Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058216.t1 | XP_003594777.1 | 100 | 114 | 0 | 0 | 1 | 114 | 1 | 114 | 6.30E-64 | 253.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058216.t1 | Q6NLH0 | 88.6 | 114 | 13 | 0 | 1 | 114 | 1 | 114 | 6.2e-60 | 231.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058216.t1 | Q2HU21 | 100.0 | 114 | 0 | 0 | 1 | 114 | 1 | 114 | 4.6e-64 | 253.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050020 | MS.gene058216 | 0.800171 | 1.63E-48 | -1.69E-46 |
| MS.gene050807 | MS.gene058216 | 0.803858 | 2.85E-49 | -1.69E-46 |
| MS.gene052133 | MS.gene058216 | 0.829448 | 5.12E-55 | -1.69E-46 |
| MS.gene053195 | MS.gene058216 | 0.80866 | 2.78E-50 | -1.69E-46 |
| MS.gene053563 | MS.gene058216 | 0.800155 | 1.65E-48 | -1.69E-46 |
| MS.gene057060 | MS.gene058216 | 0.807454 | 5.01E-50 | -1.69E-46 |
| MS.gene057314 | MS.gene058216 | 0.803554 | 3.30E-49 | -1.69E-46 |
| MS.gene057705 | MS.gene058216 | 0.801885 | 7.29E-49 | -1.69E-46 |
| MS.gene058216 | MS.gene060429 | 0.814108 | 1.82E-51 | -1.69E-46 |
| MS.gene058216 | MS.gene06236 | 0.81118 | 7.97E-51 | -1.69E-46 |
| MS.gene058216 | MS.gene062743 | 0.812917 | 3.33E-51 | -1.69E-46 |
| MS.gene058216 | MS.gene063086 | 0.803839 | 2.88E-49 | -1.69E-46 |
| MS.gene058216 | MS.gene064944 | 0.802018 | 6.84E-49 | -1.69E-46 |
| MS.gene058216 | MS.gene066105 | 0.821561 | 3.78E-53 | -1.69E-46 |
| MS.gene058216 | MS.gene067521 | 0.812203 | 4.77E-51 | -1.69E-46 |
| MS.gene058216 | MS.gene068004 | 0.800661 | 1.30E-48 | -1.69E-46 |
| MS.gene058216 | MS.gene068006 | 0.80759 | 4.69E-50 | -1.69E-46 |
| MS.gene058216 | MS.gene070943 | 0.803975 | 2.70E-49 | -1.69E-46 |
| MS.gene058216 | MS.gene071570 | 0.80068 | 1.29E-48 | -1.69E-46 |
| MS.gene058216 | MS.gene071960 | 0.800115 | 1.68E-48 | -1.69E-46 |
| MS.gene058216 | MS.gene07222 | 0.80567 | 1.19E-49 | -1.69E-46 |
| MS.gene058216 | MS.gene073785 | 0.80924 | 2.09E-50 | -1.69E-46 |
| MS.gene058216 | MS.gene20740 | 0.812335 | 4.46E-51 | -1.69E-46 |
| MS.gene058216 | MS.gene22974 | 0.806804 | 6.89E-50 | -1.69E-46 |
| MS.gene058216 | MS.gene23105 | 0.806113 | 9.63E-50 | -1.69E-46 |
| MS.gene058216 | MS.gene23988 | 0.828619 | 8.13E-55 | -1.69E-46 |
| MS.gene058216 | MS.gene24623 | 0.804433 | 2.16E-49 | -1.69E-46 |
| MS.gene058216 | MS.gene24628 | 0.803272 | 3.77E-49 | -1.69E-46 |
| MS.gene058216 | MS.gene29576 | 0.815311 | 9.86E-52 | -1.69E-46 |
| MS.gene058216 | MS.gene29807 | 0.804014 | 2.65E-49 | -1.69E-46 |
| MS.gene058216 | MS.gene30945 | 0.809507 | 1.83E-50 | -1.69E-46 |
