Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77019.t1 | RHN59438.1 | 85.1 | 249 | 32 | 2 | 42 | 287 | 117 | 363 | 2.70E-104 | 388.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77019.t1 | A0A396I3U1 | 85.1 | 249 | 32 | 2 | 42 | 287 | 117 | 363 | 1.9e-104 | 388.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050026 | MS.gene77019 | 0.802308 | 5.97E-49 | -1.69E-46 |
| MS.gene052519 | MS.gene77019 | 0.827456 | 1.55E-54 | -1.69E-46 |
| MS.gene053145 | MS.gene77019 | 0.802988 | 4.32E-49 | -1.69E-46 |
| MS.gene055818 | MS.gene77019 | 0.824381 | 8.33E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77019.t1 | MTR_4g029440 | 92.050 | 239 | 14 | 3 | 52 | 287 | 158 | 394 | 8.84e-140 | 402 |
| MS.gene77019.t1 | MTR_4g029440 | 92.050 | 239 | 14 | 3 | 52 | 287 | 164 | 400 | 1.51e-139 | 402 |
| MS.gene77019.t1 | MTR_7g093390 | 34.404 | 218 | 107 | 8 | 53 | 242 | 203 | 412 | 1.87e-17 | 82.8 |
| MS.gene77019.t1 | MTR_2g061230 | 45.361 | 97 | 50 | 2 | 52 | 148 | 139 | 232 | 3.08e-15 | 74.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77019.t1 | AT2G44410 | 47.619 | 63 | 33 | 0 | 53 | 115 | 156 | 218 | 1.64e-13 | 71.2 |
Find 83 sgRNAs with CRISPR-Local
Find 125 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCATTTCCATGTCCATTAAT+TGG | 0.158556 | 4.3:-70343480 | None:intergenic |
| TTGGGTATTATTCCAATTAA+TGG | 0.178483 | 4.3:+70343468 | MS.gene77019:CDS |
| ATTTCATATGATTTCTCTTT+TGG | 0.204972 | 4.3:+70342983 | MS.gene77019:CDS |
| TTATCAACATTCCTACTTAA+AGG | 0.205288 | 4.3:-70344050 | None:intergenic |
| CTTCTGTTGTCCAAAGTATT+TGG | 0.224976 | 4.3:+70343619 | MS.gene77019:CDS |
| CTGTCAGGTGTGGTACTATT+AGG | 0.236380 | 4.3:-70343693 | None:intergenic |
| CATAACCGAATTGGTGGATT+TGG | 0.278139 | 4.3:+70343648 | MS.gene77019:CDS |
| TCCAGGGATTGAAACCCTTT+TGG | 0.281249 | 4.3:-70342961 | None:intergenic |
| GTTGATAATGTTGCTGTTGC+AGG | 0.300831 | 4.3:+70344065 | MS.gene77019:CDS |
| TTTGCAACCATTAGATATAA+AGG | 0.307459 | 4.3:+70343392 | MS.gene77019:intron |
| TAAAGGGGAGGTAACTGAAT+TGG | 0.311612 | 4.3:+70343449 | MS.gene77019:CDS |
| TCAACAGGTTTCAAGGTTGC+TGG | 0.314817 | 4.3:+70343776 | MS.gene77019:CDS |
| GTTACTAGAAATTCAACTTT+AGG | 0.316383 | 4.3:+70343939 | MS.gene77019:CDS |
| TGTCAGGTGTGGTACTATTA+GGG | 0.319008 | 4.3:-70343692 | None:intergenic |
| GAAGAAGAAGATTGCGATGA+TGG | 0.350568 | 4.3:+70344201 | MS.gene77019:CDS |
| TGTTCTTATTAGATTTATCT+TGG | 0.368786 | 4.3:+70344699 | MS.gene77019:intron |
