Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78125.t1 | XP_003606257.1 | 97.8 | 417 | 9 | 0 | 1 | 417 | 1 | 417 | 3.80E-231 | 810.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78125.t1 | Q9ZUY3 | 82.9 | 381 | 56 | 3 | 42 | 413 | 33 | 413 | 1.6e-174 | 613.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78125.t1 | G7JKZ4 | 97.8 | 417 | 9 | 0 | 1 | 417 | 1 | 417 | 2.7e-231 | 810.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene053319 | MS.gene78125 | 0.803205 | 3.90E-49 | -1.69E-46 |
| MS.gene053406 | MS.gene78125 | 0.803723 | 3.04E-49 | -1.69E-46 |
| MS.gene054742 | MS.gene78125 | 0.802925 | 4.45E-49 | -1.69E-46 |
| MS.gene056218 | MS.gene78125 | 0.809772 | 1.60E-50 | -1.69E-46 |
| MS.gene056748 | MS.gene78125 | 0.801731 | 7.84E-49 | -1.69E-46 |
| MS.gene059891 | MS.gene78125 | 0.801508 | 8.71E-49 | -1.69E-46 |
| MS.gene059892 | MS.gene78125 | 0.805302 | 1.43E-49 | -1.69E-46 |
| MS.gene060087 | MS.gene78125 | 0.807207 | 5.66E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78125.t1 | MTR_4g055310 | 97.842 | 417 | 9 | 0 | 1 | 417 | 1 | 417 | 0.0 | 850 |
| MS.gene78125.t1 | MTR_2g084875 | 81.690 | 426 | 61 | 6 | 1 | 411 | 1 | 424 | 0.0 | 685 |
| MS.gene78125.t1 | MTR_4g132250 | 59.780 | 363 | 142 | 2 | 44 | 406 | 32 | 390 | 2.38e-150 | 432 |
| MS.gene78125.t1 | MTR_2g088130 | 64.052 | 306 | 108 | 1 | 103 | 408 | 71 | 374 | 7.48e-146 | 419 |
| MS.gene78125.t1 | MTR_4g061070 | 65.359 | 306 | 101 | 2 | 103 | 408 | 73 | 373 | 1.59e-140 | 406 |
| MS.gene78125.t1 | MTR_2g088130 | 66.304 | 276 | 91 | 1 | 133 | 408 | 51 | 324 | 7.56e-133 | 385 |
| MS.gene78125.t1 | MTR_2g088130 | 63.359 | 262 | 94 | 1 | 103 | 364 | 71 | 330 | 7.98e-121 | 354 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78125.t1 | AT1G08250 | 82.058 | 379 | 49 | 5 | 46 | 407 | 26 | 402 | 0.0 | 604 |
| MS.gene78125.t1 | AT2G27820 | 84.022 | 363 | 49 | 3 | 55 | 408 | 46 | 408 | 0.0 | 596 |
| MS.gene78125.t1 | AT3G44720 | 74.242 | 396 | 91 | 6 | 29 | 415 | 28 | 421 | 0.0 | 569 |
| MS.gene78125.t1 | AT5G22630 | 76.726 | 391 | 75 | 5 | 31 | 411 | 34 | 418 | 0.0 | 566 |
| MS.gene78125.t1 | AT1G11790 | 63.107 | 309 | 112 | 1 | 100 | 408 | 85 | 391 | 1.53e-145 | 419 |
| MS.gene78125.t1 | AT3G07630 | 64.024 | 328 | 111 | 2 | 81 | 408 | 59 | 379 | 1.44e-140 | 406 |
| MS.gene78125.t1 | AT3G07630 | 64.024 | 328 | 111 | 2 | 81 | 408 | 59 | 379 | 1.44e-140 | 406 |
| MS.gene78125.t1 | AT3G07630 | 64.024 | 328 | 111 | 2 | 81 | 408 | 59 | 379 | 1.44e-140 | 406 |
| MS.gene78125.t1 | AT1G11790 | 61.382 | 246 | 93 | 1 | 100 | 345 | 85 | 328 | 6.32e-108 | 322 |
Find 124 sgRNAs with CRISPR-Local
Find 135 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACAAACCGTGTCACGTTATT+TGG | 0.106188 | 4.4:+47746605 | None:intergenic |
| ACGATCTGTTCTTGGAATTA+TGG | 0.158461 | 4.4:+47746565 | None:intergenic |
| TACATCTTTCTTAAGAGTTT+TGG | 0.174536 | 4.4:-47746288 | MS.gene78125:CDS |
| CACTGCCTCCTCGCGCTTCC+AGG | 0.236669 | 4.4:-47746860 | MS.gene78125:CDS |
| CGATCTGTTCTTGGAATTAT+GGG | 0.296587 | 4.4:+47746566 | None:intergenic |