| MS.gene058216 | MS.gene30946 | 0.810821 | 9.53E-51 | -1.69E-46 |
| MS.gene058216 | MS.gene35135 | 0.806478 | 8.07E-50 | -1.69E-46 |
| MS.gene058216 | MS.gene36046 | 0.806031 | 1.00E-49 | -1.69E-46 |
| MS.gene058216 | MS.gene40595 | 0.830107 | 3.54E-55 | -1.69E-46 |
| MS.gene058216 | MS.gene40648 | 0.802395 | 5.73E-49 | -1.69E-46 |
| MS.gene058216 | MS.gene44141 | 0.809783 | 1.60E-50 | -1.69E-46 |
| MS.gene058216 | MS.gene44256 | 0.803491 | 3.40E-49 | -1.69E-46 |
| MS.gene058216 | MS.gene45479 | 0.814089 | 1.84E-51 | -1.69E-46 |
| MS.gene058216 | MS.gene48701 | 0.801749 | 7.78E-49 | -1.69E-46 |
| MS.gene058216 | MS.gene49359 | 0.83291 | 7.22E-56 | -1.69E-46 |
| MS.gene058216 | MS.gene50564 | 0.803032 | 4.23E-49 | -1.69E-46 |
| MS.gene058216 | MS.gene51106 | -0.811337 | 7.36E-51 | -1.69E-46 |
| MS.gene058216 | MS.gene52075 | 0.814368 | 1.60E-51 | -1.69E-46 |
| MS.gene058216 | MS.gene53586 | 0.802455 | 5.57E-49 | -1.69E-46 |
| MS.gene058216 | MS.gene55732 | 0.801314 | 9.55E-49 | -1.69E-46 |
| MS.gene058216 | MS.gene56067 | 0.809313 | 2.01E-50 | -1.69E-46 |
| MS.gene058216 | MS.gene62563 | 0.80168 | 8.03E-49 | -1.69E-46 |
| MS.gene058216 | MS.gene64249 | 0.806377 | 8.47E-50 | -1.69E-46 |
| MS.gene058216 | MS.gene66973 | 0.807865 | 4.10E-50 | -1.69E-46 |
| MS.gene058216 | MS.gene68663 | 0.808819 | 2.57E-50 | -1.69E-46 |
| MS.gene058216 | MS.gene73243 | 0.806465 | 8.12E-50 | -1.69E-46 |
| MS.gene058216 | MS.gene76118 | -0.811099 | 8.29E-51 | -1.69E-46 |
| MS.gene058216 | MS.gene76966 | 0.818722 | 1.69E-52 | -1.69E-46 |
| MS.gene058216 | MS.gene83091 | 0.802911 | 4.48E-49 | -1.69E-46 |
| MS.gene058216 | MS.gene83830 | 0.815097 | 1.10E-51 | -1.69E-46 |
| MS.gene058216 | MS.gene83996 | 0.814871 | 1.24E-51 | -1.69E-46 |
| MS.gene058216 | MS.gene89552 | 0.821846 | 3.25E-53 | -1.69E-46 |
| MS.gene058216 | MS.gene89562 | 0.833085 | 6.53E-56 | -1.69E-46 |
| MS.gene058216 | MS.gene90239 | 0.801024 | 1.09E-48 | -1.69E-46 |
| MS.gene058216 | MS.gene90649 | 0.809024 | 2.32E-50 | -1.69E-46 |
| MS.gene058216 | MS.gene90981 | 0.813673 | 2.27E-51 | -1.69E-46 |
| MS.gene058216 | MS.gene98953 | 0.80236 | 5.82E-49 | -1.69E-46 |
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058216.t1 | MTR_2g034520 | 100.000 | 114 | 0 | 0 | 1 | 114 | 1 | 114 | 2.49e-84 | 241 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058216.t1 | AT3G16980 | 88.596 | 114 | 13 | 0 | 1 | 114 | 1 | 114 | 2.12e-76 | 221 |
| MS.gene058216.t1 | AT4G16265 | 87.719 | 114 | 14 | 0 | 1 | 114 | 1 | 114 | 2.88e-76 | 221 |
| MS.gene058216.t1 | AT4G16265 | 86.538 | 104 | 14 | 0 | 11 | 114 | 30 | 133 | 2.60e-68 | 201 |
