Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76966.t1 | XP_013447514.1 | 95.8 | 311 | 13 | 0 | 1 | 311 | 1 | 311 | 3.00E-169 | 604.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76966.t1 | Q55DL2 | 44.5 | 220 | 94 | 6 | 92 | 311 | 116 | 307 | 3.0e-40 | 167.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76966.t1 | I3S9D2 | 95.8 | 311 | 13 | 0 | 1 | 311 | 1 | 311 | 2.2e-169 | 604.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene057060 | MS.gene76966 | 0.812585 | 3.94E-51 | -1.69E-46 |
| MS.gene058216 | MS.gene76966 | 0.818722 | 1.69E-52 | -1.69E-46 |
| MS.gene060429 | MS.gene76966 | 0.817665 | 2.93E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76966.t1 | MTR_7g008030 | 95.820 | 311 | 13 | 0 | 1 | 311 | 1 | 311 | 0.0 | 612 |
| MS.gene76966.t1 | MTR_2g098630 | 34.056 | 323 | 139 | 9 | 50 | 311 | 37 | 346 | 6.68e-51 | 172 |
| MS.gene76966.t1 | MTR_2g098630 | 34.056 | 323 | 139 | 9 | 50 | 311 | 53 | 362 | 8.70e-51 | 172 |
| MS.gene76966.t1 | MTR_2g098630 | 33.636 | 220 | 79 | 7 | 153 | 311 | 43 | 256 | 4.15e-28 | 109 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76966.t1 | AT4G14000 | 61.074 | 298 | 107 | 3 | 14 | 311 | 2 | 290 | 2.66e-115 | 335 |
| MS.gene76966.t1 | AT2G43320 | 37.117 | 326 | 136 | 9 | 48 | 311 | 33 | 351 | 6.21e-61 | 198 |
| MS.gene76966.t1 | AT2G43320 | 37.117 | 326 | 136 | 9 | 48 | 311 | 33 | 351 | 6.21e-61 | 198 |
Find 61 sgRNAs with CRISPR-Local
Find 203 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGATGGGGTTACTTTGTTTA+AGG | 0.171665 | 7.2:+89801206 | MS.gene76966:CDS |
| AGAAACATTGGCATTTATAT+TGG | 0.194429 | 7.2:-89803042 | None:intergenic |
| AATATAAATGCCAATGTTTC+TGG | 0.219315 | 7.2:+89803044 | MS.gene76966:CDS |
| AGCTGAAATGTTTCGAAATT+CGG | 0.259476 | 7.2:-89800924 | None:intergenic |
| TCCAACTCTGATTTAGTTCC+TGG | 0.286361 | 7.2:+89801801 | MS.gene76966:CDS |
| TCCTCCGTAGGTTCTGGTTT+CGG | 0.305874 | 7.2:+89800954 | MS.gene76966:CDS |
| GAAACATTGGCATTTATATT+GGG | 0.315058 | 7.2:-89803041 | None:intergenic |
| GCATTATGTTTAACGAATAA+AGG | 0.316520 | 7.2:-89801168 | None:intergenic |
| AGATGAACCATCTGTGATTT+CGG | 0.352865 | 7.2:-89804457 | None:intergenic |
| AAACTCAGAGTGTGATTCTA+AGG | 0.361676 | 7.2:+89800813 | MS.gene76966:CDS |
| CATCTAATGTGCGTGAAGTA+TGG | 0.368040 | 7.2:+89804475 | MS.gene76966:CDS |
| AGTGAGCTTATTTCATTTAG+TGG | 0.381154 | 7.2:+89802165 | MS.gene76966:CDS |
| TAGTGGGAAACGAGTATTAG+AGG | 0.402144 | 7.2:+89802182 | MS.gene76966:CDS |
| GCAAAACACAATGAAGGTTC+TGG | 0.409363 | 7.2:+89803176 | MS.gene76966:CDS |
| TCAAGCAAAGCATAGATTCC+AGG | 0.458718 | 7.2:-89802873 | None:intergenic |
| GTGAGCTTATTTCATTTAGT+GGG | 0.460422 | 7.2:+89802166 | MS.gene76966:CDS |
| GCTGCAAAGAAGTATTACTT+TGG | 0.479297 | 7.2:+89803440 | MS.gene76966:CDS |
| ATTCAGGTCGGATGCGGTCA+TGG | 0.485010 | 7.2:+89802846 | MS.gene76966:intron |
| GGATGCGGTCATGGACTGCC+TGG | 0.512316 | 7.2:+89802855 | MS.gene76966:CDS |
| AAGTGCTTGCTACGTCCTCA+TGG | 0.525563 | 7.2:+89803404 | MS.gene76966:intron |
| AAGAAGTATTACTTTGGAGT+AGG | 0.526620 | 7.2:+89803446 | MS.gene76966:CDS |
| TTTGTCGAGCTAGACGGCGA+TGG | 0.544702 | 7.2:-89803077 | None:intergenic |
| TTGGAGTAGGCGGAGGAACT+CGG | 0.551545 | 7.2:+89803459 | MS.gene76966:CDS |
| CCCAGGAACTAAATCAGAGT+TGG | 0.552791 | 7.2:-89801802 | None:intergenic |
| CCAACTCTGATTTAGTTCCT+GGG | 0.553319 | 7.2:+89801802 | MS.gene76966:CDS |
