AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene77490


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene77490.t1 MTR_3g083550 98.387 248 3 1 1 247 1 248 4.36e-166 459
MS.gene77490.t1 MTR_1g054675 67.949 156 28 4 38 187 41 180 1.00e-59 188
MS.gene77490.t1 MTR_5g079870 65.169 89 31 0 41 129 48 136 7.23e-38 133
MS.gene77490.t1 MTR_5g079870 65.169 89 31 0 41 129 48 136 1.24e-37 133
MS.gene77490.t1 MTR_4g118630 61.538 91 35 0 38 128 46 136 1.16e-34 126
MS.gene77490.t1 MTR_5g079870 62.745 51 19 0 79 129 10 60 7.83e-16 74.3
MS.gene77490.t1 MTR_4g094235 41.558 77 45 0 41 117 17 93 8.41e-13 67.0
MS.gene77490.t1 MTR_4g094235 41.558 77 45 0 41 117 17 93 8.48e-13 67.0
MS.gene77490.t1 MTR_5g070450 40.260 77 46 0 41 117 17 93 5.67e-12 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene77490.t1 AT3G13570 62.651 249 74 8 1 247 1 232 1.58e-76 232
MS.gene77490.t1 AT1G55310 62.771 231 71 5 1 231 1 216 9.87e-72 219
MS.gene77490.t1 AT1G55310 62.771 231 71 5 1 231 1 216 9.87e-72 219
MS.gene77490.t1 AT1G55310 63.677 223 66 5 1 223 1 208 1.90e-69 215
MS.gene77490.t1 AT1G55310 60.426 235 66 6 1 223 1 220 3.86e-66 207
MS.gene77490.t1 AT5G18810 57.407 108 46 0 35 142 42 149 5.04e-37 130
MS.gene77490.t1 AT5G18810 57.407 108 46 0 35 142 42 149 5.18e-37 130
MS.gene77490.t1 AT3G55460 57.895 95 40 0 42 136 49 143 3.28e-34 124
MS.gene77490.t1 AT1G55310 55.882 136 48 5 89 223 1 125 1.22e-27 105
MS.gene77490.t1 AT1G55310 55.882 136 48 5 89 223 1 125 1.22e-27 105
MS.gene77490.t1 AT1G55310 56.296 135 48 4 89 223 1 124 1.33e-21 89.4
MS.gene77490.t1 AT5G64200 39.130 92 54 1 41 130 17 108 1.76e-13 68.9
MS.gene77490.t1 AT5G64200 39.130 92 54 1 41 130 17 108 1.76e-13 68.9

Find 96 sgRNAs with CRISPR-Local

Find 221 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGTAGACCTTTCGGTCATTT+TGG 0.233664 3.2:-72237255 MS.gene77490:CDS
GCTTCTCACATCCCCGTTCT+TGG 0.247700 3.2:+72235150 None:intergenic
CTCGTTCACCCCGCTATTCC+CGG 0.259956 3.2:-72235596 MS.gene77490:CDS
TAACCCAGTGTAATAATCTT+TGG 0.277366 3.2:+72237209 None:intergenic
TACAGGCAACCTCGTGGTTT+TGG 0.283342 3.2:-72236774 MS.gene77490:intron
CTTGAATATTCCCTTCGTTT+AGG 0.306626 3.2:+72235516 None:intergenic
AACCCAGTGTAATAATCTTT+GGG 0.338449 3.2:+72237210 None:intergenic
ATGGATGGTCAAGTTCTTCT+TGG 0.350938 3.2:-72236702 MS.gene77490:CDS
TCTCTTCCATTGTCACTGAC+TGG 0.377083 3.2:+72235039 None:intergenic
CACGCTCTCCACCCAAGAAC+GGG 0.377947 3.2:-72235162 MS.gene77490:CDS
CAAGTCCGAGCCGTGATGTC+AGG 0.383176 3.2:-72235084 MS.gene77490:CDS
AAAGGTCTACGGAGATCTTC+AGG 0.385331 3.2:+72237267 None:intergenic
CTTCTCACATCCCCGTTCTT+GGG 0.393169 3.2:+72235151 None:intergenic
GAAGATCTCCGTAGACCTTT+CGG 0.405470 3.2:-72237264 MS.gene77490:CDS
CTGTATCACCTGAGGATAGA+AGG 0.408964 3.2:-72235228 MS.gene77490:CDS
AGGTGGAGACCGGGAATAGC+GGG 0.413550 3.2:+72235587 None:intergenic
ATCTGTGACGAGGTGGAGAC+CGG 0.419316 3.2:+72235577 None:intergenic
TACAGCAGAAGAGGCGGCGG+AGG 0.422786 3.2:-72237384 MS.gene77490:CDS
AGCAGAAGAGGCGGCGGAGG+AGG 0.424350 3.2:-72237381 MS.gene77490:CDS
CTCTCGACTGAGCCTTTCAC+TGG 0.429082 3.2:+72235115 None:intergenic
GGGAGATAAATATCCTTAAG+AGG 0.431391 3.2:+72237231 None:intergenic
CTCTTCCATTGTCACTGACT+GGG 0.434177 3.2:+72235040 None:intergenic
CTGACATCACGGCTCGGACT+TGG 0.436240 3.2:+72235085 None:intergenic
CTTTCACTGGACTCTGACTA+CGG 0.452235 3.2:+72235128 None:intergenic
CTAAACGAAGGGAATATTCA+AGG 0.464257 3.2:-72235515 MS.gene77490:intron
CTCCCCAAAGATTATTACAC+TGG 0.473935 3.2:-72237213 MS.gene77490:CDS
CTGTAACGCGGTGGTGGAGA+TGG 0.491469 3.2:+72237402 None:intergenic
CTTCTGCTGTAACGCGGTGG+TGG 0.495589 3.2:+72237396 None:intergenic
