AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene78408

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene78408.t1 MTR_5g032760 89.600 125 10 1 1 122 40 164 1.76e-45 145
MS.gene78408.t1 MTR_2g097650 98.507 67 1 0 56 122 3 69 3.57e-40 128
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 23 sgRNAs with CRISPR-Local

Find 184 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCAGGTGGACTAGTGCTTT+TGG 0.225862 2.3:+5441386 MS.gene78408:CDS
AGCATCGCGGGTTATAGTTT+GGG 0.348033 2.3:-5440174 None:intergenic
GAGCATCGCGGGTTATAGTT+TGG 0.349832 2.3:-5440175 None:intergenic
CCGCGATGCTCGCACAATTA+CGG 0.385032 2.3:+5440187 MS.gene78408:CDS
TCGTCGCGAGGTGGCAATCC+AGG 0.433703 2.3:-5441321 None:intergenic
AGACTTGATGACAATGGGCC+TGG 0.438601 2.3:+5441303 MS.gene78408:CDS
CGTAATTGTGCGAGCATCGC+GGG 0.445247 2.3:-5440186 None:intergenic
ATTAAAATGTGACGCTGCTA+TGG 0.476209 2.3:+5439020 MS.gene78408:CDS
GATGATGGCAATGGTGGTAA+TGG 0.487379 2.3:+5441342 MS.gene78408:CDS
AGATTAGACTTGATGACAAT+GGG 0.494836 2.3:+5441298 MS.gene78408:CDS
TTGCCACCTCGCGACGATGA+TGG 0.502965 2.3:+5441327 MS.gene78408:CDS
GGTAATGGAGGAGGCGATGG+TGG 0.504915 2.3:+5441357 MS.gene78408:CDS
GGTGGTAATGGAGGAGGCGA+TGG 0.510128 2.3:+5441354 MS.gene78408:CDS
CAATGTCTTTAAGAATGTCT+AGG 0.523559 2.3:-5441422 None:intergenic
AAGATTAGACTTGATGACAA+TGG 0.549867 2.3:+5441297 MS.gene78408:CDS
GGCAATGGTGGTAATGGAGG+AGG 0.557103 2.3:+5441348 MS.gene78408:CDS
CGCACAATTACGGTTACTCC+TGG 0.560145 2.3:+5440197 MS.gene78408:CDS
CCTCGCGACGATGATGGCAA+TGG 0.603587 2.3:+5441333 MS.gene78408:CDS
CGCGACGATGATGGCAATGG+TGG 0.606298 2.3:+5441336 MS.gene78408:CDS
GATGGCAATGGTGGTAATGG+AGG 0.610367 2.3:+5441345 MS.gene78408:CDS
TTGCCATCATCGTCGCGAGG+TGG 0.640575 2.3:-5441330 None:intergenic
CCGTAATTGTGCGAGCATCG+CGG 0.652509 2.3:-5440187 None:intergenic
CCATTGCCATCATCGTCGCG+AGG 0.726947 2.3:-5441333 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATGAATATTTCATAATTA+AGG + chr2.3:5440509-5440528 MS.gene78408:intron 10.0%
!! AAAAAAACTAATAAGATTGT+AGG - chr2.3:5440864-5440883 None:intergenic 15.0%
!! ACAGAATAAAAAATCAATTA+AGG - chr2.3:5441201-5441220 None:intergenic 15.0%
!! ATACCATATAACATAAAAAA+AGG + chr2.3:5438958-5438977 MS.gene78408:CDS 15.0%
!! CAGAATAAAAAATCAATTAA+GGG - chr2.3:5441200-5441219 None:intergenic 15.0%
