Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056680.t1 | XP_013456384.1 | 91.8 | 438 | 36 | 0 | 1 | 438 | 1 | 438 | 1.70E-229 | 805.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056680.t1 | Q9LN62 | 68.4 | 427 | 130 | 4 | 13 | 437 | 5 | 428 | 3.3e-162 | 572.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056680.t1 | A0A072UX35 | 91.8 | 438 | 36 | 0 | 1 | 438 | 1 | 438 | 1.2e-229 | 805.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050720 | MS.gene056680 | 0.829192 | 5.91E-55 | -1.69E-46 |
| MS.gene050722 | MS.gene056680 | 0.801929 | 7.14E-49 | -1.69E-46 |
| MS.gene050725 | MS.gene056680 | 0.800481 | 1.41E-48 | -1.69E-46 |
| MS.gene051996 | MS.gene056680 | 0.832831 | 7.55E-56 | -1.69E-46 |
| MS.gene052223 | MS.gene056680 | 0.821555 | 3.79E-53 | -1.69E-46 |
| MS.gene053406 | MS.gene056680 | 0.806503 | 7.97E-50 | -1.69E-46 |
| MS.gene054277 | MS.gene056680 | 0.810517 | 1.11E-50 | -1.69E-46 |
| MS.gene054742 | MS.gene056680 | 0.843872 | 1.07E-58 | -1.69E-46 |
| MS.gene056330 | MS.gene056680 | 0.828047 | 1.12E-54 | -1.69E-46 |
| MS.gene056680 | MS.gene056920 | 0.844655 | 6.61E-59 | -1.69E-46 |
| MS.gene056680 | MS.gene059891 | 0.844132 | 9.14E-59 | -1.69E-46 |
| MS.gene056680 | MS.gene059892 | 0.838262 | 3.19E-57 | -1.69E-46 |
| MS.gene056680 | MS.gene060087 | 0.869106 | 3.97E-66 | -1.69E-46 |
| MS.gene056680 | MS.gene061094 | 0.810311 | 1.23E-50 | -1.69E-46 |
| MS.gene056680 | MS.gene063912 | 0.819173 | 1.33E-52 | -1.69E-46 |
| MS.gene056680 | MS.gene063988 | 0.830365 | 3.06E-55 | -1.69E-46 |
| MS.gene056680 | MS.gene065724 | 0.811131 | 8.16E-51 | -1.69E-46 |
| MS.gene056680 | MS.gene065728 | 0.802895 | 4.51E-49 | -1.69E-46 |
| MS.gene056680 | MS.gene065842 | 0.819307 | 1.24E-52 | -1.69E-46 |
| MS.gene056680 | MS.gene06593 | 0.813433 | 2.57E-51 | -1.69E-46 |
| MS.gene056680 | MS.gene066602 | 0.834333 | 3.18E-56 | -1.69E-46 |
| MS.gene056680 | MS.gene066937 | 0.819436 | 1.16E-52 | -1.69E-46 |
| MS.gene056680 | MS.gene06756 | 0.871136 | 8.60E-67 | -1.69E-46 |
| MS.gene056680 | MS.gene06805 | 0.813278 | 2.77E-51 | -1.69E-46 |
| MS.gene056680 | MS.gene07005 | 0.813775 | 2.16E-51 | -1.69E-46 |
| MS.gene056680 | MS.gene072622 | 0.811937 | 5.45E-51 | -1.69E-46 |
| MS.gene056680 | MS.gene072623 | 0.805743 | 1.15E-49 | -1.69E-46 |
| MS.gene056680 | MS.gene072625 | 0.802577 | 5.25E-49 | -1.69E-46 |
| MS.gene056680 | MS.gene072626 | 0.807299 | 5.41E-50 | -1.69E-46 |
| MS.gene056680 | MS.gene072628 | 0.813989 | 1.94E-51 | -1.69E-46 |
| MS.gene056680 | MS.gene072629 | 0.807057 | 6.09E-50 | -1.69E-46 |
| MS.gene056680 | MS.gene073870 | 0.823626 | 1.25E-53 | -1.69E-46 |
| MS.gene056680 | MS.gene074299 | 0.820077 | 8.30E-53 | -1.69E-46 |
| MS.gene056680 | MS.gene07905 | 0.810407 | 1.17E-50 | -1.69E-46 |
| MS.gene056680 | MS.gene08883 | 0.836115 | 1.13E-56 | -1.69E-46 |
| MS.gene056680 | MS.gene09920 | 0.804544 | 2.05E-49 | -1.69E-46 |
| MS.gene056680 | MS.gene20639 | 0.812725 | 3.67E-51 | -1.69E-46 |
| MS.gene056680 | MS.gene22951 | 0.816628 | 5.01E-52 | -1.69E-46 |
| MS.gene056680 | MS.gene23026 | 0.819442 | 1.16E-52 | -1.69E-46 |
| MS.gene056680 | MS.gene23436 | 0.826399 | 2.77E-54 | -1.69E-46 |
| MS.gene056680 | MS.gene23507 | 0.807713 | 4.42E-50 | -1.69E-46 |
| MS.gene056680 | MS.gene23957 | 0.817172 | 3.78E-52 | -1.69E-46 |
| MS.gene056680 | MS.gene24107 | 0.814519 | 1.48E-51 | -1.69E-46 |
| MS.gene056680 | MS.gene24108 | 0.800481 | 1.41E-48 | -1.69E-46 |
| MS.gene056680 | MS.gene24659 | 0.809682 | 1.68E-50 | -1.69E-46 |
| MS.gene056680 | MS.gene25138 | 0.811213 | 7.84E-51 | -1.69E-46 |
| MS.gene056680 | MS.gene25652 | 0.822 | 2.99E-53 | -1.69E-46 |
| MS.gene056680 | MS.gene26289 | 0.800862 | 1.18E-48 | -1.69E-46 |
| MS.gene056680 | MS.gene26294 | 0.811922 | 5.49E-51 | -1.69E-46 |
| MS.gene056680 | MS.gene26296 | 0.807378 | 5.20E-50 | -1.69E-46 |
| MS.gene056680 | MS.gene27961 | 0.813238 | 2.83E-51 | -1.69E-46 |
| MS.gene056680 | MS.gene28548 | 0.85072 | 1.42E-60 | -1.69E-46 |
| MS.gene056680 | MS.gene28619 | 0.82258 | 2.20E-53 | -1.69E-46 |
| MS.gene056680 | MS.gene30382 | 0.832001 | 1.21E-55 | -1.69E-46 |
| MS.gene056680 | MS.gene30666 | 0.82873 | 7.64E-55 | -1.69E-46 |
| MS.gene056680 | MS.gene31836 | 0.801741 | 7.80E-49 | -1.69E-46 |
| MS.gene056680 | MS.gene33046 | 0.802972 | 4.35E-49 | -1.69E-46 |
| MS.gene056680 | MS.gene35460 | 0.803789 | 2.95E-49 | -1.69E-46 |
| MS.gene056680 | MS.gene35741 | 0.819852 | 9.34E-53 | -1.69E-46 |
| MS.gene056680 | MS.gene35951 | 0.847273 | 1.28E-59 | -1.69E-46 |
| MS.gene056680 | MS.gene37350 | 0.806232 | 9.09E-50 | -1.69E-46 |
| MS.gene056680 | MS.gene38435 | 0.802151 | 6.43E-49 | -1.69E-46 |
| MS.gene056680 | MS.gene40173 | 0.826034 | 3.39E-54 | -1.69E-46 |
| MS.gene056680 | MS.gene40846 | 0.83173 | 1.41E-55 | -1.69E-46 |
| MS.gene056680 | MS.gene42096 | 0.82494 | 6.15E-54 | -1.69E-46 |
| MS.gene056680 | MS.gene43162 | 0.801862 | 7.37E-49 | -1.69E-46 |
| MS.gene056680 | MS.gene44142 | 0.807803 | 4.23E-50 | -1.69E-46 |
| MS.gene056680 | MS.gene44712 | 0.82223 | 2.65E-53 | -1.69E-46 |
| MS.gene056680 | MS.gene44958 | 0.847763 | 9.42E-60 | -1.69E-46 |
| MS.gene056680 | MS.gene45230 | 0.803389 | 3.57E-49 | -1.69E-46 |
| MS.gene056680 | MS.gene45704 | 0.825098 | 5.64E-54 | -1.69E-46 |
| MS.gene056680 | MS.gene45706 | 0.911001 | 9.96E-83 | -1.69E-46 |
| MS.gene056680 | MS.gene45893 | 0.801163 | 1.03E-48 | -1.69E-46 |
| MS.gene056680 | MS.gene47719 | 0.818958 | 1.49E-52 | -1.69E-46 |
| MS.gene056680 | MS.gene47922 | 0.800315 | 1.53E-48 | -1.69E-46 |
| MS.gene056680 | MS.gene48023 | 0.801572 | 8.45E-49 | -1.69E-46 |