| TTCTGCTGAAAGATTAGTTC+AGG | 0.376998 | 4.3:+70343854 | MS.gene77019:CDS |
| CCCAAAAGGGTTTCAATCCC+TGG | 0.381334 | 4.3:+70342960 | MS.gene77019:CDS |
| TATGAAACCGCCAAATACTT+TGG | 0.402259 | 4.3:-70343629 | None:intergenic |
| CCAATTAATGGACATGGAAA+TGG | 0.405525 | 4.3:+70343480 | MS.gene77019:CDS |
| TGGCGGTTTCATAACCGAAT+TGG | 0.405555 | 4.3:+70343639 | MS.gene77019:CDS |
| AGCTGCTGCAGCTACAGAAT+TGG | 0.408760 | 4.3:-70344018 | None:intergenic |
| GACCATTGATATATGATTCA+AGG | 0.415979 | 4.3:-70343878 | None:intergenic |
| TGAACATGATGGTTCTCAAC+AGG | 0.427283 | 4.3:+70343761 | MS.gene77019:CDS |
| CTTCTGTTTCTCCTTTAAGT+AGG | 0.427847 | 4.3:+70344039 | MS.gene77019:CDS |
| AAAGGGGAGGTAACTGAATT+GGG | 0.428317 | 4.3:+70343450 | MS.gene77019:CDS |
| CTATGAGGATGAAGAAGAAA+TGG | 0.432820 | 4.3:+70343069 | MS.gene77019:CDS |
| ATGGTTCTCAACAGGTTTCA+AGG | 0.435727 | 4.3:+70343769 | MS.gene77019:CDS |
| CAGAAGAAGAAGATGCTCCT+TGG | 0.437761 | 4.3:-70343602 | None:intergenic |
| GTTACCTCCCCTTTACAAAC+AGG | 0.438464 | 4.3:-70343441 | None:intergenic |
| AGAGAAATCATATGAAATCC+AGG | 0.442368 | 4.3:-70342978 | None:intergenic |
| GTCTGCGTGCGAGACTGAAC+AGG | 0.444476 | 4.3:-70343729 | None:intergenic |
| GGCAAACCATTGTTTCTGTC+AGG | 0.445946 | 4.3:-70343708 | None:intergenic |
| GTTCTCCAAATCCACCAATT+CGG | 0.449571 | 4.3:-70343653 | None:intergenic |
| AGGAATGTCCTGTTTGTAAA+GGG | 0.451056 | 4.3:+70343433 | MS.gene77019:CDS |
| TATATCAATGGTCACAATAC+AGG | 0.455204 | 4.3:+70343888 | MS.gene77019:CDS |
| CGGTTTCATAACCGAATTGG+TGG | 0.464503 | 4.3:+70343642 | MS.gene77019:CDS |
| CTCTCAACTCTAGGTGCCTT+AGG | 0.467180 | 4.3:-70343558 | None:intergenic |
| CTGTTGTCCAAAGTATTTGG+CGG | 0.491683 | 4.3:+70343622 | MS.gene77019:CDS |
| AGAAGAAGAAGATGCTCCTT+GGG | 0.491995 | 4.3:-70343601 | None:intergenic |
| GAGAGTTCCTCCTCGACCTA+AGG | 0.502667 | 4.3:+70343542 | MS.gene77019:CDS |
| AAGGAATGTCCTGTTTGTAA+AGG | 0.503450 | 4.3:+70343432 | MS.gene77019:CDS |
| ACGGCCAATGAAAACCCAAA+AGG | 0.504614 | 4.3:+70342946 | None:intergenic |
| GACCACGACGACTCTCTGAC+TGG | 0.505888 | 4.3:-70343977 | None:intergenic |
| AACAGCATTAAATTCTGCAA+TGG | 0.508273 | 4.3:+70343830 | MS.gene77019:CDS |
| CGGCCAATGAAAACCCAAAA+GGG | 0.509267 | 4.3:+70342947 | None:intergenic |
| GACCTTGAATCATATATCAA+TGG | 0.517570 | 4.3:+70343876 | MS.gene77019:CDS |
| CCACAAGGATCACAAGTTGA+TGG | 0.518667 | 4.3:-70343015 | None:intergenic |
| TACAACTGATAGAAATGTAC+AGG | 0.535539 | 4.3:+70344100 | MS.gene77019:CDS |
| TCGAGGAGGAACTCTCAAAC+CGG | 0.538001 | 4.3:-70343535 | None:intergenic |