!! TACCATATAACATAAAAAAA+GGG + chr2.3:5438959-5438978 MS.gene78408:CDS 15.0%
!! TATATCATAATCCAATATAA+CGG + chr2.3:5439375-5439394 MS.gene78408:intron 15.0%
!!! ATCAATTAACAGTTTTATTT+TGG - chr2.3:5439227-5439246 None:intergenic 15.0%
!! CAACAACAGTAAATTTATAA+AGG + chr2.3:5440753-5440772 MS.gene78408:intron 20.0%
!! TATATTTGTATACATAGACA+AGG - chr2.3:5441244-5441263 None:intergenic 20.0%
!! TTAAAGGAAAATAACAAGAA+TGG - chr2.3:5439686-5439705 None:intergenic 20.0%
!!! AATAATTTTTATCTTGCAAG+GGG + chr2.3:5439248-5439267 MS.gene78408:intron 20.0%
!!! AATTGCTAATTTTGTAGAAA+AGG - chr2.3:5441154-5441173 None:intergenic 20.0%
!!! ATGGAAATTTTGGATTTTAT+TGG + chr2.3:5440010-5440029 MS.gene78408:intron 20.0%
!!! ATTTTTTATAGGATGGAATA+TGG + chr2.3:5439942-5439961 MS.gene78408:intron 20.0%
!!! CTTTTATTCTTACTTTCAAT+CGG + chr2.3:5439983-5440002 MS.gene78408:intron 20.0%
!!! GAATAATTTTTATCTTGCAA+GGG + chr2.3:5439247-5439266 MS.gene78408:intron 20.0%
!!! TAAAGGATTTTGATATTAGA+AGG + chr2.3:5440770-5440789 MS.gene78408:intron 20.0%
!!! TATGGTATGGTTTTTTATTT+TGG + chr2.3:5439038-5439057 MS.gene78408:intron 20.0%
!!! TGAATAATTTTTATCTTGCA+AGG + chr2.3:5439246-5439265 MS.gene78408:intron 20.0%
! ACTTATCCAAAATTGTTTGT+TGG + chr2.3:5440055-5440074 MS.gene78408:intron 25.0%
! ATAGCATTTGTCATAATATG+TGG + chr2.3:5441087-5441106 MS.gene78408:intron 25.0%
! ATGATGACTAGTATAGAAAA+TGG - chr2.3:5440367-5440386 None:intergenic 25.0%
! ATGCTATATGATATTCTTGT+TGG + chr2.3:5439134-5439153 MS.gene78408:intron 25.0%
!! ATCTATTTTCCTATTCTATC+TGG - chr2.3:5439498-5439517 None:intergenic 25.0%
!! CATTTGAAGTGCATAAATAA+TGG + chr2.3:5440570-5440589 MS.gene78408:intron 25.0%
!! TCTATTTTCCTATTCTATCT+GGG - chr2.3:5439497-5439516 None:intergenic 25.0%
!!! AACAGGGGATTTTTATTTTT+TGG + chr2.3:5440834-5440853 MS.gene78408:intron 25.0%
!!! TCCAACATCATATCATTTTT+TGG - chr2.3:5440250-5440269 None:intergenic 25.0%
!!! TGCCCTTTTTTTATGTTATA+TGG - chr2.3:5438964-5438983 None:intergenic 25.0%
!!! TGTATTGTTTGTTTTACACT+GGG + chr2.3:5440298-5440317 MS.gene78408:intron 25.0%
!!! TTGTATTGTTTGTTTTACAC+TGG + chr2.3:5440297-5440316 MS.gene78408:intron 25.0%
!!! TTTCTGTAGGCATTTTTTAT+AGG + chr2.3:5439931-5439950 MS.gene78408:intron 25.0%
AAATCTGTCTACTTAACTGA+AGG + chr2.3:5440810-5440829 MS.gene78408:intron 30.0%
