674-31042693 | MS.gene76595:CDS | 40.0% | |
| TAATCGGATAACAGCAGCTA+TGG | - | chr5.1:31041428-31041447 | None:intergenic | 40.0% | |
| TCTTGTTACCTGCGTTCTTA+AGG | - | chr5.1:31042409-31042428 | None:intergenic | 40.0% | |
| TTAAACTCTGGCGGTAGAAT+CGG | - | chr5.1:31041453-31041472 | None:intergenic | 40.0% | |
| ! | ACACTATCCCCATTTTCGTT+AGG | + | chr5.1:31041816-31041835 | MS.gene76595:intron | 40.0% |
| ! | CACTATCCCCATTTTCGTTA+GGG | + | chr5.1:31041817-31041836 | MS.gene76595:intron | 40.0% |
| ! | TAATGGAAGCACGGACAAAT+TGG | + | chr5.1:31041752-31041771 | MS.gene76595:intron | 40.0% |
| ACATGTGTGTGGACACTTCT+GGG | + | chr5.1:31042759-31042778 | MS.gene76595:CDS | 45.0% | |
| AGTTGTGGACACCTCAAAGA+TGG | - | chr5.1:31042260-31042279 | None:intergenic | 45.0% | |
| ATTATATGGGTGAGTGGCAG+AGG | + | chr5.1:31041978-31041997 | MS.gene76595:intron | 45.0% | |
| CCAAGTTCTCAATGAGGTCT+GGG | - | chr5.1:31042226-31042245 | None:intergenic | 45.0% | |
| TAAACTCTGGCGGTAGAATC+GGG | - | chr5.1:31041452-31041471 | None:intergenic | 45.0% | |
| TACATGTGTGTGGACACTTC+TGG | + | chr5.1:31042758-31042777 | MS.gene76595:CDS | 45.0% | |
| TCCAAGTTCTCAATGAGGTC+TGG | - | chr5.1:31042227-31042246 | None:intergenic | 45.0% | |
| TTTGTGTCACAGTATGCTCC+TGG | - | chr5.1:31041405-31041424 | None:intergenic | 45.0% | |
| ! | ATCATCTGGTTCAATCCCTG+TGG | - | chr5.1:31042627-31042646 | None:intergenic | 45.0% |
| ! | TATCCCCATTTTCGTTAGGG+AGG | + | chr5.1:31041820-31041839 | MS.gene76595:intron | 45.0% |
| !! | TCGAGAAGGTAATGGAAGCA+CGG | + | chr5.1:31041743-31041762 | MS.gene76595:intron | 45.0% |
| !!! | ATCCATCATTTTTGGTCGGC+CGG | - | chr5.1:31041488-31041507 | None:intergenic | 45.0% |
| AAACTCTGGCGGTAGAATCG+GGG | - | chr5.1:31041451-31041470 | None:intergenic | 50.0% | |
| AAAGCTACAGGGTTTCTCCC+AGG | + | chr5.1:31042686-31042705 | MS.gene76595:CDS | 50.0% | |
| CCCAGACCTCATTGAGAACT+TGG | + | chr5.1:31042223-31042242 | MS.gene76595:CDS | 50.0% | |
| CGATTAAATCGGCACCTGCA+GGG | - | chr5.1:31042013-31042032 | None:intergenic | 50.0% | |
| GAGTGTCCTGGTGTTCCAAT+GGG | + | chr5.1:31042794-31042813 | MS.gene76595:CDS | 50.0% | |
| GATTAAATCGGCACCTGCAG+GGG | - | chr5.1:31042012-31042031 | None:intergenic | 50.0% | |
| GTATCACCACACGAACCCAT+TGG | - | chr5.1:31042812-31042831 | None:intergenic | 50.0% | |
| TCGATTAAATCGGCACCTGC+AGG | - | chr5.1:31042014-31042033 | None:intergenic | 50.0% | |
| TGAGTGTCCTGGTGTTCCAA+TGG | + | chr5.1:31042793-31042812 | MS.gene76595:CDS | 50.0% | |
| ATGGGTGAGTGGCAGAGGAT+AGG | + | chr5.1:31041983-31042002 | MS.gene76595:intron | 55.0% | |
| CACGAACCCATTGGAACACC+AGG | - | chr5.1:31042803-31042822 | None:intergenic | 55.0% | |
| CTCCGGCCGACCAAAAATGA+TGG | + | chr5.1:31041483-31041502 | MS.gene76595:CDS | 55.0% | |
| GGCGGTAGAATCGGGGTAAT+CGG | - | chr5.1:31041444-31041463 | None:intergenic | 55.0% | |
| ! | GGTGTTCCAATGGGTTCGTG+TGG | + | chr5.1:31042803-31042822 | MS.gene76595:CDS | 55.0% |
| AGAGGATAGGAGTCCCCTGC+AGG | + | chr5.1:31041996-31042015 | MS.gene76595:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 31041393 | 31042871 | 31041393 | ID=MS.gene76595 |
| chr5.1 | mRNA | 31041393 | 31042871 | 31041393 | ID=MS.gene76595.t1;Parent=MS.gene76595 |
| chr5.1 | exon | 31041393 | 31041554 | 31041393 | ID=MS.gene76595.t1.exon1;Parent=MS.gene76595.t1 |
| chr5.1 | CDS | 31041393 | 31041554 | 31041393 | ID=cds.MS.gene76595.t1;Parent=MS.gene76595.t1 |
| chr5.1 | exon | 31042221 | 31042419 | 31042221 | ID=MS.gene76595.t1.exon2;Parent=MS.gene76595.t1 |
| chr5.1 | CDS | 31042221 | 31042419 | 31042221 | ID=cds.MS.gene76595.t1;Parent=MS.gene76595.t1 |
| chr5.1 | exon | 31042630 | 31042871 | 31042630 | ID=MS.gene76595.t1.exon3;Parent=MS.gene76595.t1 |
| chr5.1 | CDS | 31042630 | 31042871 | 31042630 | ID=cds.MS.gene76595.t1;Parent=MS.gene76595.t1 |
| Gene Sequence |
| Protein sequence |