| TCTATACAATCTAATCAAGA+AGG | 0.554077 | 7.2:+89803253 | MS.gene76966:CDS |
| TGGAATCTATGCTTTGCTTG+AGG | 0.559472 | 7.2:+89802875 | MS.gene76966:CDS |
| GTTTAGGAGGACTGAAGCTG+TGG | 0.560778 | 7.2:+89802097 | MS.gene76966:intron |
| CAATCACCTTCGTACTTCCC+AGG | 0.563330 | 7.2:-89801819 | None:intergenic |
| TTGTCATTTGTCGAGCTAGA+CGG | 0.566846 | 7.2:-89803083 | None:intergenic |
| AGTTCTTGTTTCTGAATCAG+AGG | 0.567758 | 7.2:+89801034 | MS.gene76966:CDS |
| TATTTGATTCAGGTCGGATG+CGG | 0.568323 | 7.2:+89802840 | MS.gene76966:intron |
| TATTACTTTGGAGTAGGCGG+AGG | 0.575446 | 7.2:+89803452 | MS.gene76966:CDS |
| ACAGATGCAAAACACAATGA+AGG | 0.576866 | 7.2:+89803170 | MS.gene76966:CDS |
| AAGTATTACTTTGGAGTAGG+CGG | 0.584131 | 7.2:+89803449 | MS.gene76966:CDS |
| TTGCGATCCTCCAGAAACAT+TGG | 0.587349 | 7.2:-89803054 | None:intergenic |
| GAAACCAGAACCTACGGAGG+AGG | 0.588502 | 7.2:-89800952 | None:intergenic |
| TCCTCATGGAGTTGTGTACA+TGG | 0.589912 | 7.2:+89803418 | MS.gene76966:CDS |
| CTATCTGTGGTGGAAGAAGA+TGG | 0.592623 | 7.2:+89803488 | MS.gene76966:CDS |
| AGAACTTCAACACAAGGAGG+TGG | 0.600071 | 7.2:-89801017 | None:intergenic |
| TCGGAGATTTCTATCTGTGG+TGG | 0.606490 | 7.2:+89803478 | MS.gene76966:CDS |
| TATTCCGAAACCAGAACCTA+CGG | 0.608029 | 7.2:-89800958 | None:intergenic |
| GGAGGACTGAAGCTGTGGGA+AGG | 0.608529 | 7.2:+89802102 | MS.gene76966:intron |
| ATTCGTTAAACATAATGCTG+AGG | 0.610815 | 7.2:+89801173 | MS.gene76966:CDS |
| ACTTCAACACAAGGAGGTGG+AGG | 0.612980 | 7.2:-89801014 | None:intergenic |
| TTTGCATCTGTACCAACATG+AGG | 0.622268 | 7.2:-89803158 | None:intergenic |
| AACTCGGAGATTTCTATCTG+TGG | 0.630180 | 7.2:+89803475 | MS.gene76966:CDS |
| TTAGTTCCTGGGAAGTACGA+AGG | 0.631246 | 7.2:+89801813 | MS.gene76966:CDS |
| GTCTAGCTCGACAAATGACA+AGG | 0.635144 | 7.2:+89803085 | MS.gene76966:CDS |
| TTGCATCTGTACCAACATGA+GGG | 0.641128 | 7.2:-89803157 | None:intergenic |
| GATAAACTGCTCCCTCATGT+TGG | 0.641741 | 7.2:+89803146 | MS.gene76966:CDS |
| ATAAATGCCAATGTTTCTGG+AGG | 0.642509 | 7.2:+89803047 | MS.gene76966:CDS |
| ATGGTTGCCGAAATCACAGA+TGG | 0.649641 | 7.2:+89804450 | MS.gene76966:CDS |
| TTTAGGAGGACTGAAGCTGT+GGG | 0.658500 | 7.2:+89802098 | MS.gene76966:intron |
| TGTGAGACATCGTAGGACCT+CGG | 0.666981 | 7.2:-89803015 | None:intergenic |
| TGGGAATTGTGAGACATCGT+AGG | 0.667161 | 7.2:-89803022 | None:intergenic |
| AGGCATCTTGACTAGTAACA+TGG | 0.667629 | 7.2:+89804431 | MS.gene76966:intron |
| GAAACAAGAACTTCAACACA+AGG | 0.676741 | 7.2:-89801023 | None:intergenic |
| GCCATGTACACAACTCCATG+AGG | 0.705782 | 7.2:-89803419 | None:intergenic |
| ACAAGAACTTCAACACAAGG+AGG | 0.724215 | 7.2:-89801020 | None:intergenic |
| TCCGAAACCAGAACCTACGG+AGG | 0.726034 | 7.2:-89800955 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAATTCATAATGTT+TGG | - | chr7.2:89804011-89804030 | None:intergenic | 10.0% |
| !! | GATAATATGAATAATAAATT+TGG | - | chr7.2:89801704-89801723 | None:intergenic | 10.0% |
| !!! | AAACATTATGAATTTTTTTT+TGG | + | chr7.2:89804010-89804029 | MS.gene76966:intron | 10.0% |
| !!! | ATAAAAATTAAGTTTTTAAC+CGG | - | chr7.2:89801469-89801488 | None:intergenic | 10.0% |
| !! | AATTTGATATTTCGTATATT+TGG | + | chr7.2:89801674-89801693 | MS.gene76966:intron | 15.0% |
| !! | ATTTGATATTTCGTATATTT+GGG | + | chr7.2:89801675-89801694 | MS.gene76966:intron | 15.0% |
