AlfalfaGEDB | MS.gene77974

M. sativa cultivar XinJiangDaYe / MS.gene77974

KEGG: -
GO: GO:0000166 GO:0003674 GO:0005488 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0036094 GO:0043167 GO:0043168 GO:0043531 GO:0097159 GO:0097367 GO:1901265 GO:1901363
PFAM: PF00931.25 PF13855.9 PF18052.4

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene77974.t1	RHN65936.1	55.8	1286	175	10	1	928	1	1251	0.00E+00	1144

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene77974.t1	Q9LRR4	24.7	912	405	17	9	644	8	913	7.5e-56	220.7

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene77974.t1	A0A396IJT6	55.8	1286	175	10	1	928	1	1251	0.0e+00	1144.0

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene053147	MS.gene77974	0.800318	1.52E-48	-1.69E-46
MS.gene054291	MS.gene77974	-0.805227	1.48E-49	-1.69E-46
MS.gene054468	MS.gene77974	0.82346	1.37E-53	-1.69E-46
MS.gene05595	MS.gene77974	0.814716	1.34E-51	-1.69E-46
MS.gene057156	MS.gene77974	-0.801727	7.85E-49	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene77974.t1	MTR_3g023030	73.114	729	162	4	204	928	459	1157	0.0	1032
MS.gene77974.t1	MTR_3g023030	89.726	146	13	1	1	144	1	146	1.43e-58	220
MS.gene77974.t1	MTR_3g023030	76.190	84	20	0	123	206	237	320	3.21e-30	130
MS.gene77974.t1	MTR_3g023030	73.060	683	150	4	250	928	471	1123	0.0	962
MS.gene77974.t1	MTR_3g023030	89.726	146	13	1	1	144	1	146	1.29e-58	220
MS.gene77974.t1	MTR_3g023030	76.190	84	20	0	123	206	237	320	3.09e-30	130
MS.gene77974.t1	MTR_3g027200	69.524	735	185	7	204	930	457	1160	0.0	944
MS.gene77974.t1	MTR_3g027200	84.722	144	22	0	1	144	1	144	2.02e-63	234
MS.gene77974.t1	MTR_3g027200	73.171	82	22	0	123	204	235	316	2.56e-27	120
MS.gene77974.t1	MTR_3g027470	64.738	726	160	9	204	927	366	997	0.0	866

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene77974.t1	AT3G14470	34.518	591	320	16	208	776	462	1007	2.45e-82	289
MS.gene77974.t1	AT3G14470	34.899	149	87	3	5	144	4	151	2.77e-14	78.2
MS.gene77974.t1	AT3G14470	34.518	591	320	16	208	776	462	1007	2.45e-82	289
MS.gene77974.t1	AT3G14470	34.899	149	87	3	5	144	4	151	2.77e-14	78.2
MS.gene77974.t1	AT3G14460	39.198	449	254	8	208	640	454	899	9.48e-80	285
MS.gene77974.t1	AT3G14460	30.673	401	178	15	556	929	1093	1420	7.60e-24	109
MS.gene77974.t1	AT1G69550	29.599	598	328	26	315	901	711	1226	3.80e-14	77.8
MS.gene77974.t1	AT1G27170	25.385	520	286	23	320	805	716	1167	3.52e-11	68.2
MS.gene77974.t1	AT1G58848	24.848	495	294	18	317	804	581	1004	4.99e-11	67.8
MS.gene77974.t1	AT1G59218	24.848	495	294	18	317	804	581	1004	4.99e-11	67.8

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Find 228 sgRNAs with CRISPR-Local