| ACTCTAGGTGCCTTAGGTCG+AGG | 0.546117 | 4.3:-70343552 | None:intergenic |
| CAGATGGAAATGAAAGAAGC+CGG | 0.547924 | 4.3:+70343516 | MS.gene77019:CDS |
| GTTGAATTTCTAGTAACAGT+AGG | 0.548372 | 4.3:-70343933 | None:intergenic |
| ATTATTCCAATTAATGGACA+TGG | 0.551144 | 4.3:+70343474 | MS.gene77019:CDS |
| GGTCAGAAGTGGAGGCTATG+AGG | 0.551697 | 4.3:+70343054 | MS.gene77019:CDS |
| GTTTCAAGGTTGCTGGAGCA+AGG | 0.551868 | 4.3:+70343783 | MS.gene77019:CDS |
| TATGAGGATGAAGAAGAAAT+GGG | 0.553102 | 4.3:+70343070 | MS.gene77019:CDS |
| TGCGGTAAGGTGGTCAGAAG+TGG | 0.555358 | 4.3:+70343043 | MS.gene77019:CDS |
| GAATTTCTAGTAACAGTAGG+AGG | 0.555492 | 4.3:-70343930 | None:intergenic |
| TGTCTAATACTCTCAACTCT+AGG | 0.555708 | 4.3:-70343567 | None:intergenic |
| CCTTGTGGTGGATTGCGGTA+AGG | 0.564088 | 4.3:+70343030 | MS.gene77019:CDS |
| GAGAAATCATATGAAATCCA+GGG | 0.585121 | 4.3:-70342977 | None:intergenic |
| GTGATCCTTGTGGTGGATTG+CGG | 0.590929 | 4.3:+70343025 | MS.gene77019:CDS |
| ACCATTGTTTCTGTCAGGTG+TGG | 0.598241 | 4.3:-70343703 | None:intergenic |
| AATGGACATGGAAATGGCGG+CGG | 0.603447 | 4.3:+70343486 | MS.gene77019:CDS |
| TGGCGGCGGTGATTGTCAGA+TGG | 0.606714 | 4.3:+70343500 | MS.gene77019:CDS |
| TCTTCATCTAGAGGTAGAAG+AGG | 0.623511 | 4.3:+70344140 | MS.gene77019:intron |
| AGACAGAAGTTGCTAACCCA+AGG | 0.623915 | 4.3:+70343585 | MS.gene77019:CDS |
| GGTAAGGTGGTCAGAAGTGG+AGG | 0.624709 | 4.3:+70343046 | MS.gene77019:CDS |
| CCATCAACTTGTGATCCTTG+TGG | 0.638594 | 4.3:+70343015 | MS.gene77019:CDS |
| ACCACACCTGACAGAAACAA+TGG | 0.640564 | 4.3:+70343702 | MS.gene77019:CDS |
| ATTAATGGACATGGAAATGG+CGG | 0.640745 | 4.3:+70343483 | MS.gene77019:CDS |
| ATCAATGGTCACAATACAGG+AGG | 0.640899 | 4.3:+70343891 | MS.gene77019:CDS |
| ATGTCCTGTTTGTAAAGGGG+AGG | 0.641102 | 4.3:+70343437 | MS.gene77019:CDS |
| TCAACTTGTGATCCTTGTGG+TGG | 0.641147 | 4.3:+70343018 | MS.gene77019:CDS |
| ACAGACAACAATGAACATGA+TGG | 0.648148 | 4.3:+70343750 | MS.gene77019:CDS |
| GGAATGTCCTGTTTGTAAAG+GGG | 0.658869 | 4.3:+70343434 | MS.gene77019:CDS |
| TGTGGTGGATTGCGGTAAGG+TGG | 0.664660 | 4.3:+70343033 | MS.gene77019:CDS |
| GGATGCGTATTCGAAAGCAA+AGG | 0.670493 | 4.3:+70343413 | MS.gene77019:CDS |
| CCTTACCGCAATCCACCACA+AGG | 0.671980 | 4.3:-70343030 | None:intergenic |
| CTAGGTGCCTTAGGTCGAGG+AGG | 0.679868 | 4.3:-70343549 | None:intergenic |
| AACCAGTCAGAGAGTCGTCG+TGG | 0.690684 | 4.3:+70343975 | MS.gene77019:CDS |