Find 23 sgRNAs with CRISPR-Local
Find 134 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTGTTCTCTGTCTTCCTT+AGG | 0.297432 | 2.4:-56192121 | None:intergenic |
| CTCCAGCGGTGTCCACAGTT+TGG | 0.327997 | 2.4:-56194462 | None:intergenic |
| TCCAGCGGTGTCCACAGTTT+GGG | 0.347521 | 2.4:-56194461 | None:intergenic |
| TGAGCGGACTCAAGTGTTGC+AGG | 0.420762 | 2.4:+56192875 | MS.gene058216:CDS |
| CCATTCACGGCAAAACTTCA+TGG | 0.428840 | 2.4:-56192006 | None:intergenic |
| TCTGTTCTCTGTCTTCCTTA+GGG | 0.436557 | 2.4:-56192120 | None:intergenic |
| GAGTAGAAACGAACCATTCA+CGG | 0.485823 | 2.4:-56192019 | None:intergenic |
| CGCTGCGTTCAATGCAATCA+TGG | 0.517046 | 2.4:+56192939 | MS.gene058216:CDS |
| TTGTCGCAATTGCGATCACC+AGG | 0.517461 | 2.4:+56192159 | MS.gene058216:CDS |
| GCCTTGGTACGAGGAAGAGT+TGG | 0.536993 | 2.4:-56192912 | None:intergenic |
| ACCCAAACTGTGGACACCGC+TGG | 0.549152 | 2.4:+56194460 | MS.gene058216:CDS |
| GCAACTGCTAGAGGCGAGGA+AGG | 0.564765 | 2.4:+56194411 | MS.gene058216:CDS |
| TTGAACGCAGCGAACAGCCT+TGG | 0.566027 | 2.4:-56192928 | None:intergenic |
| TCCAACTCTTCCTCGTACCA+AGG | 0.567360 | 2.4:+56192911 | MS.gene058216:CDS |
| CGCAATTGCGACAAGCGTAG+AGG | 0.568460 | 2.4:-56192150 | None:intergenic |
| TAACAACATTCTGTACCCTA+AGG | 0.599627 | 2.4:+56192105 | MS.gene058216:CDS |
| GTTTGCTGCAACCCAAACTG+TGG | 0.602356 | 2.4:+56194450 | MS.gene058216:CDS |
| CATATGCAGGCAACTGCTAG+AGG | 0.615188 | 2.4:+56194402 | MS.gene058216:intron |
| CAGCGAACAGCCTTGGTACG+AGG | 0.631085 | 2.4:-56192921 | None:intergenic |
| GCAGGCAACTGCTAGAGGCG+AGG | 0.653952 | 2.4:+56194407 | MS.gene058216:intron |
| TTCACCACTCTGTTGCTGAG+CGG | 0.687981 | 2.4:+56192859 | MS.gene058216:CDS |
| GAGTCCGCTCAGCAACAGAG+TGG | 0.694701 | 2.4:-56192863 | None:intergenic |
| ACAAAACTCAGTCTCTCCAG+CGG | 0.698214 | 2.4:-56194476 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTATATTTTCTTTTTAG+TGG | + | chr2.4:56193780-56193799 | MS.gene058216:intron | 10.0% |
| !! | ATAAAAAAAAAATGGGTAAA+AGG | - | chr2.4:56192059-56192078 | None:intergenic | 15.0% |
| !! | TAAAAAAAAAATGGGTAAAA+GGG | - | chr2.4:56192058-56192077 | None:intergenic | 15.0% |
| !!! | TTCCTTTTTTTTTTTTTTTG+TGG | - | chr2.4:56194075-56194094 | None:intergenic | 15.0% |
| !! | AAACCTTATTCTATTACTTA+TGG | + | chr2.4:56194358-56194377 | MS.gene058216:intron | 20.0% |
| !! | AATAAGCTGAAAGTAATTTA+TGG | + | chr2.4:56192642-56192661 | MS.gene058216:intron | 20.0% |
| !! | AATTAGGGTTTAACAAAATA+TGG | + | chr2.4:56192400-56192419 | MS.gene058216:intron | 20.0% |