| !!! | AAACTTAATTTTTATGATGA+TGG | + | chr7.2:89801474-89801493 | MS.gene76966:intron | 15.0% |
| !!! | ACTTAAATTTTTATGCAAAT+TGG | - | chr7.2:89801504-89801523 | None:intergenic | 15.0% |
| !!! | ATTGACAAAAAACAATTTTA+GGG | + | chr7.2:89801648-89801667 | MS.gene76966:intron | 15.0% |
| !!! | ATTTTTCTCTTATCAATTAA+CGG | + | chr7.2:89800865-89800884 | MS.gene76966:intron | 15.0% |
| !!! | GATATTATTAGATATTTCTA+TGG | + | chr7.2:89804081-89804100 | MS.gene76966:intron | 15.0% |
| !!! | TGCATTTTTTAAATCAAAAT+GGG | + | chr7.2:89804148-89804167 | MS.gene76966:intron | 15.0% |
| !!! | TTGCATTTTTTAAATCAAAA+TGG | + | chr7.2:89804147-89804166 | MS.gene76966:intron | 15.0% |
| !! | ATCTTTGCTGATAAAAATAT+TGG | + | chr7.2:89803352-89803371 | MS.gene76966:intron | 20.0% |
| !! | TAGTTTCAAATATTTGATTC+AGG | + | chr7.2:89802830-89802849 | MS.gene76966:intron | 20.0% |
| !! | TTGATATACAATTGAATAAG+AGG | + | chr7.2:89802318-89802337 | MS.gene76966:intron | 20.0% |
| !! | TTTGATATTTCGTATATTTG+GGG | + | chr7.2:89801676-89801695 | MS.gene76966:intron | 20.0% |
| !!! | ATAGCTTATACTAGTTTATA+TGG | + | chr7.2:89802747-89802766 | MS.gene76966:intron | 20.0% |
| !!! | ATAGTATTGATATATGCAAA+AGG | + | chr7.2:89803515-89803534 | MS.gene76966:intron | 20.0% |
| !!! | ATTTTTGAGCTTATGAAAAA+TGG | - | chr7.2:89802683-89802702 | None:intergenic | 20.0% |
| !!! | CATTTTTTAAATCAAAATGG+GGG | + | chr7.2:89804150-89804169 | MS.gene76966:intron | 20.0% |
| !!! | GATTGACAAAAAACAATTTT+AGG | + | chr7.2:89801647-89801666 | MS.gene76966:intron | 20.0% |
| !!! | GCATTTTTTAAATCAAAATG+GGG | + | chr7.2:89804149-89804168 | MS.gene76966:intron | 20.0% |
| !!! | TTATACAGTTTTAACTATCA+AGG | + | chr7.2:89804038-89804057 | MS.gene76966:intron | 20.0% |
| !!! | TTTTTTTGTTGTTGTTTTGT+TGG | + | chr7.2:89801128-89801147 | MS.gene76966:intron | 20.0% |
| ! | AAAAATTCATAATGTTTGGC+CGG | - | chr7.2:89804007-89804026 | None:intergenic | 25.0% |
| ! | AATATAAATGCCAATGTTTC+TGG | + | chr7.2:89803044-89803063 | MS.gene76966:CDS | 25.0% |
| ! | ACCGTATTATTTATCAATCT+GGG | + | chr7.2:89804119-89804138 | MS.gene76966:intron | 25.0% |
| ! | AGAAACATTGGCATTTATAT+TGG | - | chr7.2:89803045-89803064 | None:intergenic | 25.0% |
| ! | ATAAGTTATTCAAGAGAACT+GGG | - | chr7.2:89802723-89802742 | None:intergenic | 25.0% |
| ! | ATATCTAATAATATCCTGTG+AGG | - | chr7.2:89804076-89804095 | None:intergenic | 25.0% |
| ! | ATGTAATGATGTGTTTACTA+TGG | + | chr7.2:89802950-89802969 | MS.gene76966:intron | 25.0% |
| ! | ATTAAGTAGTTTCGTTGATA+CGG | + | chr7.2:89803590-89803609 | MS.gene76966:intron | 25.0% |
| ! | GAAACATTGGCATTTATATT+GGG | - | chr7.2:89803044-89803063 | None:intergenic | 25.0% |
| ! | GCATTATGTTTAACGAATAA+AGG | - | chr7.2:89801171-89801190 | None:intergenic | 25.0% |
| ! | TACAATTTCAGAACTCAAAA+TGG | - | chr7.2:89801295-89801314 | None:intergenic | 25.0% |
| ! | TCTATACAATCTAATCAAGA+AGG | + | chr7.2:89803253-89803272 | MS.gene76966:CDS | 25.0% |
| ! | TTCAAATATTTGATTCAGGT+CGG | + | chr7.2:89802834-89802853 | MS.gene76966:intron | 25.0% |
| ! | TTCAGAATACATGTTTATGT+TGG | - | chr7.2:89801985-89802004 | None:intergenic | 25.0% |
| ! | TTTGTTGGATTGTTGAAATT+AGG | + | chr7.2:89801143-89801162 | MS.gene76966:intron | 25.0% |
| !! | ATTGATTTCCTACTATACTA+TGG | + | chr7.2:89803912-89803931 | MS.gene76966:intron | 25.0% |
| !! | TGGTTATGATTTTATTCTCA+TGG | + | chr7.2:89803196-89803215 | MS.gene76966:CDS | 25.0% |