| MS.gene056680 | MS.gene48169 | 0.867769 | 1.07E-65 | -1.69E-46 |
| MS.gene056680 | MS.gene48885 | 0.853874 | 1.79E-61 | -1.69E-46 |
| MS.gene056680 | MS.gene50055 | 0.87863 | 2.40E-69 | -1.69E-46 |
| MS.gene056680 | MS.gene50057 | 0.842719 | 2.18E-58 | -1.69E-46 |
| MS.gene056680 | MS.gene50279 | 0.829904 | 3.96E-55 | -1.69E-46 |
| MS.gene056680 | MS.gene52797 | 0.831827 | 1.34E-55 | -1.69E-46 |
| MS.gene056680 | MS.gene54029 | 0.80558 | 1.25E-49 | -1.69E-46 |
| MS.gene056680 | MS.gene54346 | 0.806319 | 8.72E-50 | -1.69E-46 |
| MS.gene056680 | MS.gene54611 | 0.804483 | 2.11E-49 | -1.69E-46 |
| MS.gene056680 | MS.gene54667 | 0.811181 | 7.96E-51 | -1.69E-46 |
| MS.gene056680 | MS.gene55239 | 0.81084 | 9.44E-51 | -1.69E-46 |
| MS.gene056680 | MS.gene55964 | 0.810698 | 1.01E-50 | -1.69E-46 |
| MS.gene056680 | MS.gene57085 | 0.812242 | 4.68E-51 | -1.69E-46 |
| MS.gene056680 | MS.gene58786 | 0.859233 | 4.76E-63 | -1.69E-46 |
| MS.gene056680 | MS.gene59765 | 0.815808 | 7.65E-52 | -1.69E-46 |
| MS.gene056680 | MS.gene59920 | 0.837128 | 6.24E-57 | -1.69E-46 |
| MS.gene056680 | MS.gene60041 | 0.800822 | 1.20E-48 | -1.69E-46 |
| MS.gene056680 | MS.gene60913 | 0.834213 | 3.41E-56 | -1.69E-46 |
| MS.gene056680 | MS.gene61143 | 0.801529 | 8.63E-49 | -1.69E-46 |
| MS.gene056680 | MS.gene63913 | 0.821226 | 4.52E-53 | -1.69E-46 |
| MS.gene056680 | MS.gene64584 | 0.853691 | 2.02E-61 | -1.69E-46 |
| MS.gene056680 | MS.gene65144 | 0.844892 | 5.70E-59 | -1.69E-46 |
| MS.gene056680 | MS.gene65724 | 0.804968 | 1.67E-49 | -1.69E-46 |
| MS.gene056680 | MS.gene67371 | 0.828207 | 1.02E-54 | -1.69E-46 |
| MS.gene056680 | MS.gene69355 | 0.819498 | 1.13E-52 | -1.69E-46 |
| MS.gene056680 | MS.gene69863 | 0.805369 | 1.38E-49 | -1.69E-46 |
| MS.gene056680 | MS.gene69966 | 0.804171 | 2.46E-49 | -1.69E-46 |
| MS.gene056680 | MS.gene71342 | 0.801938 | 7.11E-49 | -1.69E-46 |
| MS.gene056680 | MS.gene71351 | 0.804391 | 2.21E-49 | -1.69E-46 |
| MS.gene056680 | MS.gene72499 | 0.825296 | 5.06E-54 | -1.69E-46 |
| MS.gene056680 | MS.gene72940 | 0.832779 | 7.78E-56 | -1.69E-46 |
| MS.gene056680 | MS.gene73510 | 0.815113 | 1.09E-51 | -1.69E-46 |
| MS.gene056680 | MS.gene73512 | 0.828985 | 6.63E-55 | -1.69E-46 |
| MS.gene056680 | MS.gene73993 | 0.823205 | 1.57E-53 | -1.69E-46 |
| MS.gene056680 | MS.gene73995 | 0.842252 | 2.90E-58 | -1.69E-46 |
| MS.gene056680 | MS.gene74384 | 0.816366 | 5.74E-52 | -1.69E-46 |
| MS.gene056680 | MS.gene75460 | 0.837173 | 6.07E-57 | -1.69E-46 |
| MS.gene056680 | MS.gene76595 | 0.842935 | 1.91E-58 | -1.69E-46 |
| MS.gene056680 | MS.gene76737 | 0.80381 | 2.92E-49 | -1.69E-46 |
| MS.gene056680 | MS.gene77325 | 0.842678 | 2.23E-58 | -1.69E-46 |
| MS.gene056680 | MS.gene77720 | 0.814727 | 1.33E-51 | -1.69E-46 |
| MS.gene056680 | MS.gene78618 | 0.841925 | 3.53E-58 | -1.69E-46 |
| MS.gene056680 | MS.gene78663 | 0.866566 | 2.60E-65 | -1.69E-46 |
| MS.gene056680 | MS.gene79232 | 0.845057 | 5.15E-59 | -1.69E-46 |
| MS.gene056680 | MS.gene80293 | 0.844089 | 9.38E-59 | -1.69E-46 |
| MS.gene056680 | MS.gene80744 | 0.819615 | 1.06E-52 | -1.69E-46 |
| MS.gene056680 | MS.gene81350 | 0.821571 | 3.76E-53 | -1.69E-46 |
| MS.gene056680 | MS.gene81770 | 0.822229 | 2.65E-53 | -1.69E-46 |
| MS.gene056680 | MS.gene81774 | 0.837473 | 5.09E-57 | -1.69E-46 |
| MS.gene056680 | MS.gene84143 | 0.854215 | 1.43E-61 | -1.69E-46 |
| MS.gene056680 | MS.gene84222 | 0.834281 | 3.28E-56 | -1.69E-46 |
| MS.gene056680 | MS.gene85260 | 0.816738 | 4.74E-52 | -1.69E-46 |
| MS.gene056680 | MS.gene85750 | 0.855917 | 4.57E-62 | -1.69E-46 |
| MS.gene056680 | MS.gene86387 | 0.817843 | 2.67E-52 | -1.69E-46 |
| MS.gene056680 | MS.gene87043 | 0.830244 | 3.28E-55 | -1.69E-46 |
| MS.gene056680 | MS.gene87222 | 0.803837 | 2.88E-49 | -1.69E-46 |
| MS.gene056680 | MS.gene87346 | 0.832615 | 8.54E-56 | -1.69E-46 |
| MS.gene056680 | MS.gene88365 | 0.843996 | 9.94E-59 | -1.69E-46 |
| MS.gene056680 | MS.gene88366 | 0.800004 | 1.77E-48 | -1.69E-46 |
| MS.gene056680 | MS.gene88597 | 0.801408 | 9.13E-49 | -1.69E-46 |
| MS.gene056680 | MS.gene89031 | 0.807414 | 5.12E-50 | -1.69E-46 |
| MS.gene056680 | MS.gene90407 | 0.821614 | 3.68E-53 | -1.69E-46 |
| MS.gene056680 | MS.gene90814 | 0.826357 | 2.84E-54 | -1.69E-46 |
| MS.gene056680 | MS.gene91221 | 0.803958 | 2.72E-49 | -1.69E-46 |
| MS.gene056680 | MS.gene91226 | 0.807252 | 5.54E-50 | -1.69E-46 |
| MS.gene056680 | MS.gene91537 | 0.821597 | 3.71E-53 | -1.69E-46 |
| MS.gene056680 | MS.gene91754 | 0.820402 | 6.99E-53 | -1.69E-46 |
| MS.gene056680 | MS.gene91955 | 0.825746 | 3.96E-54 | -1.69E-46 |
| MS.gene056680 | MS.gene92236 | 0.826618 | 2.46E-54 | -1.69E-46 |
| MS.gene056680 | MS.gene95804 | 0.813945 | 1.98E-51 | -1.69E-46 |
| MS.gene056680 | MS.gene96749 | 0.848075 | 7.72E-60 | -1.69E-46 |
| MS.gene056680 | MS.gene97024 | 0.814843 | 1.25E-51 | -1.69E-46 |
| MS.gene056680 | MS.gene97182 | 0.848519 | 5.82E-60 | -1.69E-46 |
| MS.gene056680 | MS.gene97258 | 0.801983 | 6.96E-49 | -1.69E-46 |
| MS.gene056680 | MS.gene97335 | 0.824925 | 6.20E-54 | -1.69E-46 |
| MS.gene056680 | MS.gene97354 | 0.802593 | 5.21E-49 | -1.69E-46 |
| MS.gene056680 | MS.gene97561 | 0.821986 | 3.02E-53 | -1.69E-46 |
| MS.gene056680 | MS.gene97790 | 0.814594 | 1.42E-51 | -1.69E-46 |
| MS.gene056680 | MS.gene98466 | 0.837599 | 4.73E-57 | -1.69E-46 |
| MS.gene056680 | MS.gene98470 | 0.84906 | 4.12E-60 | -1.69E-46 |
| MS.gene056680 | MS.gene98474 | 0.807307 | 5.39E-50 | -1.69E-46 |
| MS.gene056680 | MS.gene99062 | 0.827509 | 1.50E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056680.t1 | MTR_4g069300 | 91.781 | 438 | 36 | 0 | 1 | 438 | 1 | 438 | 0.0 | 823 |