| !! | AATTCCAATATGAATTGTTT+AGG | + | chr2.4:56193432-56193451 | MS.gene058216:intron | 20.0% |
| !! | ATTAGGGTTTAACAAAATAT+GGG | + | chr2.4:56192401-56192420 | MS.gene058216:intron | 20.0% |
| !! | ATTCCAATATGAATTGTTTA+GGG | + | chr2.4:56193433-56193452 | MS.gene058216:intron | 20.0% |
| !! | CACCACAAAAAAAAAAAAAA+AGG | + | chr2.4:56194070-56194089 | MS.gene058216:intron | 20.0% |
| !!! | AATTTTTTATATGCATATGC+AGG | + | chr2.4:56194389-56194408 | MS.gene058216:intron | 20.0% |
| !!! | CATTATTAGCTTATTTTAAG+TGG | + | chr2.4:56192305-56192324 | MS.gene058216:intron | 20.0% |
| !!! | CTTGAGTTTTATATATTTTG+TGG | + | chr2.4:56193134-56193153 | MS.gene058216:intron | 20.0% |
| !!! | GTGTTTTCATAAAATTATTG+TGG | + | chr2.4:56192607-56192626 | MS.gene058216:intron | 20.0% |
| !!! | TATTGTCTTTATCTTGTTTT+TGG | + | chr2.4:56193635-56193654 | MS.gene058216:intron | 20.0% |
| !!! | TTGATTTTTAGAAGTTTTGA+AGG | + | chr2.4:56193037-56193056 | MS.gene058216:intron | 20.0% |
| !!! | TTGTTTTTTGTTTGTTTTGA+AGG | + | chr2.4:56192432-56192451 | MS.gene058216:intron | 20.0% |
| !!! | TTTTATACACAGTAATGATT+CGG | - | chr2.4:56192202-56192221 | None:intergenic | 20.0% |
| ! | AAAAATGCATTCATAAGAGT+AGG | - | chr2.4:56194310-56194329 | None:intergenic | 25.0% |
| ! | AAAATGCATTCATAAGAGTA+GGG | - | chr2.4:56194309-56194328 | None:intergenic | 25.0% |
| ! | AAATTATTGTGGATAGCTTA+TGG | + | chr2.4:56192618-56192637 | MS.gene058216:intron | 25.0% |
| ! | AACAAGCATATGTCATATAA+AGG | - | chr2.4:56192759-56192778 | None:intergenic | 25.0% |
| ! | ACAAGATAAAGACAATAGAA+AGG | - | chr2.4:56193632-56193651 | None:intergenic | 25.0% |
| ! | AGAATGAGTTTACAACATAT+AGG | - | chr2.4:56193973-56193992 | None:intergenic | 25.0% |
| ! | CAAACTCAAAAAACAGAAAA+TGG | - | chr2.4:56192230-56192249 | None:intergenic | 25.0% |
| ! | GATCCATAAGTAATAGAATA+AGG | - | chr2.4:56194364-56194383 | None:intergenic | 25.0% |
| ! | TAACCCTAAACAATTCATAT+TGG | - | chr2.4:56193439-56193458 | None:intergenic | 25.0% |
| ! | TTTATACACAGTAATGATTC+GGG | - | chr2.4:56192201-56192220 | None:intergenic | 25.0% |
| !! | TTGTTTAACTTAAGCTTTGT+TGG | + | chr2.4:56192488-56192507 | MS.gene058216:intron | 25.0% |
| !! | TTTTCATGTTAAGTGATAAG+TGG | + | chr2.4:56193273-56193292 | MS.gene058216:intron | 25.0% |
| !!! | AAGAAACGTATATGTTTTGA+AGG | + | chr2.4:56193244-56193263 | MS.gene058216:intron | 25.0% |
| !!! | ACAAGTTTTTTTTTTCCTTG+TGG | + | chr2.4:56192329-56192348 | MS.gene058216:intron | 25.0% |
| !!! | ATAAGCTACTTTTTAACGAA+AGG | + | chr2.4:56192569-56192588 | MS.gene058216:intron | 25.0% |