GGTAGGTAGATCGCTTTGAC+GGG 0.497430 3.2:+72237326 None:intergenic
GCGTAACGCCGGCGAGGACT+TGG 0.497603 3.2:+72237351 None:intergenic
TCTCTGACCCTCATCTCAGT+TGG 0.506671 3.2:+72236636 None:intergenic
TTCCCTTCGTTTAGGAGGAG+GGG 0.509465 3.2:+72235524 None:intergenic
TGGTAGGTAGATCGCTTTGA+CGG 0.523524 3.2:+72237325 None:intergenic
ATGGTCAAGTTCTTCTTGGT+AGG 0.524497 3.2:-72236698 MS.gene77490:CDS
TATTCCCTTCGTTTAGGAGG+AGG 0.525431 3.2:+72235522 None:intergenic
TGGTCAAGTTCTTCTTGGTA+GGG 0.533607 3.2:-72236697 MS.gene77490:CDS
CGACTGTGCCTTCTATCCTC+AGG 0.535468 3.2:+72235220 None:intergenic
CTCACATCCCCGTTCTTGGG+TGG 0.544494 3.2:+72235154 None:intergenic
ATTCCCTTCGTTTAGGAGGA+GGG 0.548091 3.2:+72235523 None:intergenic
TCTGTGACGAGGTGGAGACC+GGG 0.551287 3.2:+72235578 None:intergenic
GATAGAAGGCACAGTCGAGA+AGG 0.551688 3.2:-72235214 MS.gene77490:CDS
CCACCGCGTTACAGCAGAAG+AGG 0.552873 3.2:-72237393 MS.gene77490:CDS
TTCGCATCAGCAGCATCCGC+AGG 0.554382 3.2:+72236732 None:intergenic
CAAAATGACCGAAAGGTCTA+CGG 0.557171 3.2:+72237256 None:intergenic
CATGGCGAAGGTTACGAACA+AGG 0.560608 3.2:+72237298 None:intergenic
AAGTCCGAGCCGTGATGTCA+GGG 0.561984 3.2:-72235083 MS.gene77490:CDS
GAGGTGGAGACCGGGAATAG+CGG 0.564550 3.2:+72235586 None:intergenic
GAATATTCCCTTCGTTTAGG+AGG 0.564905 3.2:+72235519 None:intergenic
GATCTTCAGGCCTACAGTCA+TGG 0.565387 3.2:+72237280 None:intergenic
CGTAGTCAGAGTCCAGTGAA+AGG 0.572092 3.2:-72235127 MS.gene77490:CDS
TCACGCTCTCCACCCAAGAA+CGG 0.579197 3.2:-72235163 MS.gene77490:CDS
TGCTGATGCGAAATATCATA+TGG 0.579685 3.2:-72236721 MS.gene77490:CDS
GAAAGAAGCCAACTGAGATG+AGG 0.582129 3.2:-72236644 MS.gene77490:CDS
GTAACCTTCGCCATGACTGT+AGG 0.586128 3.2:-72237290 MS.gene77490:CDS
GAAGAAGTCCAAGTCCTCGC+CGG 0.586465 3.2:-72237359 MS.gene77490:CDS
TCAGGGAAGCATCCCGCAGT+AGG 0.587173 3.2:-72235066 MS.gene77490:CDS
GCTTCCCTGACATCACGGCT+CGG 0.592080 3.2:+72235079 None:intergenic
TTTGACGGGGAGCGTAACGC+CGG 0.593260 3.2:+72237340 None:intergenic
TTCCCCTCCTCCTAAACGAA+GGG 0.597370 3.2:-72235526 MS.gene77490:CDS
TCCCCAAAGATTATTACACT+GGG 0.598302 3.2:-72237212 MS.gene77490:intron
AAAGAAGCCAACTGAGATGA+GGG 0.598374 3.2:-72236643 MS.gene77490:CDS
AAGGTTACGAACAAGGAGAC+TGG 0.604315 3.2:+72237305 None:intergenic
CGGGGTGAACGAGAATAACG+TGG 0.606363 3.2:+72235606 None:intergenic
GTTTATGTTTCAGTAGCGGT+CGG 0.608429 3.2:-72235653 MS.gene77490:intron
TTGTAGATCTGTATCACCTG+AGG 0.616753 3.2:-72235236 MS.gene77490:intron
TATTCAATTTGTGGATCCTG+CGG 0.619040 3.2:-72236748 MS.gene77490:CDS
CCTCTTCTGCTGTAACGCGG+TGG 0.622436 3.2:+72237393 None:intergenic
AGATGAGGGTCAGAGAGAGA+AGG 0.623453 3.2:-72236629 MS.gene77490:intron
ATTCCCCTCCTCCTAAACGA+AGG 0.624660 3.2:-72235527 MS.gene77490:CDS
CGTTGTCATCTGAAGATGAG+AGG 0.624703 3.2:-72237438 None:intergenic
CGTTACAGCAGAAGAGGCGG+CGG 0.624756 3.2:-72237387 MS.gene77490:CDS
GGGATGCTTCCCTGACATCA+CGG 0.627142 3.2:+72235074 None:intergenic
CCGCCTCTTCTGCTGTAACG+CGG 0.629314 3.2:+72237390 None:intergenic
ACCCAGTGTAATAATCTTTG+GGG 0.631656 3.2:+72237211 None:intergenic
GGTGGAGACCGGGAATAGCG+GGG 0.633611 3.2:+72235588 None:intergenic
GTCGGCATTCTGATCGAAGG+AGG 0.634775 3.2:-72235635 MS.gene77490:CDS
GAGCGAGATCTGTGACGAGG+TGG 0.637564 3.2:+72235570 None:intergenic
CAGGCCTACAGTCATGGCGA+AGG 0.637832 3.2:+72237286 None:intergenic
GCGGTCGGCATTCTGATCGA+AGG 0.640639 3.2:-72235638 MS.gene77490:CDS
GATGCGAAATATCATATGGA+TGG 0.642241 3.2:-72236717 MS.gene77490:CDS
AGAGGACCAAAATGACCGAA+AGG 0.644554 3.2:+72237249 None:intergenic
CTGACTGGGAGACCTACTGC+GGG 0.645256 3.2:+72235054 None:intergenic
GATCACAACACAGCAGAGAG+AGG 0.645731 3.2:-72235192 MS.gene77490:CDS