| MS.gene056680.t1 | MTR_4g069260 | 84.475 | 438 | 67 | 1 | 1 | 438 | 1 | 437 | 0.0 | 783 |
| MS.gene056680.t1 | MTR_4g069350 | 84.862 | 436 | 59 | 1 | 1 | 436 | 1 | 429 | 0.0 | 760 |
| MS.gene056680.t1 | MTR_4g069430 | 82.798 | 436 | 59 | 2 | 1 | 436 | 1 | 420 | 0.0 | 728 |
| MS.gene056680.t1 | MTR_4g069420 | 80.275 | 436 | 77 | 1 | 1 | 436 | 1 | 427 | 0.0 | 704 |
| MS.gene056680.t1 | MTR_4g069390 | 83.473 | 357 | 54 | 1 | 80 | 436 | 1 | 352 | 0.0 | 622 |
| MS.gene056680.t1 | MTR_1g022025 | 68.837 | 430 | 127 | 3 | 7 | 436 | 5 | 427 | 0.0 | 619 |
| MS.gene056680.t1 | MTR_4g069280 | 87.879 | 66 | 8 | 0 | 1 | 66 | 1 | 66 | 8.43e-35 | 125 |
| MS.gene056680.t1 | MTR_4g069410 | 86.364 | 66 | 9 | 0 | 1 | 66 | 1 | 66 | 5.35e-34 | 123 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056680.t1 | AT1G19360 | 68.384 | 427 | 130 | 4 | 13 | 437 | 5 | 428 | 0.0 | 602 |
| MS.gene056680.t1 | AT1G19360 | 68.384 | 427 | 130 | 4 | 13 | 437 | 5 | 428 | 0.0 | 602 |
| MS.gene056680.t1 | AT1G75110 | 67.381 | 420 | 136 | 1 | 17 | 436 | 9 | 427 | 0.0 | 597 |
| MS.gene056680.t1 | AT1G75120 | 61.985 | 413 | 131 | 4 | 24 | 436 | 16 | 402 | 0.0 | 523 |
Find 95 sgRNAs with CRISPR-Local
Find 269 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATTCCTTCAATTGAGCTTT+TGG | 0.172013 | 4.3:+36052984 | MS.gene056680:CDS |
| AGGATATGGGTTTACAATTC+TGG | 0.249487 | 4.3:+36052940 | MS.gene056680:CDS |
| TTCATTCGCCGAAGCTTATC+AGG | 0.266822 | 4.3:-36053228 | None:intergenic |
| CATAATAACATGACAGCTTA+TGG | 0.285401 | 4.3:+36052859 | MS.gene056680:CDS |
| GGAGGGAGAGCAGCTGTCTC+TGG | 0.299812 | 4.3:+36052700 | MS.gene056680:CDS |
| GTAATCATTGGAGTTCTTAC+TGG | 0.301834 | 4.3:+36048789 | MS.gene056680:CDS |
| TAGTTCATACCACGAGGATA+TGG | 0.304296 | 4.3:+36052926 | MS.gene056680:CDS |
| AAGGCAACAACTAGATAATT+AGG | 0.329864 | 4.3:-36052586 | None:intergenic |
| TCATGCTTCTAAAAGAACTA+TGG | 0.336021 | 4.3:+36053104 | MS.gene056680:CDS |
| AGCATGAAGCCCGTCATAAC+CGG | 0.354815 | 4.3:-36053088 | None:intergenic |
| GCTTCTTGCATTAGGTAAAC+AGG | 0.362356 | 4.3:+36052366 | MS.gene056680:CDS |
| TCTAATATATTTGCCAATCT+CGG | 0.386117 | 4.3:-36052463 | None:intergenic |
| TAATTCACGTGAATAATTAC+CGG | 0.389710 | 4.3:-36053201 | None:intergenic |
| TGAGAAACAAAGAATTCATT+AGG | 0.391068 | 4.3:-36048834 | None:intergenic |
| GTTGTTGATTATTATGTCAA+TGG | 0.405758 | 4.3:+36053255 | MS.gene056680:CDS |
| TATACCGACTCTCTTGATAT+TGG | 0.413611 | 4.3:-36052563 | None:intergenic |
| AAAGAGTTCTTCATTGAAAA+CGG | 0.417137 | 4.3:-36053052 | None:intergenic |
| AACAGTAGGATTGGTTCTTA+AGG | 0.420894 | 4.3:-36052419 | None:intergenic |
| GGTTACCACTTTGAGCCATC+AGG | 0.421929 | 4.3:-36053303 | None:intergenic |
| CTAATATATTTGCCAATCTC+GGG | 0.422456 | 4.3:-36052462 | None:intergenic |
| CCTTGCAAACTCCAATGTTA+AGG | 0.426563 | 4.3:+36052519 | MS.gene056680:CDS |
| ATCATTGCCGCTGTAATCAT+TGG | 0.429648 | 4.3:+36048777 | MS.gene056680:CDS |
| AATCGTCACCTACCTATTGC+TGG | 0.431274 | 4.3:+36048870 | MS.gene056680:CDS |
| TGAGTCTTGGGTCCAGCAAT+AGG | 0.439605 | 4.3:-36048882 | None:intergenic |
| CATGTTAAAATCAGAATTTG+TGG | 0.440337 | 4.3:+36052243 | MS.gene056680:CDS |
| CTCAATCTCTACTGATATCA+AGG | 0.441387 | 4.3:+36048754 | MS.gene056680:CDS |
| TTGTTGATTATTATGTCAAT+GGG | 0.453648 | 4.3:+36053256 | MS.gene056680:CDS |
| TTGGTCCCATGCTTTCTCCT+TGG | 0.456387 | 4.3:-36053028 | None:intergenic |
| CTCGGGTTCACGGATTCATC+AGG | 0.461693 | 4.3:-36052445 | None:intergenic |
| AGCTCAATTGAAGGAATGGT+TGG | 0.470800 | 4.3:-36052979 | None:intergenic |
| ACAGTATCAATACCATCATC+CGG | 0.475603 | 4.3:-36052667 | None:intergenic |
| AGTTCATACCACGAGGATAT+GGG | 0.478586 | 4.3:+36052927 | MS.gene056680:CDS |
| TGAATCCGTGAACCCGAGAT+TGG | 0.481653 | 4.3:+36052450 | MS.gene056680:CDS |
| AATAGGTAGGTGACGATTTG+AGG | 0.481988 | 4.3:-36048865 | None:intergenic |
| TTAAGGAGACCCTCGAGGTC+TGG | 0.486077 | 4.3:+36052536 | MS.gene056680:CDS |
| ATCAGGAGCAACAGTAGGAT+TGG | 0.486219 | 4.3:-36052428 | None:intergenic |
| CAAAAGCTCAATTGAAGGAA+TGG | 0.491186 | 4.3:-36052983 | None:intergenic |
| GGAAAGGTTTGAGAGCATCT+TGG | 0.491288 | 4.3:-36053281 | None:intergenic |
| CCGTCCCATCCCGGTTATGA+CGG | 0.491722 | 4.3:+36053078 | MS.gene056680:CDS |
| TACAAAAGAGACCCGGATGA+TGG | 0.496519 | 4.3:+36052655 | MS.gene056680:CDS |
| TATCTATGACGAACCTGTGA+TGG | 0.498138 | 4.3:+36052891 | MS.gene056680:CDS |
| GAAAATGAAACCTGAGTCTT+GGG | 0.499818 | 4.3:-36048894 | None:intergenic |
| CTTGATATCAGTAGAGATTG+AGG | 0.500376 | 4.3:-36048753 | None:intergenic |
| CACTTTGAGCCATCAGGGAA+AGG | 0.502373 | 4.3:-36053297 | None:intergenic |
| CGATCCAAAAGCTCAATTGA+AGG | 0.505035 | 4.3:-36052988 | None:intergenic |
| TCACGGTATAGATGATCAAA+AGG | 0.505121 | 4.3:-36052808 | None:intergenic |
| ATTTGCCAATCTCGGGTTCA+CGG | 0.510225 | 4.3:-36052455 | None:intergenic |
| TAACCTCGGTAAATTAAAAC+CGG | 0.514765 | 4.3:+36053182 | MS.gene056680:CDS |
| CTTTGAAATTTCCTCGTCGA+AGG | 0.515983 | 4.3:-36052605 | None:intergenic |
| CCTTAACATTGGAGTTTGCA+AGG | 0.516596 | 4.3:-36052519 | None:intergenic |
| GAGGGAGAGCAGCTGTCTCT+GGG | 0.517475 | 4.3:+36052701 | MS.gene056680:CDS |
| CGTCCCATCCCGGTTATGAC+GGG | 0.525047 | 4.3:+36053079 | MS.gene056680:CDS |
| GGCTTTCCAAGGAGAAAGCA+TGG | 0.525521 | 4.3:+36053022 | MS.gene056680:CDS |
| TGAGGGTTGTTCTTCATCAA+AGG | 0.532197 | 4.3:-36048735 | None:intergenic |
| TTGATATCAGTAGAGATTGA+GGG | 0.536003 | 4.3:-36048752 | None:intergenic |
| GTTCTTCATTGAAAACGGCT+TGG | 0.536649 | 4.3:-36053047 | None:intergenic |
| ATTACCATCCTGATAAGCTT+CGG | 0.537140 | 4.3:+36053220 | MS.gene056680:CDS |
| TGAAAATGAAACCTGAGTCT+TGG | 0.544330 | 4.3:-36048895 | None:intergenic |