AAGTTTCATATGTATGAGAG+TGG - chr2.3:5439845-5439864 None:intergenic 30.0%
AATCTGTCTACTTAACTGAA+GGG + chr2.3:5440811-5440830 MS.gene78408:intron 30.0%
AATGCCTACAGAAAAATCAA+TGG - chr2.3:5439925-5439944 None:intergenic 30.0%
ACAAAACACTATCTACAGAA+GGG - chr2.3:5440913-5440932 None:intergenic 30.0%
ACATGTAACATTCTGTAGAA+AGG - chr2.3:5440138-5440157 None:intergenic 30.0%
ACCTTACCAACTTATCAAAA+AGG - chr2.3:5439203-5439222 None:intergenic 30.0%
ACTAGTATAGAAAATGGAAG+AGG - chr2.3:5440361-5440380 None:intergenic 30.0%
ATCAGGTTTCTTCTATAGTA+AGG - chr2.3:5439468-5439487 None:intergenic 30.0%
ATGTAACATTCTGTAGAAAG+GGG - chr2.3:5440136-5440155 None:intergenic 30.0%
CATGTAACATTCTGTAGAAA+GGG - chr2.3:5440137-5440156 None:intergenic 30.0%
CATTTGTCATAATATGTGGA+CGG + chr2.3:5441091-5441110 MS.gene78408:intron 30.0%
CTAAATCAATATCAAAGCGT+AGG + chr2.3:5440467-5440486 MS.gene78408:intron 30.0%
CTATCAGAAACATATCTGAA+TGG - chr2.3:5439581-5439600 None:intergenic 30.0%
GCCAAAAAATGATATGATGT+TGG + chr2.3:5440246-5440265 MS.gene78408:intron 30.0%
TACAAAACACTATCTACAGA+AGG - chr2.3:5440914-5440933 None:intergenic 30.0%
TAGGATTCAACAGAAGTTAA+AGG - chr2.3:5439702-5439721 None:intergenic 30.0%
TCAATAAAGACACTGATGTA+TGG - chr2.3:5440442-5440461 None:intergenic 30.0%
TGCATAAATAATGGCTTTCT+TGG + chr2.3:5440579-5440598 MS.gene78408:intron 30.0%
TGTTTGCTTTCTTTATGCTA+TGG + chr2.3:5439072-5439091 MS.gene78408:intron 30.0%
! AAATGAATAGAGTTGAGTTG+TGG - chr2.3:5441130-5441149 None:intergenic 30.0%
! AAGATTAGACTTGATGACAA+TGG + chr2.3:5441297-5441316 MS.gene78408:CDS 30.0%
! AATCGGAATCATGGAAATTT+TGG + chr2.3:5440000-5440019 MS.gene78408:intron 30.0%
! AGATTAGACTTGATGACAAT+GGG + chr2.3:5441298-5441317 MS.gene78408:CDS 30.0%
! ATCAGTCCTTTTTGATAAGT+TGG + chr2.3:5439194-5439213 MS.gene78408:intron 30.0%
! CAATGTCTTTAAGAATGTCT+AGG - chr2.3:5441425-5441444 None:intergenic 30.0%
! CATTCAGATATGTTTCTGAT+AGG + chr2.3:5439579-5439598 MS.gene78408:intron 30.0%
! GTTTGTTTGATGGTTTCTTA+TGG + chr2.3:5440990-5441009 MS.gene78408:intron 30.0%
!! ATCTTTTTGTCTGTCATTTC+AGG - chr2.3:5441282-5441301 None:intergenic 30.0%
!!! TCCTTTTTGATAAGTTGGTA+AGG + chr2.3:5439199-5439218 MS.gene78408:intron 30.0%
!!! TGTAGGCATTTTTTATAGGA+TGG + chr2.3:5439935-5439954 MS.gene78408:intron 30.0%
!!! TGTTCCATTGATTTTTCTGT+AGG + chr2.3:5439918-5439937 MS.gene78408:intron 30.0%