CCGCGTTACAGCAGAAGAGG+CGG 0.649844 3.2:-72237390 MS.gene77490:CDS
CGGGGAGCGTAACGCCGGCG+AGG 0.649965 3.2:+72237345 None:intergenic
TTACGAACAAGGAGACTGGT+AGG 0.662391 3.2:+72237309 None:intergenic
ACGCTCTCCACCCAAGAACG+GGG 0.664146 3.2:-72235161 MS.gene77490:CDS
CGTCACAGATCTCGCTCTCG+CGG 0.666167 3.2:-72235564 MS.gene77490:CDS
GGGGTGAACGAGAATAACGT+GGG 0.666188 3.2:+72235607 None:intergenic
CGAGAGCGAGATCTGTGACG+AGG 0.668387 3.2:+72235567 None:intergenic
ACTGACTGGGAGACCTACTG+CGG 0.671960 3.2:+72235053 None:intergenic
GCTTTCTACAGGCAACCTCG+TGG 0.675676 3.2:-72236780 MS.gene77490:intron
GTAGGTAGATCGCTTTGACG+GGG 0.676212 3.2:+72237327 None:intergenic
GGGTGAACGAGAATAACGTG+GGG 0.732637 3.2:+72235608 None:intergenic
GGTGAACGAGAATAACGTGG+GGG 0.773739 3.2:+72235609 None:intergenic
TGAATAAAACCAAAACCACG+AGG 0.777977 3.2:+72236765 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTATTTTTTTTAATTATA+AGG - chr3.2:72237195-72237214 MS.gene77490:intron 0.0%
!! TTTGTATTTACTTAAAATAA+TGG - chr3.2:72237027-72237046 MS.gene77490:intron 10.0%
!! GTAAATGATGATAATAAATA+AGG + chr3.2:72236694-72236713 None:intergenic 15.0%
!! TGATTTGATCTTATATTATT+GGG - chr3.2:72235558-72235577 MS.gene77490:CDS 15.0%
!! TTTAATAATTGTGAGAAATT+AGG - chr3.2:72235388-72235407 MS.gene77490:intron 15.0%
!!! AAAATTTAGGGTTATATTAT+TGG - chr3.2:72235356-72235375 MS.gene77490:intron 15.0%
!!! AAATTTAGGGTTATATTATT+GGG - chr3.2:72235357-72235376 MS.gene77490:intron 15.0%
!!! TTGATTTGATCTTATATTAT+TGG - chr3.2:72235557-72235576 MS.gene77490:CDS 15.0%
!! AACAACAATCATTTAAACTT+TGG + chr3.2:72236669-72236688 None:intergenic 20.0%
!! AACAGTATACTTATAAGTAT+TGG + chr3.2:72236716-72236735 None:intergenic 20.0%
!! ATTATTGTTGAAATTCAAAG+TGG + chr3.2:72236017-72236036 None:intergenic 20.0%
!! ATTGAATGCTTTCAAAATTT+AGG - chr3.2:72235343-72235362 MS.gene77490:intron 20.0%
!! GATTGTTTATATGCAAATAA+GGG + chr3.2:72236454-72236473 None:intergenic 20.0%
!! TTGAATGCTTTCAAAATTTA+GGG - chr3.2:72235344-72235363 MS.gene77490:intron 20.0%
!!! AATTTAGGGTTATATTATTG+GGG - chr3.2:72235358-72235377 MS.gene77490:intron 20.0%
!!! TTTTGGTTTTATTCAATTTG+TGG - chr3.2:72235717-72235736 MS.gene77490:intron 20.0%
! AAATTGAAAAAGAAACGAAG+AGG + chr3.2:72235880-72235899 None:intergenic 25.0%
! AATAGATTGGTAGATTTCAT+TGG + chr3.2:72236244-72236263 None:intergenic 25.0%
! AATTATTATTAAGTGACCAC+TGG + chr3.2:72236991-72237010 None:intergenic 25.0%
! AATTGAAAAAGAAACGAAGA+GGG + chr3.2:72235879-72235898 None:intergenic 25.0%
! AATTTACTTGCAGTAATCAA+TGG + chr3.2:72236581-72236600 None:intergenic 25.0%
! ACATTTCAAACAACAAATTC+AGG + chr3.2:72236528-72236547 None:intergenic 25.0%
! ATAGATTGGTAGATTTCATT+GGG + chr3.2:72236243-72236262 None:intergenic 25.0%
! CTATTTGCATATAAACAGAA+GGG - chr3.2:72236259-72236278 MS.gene77490:intron 25.0%
! CTGTTTATATGCAAATAGAT+TGG + chr3.2:72236257-72236276 None:intergenic 25.0%
! GAATTTCAACAATAATTGTG+TGG - chr3.2:72236021-72236040 MS.gene77490:intron 25.0%
! GACTTTGAATGAATCAATAT+GGG - chr3.2:72235907-72235926 MS.gene77490:intron 25.0%
! GGATTGTTTATATGCAAATA+AGG + chr3.2:72236455-72236474 None:intergenic 25.0%
! TAATGTTTATGTTTCAGTAG+CGG - chr3.2:72236817-72236836 MS.gene77490:intron 25.0%
! TATAAATGTTTAGAAAGAGC+TGG - chr3.2:72237052-72237071 MS.gene77490:intron 25.0%
! TCATCTTAATTTCACACAAA+AGG - chr3.2:72235507-72235526 MS.gene77490:intron 25.0%
! TCTATTTGCATATAAACAGA+AGG - chr3.2:72236258-72236277 MS.gene77490:intron 25.0%
! TGACTTTGAATGAATCAATA+TGG - chr3.2:72235906-72235925 MS.gene77490:intron 25.0%
!! TGTCTTTTATTGCGTTATAA+TGG - chr3.2:72236100-72236119 MS.gene77490:intron 25.0%