| TCCGCATTTAACGCTTATTC+TGG | 0.298276 | 4.4:+47747378 | None:intergenic |
| AGGCTTCCATGGCTGAGGTT+AGG | 0.315985 | 4.4:-47746343 | MS.gene78125:CDS |
| GCACGCGCTGCAGAGCTTTA+CGG | 0.323478 | 4.4:-47746662 | MS.gene78125:CDS |
| CCTTCTTCTACTTTCTCATA+GGG | 0.354481 | 4.4:-47746233 | None:intergenic |
| GGCTTCCATGGCTGAGGTTA+GGG | 0.363263 | 4.4:-47746342 | MS.gene78125:CDS |
| AGCTTTACCGGCAGCGGCTT+CGG | 0.370119 | 4.4:+47747069 | None:intergenic |
| TTGAAAGGACGATCTGTTCT+TGG | 0.370474 | 4.4:+47746557 | None:intergenic |
| GGTGGTGACATGGTCGTTTC+CGG | 0.373076 | 4.4:+47747252 | None:intergenic |
| TCCTTCTTCTACTTTCTCAT+AGG | 0.375639 | 4.4:-47746234 | None:intergenic |
| GTCGCATACCAAGGAGTTCC+TGG | 0.378910 | 4.4:-47747100 | MS.gene78125:CDS |
| GATCGGTTACGGCGGCGTTA+TGG | 0.389638 | 4.4:+47747221 | None:intergenic |
| CGTGACACGGTTTGTTATGT+TGG | 0.402654 | 4.4:-47746597 | MS.gene78125:CDS |
| CACGGCATGGCTTCGCTGTT+CGG | 0.402841 | 4.4:+47747043 | None:intergenic |
| ATTCCCTTACCTATCTGAAC+CGG | 0.403460 | 4.4:-47747438 | MS.gene78125:CDS |
| GTGATTTATTGTTTCCGATT+GGG | 0.409384 | 4.4:+47747188 | None:intergenic |
| TGTGGAGGCGGTGGCGGAGG+AGG | 0.411541 | 4.4:+47746912 | None:intergenic |
| GCGAGGAGGCAGTGGTGGAC+GGG | 0.414286 | 4.4:+47746869 | None:intergenic |
| CATTTAACGCTTATTCTGGT+TGG | 0.416317 | 4.4:+47747382 | None:intergenic |
| GCTGTTCGGATAAGCTTTAC+CGG | 0.419640 | 4.4:+47747057 | None:intergenic |
| CGATGTGGAGGCGGTGGCGG+AGG | 0.420946 | 4.4:+47746909 | None:intergenic |
| CCAATCGGCTCGGTTTGAAC+CGG | 0.421888 | 4.4:+47747336 | None:intergenic |
| GGAGGAGGAGGTCGTAGTTT+CGG | 0.424069 | 4.4:+47746927 | None:intergenic |
| AAGCTCTGCAGCGCGTGCAC+TGG | 0.428583 | 4.4:+47746667 | None:intergenic |
| GGAGGCGGTGGCGGAGGAGG+AGG | 0.431745 | 4.4:+47746915 | None:intergenic |
| CGCTGATCGCGCAGTTCTAC+CGG | 0.442031 | 4.4:-47746978 | MS.gene78125:CDS |
| GTTCAGATAGGTAAGGGAAT+TGG | 0.447287 | 4.4:+47747441 | None:intergenic |
| GGGTTCGCCCCTCGTTAAAC+CGG | 0.447861 | 4.4:-47747417 | MS.gene78125:CDS |
| AGCGCATGAGCTTTGCCAAT+CGG | 0.449914 | 4.4:+47747321 | None:intergenic |
| CGTGCATCGGTGCCGGAGAT+AGG | 0.451609 | 4.4:+47747137 | None:intergenic |
| CGACGATGTGGAGGCGGTGG+CGG | 0.453260 | 4.4:+47746906 | None:intergenic |
| GGCGGCGTTATGGCCGTTGA+CGG | 0.463263 | 4.4:+47747231 | None:intergenic |
| GCGGCTTCGGAGTATGCTCC+AGG | 0.473160 | 4.4:+47747082 | None:intergenic |
| CGCGAGGAGGCAGTGGTGGA+CGG | 0.473902 | 4.4:+47746868 | None:intergenic |
| AGTGATTTATTGTTTCCGAT+TGG | 0.474485 | 4.4:+47747187 | None:intergenic |
| ATGAGCTTTGCCAATCGGCT+CGG | 0.474923 | 4.4:+47747326 | None:intergenic |
| GCTTAACTAAGATTGAATCT+AGG | 0.481937 | 4.4:-47746454 | MS.gene78125:CDS |
| GATCTTCAGCTCGTCCCAAT+CGG | 0.482742 | 4.4:-47747202 | MS.gene78125:CDS |
| TCATCATCCACAACTCGAAT+CGG | 0.483438 | 4.4:+47746416 | None:intergenic |
| CTGGAAGCGCGAGGAGGCAG+TGG | 0.487019 | 4.4:+47746861 | None:intergenic |
| TCGGTGATAGTAAGTGGCTT+TGG | 0.489232 | 4.4:+47747160 | None:intergenic |
| TGGTTGGAGCTGAACCGATC+CGG | 0.493435 | 4.4:+47747398 | None:intergenic |