| GTTATTATGACCATCACTCA+TGG | 0.547758 | 4.3:-36052845 | None:intergenic |
| AAGCCCGTCATAACCGGGAT+GGG | 0.548733 | 4.3:-36053082 | None:intergenic |
| CTTAACATTGGAGTTTGCAA+GGG | 0.559512 | 4.3:-36052518 | None:intergenic |
| GCTCTCAAACCTTTCCCTGA+TGG | 0.559523 | 4.3:+36053288 | MS.gene056680:CDS |
| GTTACCACTTTGAGCCATCA+GGG | 0.562119 | 4.3:-36053302 | None:intergenic |
| CTCGAGGGTCTCCTTAACAT+TGG | 0.565730 | 4.3:-36052530 | None:intergenic |
| GCATGAAGCCCGTCATAACC+GGG | 0.579502 | 4.3:-36053087 | None:intergenic |
| CCGTCATAACCGGGATGGGA+CGG | 0.584602 | 4.3:-36053078 | None:intergenic |
| GAAGCCCGTCATAACCGGGA+TGG | 0.590516 | 4.3:-36053083 | None:intergenic |
| AGCAGAGCAAGGAAAAGACC+AGG | 0.591506 | 4.3:+36052333 | MS.gene056680:CDS |
| TATTGCTGGACCCAAGACTC+AGG | 0.596949 | 4.3:+36048884 | MS.gene056680:CDS |
| AAGGCCTTGACAGTACCAAA+AGG | 0.598804 | 4.3:-36052400 | None:intergenic |
| AGGTGAGTGAGTTGACAGAA+AGG | 0.599718 | 4.3:+36052302 | MS.gene056680:CDS |
| AATCGAGACCAACCCATCAC+AGG | 0.602173 | 4.3:-36052904 | None:intergenic |
| TGTCGCGACAAGGCTTTCCA+AGG | 0.604324 | 4.3:+36053011 | MS.gene056680:CDS |
| ATGACGAACCTGTGATGGGT+TGG | 0.611315 | 4.3:+36052896 | MS.gene056680:CDS |
| AGGCTTCAGCTAGCAGAGCA+AGG | 0.611488 | 4.3:+36052322 | MS.gene056680:CDS |
| TTCGCCGAAGCTTATCAGGA+TGG | 0.615270 | 4.3:-36053224 | None:intergenic |
| CAGTATCAATACCATCATCC+GGG | 0.624695 | 4.3:-36052666 | None:intergenic |
| TCTTGGGTCCAGCAATAGGT+AGG | 0.625086 | 4.3:-36048878 | None:intergenic |
| GATTCATCAGGAGCAACAGT+AGG | 0.626788 | 4.3:-36052433 | None:intergenic |
| TTCACCAATATCAAGAGAGT+CGG | 0.631376 | 4.3:+36052559 | MS.gene056680:CDS |
| ATTGAGCGCAGAGAAAGAGA+AGG | 0.634348 | 4.3:+36048711 | MS.gene056680:CDS |
| ATCTATGACGAACCTGTGAT+GGG | 0.642865 | 4.3:+36052892 | MS.gene056680:CDS |
| GATGATGGTATTGATACTGT+TGG | 0.643432 | 4.3:+36052670 | MS.gene056680:CDS |
| GCTTTCCAAGGAGAAAGCAT+GGG | 0.644753 | 4.3:+36053023 | MS.gene056680:CDS |
| TGGACTCAACATCTGAATCA+CGG | 0.646362 | 4.3:-36052825 | None:intergenic |
| CTTTCCCTGATGGCTCAAAG+TGG | 0.648347 | 4.3:+36053298 | MS.gene056680:CDS |
| TATTGGTGAACCAGACCTCG+AGG | 0.661264 | 4.3:-36052546 | None:intergenic |
| CTCGATTAGTTCATACCACG+AGG | 0.662449 | 4.3:+36052920 | MS.gene056680:CDS |
| ATTGGTGAACCAGACCTCGA+GGG | 0.670776 | 4.3:-36052545 | None:intergenic |
| GTAAGGAATGATGCTAACCT+CGG | 0.675760 | 4.3:+36053168 | MS.gene056680:CDS |
| GATGTTGAGTCCATGAGTGA+TGG | 0.677753 | 4.3:+36052835 | MS.gene056680:CDS |
| TCTAGTTGTTGCCTTCGACG+AGG | 0.686292 | 4.3:+36052594 | MS.gene056680:CDS |
| AAGAACTCCAATGATTACAG+CGG | 0.714568 | 4.3:-36048784 | None:intergenic |
| CAATGTTAAGGAGACCCTCG+AGG | 0.715442 | 4.3:+36052531 | MS.gene056680:CDS |
| ATTGTAAACCCATATCCTCG+TGG | 0.729649 | 4.3:-36052935 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTTAAATTATTATTATAA+CGG | - | chr4.3:36050682-36050701 | None:intergenic | 0.0% |
| !! | TTAAATAATATTATAAAAAA+TGG | - | chr4.3:36051140-36051159 | None:intergenic | 0.0% |
| !!! | TTTTTTATTTTATTTTATTT+TGG | + | chr4.3:36052179-36052198 | MS.gene056680:intron | 0.0% |
| !! | TTGTATATAAAAAGATATAT+CGG | - | chr4.3:36050987-36051006 | None:intergenic | 10.0% |
| !! | TTGTTAATATAAAATTCAAA+TGG | - | chr4.3:36050291-36050310 | None:intergenic | 10.0% |
| !! | TTTAAGCATATTTAATTAAT+TGG | + | chr4.3:36049157-36049176 | MS.gene056680:intron | 10.0% |
| !!! | AACTTTAAAATAAATAATTG+TGG | + | chr4.3:36051894-36051913 | MS.gene056680:intron | 10.0% |
| !!! | AGTATTTTAATTAAAGTAAA+AGG | - | chr4.3:36050548-36050567 | None:intergenic | 10.0% |
| !!! | AGTTTTTATATAAAGTAAAA+GGG | - | chr4.3:36050581-36050600 | None:intergenic | 10.0% |
| !!! | CTTATTTTAAAATAAAGTAA+AGG | - | chr4.3:36050652-36050671 | None:intergenic | 10.0% |
| !!! | TAAAGATATTATATGATTTT+TGG | - | chr4.3:36049650-36049669 | None:intergenic | 10.0% |
| !!! | TTATTTCTTATAAATAGTAT+CGG | + | chr4.3:36050940-36050959 | MS.gene056680:intron | 10.0% |
| !!! | TTCAAATTTGTAATTTTATA+AGG | + | chr4.3:36051782-36051801 | MS.gene056680:intron | 10.0% |
| !!! | TTGATTTTAATTAAAATTGT+AGG | + | chr4.3:36049471-36049490 | MS.gene056680:intron | 10.0% |
| !! | ATAGGTAATTTATCTATAAT+TGG | - | chr4.3:36051637-36051656 | None:intergenic | 15.0% |
| !! | ATGAGTTGTTTATTATAAAT+AGG | - | chr4.3:36050836-36050855 | None:intergenic | 15.0% |
| !! | CATATAATTCAATAAAAAAG+TGG | - | chr4.3:36049288-36049307 | None:intergenic | 15.0% |
| !! | TATTATAAAAAATGGCAAAA+TGG | - | chr4.3:36051132-36051151 | None:intergenic | 15.0% |
| !! | TTGGAAAATAAATTGTAATA+AGG | + | chr4.3:36051720-36051739 | MS.gene056680:intron | 15.0% |
| !!! | ATGATATTTTAATTGGAAAA+GGG | + | chr4.3:36051684-36051703 | MS.gene056680:intron | 15.0% |
| !!! | CATTAAATAATTGATTTATC+TGG | + | chr4.3:36050866-36050885 | MS.gene056680:intron | 15.0% |
| !!! | GAGTTTTTATATAAAGTAAA+AGG | - | chr4.3:36050582-36050601 | None:intergenic | 15.0% |
| !!! | TAGTTTAAAACCATTAATAT+AGG | + | chr4.3:36050715-36050734 | MS.gene056680:intron | 15.0% |
| !!! | TTATTTTATTTTATTTTGGC+AGG | + | chr4.3:36052183-36052202 | MS.gene056680:intron | 15.0% |
| !!! | TTTAAAAACTCAAGTTTTTA+CGG | + | chr4.3:36050419-36050438 | MS.gene056680:intron | 15.0% |
| !! | AAATTTAGTGCAACATATAA+AGG | + | chr4.3:36051658-36051677 | MS.gene056680:intron | 20.0% |
| !! | AATTTAGTGCAACATATAAA+GGG | + | chr4.3:36051659-36051678 | MS.gene056680:intron | 20.0% |
| !! | CACAAAAATAGGAATAAAAT+TGG | + | chr4.3:36051229-36051248 | MS.gene056680:intron | 20.0% |
| !! | CATGTGATAATTAATTCATT+TGG | - | chr4.3:36050371-36050390 | None:intergenic | 20.0% |
| !! | GTAAAAAGTAATTAAGTCTA+GGG | - | chr4.3:36051334-36051353 | None:intergenic | 20.0% |