| !!! | ATTTCTTCATTGCTTTTGAA+AGG | - | chr2.4:56194276-56194295 | None:intergenic | 25.0% |
| !!! | ATTTTGACTTTAAAGTAGAG+TGG | + | chr2.4:56193077-56193096 | MS.gene058216:intron | 25.0% |
| !!! | ATTTTTAGCAAATATCAAGC+AGG | + | chr2.4:56194324-56194343 | MS.gene058216:intron | 25.0% |
| !!! | CAAGTTTTTTTTTTCCTTGT+GGG | + | chr2.4:56192330-56192349 | MS.gene058216:intron | 25.0% |
| !!! | TGTTTAACTTAAGCTTTGTT+GGG | + | chr2.4:56192489-56192508 | MS.gene058216:intron | 25.0% |
| !!! | TTATACAAAAGCACTTACAT+GGG | - | chr2.4:56192553-56192572 | None:intergenic | 25.0% |
| !!! | TTTCTTCATTGCTTTTGAAA+GGG | - | chr2.4:56194275-56194294 | None:intergenic | 25.0% |
| !!! | TTTTTTGTTTGTTTTGAAGG+TGG | + | chr2.4:56192435-56192454 | MS.gene058216:intron | 25.0% |
| AAAAGTAATGTGGATATGTC+AGG | + | chr2.4:56194199-56194218 | MS.gene058216:intron | 30.0% | |
| AAGTTATAGAGGGTTTATGA+AGG | + | chr2.4:56192357-56192376 | MS.gene058216:intron | 30.0% | |
| AGTTATAGAGGGTTTATGAA+GGG | + | chr2.4:56192358-56192377 | MS.gene058216:intron | 30.0% | |
| ATTCACTTCTTCAGAAACTA+AGG | - | chr2.4:56193207-56193226 | None:intergenic | 30.0% | |
| CATAGTAGGTAAGCTTAAAT+AGG | + | chr2.4:56192719-56192738 | MS.gene058216:intron | 30.0% | |
| GAATATACGAAGGTTTCATA+GGG | + | chr2.4:56193843-56193862 | MS.gene058216:intron | 30.0% | |
| GGATAAGTAGCTTAATTAAG+TGG | + | chr2.4:56192510-56192529 | MS.gene058216:intron | 30.0% | |
| GTATCTCTCATATGTTGAAT+AGG | + | chr2.4:56193993-56194012 | MS.gene058216:intron | 30.0% | |
| TAGCGTAAATGAATATACGA+AGG | + | chr2.4:56193833-56193852 | MS.gene058216:intron | 30.0% | |
| TCACAAGTAGTTATCATAGT+AGG | + | chr2.4:56192705-56192724 | MS.gene058216:intron | 30.0% | |
| TGAATATACGAAGGTTTCAT+AGG | + | chr2.4:56193842-56193861 | MS.gene058216:intron | 30.0% | |
| TGCTATAATCTACAACATTC+AGG | - | chr2.4:56193337-56193356 | None:intergenic | 30.0% | |
| TTAAATAGGACAATCCAAAC+AGG | + | chr2.4:56192733-56192752 | MS.gene058216:intron | 30.0% | |
| TTCACTTCTTCAGAAACTAA+GGG | - | chr2.4:56193206-56193225 | None:intergenic | 30.0% | |
| TTTGTGGTGAAGAACTAATT+TGG | - | chr2.4:56194059-56194078 | None:intergenic | 30.0% | |
| ! | ATGTTGAATAGGTAACGTTT+TGG | + | chr2.4:56194004-56194023 | MS.gene058216:intron | 30.0% |
| ! | TTGTTTGACTAGTTGTTTAC+TGG | + | chr2.4:56192774-56192793 | MS.gene058216:intron | 30.0% |
| ! | TTTAGGGTTATAAAGTGTCT+CGG | + | chr2.4:56193449-56193468 | MS.gene058216:intron | 30.0% |
| !! | AGATGCATTATGTTTTTGTG+CGG | + | chr2.4:56193488-56193507 | MS.gene058216:intron | 30.0% |