AAACATATCTGAATGGTCAC+TGG - chr2.3:5439574-5439593 None:intergenic 35.0%
AACCATCAAACAAACACACT+TGG - chr2.3:5440985-5441004 None:intergenic 35.0%
AACTGAAACGAAACCATTCT+AGG - chr2.3:5440945-5440964 None:intergenic 35.0%
ACAAGAGGCAATGAAGAAAT+TGG - chr2.3:5439821-5439840 None:intergenic 35.0%
ACTAGGATGCATGATTGTAA+AGG - chr2.3:5440612-5440631 None:intergenic 35.0%
ATCGAAAACCCAGATAGAAT+AGG + chr2.3:5439486-5439505 MS.gene78408:intron 35.0%
ATTAAAATGTGACGCTGCTA+TGG + chr2.3:5439020-5439039 MS.gene78408:CDS 35.0%
CAATGCAAAGAAGCTAGAAA+AGG + chr2.3:5440715-5440734 MS.gene78408:intron 35.0%
CGATATTCTGATGTCTTGTA+TGG + chr2.3:5440082-5440101 MS.gene78408:intron 35.0%
CTTACTTTCAATCGGAATCA+TGG + chr2.3:5439991-5440010 MS.gene78408:intron 35.0%
GATATAAAATCCCGCCATAT+TGG - chr2.3:5439361-5439380 None:intergenic 35.0%
GATCAAGATAGGAAAGTGAT+AGG - chr2.3:5439721-5439740 None:intergenic 35.0%
GCAATGAAGAAATTGGAACT+AGG - chr2.3:5439814-5439833 None:intergenic 35.0%
GCTTTCTTTATGCTATGGTA+TGG + chr2.3:5439077-5439096 MS.gene78408:intron 35.0%
TCATATTCGGATGTCTTGTA+TGG + chr2.3:5440108-5440127 MS.gene78408:intron 35.0%
TCTTGTATGGTGCTCATATT+CGG + chr2.3:5440095-5440114 MS.gene78408:intron 35.0%
TTGTAGTCTGTTTCCTAGAA+TGG + chr2.3:5440929-5440948 MS.gene78408:intron 35.0%
TTGTGCAAAAGGTCTATGTT+AGG + chr2.3:5439617-5439636 MS.gene78408:intron 35.0%
! ACATAGACCTTTTGCACAAA+AGG - chr2.3:5439616-5439635 None:intergenic 35.0%
! CGTAGACCAACAAACAATTT+TGG - chr2.3:5440064-5440083 None:intergenic 35.0%
! CTTTTGACCTTTTGTGCAAA+AGG + chr2.3:5439606-5439625 MS.gene78408:intron 35.0%
! CTTTTGCACAAAAGGTCAAA+AGG - chr2.3:5439608-5439627 None:intergenic 35.0%
! TGTTTGATGGTTTCTTATGG+AGG + chr2.3:5440993-5441012 MS.gene78408:intron 35.0%
!! TTACCGGTGTTGTCAAATAT+CGG + chr2.3:5439282-5439301 MS.gene78408:intron 35.0%
!! TTTGAGTTGGACTTATTACC+AGG - chr2.3:5440218-5440237 None:intergenic 35.0%
!!! TTGGCAGAAGTTTTTTGAGT+TGG - chr2.3:5440231-5440250 None:intergenic 35.0%
AAACAGTTAGCAGCATGTGA+CGG - chr2.3:5439749-5439768 None:intergenic 40.0%
AACTATGTCCCATTGAGTCA+TGG - chr2.3:5440656-5440675 None:intergenic 40.0%
ATATTGGCCGAAATTTGGCA+TGG - chr2.3:5439345-5439364 None:intergenic 40.0%
ATGACTCAATGGGACATAGT+TGG + chr2.3:5440655-5440674 MS.gene78408:intron 40.0%