!! TGTTGTTTGAAATGTAATGA+AGG - chr3.2:72236533-72236552 MS.gene77490:intron 25.0%
!!! CTTCGTTTCTTTTTCAATTT+TGG - chr3.2:72235880-72235899 MS.gene77490:intron 25.0%
!!! GGATTATAAGATTAGTTTAG+TGG - chr3.2:72235973-72235992 MS.gene77490:intron 25.0%
AACCCAGTGTAATAATCTTT+GGG + chr3.2:72235267-72235286 None:intergenic 30.0%
AATCAATGGCTAAATTTCAC+TGG + chr3.2:72236567-72236586 None:intergenic 30.0%
AATTGTGTGGTATACTAGTA+AGG - chr3.2:72236034-72236053 MS.gene77490:intron 30.0%
ATGAAATCTTCTTCAAGACT+TGG + chr3.2:72235491-72235510 None:intergenic 30.0%
CTATGTGTATTTACAGGAAA+CGG + chr3.2:72235949-72235968 None:intergenic 30.0%
GATTATGTATGTGTTTGTTC+CGG - chr3.2:72237144-72237163 MS.gene77490:intron 30.0%
GCTAAATTTCACTGGAAAAA+AGG + chr3.2:72236559-72236578 None:intergenic 30.0%
TAACCCAGTGTAATAATCTT+TGG + chr3.2:72235268-72235287 None:intergenic 30.0%
TACTGCAAGTAAATTACACT+AGG - chr3.2:72236586-72236605 MS.gene77490:intron 30.0%
TAGATTGGTAGATTTCATTG+GGG + chr3.2:72236242-72236261 None:intergenic 30.0%
TATAATAACATCGATGAGCT+CGG - chr3.2:72236502-72236521 MS.gene77490:intron 30.0%
TTAAACTTTGGATAAAACCC+AGG + chr3.2:72236657-72236676 None:intergenic 30.0%
TTATTGCGTTATAATGGTAC+AGG - chr3.2:72236106-72236125 MS.gene77490:intron 30.0%
! CAATTTTACTCACTGCATAT+GGG - chr3.2:72235605-72235624 MS.gene77490:CDS 30.0%
!! GTTGGGTTTTCTGTTTTATT+CGG - chr3.2:72235672-72235691 MS.gene77490:intron 30.0%
!! TAAAATTGGTGCTAAGAAGT+TGG + chr3.2:72235593-72235612 None:intergenic 30.0%
!!! GTGTTAATGCTTTTTTCGTT+GGG - chr3.2:72235655-72235674 MS.gene77490:intron 30.0%
!!! TGTGTTAATGCTTTTTTCGT+TGG - chr3.2:72235654-72235673 MS.gene77490:intron 30.0%
AATTACACTAGGCCAGTTTA+TGG - chr3.2:72236597-72236616 MS.gene77490:intron 35.0%
ACCCAGTGTAATAATCTTTG+GGG + chr3.2:72235266-72235285 None:intergenic 35.0%
ACGAGACATTAAAATGTCCT+GGG - chr3.2:72236637-72236656 MS.gene77490:CDS 35.0%
AGATTGGTAGATTTCATTGG+GGG + chr3.2:72236241-72236260 None:intergenic 35.0%
ATTACACTAGGCCAGTTTAT+GGG - chr3.2:72236598-72236617 MS.gene77490:intron 35.0%
CAATATGGGATACTTGCATT+TGG - chr3.2:72235921-72235940 MS.gene77490:intron 35.0%
CCATATGCAGTGAGTAAAAT+TGG + chr3.2:72235607-72235626 None:intergenic 35.0%
CCTAGACTATGTGTATTTAC+AGG + chr3.2:72235955-72235974 None:intergenic 35.0%
CCTGTAAATACACATAGTCT+AGG - chr3.2:72235952-72235971 MS.gene77490:intron 35.0%
CTAAACGAAGGGAATATTCA+AGG - chr3.2:72236959-72236978 MS.gene77490:intron 35.0%
CTTGAATATTCCCTTCGTTT+AGG + chr3.2:72236961-72236980 None:intergenic 35.0%
GAAGGGAATATTCAAGGTAT+TGG - chr3.2:72236965-72236984 MS.gene77490:intron 35.0%
GATGCGAAATATCATATGGA+TGG - chr3.2:72235757-72235776 MS.gene77490:intron 35.0%
GGGAGATAAATATCCTTAAG+AGG + chr3.2:72235246-72235265 None:intergenic 35.0%
GTGATACAGATCTACAAAAC+AGG + chr3.2:72237235-72237254 None:intergenic 35.0%
TATAAACAGAAGGGTAACCT+TGG - chr3.2:72236268-72236287 MS.gene77490:intron 35.0%
TATAAACAGCCTGAAATCCA+AGG + chr3.2:72236143-72236162 None:intergenic 35.0%
TATTCAATTTGTGGATCCTG+CGG - chr3.2:72235726-72235745 MS.gene77490:intron 35.0%
TCATAGATTCAAACCGAGAT+CGG + chr3.2:72236480-72236499 None:intergenic 35.0%
TCCCCAAAGATTATTACACT+GGG - chr3.2:72235262-72235281 MS.gene77490:intron 35.0%
TCTTGTGTAAAAACAGGGAA+AGG - chr3.2:72236354-72236373 MS.gene77490:intron 35.0%
TGAATAAAACCAAAACCACG+AGG + chr3.2:72235712-72235731 None:intergenic 35.0%
TGCTGATGCGAAATATCATA+TGG - chr3.2:72235753-72235772 MS.gene77490:intron 35.0%
TTAATAAGTTCCGTGATCGA+TGG + chr3.2:72236179-72236198 None:intergenic 35.0%
! ATACTAGTAAGGCCCTATTT+TGG - chr3.2:72236045-72236064 MS.gene77490:intron 35.0%