| GAGGATGAAGAAGAAATGGG+CGG | 0.713764 | 4.3:+70343073 | MS.gene77019:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATTCAAATTTCAAATAGT+TGG | + | chr4.3:70343325-70343344 | MS.gene77019:intron | 15.0% |
| !! | TGTTCTTATTAGATTTATCT+TGG | + | chr4.3:70344699-70344718 | MS.gene77019:intron | 20.0% |
| !! | TTAAACTGTTTATCCAAATA+GGG | + | chr4.3:70344583-70344602 | MS.gene77019:intron | 20.0% |
| !!! | ATTTCATATGATTTCTCTTT+TGG | + | chr4.3:70342983-70343002 | MS.gene77019:CDS | 20.0% |
| !!! | GTTTTATTCAATAGATGTAA+AGG | + | chr4.3:70344320-70344339 | MS.gene77019:intron | 20.0% |
| ! | AATAAGAACATGTAAAGAGA+TGG | - | chr4.3:70344689-70344708 | None:intergenic | 25.0% |
| ! | GTTAAACTGTTTATCCAAAT+AGG | + | chr4.3:70344582-70344601 | MS.gene77019:intron | 25.0% |
| ! | GTTACTAGAAATTCAACTTT+AGG | + | chr4.3:70343939-70343958 | MS.gene77019:CDS | 25.0% |
| ! | TCAAATAAGTCAATCCAAAA+GGG | - | chr4.3:70344353-70344372 | None:intergenic | 25.0% |
| ! | TTATCAACATTCCTACTTAA+AGG | - | chr4.3:70344053-70344072 | None:intergenic | 25.0% |
| ! | TTGGGTATTATTCCAATTAA+TGG | + | chr4.3:70343468-70343487 | MS.gene77019:CDS | 25.0% |
| ! | TTTGCAACCATTAGATATAA+AGG | + | chr4.3:70343392-70343411 | MS.gene77019:intron | 25.0% |
| !! | AAAAAATTAGGTTTAGGGTT+TGG | + | chr4.3:70343352-70343371 | MS.gene77019:intron | 25.0% |
| !! | ACTTATTTGAGATTATCTAC+TGG | + | chr4.3:70344363-70344382 | MS.gene77019:intron | 25.0% |
| !! | ATTATTCCAATTAATGGACA+TGG | + | chr4.3:70343474-70343493 | MS.gene77019:CDS | 25.0% |
| !!! | AAACCCTAAACCTAATTTTT+TGG | - | chr4.3:70343353-70343372 | None:intergenic | 25.0% |
| AACAGCATTAAATTCTGCAA+TGG | + | chr4.3:70343830-70343849 | MS.gene77019:CDS | 30.0% | |
| AGAGAAATCATATGAAATCC+AGG | - | chr4.3:70342981-70343000 | None:intergenic | 30.0% | |
| ATAGTTGGAGCCAAAAAATT+AGG | + | chr4.3:70343340-70343359 | MS.gene77019:intron | 30.0% | |
| CATTCTGTAACAAACATAAG+AGG | - | chr4.3:70344627-70344646 | None:intergenic | 30.0% | |
| CTCAAATAAGTCAATCCAAA+AGG | - | chr4.3:70344354-70344373 | None:intergenic | 30.0% | |
| GACCATTGATATATGATTCA+AGG | - | chr4.3:70343881-70343900 | None:intergenic | 30.0% | |
| GACCTTGAATCATATATCAA+TGG | + | chr4.3:70343876-70343895 | MS.gene77019:CDS | 30.0% | |
| GAGAAATCATATGAAATCCA+GGG | - | chr4.3:70342980-70342999 | None:intergenic | 30.0% | |
| GAGCCAAAAAATTAGGTTTA+GGG | + | chr4.3:70343347-70343366 | MS.gene77019:intron | 30.0% | |
| TACAACTGATAGAAATGTAC+AGG | + | chr4.3:70344100-70344119 | MS.gene77019:CDS | 30.0% | |