ATGCCAAATTTCGGCCAATA+TGG + chr2.3:5439344-5439363 MS.gene78408:intron 40.0%
ATGTATGAGAGTGGTACAAG+AGG - chr2.3:5439836-5439855 None:intergenic 40.0%
CAAAAGGTCTATGTTAGGAG+GGG + chr2.3:5439622-5439641 MS.gene78408:intron 40.0%
CAATCATGCATCCTAGTGAT+TGG + chr2.3:5440615-5440634 MS.gene78408:intron 40.0%
CTACTTAACTGAAGGGAACA+GGG + chr2.3:5440818-5440837 MS.gene78408:intron 40.0%
GAACTAGGAAGAGACTAAAG+TGG - chr2.3:5439799-5439818 None:intergenic 40.0%
GATATTTGACAACACCGGTA+AGG - chr2.3:5439283-5439302 None:intergenic 40.0%
GCAAAAGGTCTATGTTAGGA+GGG + chr2.3:5439621-5439640 MS.gene78408:intron 40.0%
GTCCAAGTGTGTTTGTTTGA+TGG + chr2.3:5440980-5440999 MS.gene78408:intron 40.0%
TAATAGAGACTGCAACAAGC+AGG + chr2.3:5439532-5439551 MS.gene78408:intron 40.0%
TACTTAACTGAAGGGAACAG+GGG + chr2.3:5440819-5440838 MS.gene78408:intron 40.0%
TCTACTTAACTGAAGGGAAC+AGG + chr2.3:5440817-5440836 MS.gene78408:intron 40.0%
TGCAAAAGGTCTATGTTAGG+AGG + chr2.3:5439620-5439639 MS.gene78408:intron 40.0%
TGTAGGTCATACCAATCACT+AGG - chr2.3:5440629-5440648 None:intergenic 40.0%
! ATAGTTGGTTTAGGCGATAG+AGG + chr2.3:5440670-5440689 MS.gene78408:intron 40.0%
! CAATGGGACATAGTTGGTTT+AGG + chr2.3:5440661-5440680 MS.gene78408:intron 40.0%
! TGCTTGTTGCAGTCTCTATT+AGG - chr2.3:5439533-5439552 None:intergenic 40.0%
! TGTTTTACACTGGGACAAAC+TGG + chr2.3:5440307-5440326 MS.gene78408:intron 40.0%
! TTCTATCTGGGTTTTCGATC+AGG - chr2.3:5439485-5439504 None:intergenic 40.0%
!! CTAGTGCTTTTGGGTATTCT+TGG + chr2.3:5441396-5441415 MS.gene78408:CDS 40.0%
!! GGAGGTTTCTTTTGAAGAAC+TGG + chr2.3:5441011-5441030 MS.gene78408:intron 40.0%
!! TTCTAGCTTCTTTGCATTGC+AGG - chr2.3:5440714-5440733 None:intergenic 40.0%
!!! GATGGTGGTAATTTTTCAGG+TGG + chr2.3:5441372-5441391 MS.gene78408:CDS 40.0%
AACAGTTAGCAGCATGTGAC+GGG - chr2.3:5439748-5439767 None:intergenic 45.0%
AATATAACGGCGCCACAAAG+TGG + chr2.3:5439388-5439407 MS.gene78408:intron 45.0%
AATGGAAGAGGCCAACACAT+TGG - chr2.3:5440349-5440368 None:intergenic 45.0%
AATGTGACGCTGCTATGGTA+TGG + chr2.3:5439025-5439044 MS.gene78408:intron 45.0%
ACTTTGTGGCGCCGTTATAT+TGG - chr2.3:5439389-5439408 None:intergenic 45.0%
AGGGGAGCTTAATTCCTTAC+CGG + chr2.3:5439266-5439285 MS.gene78408:intron 45.0%
ATGGAAGAGGCCAACACATT+GGG - chr2.3:5440348-5440367 None:intergenic 45.0%
CAAATTTCGGCCAATATGGC+GGG + chr2.3:5439348-5439367 MS.gene78408:intron 45.0%