| !! | ATATCCACATTACTTTTAGC+GGG | - | chr2.4:56194196-56194215 | None:intergenic | 30.0% |
| !! | CATATCCACATTACTTTTAG+CGG | - | chr2.4:56194197-56194216 | None:intergenic | 30.0% |
| !! | CTTATACAAAAGCACTTACA+TGG | - | chr2.4:56192554-56192573 | None:intergenic | 30.0% |
| !! | TTCTTCATTGCTTTTGAAAG+GGG | - | chr2.4:56194274-56194293 | None:intergenic | 30.0% |
| !! | TTTTGAAGGTGGTGTTAAAA+AGG | + | chr2.4:56192446-56192465 | MS.gene058216:intron | 30.0% |
| !!! | TGTTGTTGTTTTTGTTGTTC+AGG | + | chr2.4:56192800-56192819 | MS.gene058216:intron | 30.0% |
| AATCTCCATTGTAGTGTTCA+TGG | + | chr2.4:56193728-56193747 | MS.gene058216:intron | 35.0% | |
| AGAAATGTCATTGAGCAACT+TGG | - | chr2.4:56194129-56194148 | None:intergenic | 35.0% | |
| AGAAGTGAATCGTAGAAAGA+AGG | + | chr2.4:56193217-56193236 | MS.gene058216:intron | 35.0% | |
| ATGACTATTGCATAGATGCT+AGG | + | chr2.4:56193566-56193585 | MS.gene058216:intron | 35.0% | |
| ATGTCATATAAAGGCCTGTT+TGG | - | chr2.4:56192750-56192769 | None:intergenic | 35.0% | |
| ATTGTAGTGTTCATGGTTCT+AGG | + | chr2.4:56193735-56193754 | MS.gene058216:intron | 35.0% | |
| CAGGTAAAGTTTCTGTTCTA+TGG | + | chr2.4:56192978-56192997 | MS.gene058216:intron | 35.0% | |
| CATAGAACAGAAACTTTACC+TGG | - | chr2.4:56192980-56192999 | None:intergenic | 35.0% | |
| GGAAATTGAAATAACGAACC+TGG | - | chr2.4:56192180-56192199 | None:intergenic | 35.0% | |
| TAACAACATTCTGTACCCTA+AGG | + | chr2.4:56192105-56192124 | MS.gene058216:CDS | 35.0% | |
| TAACTACTTGTGAAACAGCT+TGG | - | chr2.4:56192698-56192717 | None:intergenic | 35.0% | |
| TAGAACCATGAACACTACAA+TGG | - | chr2.4:56193736-56193755 | None:intergenic | 35.0% | |
| TCTATAACTTACAACCCACA+AGG | - | chr2.4:56192347-56192366 | None:intergenic | 35.0% | |
| TGTGTATAGCGAGTGAATAA+AGG | - | chr2.4:56194161-56194180 | None:intergenic | 35.0% | |
| ! | ATTTAAAGCTGAACTTGTGG+TGG | - | chr2.4:56193695-56193714 | None:intergenic | 35.0% |
| ! | GTAGAGTCGTAGGAATTTTA+AGG | + | chr2.4:56193099-56193118 | MS.gene058216:intron | 35.0% |
| ! | TGTGGGTTGTAAGTTATAGA+GGG | + | chr2.4:56192347-56192366 | MS.gene058216:intron | 35.0% |
| ! | TTGTGGGTTGTAAGTTATAG+AGG | + | chr2.4:56192346-56192365 | MS.gene058216:intron | 35.0% |
| !! | AATCTACAACATTCAGGTTG+TGG | - | chr2.4:56193331-56193350 | None:intergenic | 35.0% |
| !! | ATCTACAACATTCAGGTTGT+GGG | - | chr2.4:56193330-56193349 | None:intergenic | 35.0% |
| !!! | TAGAAGTTTTGAAGGAAGAG+AGG | + | chr2.4:56193045-56193064 | MS.gene058216:intron | 35.0% |
| !!! | TGTTGTTTTTGTTGTTCAGG+AGG | + | chr2.4:56192803-56192822 | MS.gene058216:intron | 35.0% |