| CGGATAAGCTTTACCGGCAG+CGG | 0.495619 | 4.4:+47747063 | None:intergenic |
| GTTGAGCCGTGCATCGGTGC+CGG | 0.498679 | 4.4:+47747130 | None:intergenic |
| GGGGCGAACCCGGTTCAGAT+AGG | 0.502714 | 4.4:+47747429 | None:intergenic |
| TGCAGCGCGTGCACTGGCGA+TGG | 0.502961 | 4.4:+47746673 | None:intergenic |
| CGAGGAGGCAGTGGTGGACG+GGG | 0.508663 | 4.4:+47746870 | None:intergenic |
| GGATTAAATATCTTAGCTGA+TGG | 0.510750 | 4.4:-47746641 | MS.gene78125:CDS |
| ACATGGTCGTTTCCGGTGAC+CGG | 0.513789 | 4.4:+47747259 | None:intergenic |
| TACTATCACCGACCTATCTC+CGG | 0.522266 | 4.4:-47747149 | MS.gene78125:CDS |
| CGCCCCTCGTTAAACCGGAT+CGG | 0.523600 | 4.4:-47747412 | MS.gene78125:CDS |
| ATCGGCTCGGTTTGAACCGG+TGG | 0.524999 | 4.4:+47747339 | None:intergenic |
| TGGCCGTCCGATTCGAGTTG+TGG | 0.527016 | 4.4:-47746423 | MS.gene78125:CDS |
| CCCTATGAGAAAGTAGAAGA+AGG | 0.528524 | 4.4:+47746233 | None:intergenic |
| ATAAGCGTTAAATGCGGATA+CGG | 0.530595 | 4.4:-47747373 | MS.gene78125:CDS |
| CTCCGACGATGTGGAGGCGG+TGG | 0.532325 | 4.4:+47746903 | None:intergenic |
| CTTCTCCGACGATGTGGAGG+CGG | 0.532954 | 4.4:+47746900 | None:intergenic |
| GACCATGTCACCACCGTCAA+CGG | 0.533606 | 4.4:-47747244 | MS.gene78125:CDS |
| GATTGGGACGAGCTGAAGAT+CGG | 0.534875 | 4.4:+47747204 | None:intergenic |
| CGGCCTCAACGTAGCGCGTG+AGG | 0.535998 | 4.4:-47746759 | MS.gene78125:CDS |
| GCATACTCCGAAGCCGCTGC+CGG | 0.539190 | 4.4:-47747076 | MS.gene78125:CDS |
| TCGCATTGAGCTAATGCTTG+TGG | 0.545583 | 4.4:+47746800 | None:intergenic |
| GACGAGCTGAAGATCGGTTA+CGG | 0.546171 | 4.4:+47747210 | None:intergenic |
| GAAGCGCGAGGAGGCAGTGG+TGG | 0.551549 | 4.4:+47746864 | None:intergenic |
| CCGGTTCAAACCGAGCCGAT+TGG | 0.554522 | 4.4:-47747336 | MS.gene78125:CDS |
| CGAGATGAATCTCCGGTCAC+CGG | 0.555384 | 4.4:-47747271 | MS.gene78125:CDS |
| AAAGTAGAAGAAGGACTCCA+AGG | 0.559184 | 4.4:+47746242 | None:intergenic |
| CGGAGGGTTGAGCCGTGCAT+CGG | 0.562525 | 4.4:+47747124 | None:intergenic |
| TTCCCTTACCTATCTGAACC+GGG | 0.566128 | 4.4:-47747437 | MS.gene78125:CDS |
| TTCACAGCGAGATGAATCTC+CGG | 0.567455 | 4.4:-47747278 | MS.gene78125:CDS |
| TGGCGATGGCAGCAGTGTCG+CGG | 0.569274 | 4.4:+47746687 | None:intergenic |
| GATAGGTCGGTGATAGTAAG+TGG | 0.571076 | 4.4:+47747154 | None:intergenic |
| CGCCACCGCCTCCACATCGT+CGG | 0.573031 | 4.4:-47746905 | MS.gene78125:CDS |
| TTCGGACTCCTGGAAGCGCG+AGG | 0.576639 | 4.4:+47746852 | None:intergenic |
| CTTCTTCTACTTTCTCATAG+GGG | 0.577391 | 4.4:-47746232 | None:intergenic |
| GGTTTAACGAGGGGCGAACC+CGG | 0.579775 | 4.4:+47747419 | None:intergenic |
| GGCACAAAATGCACTTGCTG+AGG | 0.582924 | 4.4:-47746321 | MS.gene78125:CDS |
| GGCCGTTGACGGTGGTGACA+TGG | 0.583052 | 4.4:+47747242 | None:intergenic |
| TTGTGCCCTAACCTCAGCCA+TGG | 0.583878 | 4.4:+47746337 | None:intergenic |
| AGTATGCTCCAGGAACTCCT+TGG | 0.589472 | 4.4:+47747092 | None:intergenic |
| CTACCGGTTGAAAACTCCCT+CGG | 0.590263 | 4.4:-47746962 | MS.gene78125:CDS |
| GAACCCGGTTCAGATAGGTA+AGG | 0.591113 | 4.4:+47747434 | None:intergenic |
| CTATCTCCGGCACCGATGCA+CGG | 0.591172 | 4.4:-47747136 | MS.gene78125:CDS |