! CCAATTTTACTCACTGCATA+TGG - chr3.2:72235604-72235623 MS.gene77490:CDS 35.0%
!! ACATACTGTTGGTTCTAGTT+TGG - chr3.2:72237081-72237100 MS.gene77490:intron 35.0%
!! CATACTGTTGGTTCTAGTTT+GGG - chr3.2:72237082-72237101 MS.gene77490:intron 35.0%
!! TGTTTTATTCGGCTTTCTAC+AGG - chr3.2:72235683-72235702 MS.gene77490:intron 35.0%
!!! GATAACTGTTGTTTTTGCTG+AGG - chr3.2:72235801-72235820 MS.gene77490:intron 35.0%
!!! TTTCCCTGTTTTTACACAAG+AGG + chr3.2:72236355-72236374 None:intergenic 35.0%
AAAGAAGCCAACTGAGATGA+GGG - chr3.2:72235831-72235850 MS.gene77490:intron 40.0%
ACAGCCTCTTGTGTAAAAAC+AGG - chr3.2:72236348-72236367 MS.gene77490:intron 40.0%
ACTTAAACCACCATCGATCA+CGG - chr3.2:72236166-72236185 MS.gene77490:intron 40.0%
ATATGCAAATAAGGGCAACC+CGG + chr3.2:72236446-72236465 None:intergenic 40.0%
ATGGATGGTCAAGTTCTTCT+TGG - chr3.2:72235772-72235791 MS.gene77490:intron 40.0%
ATGGTCAAGTTCTTCTTGGT+AGG - chr3.2:72235776-72235795 MS.gene77490:intron 40.0%
CAAAATGACCGAAAGGTCTA+CGG + chr3.2:72235221-72235240 None:intergenic 40.0%
CAATGACAAGACCCATAAAC+TGG + chr3.2:72236612-72236631 None:intergenic 40.0%
CAGCCTCTTGTGTAAAAACA+GGG - chr3.2:72236349-72236368 MS.gene77490:intron 40.0%
CGTACAATACACCAAATGGT+GGG - chr3.2:72236380-72236399 MS.gene77490:intron 40.0%
CTCCCCAAAGATTATTACAC+TGG - chr3.2:72235261-72235280 MS.gene77490:intron 40.0%
GAATATTCCCTTCGTTTAGG+AGG + chr3.2:72236958-72236977 None:intergenic 40.0%
GACGAGACATTAAAATGTCC+TGG - chr3.2:72236636-72236655 MS.gene77490:CDS 40.0%
GATTGGTAGATTTCATTGGG+GGG + chr3.2:72236240-72236259 None:intergenic 40.0%
GCGTTATAATGGTACAGGTA+GGG - chr3.2:72236111-72236130 MS.gene77490:intron 40.0%
GTTGTTGTCATGTGACTGTA+AGG - chr3.2:72236304-72236323 MS.gene77490:intron 40.0%
GTTTATGTTTCAGTAGCGGT+CGG - chr3.2:72236821-72236840 MS.gene77490:intron 40.0%
TGCGTTATAATGGTACAGGT+AGG - chr3.2:72236110-72236129 MS.gene77490:intron 40.0%
TGGTCAAGTTCTTCTTGGTA+GGG - chr3.2:72235777-72235796 MS.gene77490:intron 40.0%
TTCTGCTTGTTTCAGCTAAG+AGG - chr3.2:72236767-72236786 MS.gene77490:CDS 40.0%
TTGTAGATCTGTATCACCTG+AGG - chr3.2:72237238-72237257 MS.gene77490:CDS 40.0%
TTGTTCCGGTCAAAAGATGT+TGG - chr3.2:72237158-72237177 MS.gene77490:intron 40.0%
! TATGGGTCTCGTTTCGATTT+TGG - chr3.2:72235622-72235641 MS.gene77490:CDS 40.0%
!! ATATTCAAGGTATTGGCCAG+TGG - chr3.2:72236972-72236991 MS.gene77490:intron 40.0%
AAAGGTCTACGGAGATCTTC+AGG + chr3.2:72235210-72235229 None:intergenic 45.0%
AAGGTTACGAACAAGGAGAC+TGG + chr3.2:72235172-72235191 None:intergenic 45.0%
AGAGGACCAAAATGACCGAA+AGG + chr3.2:72235228-72235247 None:intergenic 45.0%
ATAAACAATCCCGCCGATCT+CGG - chr3.2:72236464-72236483 MS.gene77490:intron 45.0%
ATAAGTTCCGTGATCGATGG+TGG + chr3.2:72236176-72236195 None:intergenic 45.0%
ATTCCCTTCGTTTAGGAGGA+GGG + chr3.2:72236954-72236973 None:intergenic 45.0%
CTCTTCCGAGGACCAAAATA+GGG + chr3.2:72236060-72236079 None:intergenic 45.0%
CTGTATCACCTGAGGATAGA+AGG - chr3.2:72237246-72237265 MS.gene77490:CDS 45.0%
CTTGTTTCAGCTAAGAGGTG+AGG - chr3.2:72236772-72236791 MS.gene77490:CDS 45.0%
CTTTCACTGGACTCTGACTA+CGG + chr3.2:72237349-72237368 None:intergenic 45.0%
GAAAGAAGCCAACTGAGATG+AGG - chr3.2:72235830-72235849 MS.gene77490:intron 45.0%
GAAGATCTCCGTAGACCTTT+CGG - chr3.2:72235210-72235229 MS.gene77490:CDS 45.0%
GCGTACAATACACCAAATGG+TGG - chr3.2:72236379-72236398 MS.gene77490:intron 45.0%
GCTGCGTACAATACACCAAA+TGG - chr3.2:72236376-72236395 MS.gene77490:intron 45.0%
GGGTTCAAACCTTGGATTTC+AGG - chr3.2:72236131-72236150 MS.gene77490:intron 45.0%
GTCATGTGACTGTAAGGTCA+CGG - chr3.2:72236310-72236329 MS.gene77490:intron 45.0%
TACAGGTAGGGTTCAAACCT+TGG - chr3.2:72236123-72236142 MS.gene77490:intron 45.0%