| TACGCATCCTTTATATCTAA+TGG | - | chr4.3:70343402-70343421 | None:intergenic | 30.0% | |
| TATATCAATGGTCACAATAC+AGG | + | chr4.3:70343888-70343907 | MS.gene77019:CDS | 30.0% | |
| TATGAGGATGAAGAAGAAAT+GGG | + | chr4.3:70343070-70343089 | MS.gene77019:CDS | 30.0% | |
| ! | ACATGAAGTAGAAGAAGTTT+TGG | + | chr4.3:70343166-70343185 | MS.gene77019:intron | 30.0% |
| ! | GTAAAGGATATTTACCCTTT+TGG | + | chr4.3:70344336-70344355 | MS.gene77019:intron | 30.0% |
| ! | GTATATGTGTTTTCCAATGT+AGG | + | chr4.3:70343283-70343302 | MS.gene77019:intron | 30.0% |
| !! | GTTGAATTTCTAGTAACAGT+AGG | - | chr4.3:70343936-70343955 | None:intergenic | 30.0% |
| !!! | AAGAAGTTTTAGAGAAAACG+TGG | + | chr4.3:70343196-70343215 | MS.gene77019:intron | 30.0% |
| !!! | AGAAGTTTTAGAGAAAACGT+GGG | + | chr4.3:70343197-70343216 | MS.gene77019:intron | 30.0% |
| AAGGAATGTCCTGTTTGTAA+AGG | + | chr4.3:70343432-70343451 | MS.gene77019:CDS | 35.0% | |
| ACAGACAACAATGAACATGA+TGG | + | chr4.3:70343750-70343769 | MS.gene77019:CDS | 35.0% | |
| AGAGGATATTGACAATTAGC+AGG | - | chr4.3:70344609-70344628 | None:intergenic | 35.0% | |
| AGATAACGTGTGACTATGAT+TGG | + | chr4.3:70343224-70343243 | MS.gene77019:intron | 35.0% | |
| AGGAATGTCCTGTTTGTAAA+GGG | + | chr4.3:70343433-70343452 | MS.gene77019:CDS | 35.0% | |
| CCATTTCCATGTCCATTAAT+TGG | - | chr4.3:70343483-70343502 | None:intergenic | 35.0% | |
| CTATGAGGATGAAGAAGAAA+TGG | + | chr4.3:70343069-70343088 | MS.gene77019:CDS | 35.0% | |
| GGAGCCAAAAAATTAGGTTT+AGG | + | chr4.3:70343346-70343365 | MS.gene77019:intron | 35.0% | |
| TATGAAACCGCCAAATACTT+TGG | - | chr4.3:70343632-70343651 | None:intergenic | 35.0% | |
| TGTCTAATACTCTCAACTCT+AGG | - | chr4.3:70343570-70343589 | None:intergenic | 35.0% | |
| TTCTACCTCTAGATGAAGAA+GGG | - | chr4.3:70344139-70344158 | None:intergenic | 35.0% | |
| ! | ATGTGTTTTCCAATGTAGGT+GGG | + | chr4.3:70343287-70343306 | MS.gene77019:intron | 35.0% |
| ! | ATTAATGGACATGGAAATGG+CGG | + | chr4.3:70343483-70343502 | MS.gene77019:CDS | 35.0% |
| ! | CCAATTAATGGACATGGAAA+TGG | + | chr4.3:70343480-70343499 | MS.gene77019:CDS | 35.0% |
| ! | CTTCTGTTGTCCAAAGTATT+TGG | + | chr4.3:70343619-70343638 | MS.gene77019:CDS | 35.0% |
| ! | CTTCTGTTTCTCCTTTAAGT+AGG | + | chr4.3:70344039-70344058 | MS.gene77019:CDS | 35.0% |
| ! | GTGTGACTATGATTGGTTAT+TGG | + | chr4.3:70343231-70343250 | MS.gene77019:intron | 35.0% |
| ! | TATGTGTTTTCCAATGTAGG+TGG | + | chr4.3:70343286-70343305 | MS.gene77019:intron | 35.0% |
| ! | TTCTGCTGAAAGATTAGTTC+AGG | + | chr4.3:70343854-70343873 | MS.gene77019:CDS | 35.0% |