| !! | TTATGATTTTATTCTCATGG+CGG | + | chr7.2:89803199-89803218 | MS.gene76966:CDS | 25.0% |
| !!! | AGTTTTATCACATTCTTGTA+GGG | + | chr7.2:89801747-89801766 | MS.gene76966:intron | 25.0% |
| !!! | GTGACTTCAATTTTTTCTTA+TGG | + | chr7.2:89804199-89804218 | MS.gene76966:intron | 25.0% |
| !!! | TAGTTTTATCACATTCTTGT+AGG | + | chr7.2:89801746-89801765 | MS.gene76966:intron | 25.0% |
| AAAAATAAGCCAATCCAAAC+GGG | + | chr7.2:89802697-89802716 | MS.gene76966:intron | 30.0% | |
| AATTTCAGAACTCAAAATGG+TGG | - | chr7.2:89801292-89801311 | None:intergenic | 30.0% | |
| ACTGATCCATGTAATTATAC+CGG | + | chr7.2:89803985-89804004 | MS.gene76966:intron | 30.0% | |
| ACTTATTTGAGCTTATCTAC+TGG | + | chr7.2:89802372-89802391 | MS.gene76966:intron | 30.0% | |
| AGCTGAAATGTTTCGAAATT+CGG | - | chr7.2:89800927-89800946 | None:intergenic | 30.0% | |
| AGTGAGCTTATTTCATTTAG+TGG | + | chr7.2:89802165-89802184 | MS.gene76966:CDS | 30.0% | |
| ATCAGAGGTAAATTCTTGTT+TGG | + | chr7.2:89801049-89801068 | MS.gene76966:intron | 30.0% | |
| ATTAACACACCTTTAGTCTA+TGG | + | chr7.2:89802018-89802037 | MS.gene76966:intron | 30.0% | |
| ATTACATGGATCAGTGATTT+AGG | - | chr7.2:89803980-89803999 | None:intergenic | 30.0% | |
| ATTCGTTAAACATAATGCTG+AGG | + | chr7.2:89801173-89801192 | MS.gene76966:CDS | 30.0% | |
| CAAAAATAAGCCAATCCAAA+CGG | + | chr7.2:89802696-89802715 | MS.gene76966:intron | 30.0% | |
| CAAATGAGTCCTTCATATAT+CGG | - | chr7.2:89803954-89803973 | None:intergenic | 30.0% | |
| CATAAGTTATTCAAGAGAAC+TGG | - | chr7.2:89802724-89802743 | None:intergenic | 30.0% | |
| CATTGCAAAATTGCAATTAC+TGG | - | chr7.2:89803297-89803316 | None:intergenic | 30.0% | |
| GACCGTATTATTTATCAATC+TGG | + | chr7.2:89804118-89804137 | MS.gene76966:intron | 30.0% | |
| GATCAACTAAAAACAGCTTA+TGG | - | chr7.2:89802455-89802474 | None:intergenic | 30.0% | |
| GCCCAGATTGATAAATAATA+CGG | - | chr7.2:89804123-89804142 | None:intergenic | 30.0% | |
| GTGAGCTTATTTCATTTAGT+GGG | + | chr7.2:89802166-89802185 | MS.gene76966:CDS | 30.0% | |
| GTGTTTACTATGGTTGATTA+GGG | + | chr7.2:89802960-89802979 | MS.gene76966:intron | 30.0% | |
| TACTAAATCAGTTGCAACTT+TGG | + | chr7.2:89802065-89802084 | MS.gene76966:intron | 30.0% | |
| TCTAAACACAAGTTTCATAC+CGG | + | chr7.2:89801447-89801466 | MS.gene76966:intron | 30.0% | |
| TGCAAACAAGTTATGACATA+TGG | + | chr7.2:89802429-89802448 | MS.gene76966:intron | 30.0% | |
| TGTCATGTTAAATGACACTT+TGG | - | chr7.2:89801586-89801605 | None:intergenic | 30.0% | |
| TGTGTTTACTATGGTTGATT+AGG | + | chr7.2:89802959-89802978 | MS.gene76966:intron | 30.0% | |
| TGTTTACTATGGTTGATTAG+GGG | + | chr7.2:89802961-89802980 | MS.gene76966:intron | 30.0% | |
| TTAAGTAGTTTCGTTGATAC+GGG | + | chr7.2:89803591-89803610 | MS.gene76966:intron | 30.0% | |
| ! | ACTTTTGATATCTGAACGAA+GGG | - | chr7.2:89802148-89802167 | None:intergenic | 30.0% |
| ! | ATACTAAAGTACTAACTGGT+AGG | - | chr7.2:89804374-89804393 | None:intergenic | 30.0% |
| ! | CTCTGTCATTTAACTCATTT+GGG | - | chr7.2:89801619-89801638 | None:intergenic | 30.0% |
| ! | GAGGTGAAACTATGTTTTAT+TGG | + | chr7.2:89802894-89802913 | MS.gene76966:intron | 30.0% |
| ! | GCATATACTAAAGTACTAAC+TGG | - | chr7.2:89804378-89804397 | None:intergenic | 30.0% |
| ! | GTGAATACTCAACAAGTTTT+TGG | + | chr7.2:89801774-89801793 | MS.gene76966:CDS | 30.0% |