| !! | TATATTATATGCTATATCGT+TGG | - | chr4.3:36049541-36049560 | None:intergenic | 20.0% |
| !! | TTGTTTATTATAAATAGGAC+CGG | - | chr4.3:36050831-36050850 | None:intergenic | 20.0% |
| !!! | AAAGGGAATGATATTTTAAT+TGG | + | chr4.3:36051701-36051720 | MS.gene056680:intron | 20.0% |
| !!! | AACTATACTTATCTTTTTCA+AGG | + | chr4.3:36049512-36049531 | MS.gene056680:intron | 20.0% |
| !!! | AATTTGAAGTTAGAGAATTT+CGG | - | chr4.3:36051770-36051789 | None:intergenic | 20.0% |
| !!! | AGTTTGTTTAAGGATATAAT+CGG | + | chr4.3:36049609-36049628 | MS.gene056680:intron | 20.0% |
| !!! | ATAAAAAGATATATCGGTTT+TGG | - | chr4.3:36050981-36051000 | None:intergenic | 20.0% |
| !!! | ATGTGACATATTTTAAAAGA+TGG | + | chr4.3:36050317-36050336 | MS.gene056680:intron | 20.0% |
| !!! | GATGATATTTTAATTGGAAA+AGG | + | chr4.3:36051683-36051702 | MS.gene056680:intron | 20.0% |
| !!! | TGAAGAAAGGTATTATAAAA+TGG | - | chr4.3:36051986-36052005 | None:intergenic | 20.0% |
| !!! | TTAAAAACTCAAGTTTTTAC+GGG | + | chr4.3:36050420-36050439 | MS.gene056680:intron | 20.0% |
| !!! | TTCATATTTTTACTCATTCA+CGG | + | chr4.3:36050237-36050256 | MS.gene056680:intron | 20.0% |
| !!! | TTGTTGATTATTATGTCAAT+GGG | + | chr4.3:36053256-36053275 | MS.gene056680:CDS | 20.0% |
| ! | AAAGAGTTCTTCATTGAAAA+CGG | - | chr4.3:36053055-36053074 | None:intergenic | 25.0% |
| ! | AATGAACAATGCACAAAAAT+AGG | + | chr4.3:36051218-36051237 | MS.gene056680:intron | 25.0% |
| ! | ATTGATACTGTTGGAAAAAA+AGG | + | chr4.3:36052679-36052698 | MS.gene056680:CDS | 25.0% |
| ! | CAAGAAAGATAGTTAATCTT+TGG | - | chr4.3:36048921-36048940 | None:intergenic | 25.0% |
| ! | CATGTTAAAATCAGAATTTG+TGG | + | chr4.3:36052243-36052262 | MS.gene056680:CDS | 25.0% |
| ! | CATTGAATAATTGATGTATC+TGG | - | chr4.3:36050905-36050924 | None:intergenic | 25.0% |
| ! | GCAGTAGAAAATCAAATAAA+CGG | + | chr4.3:36051013-36051032 | MS.gene056680:intron | 25.0% |
| ! | GGGTAAAATTGAAAGAAAAA+TGG | - | chr4.3:36051314-36051333 | None:intergenic | 25.0% |
| ! | GGTAAAAAGTAATTAAGTCT+AGG | - | chr4.3:36051335-36051354 | None:intergenic | 25.0% |
| ! | GGTAATTTATCTATAATTGG+TGG | - | chr4.3:36051634-36051653 | None:intergenic | 25.0% |
| ! | TAATTCACGTGAATAATTAC+CGG | - | chr4.3:36053204-36053223 | None:intergenic | 25.0% |
| ! | TATGTTGCACTAAATTTGAT+AGG | - | chr4.3:36051655-36051674 | None:intergenic | 25.0% |
| ! | TCAATAAAAAAGTGGACAAA+CGG | - | chr4.3:36049280-36049299 | None:intergenic | 25.0% |
| ! | TCTAATATATTTGCCAATCT+CGG | - | chr4.3:36052466-36052485 | None:intergenic | 25.0% |
| ! | TGAGAAACAAAGAATTCATT+AGG | - | chr4.3:36048837-36048856 | None:intergenic | 25.0% |
| ! | TGAGAAACTAATAAGTCATT+GGG | - | chr4.3:36052155-36052174 | None:intergenic | 25.0% |
| ! | TGGATAATCCAAATTCTATT+GGG | + | chr4.3:36049177-36049196 | MS.gene056680:intron | 25.0% |
| ! | TTAAGACATGCACATTAAAA+TGG | - | chr4.3:36051356-36051375 | None:intergenic | 25.0% |
| ! | TTGACGGTTCATATATTAAT+GGG | - | chr4.3:36051189-36051208 | None:intergenic | 25.0% |
| ! | TTGAGAAACTAATAAGTCAT+TGG | - | chr4.3:36052156-36052175 | None:intergenic | 25.0% |
| ! | TTGGATAATCCAAATTCTAT+TGG | + | chr4.3:36049176-36049195 | MS.gene056680:intron | 25.0% |
| ! | TTTACTTTACTACATGATGT+GGG | + | chr4.3:36049084-36049103 | MS.gene056680:intron | 25.0% |
| !! | GTTGTTGATTATTATGTCAA+TGG | + | chr4.3:36053255-36053274 | MS.gene056680:CDS | 25.0% |
| !! | TTCTTATAAATAGTATCGGA+AGG | + | chr4.3:36050944-36050963 | MS.gene056680:intron | 25.0% |
| !! | TTTTACTTTACTACATGATG+TGG | + | chr4.3:36049083-36049102 | MS.gene056680:intron | 25.0% |
| !!! | AAATGGATTACTATGAGAAA+TGG | - | chr4.3:36050274-36050293 | None:intergenic | 25.0% |
| !!! | AAGGGAGATGATATTTTAAT+TGG | + | chr4.3:36051677-36051696 | MS.gene056680:intron | 25.0% |
| !!! | AATGGATTACTATGAGAAAT+GGG | - | chr4.3:36050273-36050292 | None:intergenic | 25.0% |
| !!! | ATATACTGTTTCTATTGTAG+TGG | - | chr4.3:36050748-36050767 | None:intergenic | 25.0% |
| !!! | ATCTTGATAATGATGAAGAA+AGG | - | chr4.3:36051999-36052018 | None:intergenic | 25.0% |
| !!! | GAAAGTTGGTAATACTATTA+TGG | - | chr4.3:36049246-36049265 | None:intergenic | 25.0% |
| AAAGTACGGTAATAGAATCT+AGG | + | chr4.3:36049691-36049710 | MS.gene056680:intron | 30.0% | |
| AAATGAACAGCTGAAAAAAC+AGG | + | chr4.3:36052282-36052301 | MS.gene056680:CDS | 30.0% | |
| AACAAGCTAACTCAATTGTT+TGG | - | chr4.3:36050079-36050098 | None:intergenic | 30.0% | |
| AAGGCAACAACTAGATAATT+AGG | - | chr4.3:36052589-36052608 | None:intergenic | 30.0% | |
| AATGCCAGTAGTATATTGTA+AGG | + | chr4.3:36051374-36051393 | MS.gene056680:intron | 30.0% | |
| ATACTGTTGGAAAAAAAGGA+GGG | + | chr4.3:36052683-36052702 | MS.gene056680:CDS | 30.0% | |
| ATCTATAATTGGTGGAAAGA+TGG | - | chr4.3:36051626-36051645 | None:intergenic | 30.0% | |
| ATGATTCACCCAATAGAATT+TGG | - | chr4.3:36049188-36049207 | None:intergenic | 30.0% | |
| ATGCCAGTAGTATATTGTAA+GGG | + | chr4.3:36051375-36051394 | MS.gene056680:intron | 30.0% | |
| CAAGTTAATGTTCATCCTTA+CGG | + | chr4.3:36051038-36051057 | MS.gene056680:intron | 30.0% | |
| CAATGTTGTTCTTATTGTTG+CGG | - | chr4.3:36051474-36051493 | None:intergenic | 30.0% | |
| CAGTTGTTTAAGGATATGAT+CGG | + | chr4.3:36049980-36049999 | MS.gene056680:intron | 30.0% | |
| CATAATAACATGACAGCTTA+TGG | + | chr4.3:36052859-36052878 | MS.gene056680:CDS | 30.0% | |
| CATTATCAAGATTATGTGAG+AGG | + | chr4.3:36052007-36052026 | MS.gene056680:intron | 30.0% | |
| CTAATATATTTGCCAATCTC+GGG | - | chr4.3:36052465-36052484 | None:intergenic | 30.0% | |
| GAAAAAATGCTTCTTGCATT+AGG | + | chr4.3:36052358-36052377 | MS.gene056680:CDS | 30.0% | |
| GAGAAACTAATAAGTCATTG+GGG | - | chr4.3:36052154-36052173 | None:intergenic | 30.0% | |