| !! | GAATTTCTAGTAACAGTAGG+AGG | - | chr4.3:70343933-70343952 | None:intergenic | 35.0% |
| AAAGGGGAGGTAACTGAATT+GGG | + | chr4.3:70343450-70343469 | MS.gene77019:CDS | 40.0% | |
| AGAAGAAGAAGATGCTCCTT+GGG | - | chr4.3:70343604-70343623 | None:intergenic | 40.0% | |
| ATCAATGGTCACAATACAGG+AGG | + | chr4.3:70343891-70343910 | MS.gene77019:CDS | 40.0% | |
| ATGGTTCTCAACAGGTTTCA+AGG | + | chr4.3:70343769-70343788 | MS.gene77019:CDS | 40.0% | |
| CAGATGGAAATGAAAGAAGC+CGG | + | chr4.3:70343516-70343535 | MS.gene77019:CDS | 40.0% | |
| CGCAATCTTCTTCTTCTTCT+TGG | - | chr4.3:70344197-70344216 | None:intergenic | 40.0% | |
| CTTCTACCTCTAGATGAAGA+AGG | - | chr4.3:70344140-70344159 | None:intergenic | 40.0% | |
| GAAGAAGAAGATTGCGATGA+TGG | + | chr4.3:70344201-70344220 | MS.gene77019:CDS | 40.0% | |
| GGAATGTCCTGTTTGTAAAG+GGG | + | chr4.3:70343434-70343453 | MS.gene77019:CDS | 40.0% | |
| GGTTATTGGTATGTGAGAGA+TGG | + | chr4.3:70343245-70343264 | MS.gene77019:intron | 40.0% | |
| GTTCTCCAAATCCACCAATT+CGG | - | chr4.3:70343656-70343675 | None:intergenic | 40.0% | |
| TAAAGGGGAGGTAACTGAAT+TGG | + | chr4.3:70343449-70343468 | MS.gene77019:CDS | 40.0% | |
| TCTTCATCTAGAGGTAGAAG+AGG | + | chr4.3:70344140-70344159 | MS.gene77019:intron | 40.0% | |
| TGAACATGATGGTTCTCAAC+AGG | + | chr4.3:70343761-70343780 | MS.gene77019:CDS | 40.0% | |
| TGTCAGGTGTGGTACTATTA+GGG | - | chr4.3:70343695-70343714 | None:intergenic | 40.0% | |
| TGTCTCACTTGAGTAAGTTC+AGG | + | chr4.3:70344648-70344667 | MS.gene77019:intron | 40.0% | |
| ! | AGGTTTAGGGTTTGGCAATT+AGG | + | chr4.3:70343360-70343379 | MS.gene77019:intron | 40.0% |
| ! | CTGTTGTCCAAAGTATTTGG+CGG | + | chr4.3:70343622-70343641 | MS.gene77019:CDS | 40.0% |
| ! | GGTTTAGGGTTTGGCAATTA+GGG | + | chr4.3:70343361-70343380 | MS.gene77019:intron | 40.0% |
| !! | CATAACCGAATTGGTGGATT+TGG | + | chr4.3:70343648-70343667 | MS.gene77019:CDS | 40.0% |
| !! | GTTGATAATGTTGCTGTTGC+AGG | + | chr4.3:70344065-70344084 | MS.gene77019:CDS | 40.0% |
| ACCACACCTGACAGAAACAA+TGG | + | chr4.3:70343702-70343721 | MS.gene77019:CDS | 45.0% | |
| AGACAGAAGTTGCTAACCCA+AGG | + | chr4.3:70343585-70343604 | MS.gene77019:CDS | 45.0% | |
| AGTATGCATGCATGTGAACG+AGG | - | chr4.3:70344267-70344286 | None:intergenic | 45.0% | |
| ATGTCCTGTTTGTAAAGGGG+AGG | + | chr4.3:70343437-70343456 | MS.gene77019:CDS | 45.0% | |
| CAGAAGAAGAAGATGCTCCT+TGG | - | chr4.3:70343605-70343624 | None:intergenic | 45.0% | |