TAGATTCAAACCGAGATCGG+CGG + chr3.2:72236477-72236496 None:intergenic 45.0%
TATTCCCTTCGTTTAGGAGG+AGG + chr3.2:72236955-72236974 None:intergenic 45.0%
TCATGTGACTGTAAGGTCAC+GGG - chr3.2:72236311-72236330 MS.gene77490:intron 45.0%
TCTCTTCCGAGGACCAAAAT+AGG + chr3.2:72236061-72236080 None:intergenic 45.0%
TGGTAGGTAGATCGCTTTGA+CGG + chr3.2:72235152-72235171 None:intergenic 45.0%
TTACGAACAAGGAGACTGGT+AGG + chr3.2:72235168-72235187 None:intergenic 45.0%
TTCCGGTCAAAAGATGTTGG+TGG - chr3.2:72237161-72237180 MS.gene77490:intron 45.0%
! CGTAGACCTTTCGGTCATTT+TGG - chr3.2:72235219-72235238 MS.gene77490:CDS 45.0%
! CTCCACCAACATCTTTTGAC+CGG + chr3.2:72237166-72237185 None:intergenic 45.0%
! TTACACAAGAGGCTGTTTCC+AGG + chr3.2:72236344-72236363 None:intergenic 45.0%
! TTTTGGTCCTCGGAAGAGAT+GGG - chr3.2:72236062-72236081 MS.gene77490:intron 45.0%
!! ATTTTGGTCCTCGGAAGAGA+TGG - chr3.2:72236061-72236080 MS.gene77490:intron 45.0%
!! CGGTCATTTTGGTCCTCTTA+AGG - chr3.2:72235230-72235249 MS.gene77490:CDS 45.0%
!!! TAAGGCCCTATTTTGGTCCT+CGG - chr3.2:72236052-72236071 MS.gene77490:intron 45.0%
AGATGAGGGTCAGAGAGAGA+AGG - chr3.2:72235845-72235864 MS.gene77490:intron 50.0%
AGATTCAAACCGAGATCGGC+GGG + chr3.2:72236476-72236495 None:intergenic 50.0%
AGTCAATCCCATCTCTTCCG+AGG + chr3.2:72236072-72236091 None:intergenic 50.0%
ATTCCCCTCCTCCTAAACGA+AGG - chr3.2:72236947-72236966 MS.gene77490:intron 50.0%
CAACTTTACCAGTTGCGCCA+AGG + chr3.2:72236288-72236307 None:intergenic 50.0%
CATGGCGAAGGTTACGAACA+AGG + chr3.2:72235179-72235198 None:intergenic 50.0%
CGTAGTCAGAGTCCAGTGAA+AGG - chr3.2:72237347-72237366 MS.gene77490:CDS 50.0%
CTTCTCACATCCCCGTTCTT+GGG + chr3.2:72237326-72237345 None:intergenic 50.0%
GATCACAACACAGCAGAGAG+AGG - chr3.2:72237282-72237301 MS.gene77490:CDS 50.0%
GATCTTCAGGCCTACAGTCA+TGG + chr3.2:72235197-72235216 None:intergenic 50.0%
GGGGTGAACGAGAATAACGT+GGG + chr3.2:72236870-72236889 None:intergenic 50.0%
GGGTGAACGAGAATAACGTG+GGG + chr3.2:72236869-72236888 None:intergenic 50.0%
GGTAGGTAGATCGCTTTGAC+GGG + chr3.2:72235151-72235170 None:intergenic 50.0%
GGTGAACGAGAATAACGTGG+GGG + chr3.2:72236868-72236887 None:intergenic 50.0%
GTAACCTTCGCCATGACTGT+AGG - chr3.2:72235184-72235203 MS.gene77490:CDS 50.0%
GTAGGTAGATCGCTTTGACG+GGG + chr3.2:72235150-72235169 None:intergenic 50.0%
TCTCTGACCCTCATCTCAGT+TGG + chr3.2:72235841-72235860 None:intergenic 50.0%
TTCCCCTCCTCCTAAACGAA+GGG - chr3.2:72236948-72236967 MS.gene77490:intron 50.0%
TTCCCTTCGTTTAGGAGGAG+GGG + chr3.2:72236953-72236972 None:intergenic 50.0%
! GATAGAAGGCACAGTCGAGA+AGG - chr3.2:72237260-72237279 MS.gene77490:CDS 50.0%
! TACAGGCAACCTCGTGGTTT+TGG - chr3.2:72235700-72235719 MS.gene77490:intron 50.0%
!! GCTGGACTAGCACATACTGT+TGG - chr3.2:72237070-72237089 MS.gene77490:intron 50.0%
AAGGGTAACCTTGGCGCAAC+TGG - chr3.2:72236277-72236296 MS.gene77490:intron 55.0%
AAGGTCACGGGTTCAAGTCC+TGG - chr3.2:72236323-72236342 MS.gene77490:intron 55.0%
AAGTCCGAGCCGTGATGTCA+GGG - chr3.2:72237391-72237410 MS.gene77490:CDS 55.0%
ACTGACTGGGAGACCTACTG+CGG + chr3.2:72237424-72237443 None:intergenic 55.0%
ATCTGTGACGAGGTGGAGAC+CGG + chr3.2:72236900-72236919 None:intergenic 55.0%
CGACTGTGCCTTCTATCCTC+AGG + chr3.2:72237257-72237276 None:intergenic 55.0%
CGGGGTGAACGAGAATAACG+TGG + chr3.2:72236871-72236890 None:intergenic 55.0%
CTCTCGACTGAGCCTTTCAC+TGG + chr3.2:72237362-72237381 None:intergenic 55.0%
GAAGAAGTCCAAGTCCTCGC+CGG - chr3.2:72235115-72235134 MS.gene77490:CDS 55.0%
GCTTCTCACATCCCCGTTCT+TGG + chr3.2:72237327-72237346 None:intergenic 55.0%
GCTTTCTACAGGCAACCTCG+TGG - chr3.2:72235694-72235713 MS.gene77490:intron 55.0%