| GATTTAGACTGTTTATCTGA+TGG | + | chr4.3:36049713-36049732 | MS.gene056680:intron | 30.0% | |
| GTTGACGGTTCATATATTAA+TGG | - | chr4.3:36051190-36051209 | None:intergenic | 30.0% | |
| TAACCTCGGTAAATTAAAAC+CGG | + | chr4.3:36053182-36053201 | MS.gene056680:CDS | 30.0% | |
| TAACTCAATCAAAGTCGTAA+TGG | + | chr4.3:36052034-36052053 | MS.gene056680:intron | 30.0% | |
| TACTTAGGCAGTAAGTAATA+GGG | + | chr4.3:36049792-36049811 | MS.gene056680:intron | 30.0% | |
| TCAACAAATAGCATTCGTAT+AGG | + | chr4.3:36049584-36049603 | MS.gene056680:intron | 30.0% | |
| TCGAAAATCAGAGTTCTTAT+AGG | + | chr4.3:36052105-36052124 | MS.gene056680:intron | 30.0% | |
| TGACGGTTCATATATTAATG+GGG | - | chr4.3:36051188-36051207 | None:intergenic | 30.0% | |
| TGATCGGAAGTAAAAAAACT+CGG | + | chr4.3:36049996-36050015 | MS.gene056680:intron | 30.0% | |
| TGGCAAAATGGTTTAAATGA+AGG | - | chr4.3:36051120-36051139 | None:intergenic | 30.0% | |
| TTACTTAGGCAGTAAGTAAT+AGG | + | chr4.3:36049791-36049810 | MS.gene056680:intron | 30.0% | |
| TTATTATAAATAGGACCGGA+GGG | - | chr4.3:36050827-36050846 | None:intergenic | 30.0% | |
| TTGATATCAGTAGAGATTGA+GGG | - | chr4.3:36048755-36048774 | None:intergenic | 30.0% | |
| TTGTTGTACTTGCAAAAGTA+CGG | + | chr4.3:36049677-36049696 | MS.gene056680:intron | 30.0% | |
| TTTATTATAAATAGGACCGG+AGG | - | chr4.3:36050828-36050847 | None:intergenic | 30.0% | |
| ! | CTAAGAGAATTTTTGCAGTT+GGG | + | chr4.3:36052739-36052758 | MS.gene056680:CDS | 30.0% |
| ! | GGGGTATGATAAAATCTTTT+TGG | - | chr4.3:36050806-36050825 | None:intergenic | 30.0% |
| ! | GTTCATTTCATTGTTGTTGA+CGG | - | chr4.3:36051205-36051224 | None:intergenic | 30.0% |
| ! | TCATGCTTCTAAAAGAACTA+TGG | + | chr4.3:36053104-36053123 | MS.gene056680:CDS | 30.0% |
| ! | TCTAAGAGAATTTTTGCAGT+TGG | + | chr4.3:36052738-36052757 | MS.gene056680:CDS | 30.0% |
| ! | TTTTTACTCATTCACGGAAT+TGG | + | chr4.3:36050243-36050262 | MS.gene056680:intron | 30.0% |
| !! | AAGTTCTTTTCAAGACAGTA+AGG | + | chr4.3:36053151-36053170 | MS.gene056680:CDS | 30.0% |
| !! | TTACGGTAGTAGCTTTAAAT+GGG | + | chr4.3:36051055-36051074 | MS.gene056680:intron | 30.0% |
| !!! | AACTCTGATTTTCGAGTTAT+GGG | - | chr4.3:36052100-36052119 | None:intergenic | 30.0% |
| AACACAAAATTCTGCCCAAA+AGG | - | chr4.3:36051087-36051106 | None:intergenic | 35.0% | |
| AAGAACTCCAATGATTACAG+CGG | - | chr4.3:36048787-36048806 | None:intergenic | 35.0% | |
| ACACAAAATTCTGCCCAAAA+GGG | - | chr4.3:36051086-36051105 | None:intergenic | 35.0% | |
| ACAGTATCAATACCATCATC+CGG | - | chr4.3:36052670-36052689 | None:intergenic | 35.0% | |
| ACTTAGGCAGTAAGTAATAG+GGG | + | chr4.3:36049793-36049812 | MS.gene056680:intron | 35.0% | |
| AGGATATGGGTTTACAATTC+TGG | + | chr4.3:36052940-36052959 | MS.gene056680:CDS | 35.0% | |
| ATTACCATCCTGATAAGCTT+CGG | + | chr4.3:36053220-36053239 | MS.gene056680:CDS | 35.0% | |
| ATTCCTAAAAGACCTCTGAA+AGG | - | chr4.3:36049948-36049967 | None:intergenic | 35.0% | |
| ATTGACAGTCCAGTTGTTTA+AGG | + | chr4.3:36049970-36049989 | MS.gene056680:intron | 35.0% | |
| CAAAAGCTCAATTGAAGGAA+TGG | - | chr4.3:36052986-36053005 | None:intergenic | 35.0% | |
| CGATCATATCCTTAAACAAC+TGG | - | chr4.3:36049982-36050001 | None:intergenic | 35.0% | |
| CGCAACAATAAGAACAACAT+TGG | + | chr4.3:36051472-36051491 | MS.gene056680:intron | 35.0% | |
| CTCAATCTCTACTGATATCA+AGG | + | chr4.3:36048754-36048773 | MS.gene056680:CDS | 35.0% | |
| CTTAACATTGGAGTTTGCAA+GGG | - | chr4.3:36052521-36052540 | None:intergenic | 35.0% | |
| CTTGATATCAGTAGAGATTG+AGG | - | chr4.3:36048756-36048775 | None:intergenic | 35.0% | |
| GAAAATGAAACCTGAGTCTT+GGG | - | chr4.3:36048897-36048916 | None:intergenic | 35.0% | |
| GATACTGTTGGAAAAAAAGG+AGG | + | chr4.3:36052682-36052701 | MS.gene056680:CDS | 35.0% | |
| GTAATCATTGGAGTTCTTAC+TGG | + | chr4.3:36048789-36048808 | MS.gene056680:CDS | 35.0% | |
| GTTATTATGACCATCACTCA+TGG | - | chr4.3:36052848-36052867 | None:intergenic | 35.0% | |
| TATTATAAATAGGACCGGAG+GGG | - | chr4.3:36050826-36050845 | None:intergenic | 35.0% | |
| TCACGGTATAGATGATCAAA+AGG | - | chr4.3:36052811-36052830 | None:intergenic | 35.0% | |
| TGAAAATGAAACCTGAGTCT+TGG | - | chr4.3:36048898-36048917 | None:intergenic | 35.0% | |
| TGCCAGTAGTATATTGTAAG+GGG | + | chr4.3:36051376-36051395 | MS.gene056680:intron | 35.0% | |
| TGGTGCTCTTCCTATATTAA+TGG | - | chr4.3:36050728-36050747 | None:intergenic | 35.0% | |
| TTAGGTAAACAGGAAAAAGC+TGG | + | chr4.3:36052376-36052395 | MS.gene056680:CDS | 35.0% | |
| TTCACCAATATCAAGAGAGT+CGG | + | chr4.3:36052559-36052578 | MS.gene056680:CDS | 35.0% | |
| ! | CACCAAATGACGAATCTTTT+GGG | + | chr4.3:36050108-36050127 | MS.gene056680:intron | 35.0% |
| ! | CATTCCTTCAATTGAGCTTT+TGG | + | chr4.3:36052984-36053003 | MS.gene056680:CDS | 35.0% |
| ! | CATTTAAAGCTACTACCGTA+AGG | - | chr4.3:36051056-36051075 | None:intergenic | 35.0% |
| ! | CGTATAGGCAAGTTTGTTTA+AGG | + | chr4.3:36049599-36049618 | MS.gene056680:intron | 35.0% |
| ! | TTCCTAAAAGACCTCTGAAA+GGG | - | chr4.3:36049947-36049966 | None:intergenic | 35.0% |
| !! | AACAGTAGGATTGGTTCTTA+AGG | - | chr4.3:36052422-36052441 | None:intergenic | 35.0% |
| !! | CTTACGGTAGTAGCTTTAAA+TGG | + | chr4.3:36051054-36051073 | MS.gene056680:intron | 35.0% |
| !! | GATGATGGTATTGATACTGT+TGG | + | chr4.3:36052670-36052689 | MS.gene056680:CDS | 35.0% |
| !! | GCGGATTGTTTCTATTTCAA+TGG | - | chr4.3:36051455-36051474 | None:intergenic | 35.0% |
| !! | TATACCGACTCTCTTGATAT+TGG | - | chr4.3:36052566-36052585 | None:intergenic | 35.0% |
| !!! | ACTCTGATTTTCGAGTTATG+GGG | - | chr4.3:36052099-36052118 | None:intergenic | 35.0% |