| ! | TACTAAAGTACTAACTGGTA+GGG | - | chr7.2:89804373-89804392 | None:intergenic | 30.0% |
| ! | TCAAAAAAAGCCTTATCCAA+AGG | - | chr7.2:89802491-89802510 | None:intergenic | 30.0% |
| ! | TCTCTGTCATTTAACTCATT+TGG | - | chr7.2:89801620-89801639 | None:intergenic | 30.0% |
| ! | TCTGTCATTTAACTCATTTG+GGG | - | chr7.2:89801618-89801637 | None:intergenic | 30.0% |
| !! | AAGAAGTATTACTTTGGAGT+AGG | + | chr7.2:89803446-89803465 | MS.gene76966:CDS | 30.0% |
| !! | CTGAGGAAGTAAATTTTGAT+GGG | + | chr7.2:89801190-89801209 | MS.gene76966:CDS | 30.0% |
| !! | TACAGAGTATTGTCAAATAG+CGG | + | chr7.2:89803825-89803844 | MS.gene76966:intron | 30.0% |
| !! | TGAGGAAGTAAATTTTGATG+GGG | + | chr7.2:89801191-89801210 | MS.gene76966:CDS | 30.0% |
| !!! | ATGTTTTATTGGCTTTGCTT+TGG | + | chr7.2:89802905-89802924 | MS.gene76966:intron | 30.0% |
| !!! | TGTTTTTAGTTGATCTACGT+TGG | + | chr7.2:89802460-89802479 | MS.gene76966:intron | 30.0% |
| AAACGCACAACAATATTGGT+CGG | - | chr7.2:89803795-89803814 | None:intergenic | 35.0% | |
| AAACTCAGAGTGTGATTCTA+AGG | + | chr7.2:89800813-89800832 | MS.gene76966:CDS | 35.0% | |
| AAGAGGATATACTCAAAGCT+AGG | + | chr7.2:89802335-89802354 | MS.gene76966:intron | 35.0% | |
| AATCACTTGTGAGATTGCTT+GGG | + | chr7.2:89802398-89802417 | MS.gene76966:intron | 35.0% | |
| ACAGATGCAAAACACAATGA+AGG | + | chr7.2:89803170-89803189 | MS.gene76966:CDS | 35.0% | |
| AGAGGATATACTCAAAGCTA+GGG | + | chr7.2:89802336-89802355 | MS.gene76966:intron | 35.0% | |
| AGATGAACCATCTGTGATTT+CGG | - | chr7.2:89804460-89804479 | None:intergenic | 35.0% | |
| CGATATATGAAGGACTCATT+TGG | + | chr7.2:89803952-89803971 | MS.gene76966:intron | 35.0% | |
| GAAACAAGAACTTCAACACA+AGG | - | chr7.2:89801026-89801045 | None:intergenic | 35.0% | |
| GCTTCATAGATAGAAATGCA+AGG | - | chr7.2:89801854-89801873 | None:intergenic | 35.0% | |
| GTTTACTATGGTTGATTAGG+GGG | + | chr7.2:89802962-89802981 | MS.gene76966:intron | 35.0% | |
| TAACAGTGCTTTATATGTGC+AGG | + | chr7.2:89804411-89804430 | MS.gene76966:intron | 35.0% | |
| TAAGTAGATGTGATGTCACA+TGG | + | chr7.2:89801396-89801415 | MS.gene76966:intron | 35.0% | |
| TAATCACTTGTGAGATTGCT+TGG | + | chr7.2:89802397-89802416 | MS.gene76966:intron | 35.0% | |
| TCGGTATGAAACTTGTGTTT+AGG | + | chr7.2:89801529-89801548 | MS.gene76966:intron | 35.0% | |
| TGTGAAACGCACAACAATAT+TGG | - | chr7.2:89803799-89803818 | None:intergenic | 35.0% | |
| TTATCACATTCTTGTAGGGA+CGG | + | chr7.2:89801751-89801770 | MS.gene76966:intron | 35.0% | |
| TTTCTTATGGAAGTCGTACA+TGG | + | chr7.2:89804212-89804231 | MS.gene76966:intron | 35.0% | |
| ! | ACTAAAGGTGTGTTAATGTC+TGG | - | chr7.2:89802015-89802034 | None:intergenic | 35.0% |
| ! | ACTTGTGTTTAGGATATGTC+TGG | + | chr7.2:89801539-89801558 | MS.gene76966:intron | 35.0% |
| ! | ACTTTAAGAAAGCCGTACTT+GGG | + | chr7.2:89804313-89804332 | MS.gene76966:intron | 35.0% |
| ! | ACTTTGGTTTCCTTTGGTTT+AGG | + | chr7.2:89802081-89802100 | MS.gene76966:intron | 35.0% |
| ! | CACTTTTGATATCTGAACGA+AGG | - | chr7.2:89802149-89802168 | None:intergenic | 35.0% |
| ! | CTGTCATTTAACTCATTTGG+GGG | - | chr7.2:89801617-89801636 | None:intergenic | 35.0% |
| ! | CTTGTGTTTAGAATTTCGTG+TGG | - | chr7.2:89801439-89801458 | None:intergenic | 35.0% |
| ! | GCTGAGGAAGTAAATTTTGA+TGG | + | chr7.2:89801189-89801208 | MS.gene76966:CDS | 35.0% |
| ! | TGATGGGGTTACTTTGTTTA+AGG | + | chr7.2:89801206-89801225 | MS.gene76966:CDS | 35.0% |