| CCAATGTAGGTGGGATATGA+GGG | + | chr4.3:70343296-70343315 | MS.gene77019:intron | 45.0% | |
| CCATCAACTTGTGATCCTTG+TGG | + | chr4.3:70343015-70343034 | MS.gene77019:CDS | 45.0% | |
| CGGTTTCATAACCGAATTGG+TGG | + | chr4.3:70343642-70343661 | MS.gene77019:CDS | 45.0% | |
| CTAGACCCTTCTTCATCTAG+AGG | + | chr4.3:70344131-70344150 | MS.gene77019:intron | 45.0% | |
| CTGTCAGGTGTGGTACTATT+AGG | - | chr4.3:70343696-70343715 | None:intergenic | 45.0% | |
| GACAATTAGCAGGCCCTATT+TGG | - | chr4.3:70344599-70344618 | None:intergenic | 45.0% | |
| GAGGATGAAGAAGAAATGGG+CGG | + | chr4.3:70343073-70343092 | MS.gene77019:CDS | 45.0% | |
| GGATGCGTATTCGAAAGCAA+AGG | + | chr4.3:70343413-70343432 | MS.gene77019:CDS | 45.0% | |
| GTTACCTCCCCTTTACAAAC+AGG | - | chr4.3:70343444-70343463 | None:intergenic | 45.0% | |
| TCAACAGGTTTCAAGGTTGC+TGG | + | chr4.3:70343776-70343795 | MS.gene77019:CDS | 45.0% | |
| TCAACTTGTGATCCTTGTGG+TGG | + | chr4.3:70343018-70343037 | MS.gene77019:CDS | 45.0% | |
| TCCAATGTAGGTGGGATATG+AGG | + | chr4.3:70343295-70343314 | MS.gene77019:intron | 45.0% | |
| TGGCGGTTTCATAACCGAAT+TGG | + | chr4.3:70343639-70343658 | MS.gene77019:CDS | 45.0% | |
| ! | CCACAAGGATCACAAGTTGA+TGG | - | chr4.3:70343018-70343037 | None:intergenic | 45.0% |
| ! | CCAGGGATTGAAACCCTTTT+GGG | - | chr4.3:70342963-70342982 | None:intergenic | 45.0% |
| ! | TCCAGGGATTGAAACCCTTT+TGG | - | chr4.3:70342964-70342983 | None:intergenic | 45.0% |
| !! | ACCATTGTTTCTGTCAGGTG+TGG | - | chr4.3:70343706-70343725 | None:intergenic | 45.0% |
| !! | GGCAAACCATTGTTTCTGTC+AGG | - | chr4.3:70343711-70343730 | None:intergenic | 45.0% |
| AATGGACATGGAAATGGCGG+CGG | + | chr4.3:70343486-70343505 | MS.gene77019:CDS | 50.0% | |
| AGCTGCTGCAGCTACAGAAT+TGG | - | chr4.3:70344021-70344040 | None:intergenic | 50.0% | |
| CCCAAAAGGGTTTCAATCCC+TGG | + | chr4.3:70342960-70342979 | MS.gene77019:CDS | 50.0% | |
| CCCTCATATCCCACCTACAT+TGG | - | chr4.3:70343299-70343318 | None:intergenic | 50.0% | |
| CGGCTGAGAGAAATTGAGAG+AGG | + | chr4.3:70343119-70343138 | MS.gene77019:intron | 50.0% | |
| CTCTCAACTCTAGGTGCCTT+AGG | - | chr4.3:70343561-70343580 | None:intergenic | 50.0% | |
| GATGAAGAAGAAATGGGCGG+TGG | + | chr4.3:70343076-70343095 | MS.gene77019:intron | 50.0% | |
| GTTTCAAGGTTGCTGGAGCA+AGG | + | chr4.3:70343783-70343802 | MS.gene77019:CDS | 50.0% | |
| TCGAGGAGGAACTCTCAAAC+CGG | - | chr4.3:70343538-70343557 | None:intergenic | 50.0% | |
| !! | GTGATCCTTGTGGTGGATTG+CGG | + | chr4.3:70343025-70343044 | MS.gene77019:CDS | 50.0% |
