AlfalfaGEDB | MS.gene76966

M. sativa cultivar XinJiangDaYe / MS.gene76966

KEGG: -
GO: -
PFAM: PF10294.12

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene76966.t1	XP_013447514.1	95.8	311	13	0	1	311	1	311	3.00E-169	604.4

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene76966.t1	Q55DL2	44.5	220	94	6	92	311	116	307	3.0e-40	167.2

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene76966.t1	I3S9D2	95.8	311	13	0	1	311	1	311	2.2e-169	604.4

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene057060	MS.gene76966	0.812585	3.94E-51	-1.69E-46
MS.gene058216	MS.gene76966	0.818722	1.69E-52	-1.69E-46
MS.gene060429	MS.gene76966	0.817665	2.93E-52	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene76966.t1	MTR_7g008030	95.820	311	13	0	1	311	1	311	0.0	612
MS.gene76966.t1	MTR_2g098630	34.056	323	139	9	50	311	37	346	6.68e-51	172
MS.gene76966.t1	MTR_2g098630	34.056	323	139	9	50	311	53	362	8.70e-51	172
MS.gene76966.t1	MTR_2g098630	33.636	220	79	7	153	311	43	256	4.15e-28	109

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene76966.t1	AT4G14000	61.074	298	107	3	14	311	2	290	2.66e-115	335
MS.gene76966.t1	AT2G43320	37.117	326	136	9	48	311	33	351	6.21e-61	198
MS.gene76966.t1	AT2G43320	37.117	326	136	9	48	311	33	351	6.21e-61	198

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Find 61 sgRNAs with CRISPR-Local