| !! | AAGTATTACTTTGGAGTAGG+CGG | + | chr7.2:89803449-89803468 | MS.gene76966:CDS | 35.0% |
| !! | AGTTCTTGTTTCTGAATCAG+AGG | + | chr7.2:89801034-89801053 | MS.gene76966:CDS | 35.0% |
| !! | ATAAATGCCAATGTTTCTGG+AGG | + | chr7.2:89803047-89803066 | MS.gene76966:CDS | 35.0% |
| !! | GCTGCAAAGAAGTATTACTT+TGG | + | chr7.2:89803440-89803459 | MS.gene76966:CDS | 35.0% |
| !! | TTTTAGTTGATCTACGTTGG+TGG | + | chr7.2:89802463-89802482 | MS.gene76966:intron | 35.0% |
| AACTCGGAGATTTCTATCTG+TGG | + | chr7.2:89803475-89803494 | MS.gene76966:CDS | 40.0% | |
| AATGTCACCATTCCCAAGTA+CGG | - | chr7.2:89804328-89804347 | None:intergenic | 40.0% | |
| ACAAGAACTTCAACACAAGG+AGG | - | chr7.2:89801023-89801042 | None:intergenic | 40.0% | |
| ACCGCTATTGTTACACGTTA+CGG | + | chr7.2:89803708-89803727 | MS.gene76966:intron | 40.0% | |
| AGGCATCTTGACTAGTAACA+TGG | + | chr7.2:89804431-89804450 | MS.gene76966:intron | 40.0% | |
| CATATATCGGTGTATGTGCA+TGG | - | chr7.2:89803941-89803960 | None:intergenic | 40.0% | |
| CATCTAATGTGCGTGAAGTA+TGG | + | chr7.2:89804475-89804494 | MS.gene76966:CDS | 40.0% | |
| CATGGCAACCATAGTATAGT+AGG | - | chr7.2:89803923-89803942 | None:intergenic | 40.0% | |
| GCAAAACACAATGAAGGTTC+TGG | + | chr7.2:89803176-89803195 | MS.gene76966:CDS | 40.0% | |
| GCACATACACCGATATATGA+AGG | + | chr7.2:89803942-89803961 | MS.gene76966:intron | 40.0% | |
| GCATCAGTACCATAGACTAA+AGG | - | chr7.2:89802030-89802049 | None:intergenic | 40.0% | |
| GGCTTTCTTAAAGTCGCAAA+TGG | - | chr7.2:89804307-89804326 | None:intergenic | 40.0% | |
| GTTTGGCCGGTATAATTACA+TGG | - | chr7.2:89803994-89804013 | None:intergenic | 40.0% | |
| TAGTGGGAAACGAGTATTAG+AGG | + | chr7.2:89802182-89802201 | MS.gene76966:CDS | 40.0% | |
| TATCACATTCTTGTAGGGAC+GGG | + | chr7.2:89801752-89801771 | MS.gene76966:intron | 40.0% | |
| TATTCCGAAACCAGAACCTA+CGG | - | chr7.2:89800961-89800980 | None:intergenic | 40.0% | |
| TATTTGATTCAGGTCGGATG+CGG | + | chr7.2:89802840-89802859 | MS.gene76966:intron | 40.0% | |
| TCAAGCAAAGCATAGATTCC+AGG | - | chr7.2:89802876-89802895 | None:intergenic | 40.0% | |
| TCCGTAACGTGTAACAATAG+CGG | - | chr7.2:89803712-89803731 | None:intergenic | 40.0% | |
| TGGAATCTATGCTTTGCTTG+AGG | + | chr7.2:89802875-89802894 | MS.gene76966:CDS | 40.0% | |
| TTGCATCTGTACCAACATGA+GGG | - | chr7.2:89803160-89803179 | None:intergenic | 40.0% | |
| TTGCATTTAACGCGACACAA+CGG | - | chr7.2:89801365-89801384 | None:intergenic | 40.0% | |
| TTTGCATCTGTACCAACATG+AGG | - | chr7.2:89803161-89803180 | None:intergenic | 40.0% | |
| ! | ACTCAAAGCTAGGGTTTGTT+TGG | + | chr7.2:89802345-89802364 | MS.gene76966:intron | 40.0% |
| ! | CCAACTCTGATTTAGTTCCT+GGG | + | chr7.2:89801802-89801821 | MS.gene76966:CDS | 40.0% |
| ! | GACTTTAAGAAAGCCGTACT+TGG | + | chr7.2:89804312-89804331 | MS.gene76966:intron | 40.0% |
| ! | GTTGCAACTTTGGTTTCCTT+TGG | + | chr7.2:89802075-89802094 | MS.gene76966:intron | 40.0% |
| ! | GTTTAGAATTTCGTGTGGCA+TGG | - | chr7.2:89801434-89801453 | None:intergenic | 40.0% |
| ! | TCCAACTCTGATTTAGTTCC+TGG | + | chr7.2:89801801-89801820 | MS.gene76966:CDS | 40.0% |
| ! | TGTTTAGGATATGTCTGGCA+TGG | + | chr7.2:89801544-89801563 | MS.gene76966:intron | 40.0% |
| ! | TTGGTTTCCTTTGGTTTAGG+AGG | + | chr7.2:89802084-89802103 | MS.gene76966:intron | 40.0% |
| ! | TTGTCATTTGTCGAGCTAGA+CGG | - | chr7.2:89803086-89803105 | None:intergenic | 40.0% |