| GGCGTTATGGCCGTTGACGG+TGG | 0.595595 | 4.4:+47747234 | None:intergenic |
| CATGCCGTGTGATCAATTCG+AGG | 0.597736 | 4.4:-47747029 | MS.gene78125:CDS |
| CGCACCAGCTGTATCGTCAA+CGG | 0.602338 | 4.4:+47746736 | None:intergenic |
| AACCCGGTTCAGATAGGTAA+GGG | 0.606680 | 4.4:+47747435 | None:intergenic |
| GAACTTCTCCGACGATGTGG+AGG | 0.607022 | 4.4:+47746897 | None:intergenic |
| CGGCCTCACGCGCTACGTTG+AGG | 0.609595 | 4.4:+47746756 | None:intergenic |
| GTTGTGGATGATGAAAATGA+TGG | 0.612547 | 4.4:-47746407 | MS.gene78125:CDS |
| CTCGAATTGATCACACGGCA+TGG | 0.616382 | 4.4:+47747030 | None:intergenic |
| CTCCAAGGTGTCATATCCAT+AGG | 0.621384 | 4.4:+47746257 | None:intergenic |
| GTTGAACTTCTCCGACGATG+TGG | 0.621502 | 4.4:+47746894 | None:intergenic |
| GAGGCCGTTGACGATACAGC+TGG | 0.621866 | 4.4:-47746740 | MS.gene78125:CDS |
| CATCGGTGCCGGAGATAGGT+CGG | 0.624382 | 4.4:+47747141 | None:intergenic |
| GAACCGATCCGGTTTAACGA+GGG | 0.630908 | 4.4:+47747409 | None:intergenic |
| GGAGGAGGTCGTAGTTTCGG+TGG | 0.633128 | 4.4:+47746930 | None:intergenic |
| GAACTCCTTGGTATGCGACA+CGG | 0.633893 | 4.4:+47747104 | None:intergenic |
| ATCCTATGGATATGACACCT+TGG | 0.634008 | 4.4:-47746259 | MS.gene78125:CDS |
| ACCCTCCGTGTCGCATACCA+AGG | 0.638791 | 4.4:-47747109 | MS.gene78125:CDS |
| GAAAACACGCTAACAAAGCT+CGG | 0.640593 | 4.4:-47746779 | MS.gene78125:CDS |
| CGTTGACGATACAGCTGGTG+CGG | 0.643092 | 4.4:-47746735 | MS.gene78125:CDS |
| AACCGATCCGGTTTAACGAG+GGG | 0.645716 | 4.4:+47747410 | None:intergenic |
| GGACTCCTGGAAGCGCGAGG+AGG | 0.648483 | 4.4:+47746855 | None:intergenic |
| CGATGGCAGCAGTGTCGCGG+AGG | 0.652317 | 4.4:+47746690 | None:intergenic |
| TGACGATACAGCTGGTGCGG+CGG | 0.652571 | 4.4:-47746732 | MS.gene78125:CDS |
| TGAACCGATCCGGTTTAACG+AGG | 0.652677 | 4.4:+47747408 | None:intergenic |
| CGAATCGGACGGCCACGATG+AGG | 0.656619 | 4.4:+47746431 | None:intergenic |
| TAGGTAAGGGAATTGGAAGA+CGG | 0.657172 | 4.4:+47747448 | None:intergenic |
| CCGGTTGAAAACTCCCTCGG+TGG | 0.665590 | 4.4:-47746959 | MS.gene78125:CDS |
| CATCCACAACTCGAATCGGA+CGG | 0.675677 | 4.4:+47746420 | None:intergenic |
| ATGATCCAAATAACGTGACA+CGG | 0.678576 | 4.4:-47746610 | MS.gene78125:CDS |
| ACCAGAATAAGCGTTAAATG+CGG | 0.694484 | 4.4:-47747379 | MS.gene78125:CDS |
| TCGGTGGATAGATCCACCGA+GGG | 0.697956 | 4.4:+47746946 | None:intergenic |
| CTCCTTGGTATGCGACACGG+AGG | 0.698152 | 4.4:+47747107 | None:intergenic |
| TCCTTGGTATGCGACACGGA+GGG | 0.699394 | 4.4:+47747108 | None:intergenic |
| GCTACCTCGAATTGATCACA+CGG | 0.710462 | 4.4:+47747025 | None:intergenic |
| GAGCTGAAGATCGGTTACGG+CGG | 0.717318 | 4.4:+47747213 | None:intergenic |
| TTCGGTGGATAGATCCACCG+AGG | 0.722269 | 4.4:+47746945 | None:intergenic |
| ATTGAATCTAGGCCTCATCG+TGG | 0.760383 | 4.4:-47746443 | MS.gene78125:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATGTTTTATATTGATTTTG+AGG | - | chr4.4:47747338-47747357 | MS.gene78125:CDS | 15.0% |
| !! | ACATCTTTCTTAAGAGTTTT+GGG | - | chr4.4:47747414-47747433 | MS.gene78125:CDS | 25.0% |
| !! | CACGTGTTAAATATTCTTTT+CGG | + | chr4.4:47746870-47746889 | None:intergenic | 25.0% |