Find 350 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACATTAAGGGACAAGAA+AGG	0.572567	3.4:+14561286	None:intergenic
AAAACTGATTGGTTCAAGAG+AGG	0.649856	3.4:-14560702	MS.gene77974:CDS
AAAACTGATTGGTTCGAGAG+AGG	0.627248	3.4:-14560627	MS.gene77974:CDS
AAAAGGAGGGAGGAGAGCGT+TGG	0.608466	3.4:-14560307	MS.gene77974:CDS
AAACGTGGAGTCGTTCCCAG+AGG	0.751297	3.4:-14560546	MS.gene77974:CDS
AAACTGTCCCAATTTGAAAA+GGG	0.505405	3.4:-14561185	MS.gene77974:CDS
AAAGAAAGACTGTTCAGAGC+TGG	0.573340	3.4:+14560509	None:intergenic
AAAGAAGATGCCAAAGCATA+TGG	0.384120	3.4:-14561815	MS.gene77974:CDS
AAAGAGTTGGGATTGGGAGA+AGG	0.516841	3.4:-14563380	MS.gene77974:intron
AAAGCCTTTCAATAAAAGGA+TGG	0.502939	3.4:-14560865	MS.gene77974:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAACATTAAGGGACAAGAA+AGG	+	chr3.4:14561560-14561579	None:intergenic	30.0%
AAACTGTCCCAATTTGAAAA+GGG	-	chr3.4:14561658-14561677	MS.gene77974:CDS	30.0%
AAAGCCTTTCAATAAAAGGA+TGG	-	chr3.4:14561978-14561997	MS.gene77974:CDS	30.0%
AAATGGCAGTTAGTATTCTT+TGG	+	chr3.4:14563229-14563248	None:intergenic	30.0%
AACAATTCATATTGAAGGGT+TGG	-	chr3.4:14561148-14561167	MS.gene77974:CDS	30.0%
AACTTCAACTCTTCAAGAAA+GGG	+	chr3.4:14561899-14561918	None:intergenic	30.0%
AAGATGAATTGATCAAGCTT+TGG	-	chr3.4:14560379-14560398	MS.gene77974:CDS	30.0%
AAGCCTTTCAATAAAAGGAT+GGG	-	chr3.4:14561979-14561998	MS.gene77974:CDS	30.0%
AAGGTAATAGCTTTCCAAAT+TGG	-	chr3.4:14561360-14561379	MS.gene77974:CDS	30.0%
ACAATTCATATTGAAGGGTT+GGG	-	chr3.4:14561149-14561168	MS.gene77974:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.4	gene	14559052	14563813	14559052	ID=MS.gene77974
chr3.4	mRNA	14559052	14563813	14559052	ID=MS.gene77974.t1;Parent=MS.gene77974
chr3.4	exon	14563381	14563813	14563381	ID=MS.gene77974.t1.exon1;Parent=MS.gene77974.t1
chr3.4	CDS	14563381	14563813	14563381	ID=cds.MS.gene77974.t1;Parent=MS.gene77974.t1
chr3.4	exon	14562866	14563044	14562866	ID=MS.gene77974.t1.exon2;Parent=MS.gene77974.t1
chr3.4	CDS	14562866	14563044	14562866	ID=cds.MS.gene77974.t1;Parent=MS.gene77974.t1
chr3.4	exon	14560250	14562442	14560250	ID=MS.gene77974.t1.exon3;Parent=MS.gene77974.t1
chr3.4	CDS	14560250	14562442	14560250	ID=cds.MS.gene77974.t1;Parent=MS.gene77974.t1
chr3.4	exon	14559962	14560093	14559962	ID=MS.gene77974.t1.exon4;Parent=MS.gene77974.t1
chr3.4	CDS	14559962	14560093	14559962	ID=cds.MS.gene77974.t1;Parent=MS.gene77974.t1
chr3.4	exon	14559454	14559542	14559454	ID=MS.gene77974.t1.exon5;Parent=MS.gene77974.t1
chr3.4	CDS	14559454	14559542	14559454	ID=cds.MS.gene77974.t1;Parent=MS.gene77974.t1
chr3.4	exon	14559052	14559082	14559052	ID=MS.gene77974.t1.exon6;Parent=MS.gene77974.t1
chr3.4	CDS	14559052	14559082	14559052	ID=cds.MS.gene77974.t1;Parent=MS.gene77974.t1