| !! | TTTTCAAGACTTCAATGCCG+AGG | + | chr7.2:89802998-89803017 | MS.gene76966:CDS | 40.0% |
| AAGAAAGCCGTACTTGGGAA+TGG | + | chr7.2:89804318-89804337 | MS.gene76966:intron | 45.0% | |
| AATCAATGTTGTCAACCGCG+CGG | - | chr7.2:89803895-89803914 | None:intergenic | 45.0% | |
| AGAACTTCAACACAAGGAGG+TGG | - | chr7.2:89801020-89801039 | None:intergenic | 45.0% | |
| ATGGTTGCCGAAATCACAGA+TGG | + | chr7.2:89804450-89804469 | MS.gene76966:CDS | 45.0% | |
| CCCAGGAACTAAATCAGAGT+TGG | - | chr7.2:89801805-89801824 | None:intergenic | 45.0% | |
| CTTCAGTCCTCCTAAACCAA+AGG | - | chr7.2:89802094-89802113 | None:intergenic | 45.0% | |
| GATAAACTGCTCCCTCATGT+TGG | + | chr7.2:89803146-89803165 | MS.gene76966:CDS | 45.0% | |
| GGATATGATGCAATCCTCAC+AGG | + | chr7.2:89804059-89804078 | MS.gene76966:intron | 45.0% | |
| GGGAAACGAGTATTAGAGGT+GGG | + | chr7.2:89802186-89802205 | MS.gene76966:intron | 45.0% | |
| GTGTCGCGTTAAATGCAACA+TGG | + | chr7.2:89801367-89801386 | MS.gene76966:intron | 45.0% | |
| TACATGGCTGATGGCATTGT+CGG | + | chr7.2:89804228-89804247 | MS.gene76966:intron | 45.0% | |
| TACTATGGTTGATTAGGGGG+CGG | + | chr7.2:89802965-89802984 | MS.gene76966:intron | 45.0% | |
| TCCTCATGGAGTTGTGTACA+TGG | + | chr7.2:89803418-89803437 | MS.gene76966:CDS | 45.0% | |
| TCGGAGATTTCTATCTGTGG+TGG | + | chr7.2:89803478-89803497 | MS.gene76966:CDS | 45.0% | |
| TGGGAAACGAGTATTAGAGG+TGG | + | chr7.2:89802185-89802204 | MS.gene76966:intron | 45.0% | |
| TGGGAATTGTGAGACATCGT+AGG | - | chr7.2:89803025-89803044 | None:intergenic | 45.0% | |
| TTGCGATCCTCCAGAAACAT+TGG | - | chr7.2:89803057-89803076 | None:intergenic | 45.0% | |
| TTTAGGAGGACTGAAGCTGT+GGG | + | chr7.2:89802098-89802117 | MS.gene76966:intron | 45.0% | |
| ! | CCATAACACTATTTTCCGCG+CGG | + | chr7.2:89803877-89803896 | MS.gene76966:intron | 45.0% |
| ! | CTATCTGTGGTGGAAGAAGA+TGG | + | chr7.2:89803488-89803507 | MS.gene76966:CDS | 45.0% |
| ! | GTCTAGCTCGACAAATGACA+AGG | + | chr7.2:89803085-89803104 | MS.gene76966:CDS | 45.0% |
| ! | TTAGTTCCTGGGAAGTACGA+AGG | + | chr7.2:89801813-89801832 | MS.gene76966:CDS | 45.0% |
| !! | TATTACTTTGGAGTAGGCGG+AGG | + | chr7.2:89803452-89803471 | MS.gene76966:CDS | 45.0% |
| !!! | GCAGAAGTTCGCTTTTTTGC+TGG | + | chr7.2:89803107-89803126 | MS.gene76966:CDS | 45.0% |
| !!! | TTCGCTTTTTTGCTGGTGAC+TGG | + | chr7.2:89803114-89803133 | MS.gene76966:CDS | 45.0% |
| !!! | ATAAAAATTTAAGTTTTAAT+CGG | + | chr7.2:89801510-89801529 | MS.gene76966:intron | 5.0% |
| ACTTCAACACAAGGAGGTGG+AGG | - | chr7.2:89801017-89801036 | None:intergenic | 50.0% | |
| AGGTGGGCATCACTTTCTTC+AGG | + | chr7.2:89802202-89802221 | MS.gene76966:intron | 50.0% | |
| CAATCACCTTCGTACTTCCC+AGG | - | chr7.2:89801822-89801841 | None:intergenic | 50.0% | |
| CCGCGCGGAAAATAGTGTTA+TGG | - | chr7.2:89803880-89803899 | None:intergenic | 50.0% | |
| GCCATGTACACAACTCCATG+AGG | - | chr7.2:89803422-89803441 | None:intergenic | 50.0% | |
| GTTTAGGAGGACTGAAGCTG+TGG | + | chr7.2:89802097-89802116 | MS.gene76966:intron | 50.0% | |
| TGGAAGTCGTACATGGCTGA+TGG | + | chr7.2:89804219-89804238 | MS.gene76966:intron | 50.0% | |
| TGTCTGGCATGGCATCATCA+TGG | + | chr7.2:89801555-89801574 | MS.gene76966:intron | 50.0% | |
| TGTGAGACATCGTAGGACCT+CGG | - | chr7.2:89803018-89803037 | None:intergenic | 50.0% | |
| ! | AAGTGCTTGCTACGTCCTCA+TGG | + | chr7.2:89803404-89803423 | MS.gene76966:intron | 50.0% |