| !! | TACATCTTTCTTAAGAGTTT+TGG | - | chr4.4:47747413-47747432 | MS.gene78125:CDS | 25.0% |
| !!! | AAAACAATGCTTGTTTTGAA+AGG | + | chr4.4:47747162-47747181 | None:intergenic | 25.0% |
| !!! | ATTGTTTTTGCTCATGATAA+AGG | - | chr4.4:47747174-47747193 | MS.gene78125:CDS | 25.0% |
| AGTGATTTATTGTTTCCGAT+TGG | + | chr4.4:47746517-47746536 | None:intergenic | 30.0% | |
| GCTTAACTAAGATTGAATCT+AGG | - | chr4.4:47747247-47747266 | MS.gene78125:CDS | 30.0% | |
| GGATTAAATATCTTAGCTGA+TGG | - | chr4.4:47747060-47747079 | MS.gene78125:CDS | 30.0% | |
| GTGATTTATTGTTTCCGATT+GGG | + | chr4.4:47746516-47746535 | None:intergenic | 30.0% | |
| ! | CATCTTTCTTAAGAGTTTTG+GGG | - | chr4.4:47747415-47747434 | MS.gene78125:CDS | 30.0% |
| ACCAGAATAAGCGTTAAATG+CGG | - | chr4.4:47746322-47746341 | MS.gene78125:CDS | 35.0% | |
| ACGATCTGTTCTTGGAATTA+TGG | + | chr4.4:47747139-47747158 | None:intergenic | 35.0% | |
| ATAAGCGTTAAATGCGGATA+CGG | - | chr4.4:47746328-47746347 | MS.gene78125:CDS | 35.0% | |
| ATGATCCAAATAACGTGACA+CGG | - | chr4.4:47747091-47747110 | MS.gene78125:CDS | 35.0% | |
| CATTTAACGCTTATTCTGGT+TGG | + | chr4.4:47746322-47746341 | None:intergenic | 35.0% | |
| CGATCTGTTCTTGGAATTAT+GGG | + | chr4.4:47747138-47747157 | None:intergenic | 35.0% | |
| GTTGTGGATGATGAAAATGA+TGG | - | chr4.4:47747294-47747313 | MS.gene78125:CDS | 35.0% | |
| ! | AAATATTCTTTTCGGACTCC+TGG | + | chr4.4:47746862-47746881 | None:intergenic | 35.0% |
| ! | ATTCGAGGTAGCTTTTCAAT+CGG | - | chr4.4:47746687-47746706 | MS.gene78125:CDS | 35.0% |
| ! | CTTTTCAATCGGTAGAACTT+TGG | - | chr4.4:47746698-47746717 | MS.gene78125:CDS | 35.0% |
| !! | TGCTTTCAGCTTTTGCTTTT+AGG | - | chr4.4:47747217-47747236 | MS.gene78125:CDS | 35.0% |
| !!! | TATTGATTTTGAGGCTTCCA+TGG | - | chr4.4:47747347-47747366 | MS.gene78125:CDS | 35.0% |
| AAAGTAGAAGAAGGACTCCA+AGG | + | chr4.4:47747462-47747481 | None:intergenic | 40.0% | |
| ACAAACCGTGTCACGTTATT+TGG | + | chr4.4:47747099-47747118 | None:intergenic | 40.0% | |
| ATCCTATGGATATGACACCT+TGG | - | chr4.4:47747442-47747461 | MS.gene78125:CDS | 40.0% | |
| ATTCCCTTACCTATCTGAAC+CGG | - | chr4.4:47746263-47746282 | MS.gene78125:CDS | 40.0% | |
| GAAAACACGCTAACAAAGCT+CGG | - | chr4.4:47746922-47746941 | MS.gene78125:CDS | 40.0% | |
| GTTCAGATAGGTAAGGGAAT+TGG | + | chr4.4:47746263-47746282 | None:intergenic | 40.0% | |
| TAGGTAAGGGAATTGGAAGA+CGG | + | chr4.4:47746256-47746275 | None:intergenic | 40.0% | |
| TCATCATCCACAACTCGAAT+CGG | + | chr4.4:47747288-47747307 | None:intergenic | 40.0% | |
| TCCGCATTTAACGCTTATTC+TGG | + | chr4.4:47746326-47746345 | None:intergenic | 40.0% | |
| TTGAAAGGACGATCTGTTCT+TGG | + | chr4.4:47747147-47747166 | None:intergenic | 40.0% | |
| !!! | AGTTTTGGGGAGTTATCCTA+TGG | - | chr4.4:47747428-47747447 | MS.gene78125:CDS | 40.0% |
| !!! | TACGGTTTTGAATTCTCCAC+CGG | - | chr4.4:47746346-47746365 | MS.gene78125:CDS | 40.0% |
| AACCCGGTTCAGATAGGTAA+GGG | + | chr4.4:47746269-47746288 | None:intergenic | 45.0% | |
| ATTGAATCTAGGCCTCATCG+TGG | - | chr4.4:47747258-47747277 | MS.gene78125:CDS | 45.0% | |