| !!! | AGTAAGTAATAGGGGTGTTT+TGG | + | chr4.3:36049801-36049820 | MS.gene056680:intron | 35.0% |
| !!! | GAACTCTGATTTTCGAGTTA+TGG | - | chr4.3:36052101-36052120 | None:intergenic | 35.0% |
| !!! | GAATCTTTTGGGACAAACTT+TGG | + | chr4.3:36050119-36050138 | MS.gene056680:intron | 35.0% |
| !!! | GTAAGTAATAGGGGTGTTTT+GGG | + | chr4.3:36049802-36049821 | MS.gene056680:intron | 35.0% |
| !!! | GTTATGGGGTTTTGAAGATT+TGG | - | chr4.3:36052085-36052104 | None:intergenic | 35.0% |
| !!! | TTACCGGTTTTAATTTACCG+AGG | - | chr4.3:36053188-36053207 | None:intergenic | 35.0% |
| AAAAAGTGGACAAACGGACA+CGG | - | chr4.3:36049274-36049293 | None:intergenic | 40.0% | |
| AATAGGTAGGTGACGATTTG+AGG | - | chr4.3:36048868-36048887 | None:intergenic | 40.0% | |
| ACCCCCTTACAATATACTAC+TGG | - | chr4.3:36051381-36051400 | None:intergenic | 40.0% | |
| AGCTCAATTGAAGGAATGGT+TGG | - | chr4.3:36052982-36053001 | None:intergenic | 40.0% | |
| AGTTCATACCACGAGGATAT+GGG | + | chr4.3:36052927-36052946 | MS.gene056680:CDS | 40.0% | |
| ATCATTGCCGCTGTAATCAT+TGG | + | chr4.3:36048777-36048796 | MS.gene056680:CDS | 40.0% | |
| ATCTATGACGAACCTGTGAT+GGG | + | chr4.3:36052892-36052911 | MS.gene056680:CDS | 40.0% | |
| ATTATAAATAGGACCGGAGG+GGG | - | chr4.3:36050825-36050844 | None:intergenic | 40.0% | |
| ATTGTAAACCCATATCCTCG+TGG | - | chr4.3:36052938-36052957 | None:intergenic | 40.0% | |
| CAGTATCAATACCATCATCC+GGG | - | chr4.3:36052669-36052688 | None:intergenic | 40.0% | |
| CCAAAAGATTCGTCATTTGG+TGG | - | chr4.3:36050110-36050129 | None:intergenic | 40.0% | |
| CCTTAACATTGGAGTTTGCA+AGG | - | chr4.3:36052522-36052541 | None:intergenic | 40.0% | |
| CCTTGCAAACTCCAATGTTA+AGG | + | chr4.3:36052519-36052538 | MS.gene056680:CDS | 40.0% | |
| CGATCCAAAAGCTCAATTGA+AGG | - | chr4.3:36052991-36053010 | None:intergenic | 40.0% | |
| GCCAGTAGTATATTGTAAGG+GGG | + | chr4.3:36051377-36051396 | MS.gene056680:intron | 40.0% | |
| GCTTCTTGCATTAGGTAAAC+AGG | + | chr4.3:36052366-36052385 | MS.gene056680:CDS | 40.0% | |
| GTAAGGAATGATGCTAACCT+CGG | + | chr4.3:36053168-36053187 | MS.gene056680:CDS | 40.0% | |
| GTCCCAAAAGATTCGTCATT+TGG | - | chr4.3:36050113-36050132 | None:intergenic | 40.0% | |
| GTGCAAACTTGCACATGATA+AGG | - | chr4.3:36051950-36051969 | None:intergenic | 40.0% | |
| GTGTTAAGACTTCGACTTTC+AGG | - | chr4.3:36050164-36050183 | None:intergenic | 40.0% | |
| GTTCTTCATTGAAAACGGCT+TGG | - | chr4.3:36053050-36053069 | None:intergenic | 40.0% | |
| GTTTATCTGATGGCTTGAGA+AGG | + | chr4.3:36049723-36049742 | MS.gene056680:intron | 40.0% | |
| TAGTTCATACCACGAGGATA+TGG | + | chr4.3:36052926-36052945 | MS.gene056680:CDS | 40.0% | |
| TATCTATGACGAACCTGTGA+TGG | + | chr4.3:36052891-36052910 | MS.gene056680:CDS | 40.0% | |
| TGAGGGTTGTTCTTCATCAA+AGG | - | chr4.3:36048738-36048757 | None:intergenic | 40.0% | |
| TGCCTAAGTAACGACAAATC+AGG | - | chr4.3:36049782-36049801 | None:intergenic | 40.0% | |
| TGGACTCAACATCTGAATCA+CGG | - | chr4.3:36052828-36052847 | None:intergenic | 40.0% | |
| ! | AGATTTTATCATACCCCCTC+CGG | + | chr4.3:36050809-36050828 | MS.gene056680:intron | 40.0% |
| ! | AGCCTGATTTGTCGTTACTT+AGG | + | chr4.3:36049777-36049796 | MS.gene056680:intron | 40.0% |
| ! | CCACCAAATGACGAATCTTT+TGG | + | chr4.3:36050107-36050126 | MS.gene056680:intron | 40.0% |
| ! | CCCATTTTACAAAAGAGACC+CGG | + | chr4.3:36052648-36052667 | MS.gene056680:CDS | 40.0% |
| ! | CCGGGTCTCTTTTGTAAAAT+GGG | - | chr4.3:36052651-36052670 | None:intergenic | 40.0% |
| ! | TAAATGGGACACACCCTTTT+GGG | + | chr4.3:36051070-36051089 | MS.gene056680:intron | 40.0% |
| ! | TCCGGGTCTCTTTTGTAAAA+TGG | - | chr4.3:36052652-36052671 | None:intergenic | 40.0% |
| ! | TTAAATGGGACACACCCTTT+TGG | + | chr4.3:36051069-36051088 | MS.gene056680:intron | 40.0% |
| !! | CTTTGAAATTTCCTCGTCGA+AGG | - | chr4.3:36052608-36052627 | None:intergenic | 40.0% |
| !!! | CAAGAAGCATTTTTTCTGCC+TGG | - | chr4.3:36052354-36052373 | None:intergenic | 40.0% |
| !!! | TAGGGGTGTTTTGGGTATTT+AGG | + | chr4.3:36049810-36049829 | MS.gene056680:intron | 40.0% |
| AAGGCCTTGACAGTACCAAA+AGG | - | chr4.3:36052403-36052422 | None:intergenic | 45.0% | |
| AATCGTCACCTACCTATTGC+TGG | + | chr4.3:36048870-36048889 | MS.gene056680:CDS | 45.0% | |
| ACGACAAATCAGGCTCATAG+AGG | - | chr4.3:36049772-36049791 | None:intergenic | 45.0% | |
| ATCAGGAGCAACAGTAGGAT+TGG | - | chr4.3:36052431-36052450 | None:intergenic | 45.0% | |
| ATTGAGCGCAGAGAAAGAGA+AGG | + | chr4.3:36048711-36048730 | MS.gene056680:CDS | 45.0% | |
| ATTTGCCAATCTCGGGTTCA+CGG | - | chr4.3:36052458-36052477 | None:intergenic | 45.0% | |
| CGACAAATCAGGCTCATAGA+GGG | - | chr4.3:36049771-36049790 | None:intergenic | 45.0% | |
| CTACATGATGTGGGTCATTG+AGG | + | chr4.3:36049093-36049112 | MS.gene056680:intron | 45.0% | |
| GATGTTGAGTCCATGAGTGA+TGG | + | chr4.3:36052835-36052854 | MS.gene056680:CDS | 45.0% | |
| GATTCATCAGGAGCAACAGT+AGG | - | chr4.3:36052436-36052455 | None:intergenic | 45.0% | |
| GGTATTTAGGCGCGTTCTAA+AGG | + | chr4.3:36049823-36049842 | MS.gene056680:intron | 45.0% | |
| TACAAAAGAGACCCGGATGA+TGG | + | chr4.3:36052655-36052674 | MS.gene056680:CDS | 45.0% | |
| TTCATTCGCCGAAGCTTATC+AGG | - | chr4.3:36053231-36053250 | None:intergenic | 45.0% | |
| ! | AGCCCTTTCAGAGGTCTTTT+AGG | + | chr4.3:36049942-36049961 | MS.gene056680:intron | 45.0% |
| ! | AGGTGAGTGAGTTGACAGAA+AGG | + | chr4.3:36052302-36052321 | MS.gene056680:CDS | 45.0% |
| ! | CAGGAAAAAGCTGGACCTTT+TGG | + | chr4.3:36052385-36052404 | MS.gene056680:CDS | 45.0% |
| ! | CTCGATTAGTTCATACCACG+AGG | + | chr4.3:36052920-36052939 | MS.gene056680:CDS | 45.0% |
| ! | CTTTCAGGTGAATGAGACTC+TGG | - | chr4.3:36050149-36050168 | None:intergenic | 45.0% |