Gene Sequence

>MS.gene77974

ATGGCAGAATTGGTAGCTGGGGCATTTCTTCAGTCTTCCTTTCAAGTGATTTTTGAGAAGTTGGCTTCAGTTGATATCAGAAACTATTTCAGTAGTAACAATGTTGATGAACTTGTGAAAGAACTTCATACTGCACTTGATTCTATCAACCTAGTACTGGACGAAGCAGAGATAAAGCAGTACCAAATTCCACTTGTGAAGAAGTGGCTTGATGAACTTAAACATGTTATTTATGAGGCAGACCAACTATTAGATGAGATTTCTACTGATGAAATGATAAATAAGCTGAAAGCTGAATCTGAACCACTTACCACCAATTTATTGGGCTTGGTTTCAGCTTTAACTACAAATCCATTTGAATCTAGGCTCAATGAACAACTGGACAAACTAGAACTTCTTGCAAAGCAAAAGAAAGAGTTGGGATTGGGAGAAGGTCTTAAAGCTAGTAAAGAAGGCTTAGTCAGTTGGAAACCTTCAAAAAGATTGTCATCTACAGCTCTCATGGATGAGTCAAGCATATATGGTAGAGATGATGATAAGGACAAGTTAATCAAGTTTTTACTTGCAGGCAATGACAGTGGCAACCGGGTTCCAATAATCAGCATAGTCAGTTTAGGAGGGATGGGGAAAACCACCCTTGCTAAGCTTGTGTACAATGACAACAAGATAGAGGAGCATTTTGAGCTTAAAGCATGGGTCTATGTTTCAGAATCTTTTGATGTCGTTGGACTCACCAAAGCAATTCTTAAGTCATTTAATTCTTCGGCAGATGGTGAAGACTTGAATCTACTCCAACATCAACTCCAACACATGTTAATGGGAAAGAAATACTTGCTTGTTTTAGATGATATCTGGAACGGGGATGCAGAATGTTGGGAGCTGTTACTTCTTCCCTTTAACCATGGATCTTCTGGAAGTAAGATTATCGTGACAACACGTGAAAAGGAGGTAGCATATCATGTTTTAAAATCCACTGAGTTATTTGATTTACAGAAATTGGAAACAAGCCATTGTTGGAGTTTATTTGTGACACATGCTTTTCAAGGAAAAAGTGTGTGTGAATATCCAAATCTTGAATCAATTGGCAGGAAATTGGTGAAGAAGTGTGGAGGGTTGCCTTTAGCTGTAAAAACACTGGGGCAACTATTACGAAGAAAATTCTCTCAACATGAATGGTATGAGATATTGGAGACTGATATGTGGCGTTTATCAGACAGGGACCATTCCATTAACTCAGTACTGAGATTGAGTTACCATAACATCCCTTCCAATCTAAAGCGTTGCTTTGCCTATTGTTCCATTTTTCCCAAGGGTTATAAATTTGAAAAAGATGAATTGATCAAGCTTTGGATGGCAGAAGGTTTGTTGAAGTGTTGCGGATCAGACAAAAGTGAAGAAGAGTTTGGTAATGAAATTTTTTGTGATCTTGAGTCTATTTCATTTTTCCAAGAATCATATAAGCAGTCATATGTCATGCATGATCTTGTCAATGATTTAGCAAAATCAGTGTCAGGCGAGTTTTGTAAGCAAATAGAGGGTTCTATGGTGGAAGGTACCCTTGAAAGGACACGTCATATTTGGTTCTCTCTTCAATCAAACAATGTTGATAAATTACTTGAGCCAGTATGTGAGCTGAAGGGACTACGAAGTCTGATACTAAAAGACTATGAGAGTGTGTCGATAAGCAACAGTGTGCAACATGATCTGTTTTCAAGACTAAAATGTTTGAGGATGTTATCATTTAGAGGGTGTGGTCTCTCAGAGCTAGTGGATGAGATAAGCAATTTAAAACTTTTGCGTTATCTAGACCTTTCATACACTGAGATTACAAGCTTACCTGATACCATTTGCATGTTGTATAATTTGCAAACACTCTTGTTGAAAGGCTGTCGTGAATTGATAGAGCTCCCTTCAAATTTTTCCGAACTCATCAATTTATGTCATCTTGAACTCATCAATTATAGAGGCACTAGAATAAAGAAGATGCCAAAGCATATGGGAAAGCTAAACAATCTTCAAACCCTGTCATATTTTATTGTCGAAGAGCAGAATGGATCTGATCTTAAAGAGTTGGCAAAACTAAACCATCTTCATGGAACAATTCATATTGAAGGGTTGGGTAATGTGATTGATCCTGCAGATGCTGTGACGGCCAATTTAAAAGATAAGAAGCATTTAGAAGAATTACATATGAAGTTTGATGGCGGAAGAAAAGAAATGGATGGCTCAACAATTGAATGCAATGTATCTGTCTTGGAGGCTCTACAACCAAATAGCAACTTGAAGAGGCTTACCATCTCACAATACAAAGGTAATAGCTTTCCAAATTGGCTAAGGGGTTGTCAGTTACCCAACTTAGTATCTCTTAAACTAAAGGGTTGTGGATTATGTTCTTTGTTGCCACCACTTGGGACGCTCCCCTTTCTCCAGAAGCTTTCTATTTCAGACTGTGATGGAATAAAGATCATTGGTGAAGAGATTTATGGTAACAATTTAACAAATGTTCCTTTCTTGTCCCTTAATGTTTTGGAATTTGAGAAGATGAACAATTGGGAGGAGTGGTTGTGTCTTGAAGGGTTTCCTTTGCTTAAAGAGCTTTATATAATAAACTGTCCCAATTTGAAAAGGGCTCTGCCACAACACCTTCCTTCTTTACAAAAACTGAAGATTAGTGATTGCAACCAGATGGAGGCATCAATTCCCAAGTGTGATAATATGATAGAGTTAGATATACAGAGATGTGACAGAATTTTGGTAAATGAATTGCCGATCAGCTTGAAAAGGCTAACCCTTTGGGACAATAGGTACACTGAGTTCTCCATGGAGCAAAATTTAATCAATTTTCCCTTTCTTGAAGAGTTGAAGTTGGATTGGAGTGGCTCTGTAAAATGTCCTTCTTTGGATTTACGTTGCTATAATTCTCTTCAAAGCCTTTCAATAAAAGGATGGGGCTCCTCCTCCTTGCCTTTATCACTACACTTGTTCACCAAACTTCGTTATCTGCGTCTGTGTGATTGTCCAAAGCTGGAATCGTTTCCAATGGGAGGTTTGCCTTCCAACTTGAGGGACCTTTCAATATCCGATTGCCCAAAACTGATTGGTTCAAGAGAGGAGTGGGGTGGTTTGCCTTCCAACTTGAGGGACCTGTCAATATGGAATTGCCCAAAACTGATTGGTTCGAGAGAGGAGTGGGGTTTGTTCCAACTCAATTCTCTGGAATTATTCAGTGTTAGTGATGAGTTTGAAAACGTGGAGTCGTTCCCAGAGGAGAATCTGCTGCCACCAGCTCTGAACAGTCTTTCTTTGTCTAATTGTTCAAAGCTAAGAGTAATGAACAACAAGGGTTTTCTCCACCTCAAATCTCTCAAATATCTATATATTTGGGACTGCCCTAGTCTTGAGAGCTTGCCAGAGAAGGAGGCTCTACCCAACTCTCTTTGGAGTTTGGACATTTCCAATTGTCCAATAATAAAGGAGAAGTATGAAAAGGAGGGAGGAGAGCGTTGGCATACAATTAGTCACATCTCTCTTGTGTGGATTGACGGAACACCGCACAGTCCAATTGTGGGTCCCACATTTGTATGAAGGTGCGAACATATTCTTATACAAACAATCGCATCAAATATCTTTGTTATTATTCTTAATTTTATTTCCCTTTTTTTTTTGACAAATTTCCCTTTTTTTATATTCTTATTTTCTGATTTCAATTTTTTTTCCCAGGCTAAATTGGAGTGTGGTGATTCAATTTCTAGTCAGATATATATATATATATATATATATATATATATATATATATATATATATATAGCTTTTACATCAATGGAGTTCCCAGCACATATTCTTCCTCTTCAGGTAAATTACTGCCTATGTGGAGAATCTACAACTCATTTGCTAACTAGTTTATTTTTAATTTTTTTATTGTTGTGATTGAAACAGTTTTTCTCATTTTTCCAAACCATTAGTCCTTATGGCAAGCTCATTAACCACTTGATTGACAATTTTCTCATTTAGATATGATATATTCATATTTATAGATTCTCTAATTTCATATTTTGCATGCCATAGAATTTATAGATTCTCCAATTTCATATTTTGCATGACATAGACATTTATAGATTCTCTAATTTCAGTTTTGAAGCCAGAAAATACTAACAATTATTTATTTTTCAAGCAACCAAAGAATACTAACTGCCATTTTATTTTATTTTTTACAAAAAACAGAACACTATGTTTAATAAGTTTAAACTTTAATACAAAAATGGTCTTCACAGCATGCTGCTATAACCACATTTTCTCATTCCATGGCTTCAACAAGATTTGCTCCAGGTTACAGTTTAAAGAAACTCTTGCCTAATCAGAGGTATTTGGATATAATGACATGTTTTTTATTTCTTTCGCCAAAGCTGGTAATTTTCTAATAAAAGTTGAATGATGAAACTTTGTTCCTTTGCTCCTAAGGTGGTTTGCATTCTATGTATTTGCTCAATTCCTTTTCACTTACTGCATGTGAATTATATCCATGTGGTTACGATTTGTATTCAAGCATTATAATGAAACATTTTTCACCAAACTGTTTTACAAAGTTGTCTGCAACAAATTTTCATGGAGTATATTAAACGGCTTGCTTTCAAGCATTATAATGAATCATGTATTTGAGATTAGAAAATATAATGCTTGACTCATTACTAGTAACTGGTGTCTATTATATTATGTATTTATTTTTTAAAATAGAAAACTTTTGTGTTCACTTATTCATAAGTAA