GGGATGCTTCCCTGACATCA+CGG + chr3.2:72237403-72237422 None:intergenic 55.0%
GTCGGCATTCTGATCGAAGG+AGG - chr3.2:72236839-72236858 MS.gene77490:intron 55.0%
TCACGCTCTCCACCCAAGAA+CGG - chr3.2:72237311-72237330 MS.gene77490:CDS 55.0%
ACGCTCTCCACCCAAGAACG+GGG - chr3.2:72237313-72237332 MS.gene77490:CDS 60.0%
ACTGAAGCTCCCGCATACGC+AGG + chr3.2:72236420-72236439 None:intergenic 60.0%
AGGTGGAGACCGGGAATAGC+GGG + chr3.2:72236890-72236909 None:intergenic 60.0%
ATGCGGGAGCTTCAGTGCAC+CGG - chr3.2:72236424-72236443 MS.gene77490:intron 60.0%
CAAGTCCGAGCCGTGATGTC+AGG - chr3.2:72237390-72237409 MS.gene77490:CDS 60.0%
CACGCTCTCCACCCAAGAAC+GGG - chr3.2:72237312-72237331 MS.gene77490:CDS 60.0%
CAGGCCTACAGTCATGGCGA+AGG + chr3.2:72235191-72235210 None:intergenic 60.0%
CCACCGCGTTACAGCAGAAG+AGG - chr3.2:72235081-72235100 MS.gene77490:CDS 60.0%
CCGCCTCTTCTGCTGTAACG+CGG + chr3.2:72235087-72235106 None:intergenic 60.0%
CCGCGTTACAGCAGAAGAGG+CGG - chr3.2:72235084-72235103 MS.gene77490:CDS 60.0%
CCTCTTCTGCTGTAACGCGG+TGG + chr3.2:72235084-72235103 None:intergenic 60.0%
CGAGAGCGAGATCTGTGACG+AGG + chr3.2:72236910-72236929 None:intergenic 60.0%
CGTCACAGATCTCGCTCTCG+CGG - chr3.2:72236910-72236929 MS.gene77490:intron 60.0%
CGTTACAGCAGAAGAGGCGG+CGG - chr3.2:72235087-72235106 MS.gene77490:CDS 60.0%
CTCACATCCCCGTTCTTGGG+TGG + chr3.2:72237323-72237342 None:intergenic 60.0%
CTCGTTCACCCCGCTATTCC+CGG - chr3.2:72236878-72236897 MS.gene77490:intron 60.0%
CTGAAGCTCCCGCATACGCA+GGG + chr3.2:72236419-72236438 None:intergenic 60.0%
CTGACTGGGAGACCTACTGC+GGG + chr3.2:72237423-72237442 None:intergenic 60.0%
CTTCTGCTGTAACGCGGTGG+TGG + chr3.2:72235081-72235100 None:intergenic 60.0%
GAGCGAGATCTGTGACGAGG+TGG + chr3.2:72236907-72236926 None:intergenic 60.0%
GAGGTGGAGACCGGGAATAG+CGG + chr3.2:72236891-72236910 None:intergenic 60.0%
GCGGTCGGCATTCTGATCGA+AGG - chr3.2:72236836-72236855 MS.gene77490:intron 60.0%
GCTTCCCTGACATCACGGCT+CGG + chr3.2:72237398-72237417 None:intergenic 60.0%
TCTGTGACGAGGTGGAGACC+GGG + chr3.2:72236899-72236918 None:intergenic 60.0%
TTCGCATCAGCAGCATCCGC+AGG + chr3.2:72235745-72235764 None:intergenic 60.0%
! CAAATGGTGGGACCCCTTCC+CGG - chr3.2:72236392-72236411 MS.gene77490:intron 60.0%
! CTGACATCACGGCTCGGACT+TGG + chr3.2:72237392-72237411 None:intergenic 60.0%
! TTTGACGGGGAGCGTAACGC+CGG + chr3.2:72235137-72235156 None:intergenic 60.0%
!! CTGTAACGCGGTGGTGGAGA+TGG + chr3.2:72235075-72235094 None:intergenic 60.0%
!! TCAGGGAAGCATCCCGCAGT+AGG - chr3.2:72237408-72237427 MS.gene77490:CDS 60.0%
CATACGCAGGGTCCGGGAAG+GGG + chr3.2:72236407-72236426 None:intergenic 65.0%
CGGGAAGGGGTCCCACCATT+TGG + chr3.2:72236394-72236413 None:intergenic 65.0%
CTTCCCGGACCCTGCGTATG+CGG - chr3.2:72236407-72236426 MS.gene77490:intron 65.0%
GCATACGCAGGGTCCGGGAA+GGG + chr3.2:72236408-72236427 None:intergenic 65.0%
GGTGGAGACCGGGAATAGCG+GGG + chr3.2:72236889-72236908 None:intergenic 65.0%
TACAGCAGAAGAGGCGGCGG+AGG - chr3.2:72235090-72235109 MS.gene77490:CDS 65.0%
TGCGGGAGCTTCAGTGCACC+GGG - chr3.2:72236425-72236444 MS.gene77490:intron 65.0%
TTCCCGGACCCTGCGTATGC+GGG - chr3.2:72236408-72236427 MS.gene77490:intron 65.0%
AGCAGAAGAGGCGGCGGAGG+AGG - chr3.2:72235093-72235112 MS.gene77490:CDS 70.0%
CGCATACGCAGGGTCCGGGA+AGG + chr3.2:72236409-72236428 None:intergenic 70.0%
CTCCCGCATACGCAGGGTCC+GGG + chr3.2:72236413-72236432 None:intergenic 70.0%
GCGTAACGCCGGCGAGGACT+TGG + chr3.2:72235126-72235145 None:intergenic 70.0%
GCTCCCGCATACGCAGGGTC+CGG + chr3.2:72236414-72236433 None:intergenic 70.0%
!! CGGGGAGCGTAACGCCGGCG+AGG + chr3.2:72235132-72235151 None:intergenic 80.0%