| AAACAGCTTGGAAGAGCTTA+TGG | - | chr2.4:56192686-56192705 | None:intergenic | 40.0% | |
| ACTATTGCATAGATGCTAGG+AGG | + | chr2.4:56193569-56193588 | MS.gene058216:intron | 40.0% | |
| GAGTAGAAACGAACCATTCA+CGG | - | chr2.4:56192022-56192041 | None:intergenic | 40.0% | |
| GGGAGTGAAAGTAGAAAGAT+TGG | - | chr2.4:56193186-56193205 | None:intergenic | 40.0% | |
| GTAATGTGGATATGTCAGGT+AGG | + | chr2.4:56194203-56194222 | MS.gene058216:intron | 40.0% | |
| TCTGTTCTCTGTCTTCCTTA+GGG | - | chr2.4:56192123-56192142 | None:intergenic | 40.0% | |
| TTCTGTTCTCTGTCTTCCTT+AGG | - | chr2.4:56192124-56192143 | None:intergenic | 40.0% | |
| ! | GGCATTTAAAGCTGAACTTG+TGG | - | chr2.4:56193698-56193717 | None:intergenic | 40.0% |
| AAGTAGAGTGGTAGAGTCGT+AGG | + | chr2.4:56193089-56193108 | MS.gene058216:intron | 45.0% | |
| CAATGGAGATTGCAGCTTCA+TGG | - | chr2.4:56193719-56193738 | None:intergenic | 45.0% | |
| CCATAGCTGAACCTAAACAC+TGG | + | chr2.4:56194103-56194122 | MS.gene058216:intron | 45.0% | |
| CCATTCACGGCAAAACTTCA+TGG | - | chr2.4:56192009-56192028 | None:intergenic | 45.0% | |
| CTATGACTCAGTTAGACTGG+CGG | + | chr2.4:56193898-56193917 | MS.gene058216:intron | 45.0% | |
| CTGCCAAACTGTTTGACAGA+TGG | - | chr2.4:56193933-56193952 | None:intergenic | 45.0% | |
| GCCAGTCTAACTGAGTCATA+GGG | - | chr2.4:56193899-56193918 | None:intergenic | 45.0% | |
| GTGCCATCTGTCAAACAGTT+TGG | + | chr2.4:56193927-56193946 | MS.gene058216:intron | 45.0% | |
| TCCCTATGACTCAGTTAGAC+TGG | + | chr2.4:56193895-56193914 | MS.gene058216:intron | 45.0% | |
| TCTGCCCGCTAAAAGTAATG+TGG | + | chr2.4:56194189-56194208 | MS.gene058216:intron | 45.0% | |
| ! | CCAGTGTTTAGGTTCAGCTA+TGG | - | chr2.4:56194106-56194125 | None:intergenic | 45.0% |
| ! | CCATGAAGTTTTGCCGTGAA+TGG | + | chr2.4:56192006-56192025 | MS.gene058216:CDS | 45.0% |
| ! | TGGTGAAGCTGTGTTTTTCC+AGG | + | chr2.4:56192959-56192978 | MS.gene058216:CDS | 45.0% |
| !!! | TTTTGTTGTTCAGGAGGCAG+CGG | + | chr2.4:56192809-56192828 | MS.gene058216:intron | 45.0% |
| !! | ATTTAGAAATAAAAAAAAAA+TGG | - | chr2.4:56192067-56192086 | None:intergenic | 5.0% |
| !! | TTTAGAAATAAAAAAAAAAT+GGG | - | chr2.4:56192066-56192085 | None:intergenic | 5.0% |
| !!! | AAATTATTTTTTTTAGAATT+AGG | + | chr2.4:56192384-56192403 | MS.gene058216:intron | 5.0% |
| !!! | AATTATTTTTTTTAGAATTA+GGG | + | chr2.4:56192385-56192404 | MS.gene058216:intron | 5.0% |
| CATATGCAGGCAACTGCTAG+AGG | + | chr2.4:56194402-56194421 | MS.gene058216:intron | 50.0% | |
| CGCCAGTCTAACTGAGTCAT+AGG | - | chr2.4:56193900-56193919 | None:intergenic | 50.0% | |