Protein sequence

>MS.gene77974.t1

MAELVAGAFLQSSFQVIFEKLASVDIRNYFSSNNVDELVKELHTALDSINLVLDEAEIKQYQIPLVKKWLDELKHVIYEADQLLDEISTDEMINKLKAESEPLTTNLLGLVSALTTNPFESRLNEQLDKLELLAKQKKELGLGEDGEDLNLLQHQLQHMLMGKKYLLVLDDIWNGDAECWELLLLPFNHGSSGSKIIVTTREKECCGSDKSEEEFGNEIFCDLESISFFQESYKQSYVMHDLVNDLAKSVSGEFCKQIEGSMVEGTLERTRHIWFSLQSNNVDKLLEPVCELKGLRSLILKDYESVSISNSVQHDLFSRLKCLRMLSFRGCGLSELVDEISNLKLLRYLDLSYTEITSLPDTICMLYNLQTLLLKGCRELIELPSNFSELINLCHLELINYRGTRIKKMPKHMGKLNNLQTLSYFIVEEQNGSDLKELAKLNHLHGTIHIEGLGNVIDPADAVTANLKDKKHLEELHMKFDGGRKEMDGSTIECNVSVLEALQPNSNLKRLTISQYKGNSFPNWLRGCQLPNLVSLKLKGCGLCSLLPPLGTLPFLQKLSISDCDGIKIIGEEIYGNNLTNVPFLSLNVLEFEKMNNWEEWLCLEGFPLLKELYIINCPNLKRALPQHLPSLQKLKISDCNQMEASIPKCDNMIELDIQRCDRILVNELPISLKRLTLWDNRYTEFSMEQNLINFPFLEELKLDWSGSVKCPSLDLRCYNSLQSLSIKGWGSSSLPLSLHLFTKLRYLRLCDCPKLESFPMGGLPSNLRDLSISDCPKLIGSREEWGGLPSNLRDLSIWNCPKLIGSREEWGLFQLNSLELFSVSDEFENVESFPEENLLPPALNSLSLSNCSKLRVMNNKGFLHLKSLKYLYIWDCPSLESLPEKEALPNSLWSLDISNCPIIKEKYEKEGGERWHTISHISLVWIDGTPHSPIAKLECGDSISSQIYIYIYIYIYIYIYIYIAFTSMEFPAHILPLQHAAITTFSHSMASTRFAPGYSLKKLLPNQRKLLCSLIHK