| ! | GCTTTCCAAGGAGAAAGCAT+GGG | + | chr4.3:36053023-36053042 | MS.gene056680:CDS | 45.0% |
| ! | TGGACCTTTTGGTACTGTCA+AGG | + | chr4.3:36052396-36052415 | MS.gene056680:CDS | 45.0% |
| !! | GGAAAGGTTTGAGAGCATCT+TGG | - | chr4.3:36053284-36053303 | None:intergenic | 45.0% |
| !! | TAAAATCAAATTTATAAAAA+GGG | - | chr4.3:36049439-36049458 | None:intergenic | 5.0% |
| !! | TTAAAATCAAATTTATAAAA+AGG | - | chr4.3:36049440-36049459 | None:intergenic | 5.0% |
| !!! | TTATTTTAAAATAAAGTAAA+GGG | - | chr4.3:36050651-36050670 | None:intergenic | 5.0% |
| AAGCCTTAGCGCCTCCTAAA+AGG | - | chr4.3:36049907-36049926 | None:intergenic | 50.0% | |
| AATCGAGACCAACCCATCAC+AGG | - | chr4.3:36052907-36052926 | None:intergenic | 50.0% | |
| AGCAGAGCAAGGAAAAGACC+AGG | + | chr4.3:36052333-36052352 | MS.gene056680:CDS | 50.0% | |
| AGCATGAAGCCCGTCATAAC+CGG | - | chr4.3:36053091-36053110 | None:intergenic | 50.0% | |
| AGCCTTAGCGCCTCCTAAAA+GGG | - | chr4.3:36049906-36049925 | None:intergenic | 50.0% | |
| AGGCTTCAAGAAGCGAGTAG+AGG | + | chr4.3:36049843-36049862 | MS.gene056680:intron | 50.0% | |
| ATTGGTGAACCAGACCTCGA+GGG | - | chr4.3:36052548-36052567 | None:intergenic | 50.0% | |
| CAATGTTAAGGAGACCCTCG+AGG | + | chr4.3:36052531-36052550 | MS.gene056680:CDS | 50.0% | |
| CACTTTGAGCCATCAGGGAA+AGG | - | chr4.3:36053300-36053319 | None:intergenic | 50.0% | |
| CTCGAGGGTCTCCTTAACAT+TGG | - | chr4.3:36052533-36052552 | None:intergenic | 50.0% | |
| CTTCAAGAAGCGAGTAGAGG+CGG | + | chr4.3:36049846-36049865 | MS.gene056680:intron | 50.0% | |
| CTTTCCCTGATGGCTCAAAG+TGG | + | chr4.3:36053298-36053317 | MS.gene056680:CDS | 50.0% | |
| GCTCTCAAACCTTTCCCTGA+TGG | + | chr4.3:36053288-36053307 | MS.gene056680:CDS | 50.0% | |
| GGCTTTCCAAGGAGAAAGCA+TGG | + | chr4.3:36053022-36053041 | MS.gene056680:CDS | 50.0% | |
| GGGTCTAAAAGCCCTTTCAG+AGG | + | chr4.3:36049933-36049952 | MS.gene056680:intron | 50.0% | |
| TAAAAGGGCCATGAGGCTCA+AGG | - | chr4.3:36049891-36049910 | None:intergenic | 50.0% | |
| TATTGCTGGACCCAAGACTC+AGG | + | chr4.3:36048884-36048903 | MS.gene056680:CDS | 50.0% | |
| TATTGGTGAACCAGACCTCG+AGG | - | chr4.3:36052549-36052568 | None:intergenic | 50.0% | |
| TCTAGTTGTTGCCTTCGACG+AGG | + | chr4.3:36052594-36052613 | MS.gene056680:CDS | 50.0% | |
| TCTTGGGTCCAGCAATAGGT+AGG | - | chr4.3:36048881-36048900 | None:intergenic | 50.0% | |
| TGAATCCGTGAACCCGAGAT+TGG | + | chr4.3:36052450-36052469 | MS.gene056680:CDS | 50.0% | |
| TGAGTCTTGGGTCCAGCAAT+AGG | - | chr4.3:36048885-36048904 | None:intergenic | 50.0% | |
| TTCGCCGAAGCTTATCAGGA+TGG | - | chr4.3:36053227-36053246 | None:intergenic | 50.0% | |
| TTGGTCCCATGCTTTCTCCT+TGG | - | chr4.3:36053031-36053050 | None:intergenic | 50.0% | |
| ! | AGGCGCTAAGGCTTCTGAAA+GGG | + | chr4.3:36049913-36049932 | MS.gene056680:intron | 50.0% |
| ! | CTCTTTTATCCGTCCCATCC+CGG | + | chr4.3:36053069-36053088 | MS.gene056680:CDS | 50.0% |
| ! | TTGAGCCTCATGGCCCTTTT+AGG | + | chr4.3:36049890-36049909 | MS.gene056680:intron | 50.0% |
| ! | TTTTGGATCGTGTCGCGACA+AGG | + | chr4.3:36053001-36053020 | MS.gene056680:CDS | 50.0% |
| !! | ATGACGAACCTGTGATGGGT+TGG | + | chr4.3:36052896-36052915 | MS.gene056680:CDS | 50.0% |
| AAGCCCGTCATAACCGGGAT+GGG | - | chr4.3:36053085-36053104 | None:intergenic | 55.0% | |
| AGGCTTCAGCTAGCAGAGCA+AGG | + | chr4.3:36052322-36052341 | MS.gene056680:CDS | 55.0% | |
| CGGACACGGAGTGTGAAAGT+TGG | - | chr4.3:36049260-36049279 | None:intergenic | 55.0% | |
| CTCGGGTTCACGGATTCATC+AGG | - | chr4.3:36052448-36052467 | None:intergenic | 55.0% | |
| GCATGAAGCCCGTCATAACC+GGG | - | chr4.3:36053090-36053109 | None:intergenic | 55.0% | |
| TGTCGCGACAAGGCTTTCCA+AGG | + | chr4.3:36053011-36053030 | MS.gene056680:CDS | 55.0% | |
| TTAAGGAGACCCTCGAGGTC+TGG | + | chr4.3:36052536-36052555 | MS.gene056680:CDS | 55.0% | |
| ! | AGCCTCATGGCCCTTTTAGG+AGG | + | chr4.3:36049893-36049912 | MS.gene056680:intron | 55.0% |
| ! | GAGGCGCTAAGGCTTCTGAA+AGG | + | chr4.3:36049912-36049931 | MS.gene056680:intron | 55.0% |
| CCGTCATAACCGGGATGGGA+CGG | - | chr4.3:36053081-36053100 | None:intergenic | 60.0% | |
| CCGTCCCATCCCGGTTATGA+CGG | + | chr4.3:36053078-36053097 | MS.gene056680:CDS | 60.0% | |
| CGCCTCCTAAAAGGGCCATG+AGG | - | chr4.3:36049898-36049917 | None:intergenic | 60.0% | |
| CGTCCCATCCCGGTTATGAC+GGG | + | chr4.3:36053079-36053098 | MS.gene056680:CDS | 60.0% | |
| GAAGCCCGTCATAACCGGGA+TGG | - | chr4.3:36053086-36053105 | None:intergenic | 60.0% | |
| ! | AGCGAGTAGAGGCGGTGTCA+TGG | + | chr4.3:36049854-36049873 | MS.gene056680:intron | 60.0% |
| !! | CGAGTAGAGGCGGTGTCATG+GGG | + | chr4.3:36049856-36049875 | MS.gene056680:intron | 60.0% |
| !! | GCGAGTAGAGGCGGTGTCAT+GGG | + | chr4.3:36049855-36049874 | MS.gene056680:intron | 60.0% |
| !!! | GGCCCTTTTAGGAGGCGCTA+AGG | + | chr4.3:36049901-36049920 | MS.gene056680:intron | 60.0% |
| GGAACGCGCCTTGAGCCTCA+TGG | + | chr4.3:36049880-36049899 | MS.gene056680:intron | 65.0% | |
| !! | GTAGAGGCGGTGTCATGGGG+AGG | + | chr4.3:36049859-36049878 | MS.gene056680:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 36048708 | 36053323 | 36048708 | ID=MS.gene056680 |
| chr4.3 | mRNA | 36048708 | 36053323 | 36048708 | ID=MS.gene056680.t1;Parent=MS.gene056680 |
| chr4.3 | exon | 36048708 | 36048905 | 36048708 | ID=MS.gene056680.t1.exon1;Parent=MS.gene056680.t1 |
| chr4.3 | CDS | 36048708 | 36048905 | 36048708 | ID=cds.MS.gene056680.t1;Parent=MS.gene056680.t1 |
| chr4.3 | exon | 36052205 | 36053323 | 36052205 | ID=MS.gene056680.t1.exon2;Parent=MS.gene056680.t1 |
| chr4.3 | CDS | 36052205 | 36053323 | 36052205 | ID=cds.MS.gene056680.t1;Parent=MS.gene056680.t1 |
| Gene Sequence |
| Protein sequence |