| ! | TTTTCCTCCTCCGTAGGTTC+TGG | + | chr7.2:89800948-89800967 | MS.gene76966:CDS | 50.0% |
| !! | ATCTACGTTGGTGGCTCCTT+TGG | + | chr7.2:89802472-89802491 | MS.gene76966:intron | 50.0% |
| !! | CAGCTATTTTCCTCCTCCGT+AGG | + | chr7.2:89800942-89800961 | MS.gene76966:CDS | 50.0% |
| !! | GTTGGTGGCTCCTTTGGATA+AGG | + | chr7.2:89802478-89802497 | MS.gene76966:intron | 50.0% |
| !! | TCCTCCGTAGGTTCTGGTTT+CGG | + | chr7.2:89800954-89800973 | MS.gene76966:CDS | 50.0% |
| AGAACTGGGCCCGTTTGGAT+TGG | - | chr7.2:89802709-89802728 | None:intergenic | 55.0% | |
| ATTCAGGTCGGATGCGGTCA+TGG | + | chr7.2:89802846-89802865 | MS.gene76966:intron | 55.0% | |
| GAAACCAGAACCTACGGAGG+AGG | - | chr7.2:89800955-89800974 | None:intergenic | 55.0% | |
| TCAAGAGAACTGGGCCCGTT+TGG | - | chr7.2:89802714-89802733 | None:intergenic | 55.0% | |
| TCCGAAACCAGAACCTACGG+AGG | - | chr7.2:89800958-89800977 | None:intergenic | 55.0% | |
| TTGGAGTAGGCGGAGGAACT+CGG | + | chr7.2:89803459-89803478 | MS.gene76966:CDS | 55.0% | |
| TTTGTCGAGCTAGACGGCGA+TGG | - | chr7.2:89803080-89803099 | None:intergenic | 55.0% | |
| GGAGGACTGAAGCTGTGGGA+AGG | + | chr7.2:89802102-89802121 | MS.gene76966:intron | 60.0% | |
| ! | GGATGCGGTCATGGACTGCC+TGG | + | chr7.2:89802855-89802874 | MS.gene76966:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.2 | gene | 89800802 | 89804515 | 89800802 | ID=MS.gene76966 |
| chr7.2 | mRNA | 89800802 | 89804515 | 89800802 | ID=MS.gene76966.t1;Parent=MS.gene76966 |
| chr7.2 | exon | 89800802 | 89800834 | 89800802 | ID=MS.gene76966.t1.exon1;Parent=MS.gene76966.t1 |
| chr7.2 | CDS | 89800802 | 89800834 | 89800802 | ID=cds.MS.gene76966.t1;Parent=MS.gene76966.t1 |
| chr7.2 | exon | 89800909 | 89801055 | 89800909 | ID=MS.gene76966.t1.exon2;Parent=MS.gene76966.t1 |
| chr7.2 | CDS | 89800909 | 89801055 | 89800909 | ID=cds.MS.gene76966.t1;Parent=MS.gene76966.t1 |
| chr7.2 | exon | 89801165 | 89801227 | 89801165 | ID=MS.gene76966.t1.exon3;Parent=MS.gene76966.t1 |
| chr7.2 | CDS | 89801165 | 89801227 | 89801165 | ID=cds.MS.gene76966.t1;Parent=MS.gene76966.t1 |
| chr7.2 | exon | 89801768 | 89801834 | 89801768 | ID=MS.gene76966.t1.exon4;Parent=MS.gene76966.t1 |
| chr7.2 | CDS | 89801768 | 89801834 | 89801768 | ID=cds.MS.gene76966.t1;Parent=MS.gene76966.t1 |
| chr7.2 | exon | 89802103 | 89802203 | 89802103 | ID=MS.gene76966.t1.exon5;Parent=MS.gene76966.t1 |
| chr7.2 | CDS | 89802103 | 89802203 | 89802103 | ID=cds.MS.gene76966.t1;Parent=MS.gene76966.t1 |
| chr7.2 | exon | 89802852 | 89802896 | 89802852 | ID=MS.gene76966.t1.exon6;Parent=MS.gene76966.t1 |
| chr7.2 | CDS | 89802852 | 89802896 | 89802852 | ID=cds.MS.gene76966.t1;Parent=MS.gene76966.t1 |
| chr7.2 | exon | 89802981 | 89803274 | 89802981 | ID=MS.gene76966.t1.exon7;Parent=MS.gene76966.t1 |
| chr7.2 | CDS | 89802981 | 89803274 | 89802981 | ID=cds.MS.gene76966.t1;Parent=MS.gene76966.t1 |
| chr7.2 | exon | 89803407 | 89803509 | 89803407 | ID=MS.gene76966.t1.exon8;Parent=MS.gene76966.t1 |
| chr7.2 | CDS | 89803407 | 89803509 | 89803407 | ID=cds.MS.gene76966.t1;Parent=MS.gene76966.t1 |
| chr7.2 | exon | 89804433 | 89804515 | 89804433 | ID=MS.gene76966.t1.exon9;Parent=MS.gene76966.t1 |
| chr7.2 | CDS | 89804433 | 89804515 | 89804433 | ID=cds.MS.gene76966.t1;Parent=MS.gene76966.t1 |
| Gene Sequence |
| Protein sequence |