Find 203 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTCAGAGTGTGATTCTA+AGG	0.361676	7.2:+89800813	MS.gene76966:CDS
AACTCGGAGATTTCTATCTG+TGG	0.630180	7.2:+89803475	MS.gene76966:CDS
AAGAAGTATTACTTTGGAGT+AGG	0.526620	7.2:+89803446	MS.gene76966:CDS
AAGTATTACTTTGGAGTAGG+CGG	0.584131	7.2:+89803449	MS.gene76966:CDS
AAGTGCTTGCTACGTCCTCA+TGG	0.525563	7.2:+89803404	MS.gene76966:intron
AATATAAATGCCAATGTTTC+TGG	0.219315	7.2:+89803044	MS.gene76966:CDS
ACAAGAACTTCAACACAAGG+AGG	0.724215	7.2:-89801020	None:intergenic
ACAGATGCAAAACACAATGA+AGG	0.576866	7.2:+89803170	MS.gene76966:CDS
ACTTCAACACAAGGAGGTGG+AGG	0.612980	7.2:-89801014	None:intergenic
AGAAACATTGGCATTTATAT+TGG	0.194429	7.2:-89803042	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAATAAGCCAATCCAAAC+GGG	+	chr7.2:89802697-89802716	MS.gene76966:intron	30.0%
AATTTCAGAACTCAAAATGG+TGG	-	chr7.2:89801292-89801311	None:intergenic	30.0%
ACTGATCCATGTAATTATAC+CGG	+	chr7.2:89803985-89804004	MS.gene76966:intron	30.0%
ACTTATTTGAGCTTATCTAC+TGG	+	chr7.2:89802372-89802391	MS.gene76966:intron	30.0%
AGCTGAAATGTTTCGAAATT+CGG	-	chr7.2:89800927-89800946	None:intergenic	30.0%
AGTGAGCTTATTTCATTTAG+TGG	+	chr7.2:89802165-89802184	MS.gene76966:CDS	30.0%
ATCAGAGGTAAATTCTTGTT+TGG	+	chr7.2:89801049-89801068	MS.gene76966:intron	30.0%
ATTAACACACCTTTAGTCTA+TGG	+	chr7.2:89802018-89802037	MS.gene76966:intron	30.0%
ATTACATGGATCAGTGATTT+AGG	-	chr7.2:89803980-89803999	None:intergenic	30.0%
ATTCGTTAAACATAATGCTG+AGG	+	chr7.2:89801173-89801192	MS.gene76966:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.2	gene	89800802	89804515	89800802	ID=MS.gene76966
chr7.2	mRNA	89800802	89804515	89800802	ID=MS.gene76966.t1;Parent=MS.gene76966
chr7.2	exon	89800802	89800834	89800802	ID=MS.gene76966.t1.exon1;Parent=MS.gene76966.t1
chr7.2	CDS	89800802	89800834	89800802	ID=cds.MS.gene76966.t1;Parent=MS.gene76966.t1
chr7.2	exon	89800909	89801055	89800909	ID=MS.gene76966.t1.exon2;Parent=MS.gene76966.t1
chr7.2	CDS	89800909	89801055	89800909	ID=cds.MS.gene76966.t1;Parent=MS.gene76966.t1
chr7.2	exon	89801165	89801227	89801165	ID=MS.gene76966.t1.exon3;Parent=MS.gene76966.t1
chr7.2	CDS	89801165	89801227	89801165	ID=cds.MS.gene76966.t1;Parent=MS.gene76966.t1
chr7.2	exon	89801768	89801834	89801768	ID=MS.gene76966.t1.exon4;Parent=MS.gene76966.t1
chr7.2	CDS	89801768	89801834	89801768	ID=cds.MS.gene76966.t1;Parent=MS.gene76966.t1
chr7.2	exon	89802103	89802203	89802103	ID=MS.gene76966.t1.exon5;Parent=MS.gene76966.t1
chr7.2	CDS	89802103	89802203	89802103	ID=cds.MS.gene76966.t1;Parent=MS.gene76966.t1
chr7.2	exon	89802852	89802896	89802852	ID=MS.gene76966.t1.exon6;Parent=MS.gene76966.t1
chr7.2	CDS	89802852	89802896	89802852	ID=cds.MS.gene76966.t1;Parent=MS.gene76966.t1
chr7.2	exon	89802981	89803274	89802981	ID=MS.gene76966.t1.exon7;Parent=MS.gene76966.t1
chr7.2	CDS	89802981	89803274	89802981	ID=cds.MS.gene76966.t1;Parent=MS.gene76966.t1
chr7.2	exon	89803407	89803509	89803407	ID=MS.gene76966.t1.exon8;Parent=MS.gene76966.t1
chr7.2	CDS	89803407	89803509	89803407	ID=cds.MS.gene76966.t1;Parent=MS.gene76966.t1
chr7.2	exon	89804433	89804515	89804433	ID=MS.gene76966.t1.exon9;Parent=MS.gene76966.t1
chr7.2	CDS	89804433	89804515	89804433	ID=cds.MS.gene76966.t1;Parent=MS.gene76966.t1