| GATAGGTCGGTGATAGTAAG+TGG | + | chr4.4:47746550-47746569 | None:intergenic | 45.0% | |
| GCTACCTCGAATTGATCACA+CGG | + | chr4.4:47746679-47746698 | None:intergenic | 45.0% | |
| GCTGTTCGGATAAGCTTTAC+CGG | + | chr4.4:47746647-47746666 | None:intergenic | 45.0% | |
| TACTATCACCGACCTATCTC+CGG | - | chr4.4:47746552-47746571 | MS.gene78125:CDS | 45.0% | |
| TCGCATTGAGCTAATGCTTG+TGG | + | chr4.4:47746904-47746923 | None:intergenic | 45.0% | |
| TCGGTGATAGTAAGTGGCTT+TGG | + | chr4.4:47746544-47746563 | None:intergenic | 45.0% | |
| TTCACAGCGAGATGAATCTC+CGG | - | chr4.4:47746423-47746442 | MS.gene78125:CDS | 45.0% | |
| TTCCCTTACCTATCTGAACC+GGG | - | chr4.4:47746264-47746283 | MS.gene78125:CDS | 45.0% | |
| ! | CTCCAAGGTGTCATATCCAT+AGG | + | chr4.4:47747447-47747466 | None:intergenic | 45.0% |
| !! | CGTGACACGGTTTGTTATGT+TGG | - | chr4.4:47747104-47747123 | MS.gene78125:CDS | 45.0% |
| AACCGATCCGGTTTAACGAG+GGG | + | chr4.4:47746294-47746313 | None:intergenic | 50.0% | |
| AGCGCATGAGCTTTGCCAAT+CGG | + | chr4.4:47746383-47746402 | None:intergenic | 50.0% | |
| AGTATGCTCCAGGAACTCCT+TGG | + | chr4.4:47746612-47746631 | None:intergenic | 50.0% | |
| ATGAGCTTTGCCAATCGGCT+CGG | + | chr4.4:47746378-47746397 | None:intergenic | 50.0% | |
| CATCCACAACTCGAATCGGA+CGG | + | chr4.4:47747284-47747303 | None:intergenic | 50.0% | |
| CATGCCGTGTGATCAATTCG+AGG | - | chr4.4:47746672-47746691 | MS.gene78125:CDS | 50.0% | |
| CTCGAATTGATCACACGGCA+TGG | + | chr4.4:47746674-47746693 | None:intergenic | 50.0% | |
| GAACCCGGTTCAGATAGGTA+AGG | + | chr4.4:47746270-47746289 | None:intergenic | 50.0% | |
| GAACCGATCCGGTTTAACGA+GGG | + | chr4.4:47746295-47746314 | None:intergenic | 50.0% | |
| GAACTCCTTGGTATGCGACA+CGG | + | chr4.4:47746600-47746619 | None:intergenic | 50.0% | |
| GACGAGCTGAAGATCGGTTA+CGG | + | chr4.4:47746494-47746513 | None:intergenic | 50.0% | |
| GATCTTCAGCTCGTCCCAAT+CGG | - | chr4.4:47746499-47746518 | MS.gene78125:CDS | 50.0% | |
| GATTGGGACGAGCTGAAGAT+CGG | + | chr4.4:47746500-47746519 | None:intergenic | 50.0% | |
| GTTGAACTTCTCCGACGATG+TGG | + | chr4.4:47746810-47746829 | None:intergenic | 50.0% | |
| TGAACCGATCCGGTTTAACG+AGG | + | chr4.4:47746296-47746315 | None:intergenic | 50.0% | |
| ! | CTACCGGTTGAAAACTCCCT+CGG | - | chr4.4:47746739-47746758 | MS.gene78125:CDS | 50.0% |
| ! | GGCACAAAATGCACTTGCTG+AGG | - | chr4.4:47747380-47747399 | MS.gene78125:CDS | 50.0% |
| !!! | TTTTGAGGCTTCCATGGCTG+AGG | - | chr4.4:47747353-47747372 | MS.gene78125:CDS | 50.0% |
| ACATGGTCGTTTCCGGTGAC+CGG | + | chr4.4:47746445-47746464 | None:intergenic | 55.0% | |
| AGGCTTCCATGGCTGAGGTT+AGG | - | chr4.4:47747358-47747377 | MS.gene78125:CDS | 55.0% | |
| CGAGATGAATCTCCGGTCAC+CGG | - | chr4.4:47746430-47746449 | MS.gene78125:CDS | 55.0% | |
| CGCACCAGCTGTATCGTCAA+CGG | + | chr4.4:47746968-47746987 | None:intergenic | 55.0% | |
| CGGATAAGCTTTACCGGCAG+CGG | + | chr4.4:47746641-47746660 | None:intergenic | 55.0% | |
| CGTTGACGATACAGCTGGTG+CGG | - | chr4.4:47746966-47746985 | MS.gene78125:CDS | 55.0% | |