| AACCAGTCAGAGAGTCGTCG+TGG | + | chr4.3:70343975-70343994 | MS.gene77019:CDS | 55.0% | |
| ACTCTAGGTGCCTTAGGTCG+AGG | - | chr4.3:70343555-70343574 | None:intergenic | 55.0% | |
| CCTTACCGCAATCCACCACA+AGG | - | chr4.3:70343033-70343052 | None:intergenic | 55.0% | |
| GAGAGTTCCTCCTCGACCTA+AGG | + | chr4.3:70343542-70343561 | MS.gene77019:CDS | 55.0% | |
| GGTAAGGTGGTCAGAAGTGG+AGG | + | chr4.3:70343046-70343065 | MS.gene77019:CDS | 55.0% | |
| GGTCAGAAGTGGAGGCTATG+AGG | + | chr4.3:70343054-70343073 | MS.gene77019:CDS | 55.0% | |
| TGCGGTAAGGTGGTCAGAAG+TGG | + | chr4.3:70343043-70343062 | MS.gene77019:CDS | 55.0% | |
| TGGCTGAGAGAGGAGAAGAG+CGG | + | chr4.3:70343096-70343115 | MS.gene77019:intron | 55.0% | |
| !! | CCTTGTGGTGGATTGCGGTA+AGG | + | chr4.3:70343030-70343049 | MS.gene77019:CDS | 55.0% |
| !! | TGTGGTGGATTGCGGTAAGG+TGG | + | chr4.3:70343033-70343052 | MS.gene77019:CDS | 55.0% |
| AAATGGGCGGTGGCTGAGAG+AGG | + | chr4.3:70343086-70343105 | MS.gene77019:intron | 60.0% | |
| CTAGGTGCCTTAGGTCGAGG+AGG | - | chr4.3:70343552-70343571 | None:intergenic | 60.0% | |
| CTGAGAGAGGAGAAGAGCGG+CGG | + | chr4.3:70343099-70343118 | MS.gene77019:intron | 60.0% | |
| GACCACGACGACTCTCTGAC+TGG | - | chr4.3:70343980-70343999 | None:intergenic | 60.0% | |
| GTCTGCGTGCGAGACTGAAC+AGG | - | chr4.3:70343732-70343751 | None:intergenic | 60.0% | |
| TGGCGGCGGTGATTGTCAGA+TGG | + | chr4.3:70343500-70343519 | MS.gene77019:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 70342953 | 70344733 | 70342953 | ID=MS.gene77019 |
| chr4.3 | mRNA | 70342953 | 70344733 | 70342953 | ID=MS.gene77019.t1;Parent=MS.gene77019 |
| chr4.3 | exon | 70342953 | 70343094 | 70342953 | ID=MS.gene77019.t1.exon1;Parent=MS.gene77019.t1 |
| chr4.3 | CDS | 70342953 | 70343094 | 70342953 | ID=cds.MS.gene77019.t1;Parent=MS.gene77019.t1 |
| chr4.3 | exon | 70343406 | 70344121 | 70343406 | ID=MS.gene77019.t1.exon2;Parent=MS.gene77019.t1 |
| chr4.3 | CDS | 70343406 | 70344121 | 70343406 | ID=cds.MS.gene77019.t1;Parent=MS.gene77019.t1 |
| chr4.3 | exon | 70344153 | 70344231 | 70344153 | ID=MS.gene77019.t1.exon3;Parent=MS.gene77019.t1 |
| chr4.3 | CDS | 70344153 | 70344231 | 70344153 | ID=cds.MS.gene77019.t1;Parent=MS.gene77019.t1 |
| chr4.3 | exon | 70344711 | 70344733 | 70344711 | ID=MS.gene77019.t1.exon4;Parent=MS.gene77019.t1 |
| chr4.3 | CDS | 70344711 | 70344733 | 70344711 | ID=cds.MS.gene77019.t1;Parent=MS.gene77019.t1 |
| Gene Sequence |
| Protein sequence |