Chromosome Type Strat End Strand Name
chr3.2 gene 72235051 72237445 72235051 ID=MS.gene77490
chr3.2 mRNA 72235051 72237445 72235051 ID=MS.gene77490.t1;Parent=MS.gene77490
chr3.2 exon 72237213 72237445 72237213 ID=MS.gene77490.t1.exon1;Parent=MS.gene77490.t1
chr3.2 CDS 72237213 72237445 72237213 ID=cds.MS.gene77490.t1;Parent=MS.gene77490.t1
chr3.2 exon 72236630 72236791 72236630 ID=MS.gene77490.t1.exon2;Parent=MS.gene77490.t1
chr3.2 CDS 72236630 72236791 72236630 ID=cds.MS.gene77490.t1;Parent=MS.gene77490.t1
chr3.2 exon 72235516 72235662 72235516 ID=MS.gene77490.t1.exon3;Parent=MS.gene77490.t1
chr3.2 CDS 72235516 72235662 72235516 ID=cds.MS.gene77490.t1;Parent=MS.gene77490.t1
chr3.2 exon 72235051 72235252 72235051 ID=MS.gene77490.t1.exon4;Parent=MS.gene77490.t1
chr3.2 CDS 72235051 72235252 72235051 ID=cds.MS.gene77490.t1;Parent=MS.gene77490.t1
Gene Sequence

>MS.gene77490

ATGAGAGGAAGAAGCTACAGTCCATCTCCACCACCGCGTTACAGCAGAAGAGGCGGCGGAGGAGGAAGAAGTCCAAGTCCTCGCCGGCGTTACGCTCCCCGTCAAAGCGATCTACCTACCAGTCTCCTTGTTCGTAACCTTCGCCATGACTGTAGGCCTGAAGATCTCCGTAGACCTTTCGGTCATTTTGGTCCTCTTAAGGATATTTATCTCCCCAAAGATTATTACACTGGGTTAGTACTAATCAATCTTCAATTTCACTCAATTATGTTTTCGTCTGCTCTGAATTTTCATTGAATGCTTTCAAAATTTAGGGTTATATTATTGGGGCTTTTTTTTTAATAATTGTGAGAAATTAGGTTTATCAGTGATTTAGAGTTTTGAAGACATGTATGAAGTAAGTAGAAGATGTTATTGATAATGAAGATGAAGATCTTCCAAGTCTTGAAGAAGATTTCATCTTAATTTCACACAAAAGGTCAGCAGCATAGTGCTTGCTTGCTTGCTTGATTTGATCTTATATTATTGGGACTGTTTCACCAACTTCTTAGCACCAATTTTACTCACTGCATATGGGTCTCGTTTCGATTTTGGTCTATTTCATGTGTTAATGCTTTTTTCGTTGGGTTTTCTGTTTTATTCGGCTTTCTACAGGCAACCTCGTGGTTTTGGTTTTATTCAATTTGTGGATCCTGCGGATGCTGCTGATGCGAAATATCATATGGATGGTCAAGTTCTTCTTGGTAGGGAGATAACTGTTGTTTTTGCTGAGGAAAATAGAAAGAAGCCAACTGAGATGAGGGTCAGAGAGAGAAGGTAAGATTTCCCTCTTCGTTTCTTTTTCAATTTTGGATTTGACTTTGAATGAATCAATATGGGATACTTGCATTTGGAACCGTTTCCTGTAAATACACATAGTCTAGGATTATAAGATTAGTTTAGTGGTTATTTATGCTATTGTTTCCACTTTGAATTTCAACAATAATTGTGTGGTATACTAGTAAGGCCCTATTTTGGTCCTCGGAAGAGATGGGATTGACTTTTGTAGCTGTCTTTTATTGCGTTATAATGGTACAGGTAGGGTTCAAACCTTGGATTTCAGGCTGTTTATAATCACTTAAACCACCATCGATCACGGAACTTATTAAATATTTGATAGATAAAATACATAGTCTAAAATAATTTACCCCCCAATGAAATCTACCAATCTATTTGCATATAAACAGAAGGGTAACCTTGGCGCAACTGGTAAAGTTGTTGTCATGTGACTGTAAGGTCACGGGTTCAAGTCCTGGAAACAGCCTCTTGTGTAAAAACAGGGAAAGGCTGCGTACAATACACCAAATGGTGGGACCCCTTCCCGGACCCTGCGTATGCGGGAGCTTCAGTGCACCGGGTTGCCCTTATTTGCATATAAACAATCCCGCCGATCTCGGTTTGAATCTATGATTTATAATAACATCGATGAGCTCGGCCTGAATTTGTTGTTTGAAATGTAATGAAGGCCTTTTTTCCAGTGAAATTTAGCCATTGATTACTGCAAGTAAATTACACTAGGCCAGTTTATGGGTCTTGTCATTGTTTTGACGAGACATTAAAATGTCCTGGGTTTTATCCAAAGTTTAAATGATTGTTGTTTTCCTTATTTATTATCATCATTTACCAATACTTATAAGTATACTGTTTTAAGCTTCTTCATTGCAATGTTGCATAAATTTCTGCTTGTTTCAGCTAAGAGGTGAGGTGAAATTCTGATTATCTATTTTTAATGTTTATGTTTCAGTAGCGGTCGGCATTCTGATCGAAGGAGGTCTCCCCCACGTTATTCTCGTTCACCCCGCTATTCCCGGTCTCCACCTCGTCACAGATCTCGCTCTCGCGGCAGTCGTGACTATTATTCCCCTCCTCCTAAACGAAGGGAATATTCAAGGTATTGGCCAGTGGTCACTTAATAATAATTCATTTTATTGCATATATTTGTATTTACTTAAAATAATGGTATATAAATGTTTAGAAAGAGCTGGACTAGCACATACTGTTGGTTCTAGTTTGGGTCGAAACAATCTGATGTGCAGTGTGATTAGTTGAACTTTGATTATGTATGTGTTTGTTCCGGTCAAAAGATGTTGGTGGAGTCTTTGCTAATTTATTTTTTTTAATTATAAGGCTTTTCATACATTGCCTGTTTTGTAGATCTGTATCACCTGAGGATAGAAGGCACAGTCGAGAAGGATCACAACACAGCAGAGAGAGGTCATACTCACGCTCTCCACCCAAGAACGGGGATGTGAGAAGCCGTAGTCAGAGTCCAGTGAAAGGCTCAGTCGAGAGCAGAAGTCCAAGTCCGAGCCGTGATGTCAGGGAAGCATCCCGCAGTAGGTCTCCCAGTCAGTGA

Protein sequence

>MS.gene77490.t1

MRGRSYSPSPPPRYSRRGGGGGRSPSPRRRYAPRQSDLPTSLLVRNLRHDCRPEDLRRPFGHFGPLKDIYLPKDYYTGQPRGFGFIQFVDPADAADAKYHMDGQVLLGREITVVFAEENRKKPTEMRVRERSSGRHSDRRRSPPRYSRSPRYSRSPPRHRSRSRGSRDYYSPPPKRREYSRSVSPEDRRHSREGSQHSRERSYSRSPPKNGDVRSRSQSPVKGSVESRSPSPSRDVREASRSRSPSQ