| GAACTTCTCCGACGATGTGG+AGG | + | chr4.4:47746807-47746826 | None:intergenic | 55.0% | |
| GACCATGTCACCACCGTCAA+CGG | - | chr4.4:47746457-47746476 | MS.gene78125:CDS | 55.0% | |
| GAGCTGAAGATCGGTTACGG+CGG | + | chr4.4:47746491-47746510 | None:intergenic | 55.0% | |
| GGAGGAGGAGGTCGTAGTTT+CGG | + | chr4.4:47746777-47746796 | None:intergenic | 55.0% | |
| GGCTTCCATGGCTGAGGTTA+GGG | - | chr4.4:47747359-47747378 | MS.gene78125:CDS | 55.0% | |
| GGTGGTGACATGGTCGTTTC+CGG | + | chr4.4:47746452-47746471 | None:intergenic | 55.0% | |
| GTCGCATACCAAGGAGTTCC+TGG | - | chr4.4:47746601-47746620 | MS.gene78125:CDS | 55.0% | |
| TCCTTGGTATGCGACACGGA+GGG | + | chr4.4:47746596-47746615 | None:intergenic | 55.0% | |
| TCGGTGGATAGATCCACCGA+GGG | + | chr4.4:47746758-47746777 | None:intergenic | 55.0% | |
| TGGTTGGAGCTGAACCGATC+CGG | + | chr4.4:47746306-47746325 | None:intergenic | 55.0% | |
| TTCGGTGGATAGATCCACCG+AGG | + | chr4.4:47746759-47746778 | None:intergenic | 55.0% | |
| TTGTGCCCTAACCTCAGCCA+TGG | + | chr4.4:47747367-47747386 | None:intergenic | 55.0% | |
| ! | CCACCGAGGGAGTTTTCAAC+CGG | + | chr4.4:47746745-47746764 | None:intergenic | 55.0% |
| !! | CCAATCGGCTCGGTTTGAAC+CGG | + | chr4.4:47746368-47746387 | None:intergenic | 55.0% |
| ACCCTCCGTGTCGCATACCA+AGG | - | chr4.4:47746592-47746611 | MS.gene78125:CDS | 60.0% | |
| AGCTTTACCGGCAGCGGCTT+CGG | + | chr4.4:47746635-47746654 | None:intergenic | 60.0% | |
| CACGGCATGGCTTCGCTGTT+CGG | + | chr4.4:47746661-47746680 | None:intergenic | 60.0% | |
| CCGGTTCAAACCGAGCCGAT+TGG | - | chr4.4:47746365-47746384 | MS.gene78125:CDS | 60.0% | |
| CCGGTTGAAAACTCCCTCGG+TGG | - | chr4.4:47746742-47746761 | MS.gene78125:CDS | 60.0% | |
| CGCCCCTCGTTAAACCGGAT+CGG | - | chr4.4:47746289-47746308 | MS.gene78125:CDS | 60.0% | |
| CGCTGATCGCGCAGTTCTAC+CGG | - | chr4.4:47746723-47746742 | MS.gene78125:CDS | 60.0% | |
| CTCCTTGGTATGCGACACGG+AGG | + | chr4.4:47746597-47746616 | None:intergenic | 60.0% | |
| CTTCTCCGACGATGTGGAGG+CGG | + | chr4.4:47746804-47746823 | None:intergenic | 60.0% | |
| GAGGCCGTTGACGATACAGC+TGG | - | chr4.4:47746961-47746980 | MS.gene78125:CDS | 60.0% | |
| GATCGGTTACGGCGGCGTTA+TGG | + | chr4.4:47746483-47746502 | None:intergenic | 60.0% | |
| GCACGCGCTGCAGAGCTTTA+CGG | - | chr4.4:47747039-47747058 | MS.gene78125:CDS | 60.0% | |
| GGAGGAGGTCGTAGTTTCGG+TGG | + | chr4.4:47746774-47746793 | None:intergenic | 60.0% | |
| GGGTTCGCCCCTCGTTAAAC+CGG | - | chr4.4:47746284-47746303 | MS.gene78125:CDS | 60.0% | |
| GGTTTAACGAGGGGCGAACC+CGG | + | chr4.4:47746285-47746304 | None:intergenic | 60.0% | |
| TGACGATACAGCTGGTGCGG+CGG | - | chr4.4:47746969-47746988 | MS.gene78125:CDS | 60.0% | |
| !! | ATCGGCTCGGTTTGAACCGG+TGG | + | chr4.4:47746365-47746384 | None:intergenic | 60.0% |
| !! | CATCGGTGCCGGAGATAGGT+CGG | + | chr4.4:47746563-47746582 | None:intergenic | 60.0% |
| !! | CTATCTCCGGCACCGATGCA+CGG | - | chr4.4:47746565-47746584 | MS.gene78125:CDS | 60.0% |
| !! | TGGCCGTCCGATTCGAGTTG+TGG | - | chr4.4:47747278-47747297 | MS.gene78125:CDS | 60.0% |