| CGCTGCGTTCAATGCAATCA+TGG | + | chr2.4:56192939-56192958 | MS.gene058216:CDS | 50.0% | |
| GAGCAACTTGGCCAGTGTTT+AGG | - | chr2.4:56194117-56194136 | None:intergenic | 50.0% | |
| TCCAACTCTTCCTCGTACCA+AGG | + | chr2.4:56192911-56192930 | MS.gene058216:CDS | 50.0% | |
| TTCACCACTCTGTTGCTGAG+CGG | + | chr2.4:56192859-56192878 | MS.gene058216:CDS | 50.0% | |
| TTGTCGCAATTGCGATCACC+AGG | + | chr2.4:56192159-56192178 | MS.gene058216:CDS | 50.0% | |
| ! | GTTTGCTGCAACCCAAACTG+TGG | + | chr2.4:56194450-56194469 | MS.gene058216:CDS | 50.0% |
| CGCAATTGCGACAAGCGTAG+AGG | - | chr2.4:56192153-56192172 | None:intergenic | 55.0% | |
| GCCTTGGTACGAGGAAGAGT+TGG | - | chr2.4:56192915-56192934 | None:intergenic | 55.0% | |
| TCCAGCGGTGTCCACAGTTT+GGG | - | chr2.4:56194464-56194483 | None:intergenic | 55.0% | |
| TTGAACGCAGCGAACAGCCT+TGG | - | chr2.4:56192931-56192950 | None:intergenic | 55.0% | |
| ! | TGAGCGGACTCAAGTGTTGC+AGG | + | chr2.4:56192875-56192894 | MS.gene058216:CDS | 55.0% |
| ACCCAAACTGTGGACACCGC+TGG | + | chr2.4:56194460-56194479 | MS.gene058216:CDS | 60.0% | |
| CAGCGAACAGCCTTGGTACG+AGG | - | chr2.4:56192924-56192943 | None:intergenic | 60.0% | |
| CTCCAGCGGTGTCCACAGTT+TGG | - | chr2.4:56194465-56194484 | None:intergenic | 60.0% | |
| GAGTCCGCTCAGCAACAGAG+TGG | - | chr2.4:56192866-56192885 | None:intergenic | 60.0% | |
| GCAACTGCTAGAGGCGAGGA+AGG | + | chr2.4:56194411-56194430 | MS.gene058216:CDS | 60.0% | |
| GCAGGCAACTGCTAGAGGCG+AGG | + | chr2.4:56194407-56194426 | MS.gene058216:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.4 | gene | 56191999 | 56194491 | 56191999 | ID=MS.gene058216 |
| chr2.4 | mRNA | 56191999 | 56194491 | 56191999 | ID=MS.gene058216.t1;Parent=MS.gene058216 |
| chr2.4 | exon | 56191999 | 56192027 | 56191999 | ID=MS.gene058216.t1.exon1;Parent=MS.gene058216.t1 |
| chr2.4 | CDS | 56191999 | 56192027 | 56191999 | ID=cds.MS.gene058216.t1;Parent=MS.gene058216.t1 |
| chr2.4 | exon | 56192105 | 56192180 | 56192105 | ID=MS.gene058216.t1.exon2;Parent=MS.gene058216.t1 |
| chr2.4 | CDS | 56192105 | 56192180 | 56192105 | ID=cds.MS.gene058216.t1;Parent=MS.gene058216.t1 |
| chr2.4 | exon | 56192822 | 56192980 | 56192822 | ID=MS.gene058216.t1.exon3;Parent=MS.gene058216.t1 |
| chr2.4 | CDS | 56192822 | 56192980 | 56192822 | ID=cds.MS.gene058216.t1;Parent=MS.gene058216.t1 |
| chr2.4 | exon | 56194411 | 56194491 | 56194411 | ID=MS.gene058216.t1.exon4;Parent=MS.gene058216.t1 |
| chr2.4 | CDS | 56194411 | 56194491 | 56194411 | ID=cds.MS.gene058216.t1;Parent=MS.gene058216.t1 |
| Gene Sequence |
| Protein sequence |