Gene Sequence

>MS.gene76966

ATGGCGGCTACAAACTCAGAGTGTGATTCTAAGGTTAATTTCAATTTTTAAATTTTCTTCTTAATTTTTCTCTTATCAATTAACGGTTTTAAATTTTGTTTTCACAGAAAAATGCAGAGAAACCGAATTTCGAAACATTTCAGCTATTTTCCTCCTCCGTAGGTTCTGGTTTCGGAATATTTGATGATGTTTCACAACAAGTTAATGCTATACCTCCACCTCCTTGTGTTGAAGTTCTTGTTTCTGAATCAGAGGTAAATTCTTGTTTGGTTGTTTTCACTGTTAATCATTGTTTTAATTGAAACTATGTTGTTTTTGAAACAGTGTTTTTTTGTTGTTGTTTTGTTGGATTGTTGAAATTAGGTTCCTTTATTCGTTAAACATAATGCTGAGGAAGTAAATTTTGATGGGGTTACTTTGTTTAAGGTAAAGTTTGTTTCTTTTTGTTTTTCATATTCTTATTCTCATGATACTAGAATAGAGTAAACCACCATTTTGAGTTCTGAAATTGTAAGTGTAAGTCAAAATGTTAACTCTGTCAAGTAGCTCTTTTAGAGATGCCGTTGTGTCGCGTTAAATGCAACATGGCTTGTATAAGTAGATGTGATGTCACATGGAACGCGTCGATGCCATGCCACACGAAATTCTAAACACAAGTTTCATACCGGTTAAAAACTTAATTTTTATGATGATGGAAGTCCAATTTGCATAAAAATTTAAGTTTTAATCGGTATGAAACTTGTGTTTAGGATATGTCTGGCATGGCATCATCATGGAGAAGCCAAAGTGTCATTTAACATGACATGTCATCACCCCCAAATGAGTTAAATGACAGAGAGCATTTTGATTGACAAAAAACAATTTTAGGGAGCAATTTGATATTTCGTATATTTGGGGTTCCAAATTTATTATTCATATTATCAATTATTATTTTGATAATAGCTTAGTTTTATCACATTCTTGTAGGGACGGGTGAATACTCAACAAGTTTTTGGTTTATCCAACTCTGATTTAGTTCCTGGGAAGTACGAAGGTGATTGTATTTTGCTCCTTGCATTTCTATCTATGAAGCAAACACACTCAACATGACATGTCTTTAGTATGAAATGTCAGTTCTATATAGATTTCTATTTGTTTGTGTACTCATTCATTTCAATATTGTTGATGACATATGAAAGTACCAACATAAACATGTATTCTGAAAACAACACCAGACATTAACACACCTTTAGTCTATGGTACTGATGCTACGTAGTTGATGACTACTAAATCAGTTGCAACTTTGGTTTCCTTTGGTTTAGGAGGACTGAAGCTGTGGGAAGGTTCAAATGATCTAATTAAAGCCCTTCGTTCAGATATCAAAAGTGAGCTTATTTCATTTAGTGGGAAACGAGTATTAGAGGTGGGCATCACTTTCTTCAGGTGATTCTGTGATCTACTGTATTCATTATCTGTTTTACTGTCTATTACTTGCTTAGTAGACTAACACAAACTAGCTTAGAAAAGCTTGTGTCATTTGATATACAATTGAATAAGAGGATATACTCAAAGCTAGGGTTTGTTTGGATTGACTTATTTGAGCTTATCTACTGGCATAATCACTTGTGAGATTGCTTGGGAGAACTTATGCAAACAAGTTATGACATATGGCCATAAGCTGTTTTTAGTTGATCTACGTTGGTGGCTCCTTTGGATAAGGCTTTTTTTGAGCTTATACAAAATAGCTTATGCAAATAAATGAGTTTTTTTTTTTTTTTTTTTTTTTTTGTATCATTTATAAGCTTGTCAATATAGTTTATGAAAAAAAATGTTACAAAGATAAAATTTTCGTTAGTGAAAAGTTATAAATTAACATAAAATCTTATTTATTTGCATAAGCCATTTTTCATAAGCTCAAAAATAAGCCAATCCAAACGGGCCCAGTTCTCTTGAATAACTTATGAAAATAGCTTATACTAGTTTATATGGCTTTGACTTTATTTCATCATTTGTTATAGAAATAGCTTATTCTTCTATCACAATATAATTTAGTTTCAAATATTTGATTCAGGTCGGATGCGGTCATGGACTGCCTGGAATCTATGCTTTGCTTGAGGTGAAACTATGTTTTATTGGCTTTGCTTTGGTATCTTCAATTAAATTTGAAAAATGTAATGATGTGTTTACTATGGTTGATTAGGGGGCGGCTGCTGTTCATTTTCAAGACTTCAATGCCGAGGTCCTACGATGTCTCACAATTCCCAATATAAATGCCAATGTTTCTGGAGGATCGCAACCATCGCCGTCTAGCTCGACAAATGACAAGGCAGAAGTTCGCTTTTTTGCTGGTGACTGGAGTGATGTCGATAAACTGCTCCCTCATGTTGGTACAGATGCAAAACACAATGAAGGTTCTGGTTATGATTTTATTCTCATGGCGGAGACAGTTTACTCAATCAACAGTCTTCAAAATCTATACAATCTAATCAAGAAGGTATGTTTTGATTATTGAGCCAGTAATTGCAATTTTGCAATGTGTAGAGTATATTTATCTTGTATGTATTTATGTGCATCTTTGCTGATAAAAATATTGGTTTTCTTACATATTGAACTGTTTGATACAAAGTGCTTGCTACGTCCTCATGGAGTTGTGTACATGGCTGCAAAGAAGTATTACTTTGGAGTAGGCGGAGGAACTCGGAGATTTCTATCTGTGGTGGAAGAAGATGGTGAGATAGTATTGATATATGCAAAAGGATTATGATTTTGAATCTTTGTATGTTATGTGTTTTGTAGCTGCATCATAAAAATTAAGTAGTTTCGTTGATACGGGAACAATTTGCAATAGTTACAGTGATCTTGCAATCTATTGATTTCAGTGTTGTCAAATAGCAGCTACAGCGCTATAATATAGCAGAATTTAACAAACCGCTATTGTTACACGTTACGGAATTTAGTATAAAGTGTTGTCAAGTAACTGTTATAGCACTATAGTATAGTTAGAATTTTAACCGACCAATATTGTTGTGCGTTTCACAATTTAGTACAGAGTATTGTCAAATAGCGGCTATAGCATTGTAGCATAGCAGAATTTTACCATAACACTATTTTCCGCGCGGTTGACAACATTGATTGATTTCCTACTATACTATGGTTGCCATGCACATACACCGATATATGAAGGACTCATTTGGAACCTAAATCACTGATCCATGTAATTATACCGGCCAAACATTATGAATTTTTTTTTGGTCTCATTATACAGTTTTAACTATCAAGGATATGATGCAATCCTCACAGGATATTATTAGATATTTCTATGGCACTAGCATTGTTTGACCGTATTATTTATCAATCTGGGCGAAGTTGCATTTTTTAAATCAAAATGGGGGTAAGTAATTAAGTATACACACAACATGTGACTTCAATTTTTTCTTATGGAAGTCGTACATGGCTGATGGCATTGTCGGCTTCGCATTTTTTTTCTAATTTTTTGTTTTTAAATATATCGATACTGCACATGCCATTTGCGACTTTAAGAAAGCCGTACTTGGGAATGGTGACATTATTATAGTGATCTATTTCTCTTCCCTACCAGTTAGTACTTTAGTATATGCTAGTGTCATGTCATAACAGTGCTTTATATGTGCAGGCATCTTGACTAGTAACATGGTTGCCGAAATCACAGATGGTTCATCTAATGTGCGTGAAGTATGGAAGCTTTCATTCAAGTAG

Protein sequence

>MS.gene76966.t1

MAATNSECDSKKNAEKPNFETFQLFSSSVGSGFGIFDDVSQQVNAIPPPPCVEVLVSESEVPLFVKHNAEEVNFDGVTLFKGRVNTQQVFGLSNSDLVPGKYEGGLKLWEGSNDLIKALRSDIKSELISFSGKRVLEVGCGHGLPGIYALLEGAAAVHFQDFNAEVLRCLTIPNINANVSGGSQPSPSSSTNDKAEVRFFAGDWSDVDKLLPHVGTDAKHNEGSGYDFILMAETVYSINSLQNLYNLIKKCLLRPHGVVYMAAKKYYFGVGGGTRRFLSVVEEDGILTSNMVAEITDGSSNVREVWKLSFK