| AAGCTCTGCAGCGCGTGCAC+TGG | + | chr4.4:47747037-47747056 | None:intergenic | 65.0% | |
| CGAATCGGACGGCCACGATG+AGG | + | chr4.4:47747273-47747292 | None:intergenic | 65.0% | |
| CGGAGGGTTGAGCCGTGCAT+CGG | + | chr4.4:47746580-47746599 | None:intergenic | 65.0% | |
| GCATACTCCGAAGCCGCTGC+CGG | - | chr4.4:47746625-47746644 | MS.gene78125:CDS | 65.0% | |
| GCGGCTTCGGAGTATGCTCC+AGG | + | chr4.4:47746622-47746641 | None:intergenic | 65.0% | |
| GGCCGTTGACGGTGGTGACA+TGG | + | chr4.4:47746462-47746481 | None:intergenic | 65.0% | |
| GGCGGCGTTATGGCCGTTGA+CGG | + | chr4.4:47746473-47746492 | None:intergenic | 65.0% | |
| GGCGTTATGGCCGTTGACGG+TGG | + | chr4.4:47746470-47746489 | None:intergenic | 65.0% | |
| GGGGCGAACCCGGTTCAGAT+AGG | + | chr4.4:47746275-47746294 | None:intergenic | 65.0% | |
| TGGCGATGGCAGCAGTGTCG+CGG | + | chr4.4:47747017-47747036 | None:intergenic | 65.0% | |
| ! | GTTGAGCCGTGCATCGGTGC+CGG | + | chr4.4:47746574-47746593 | None:intergenic | 65.0% |
| ! | TTCGGACTCCTGGAAGCGCG+AGG | + | chr4.4:47746852-47746871 | None:intergenic | 65.0% |
| !! | CGTGCATCGGTGCCGGAGAT+AGG | + | chr4.4:47746567-47746586 | None:intergenic | 65.0% |
| CACTGCCTCCTCGCGCTTCC+AGG | - | chr4.4:47746841-47746860 | MS.gene78125:CDS | 70.0% | |
| CGACGATGTGGAGGCGGTGG+CGG | + | chr4.4:47746798-47746817 | None:intergenic | 70.0% | |
| CGATGGCAGCAGTGTCGCGG+AGG | + | chr4.4:47747014-47747033 | None:intergenic | 70.0% | |
| CGCCACCGCCTCCACATCGT+CGG | - | chr4.4:47746796-47746815 | MS.gene78125:CDS | 70.0% | |
| CGGCCTCAACGTAGCGCGTG+AGG | - | chr4.4:47746942-47746961 | MS.gene78125:CDS | 70.0% | |
| CGGCCTCACGCGCTACGTTG+AGG | + | chr4.4:47746948-47746967 | None:intergenic | 70.0% | |
| CTCCGACGATGTGGAGGCGG+TGG | + | chr4.4:47746801-47746820 | None:intergenic | 70.0% | |
| GAAGCGCGAGGAGGCAGTGG+TGG | + | chr4.4:47746840-47746859 | None:intergenic | 70.0% | |
| ! | CGCGAGGAGGCAGTGGTGGA+CGG | + | chr4.4:47746836-47746855 | None:intergenic | 70.0% |
| ! | CTGGAAGCGCGAGGAGGCAG+TGG | + | chr4.4:47746843-47746862 | None:intergenic | 70.0% |
| ! | GGACTCCTGGAAGCGCGAGG+AGG | + | chr4.4:47746849-47746868 | None:intergenic | 70.0% |
| ! | TGCAGCGCGTGCACTGGCGA+TGG | + | chr4.4:47747031-47747050 | None:intergenic | 70.0% |
| !! | CGAGGAGGCAGTGGTGGACG+GGG | + | chr4.4:47746834-47746853 | None:intergenic | 70.0% |
| !! | GCGAGGAGGCAGTGGTGGAC+GGG | + | chr4.4:47746835-47746854 | None:intergenic | 70.0% |
| ! | CGATGTGGAGGCGGTGGCGG+AGG | + | chr4.4:47746795-47746814 | None:intergenic | 75.0% |
| !! | TGTGGAGGCGGTGGCGGAGG+AGG | + | chr4.4:47746792-47746811 | None:intergenic | 75.0% |
| !!! | GGAGGCGGTGGCGGAGGAGG+AGG | + | chr4.4:47746789-47746808 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 47746235 | 47747488 | 47746235 | ID=MS.gene78125 |
| chr4.4 | mRNA | 47746235 | 47747488 | 47746235 | ID=MS.gene78125.t1;Parent=MS.gene78125 |
| chr4.4 | exon | 47746235 | 47747488 | 47746235 | ID=MS.gene78125.t1.exon1;Parent=MS.gene78125.t1 |
| chr4.4 | CDS | 47746235 | 47747488 | 47746235 | ID=cds.MS.gene78125.t1;Parent=MS.gene78125.t1 |
| Gene Sequence |
| Protein sequence |