CCAAATTTCGGCCAATATGG+CGG + chr2.3:5439347-5439366 MS.gene78408:intron 45.0%
CTAGGAAGAGACTAAAGTGG+AGG - chr2.3:5439796-5439815 None:intergenic 45.0%
GTGTTGTCAAATATCGGCCA+TGG + chr2.3:5439288-5439307 MS.gene78408:intron 45.0%
TACAGCCTCCATGACTCAAT+GGG + chr2.3:5440645-5440664 MS.gene78408:intron 45.0%
TATGTCCCATTGAGTCATGG+AGG - chr2.3:5440653-5440672 None:intergenic 45.0%
TGGCCGATATTTGACAACAC+CGG - chr2.3:5439288-5439307 None:intergenic 45.0%
TTGTCAAATATCGGCCATGG+TGG + chr2.3:5439291-5439310 MS.gene78408:intron 45.0%
TTTAGCACCTCCCAATGTGT+TGG + chr2.3:5440335-5440354 MS.gene78408:intron 45.0%
! AGCATCGCGGGTTATAGTTT+GGG - chr2.3:5440177-5440196 None:intergenic 45.0%
! ATCTGAATGGTCACTGGTCT+TGG - chr2.3:5439568-5439587 None:intergenic 45.0%
! GATGATGGCAATGGTGGTAA+TGG + chr2.3:5441342-5441361 MS.gene78408:CDS 45.0%
! TGACGGGTAAGGATCAAGAT+AGG - chr2.3:5439732-5439751 None:intergenic 45.0%
!! ATATCGGCCATGGTGGATAT+TGG + chr2.3:5439298-5439317 MS.gene78408:intron 45.0%
!! GCAGCGTCACATTTTAATCG+AGG - chr2.3:5439018-5439037 None:intergenic 45.0%
!! GGCGATGGTGGTAATTTTTC+AGG + chr2.3:5441369-5441388 MS.gene78408:CDS 45.0%
!!! GGATATTGGTGGTGGCTTTT+GGG + chr2.3:5439312-5439331 MS.gene78408:intron 45.0%
!!! TCAGGTGGACTAGTGCTTTT+GGG + chr2.3:5441387-5441406 MS.gene78408:CDS 45.0%
!!! TGGATATTGGTGGTGGCTTT+TGG + chr2.3:5439311-5439330 MS.gene78408:intron 45.0%
!!! TTCAGGTGGACTAGTGCTTT+TGG + chr2.3:5441386-5441405 MS.gene78408:CDS 45.0%
CATTGAGTCATGGAGGCTGT+AGG - chr2.3:5440646-5440665 None:intergenic 50.0%
CCGCCATATTGGCCGAAATT+TGG - chr2.3:5439350-5439369 None:intergenic 50.0%
CGCACAATTACGGTTACTCC+TGG + chr2.3:5440197-5440216 MS.gene78408:CDS 50.0%
CTACAGCCTCCATGACTCAA+TGG + chr2.3:5440644-5440663 MS.gene78408:intron 50.0%
CTCACCGCCATGCCAAATTT+CGG + chr2.3:5439335-5439354 MS.gene78408:intron 50.0%
GAGCCAAAATCCTGCCAAAC+CGG - chr2.3:5439414-5439433 None:intergenic 50.0%
GTAAGGAGCAGTGTTGCCAA+TGG - chr2.3:5439451-5439470 None:intergenic 50.0%
TTGGCCGAAATTTGGCATGG+CGG - chr2.3:5439342-5439361 None:intergenic 50.0%
! AGACTTGATGACAATGGGCC+TGG + chr2.3:5441303-5441322 MS.gene78408:CDS 50.0%
! GAGCATCGCGGGTTATAGTT+TGG - chr2.3:5440178-5440197 None:intergenic 50.0%
! GTTGGTTTAGGCGATAGAGG+TGG + chr2.3:5440673-5440692 MS.gene78408:intron 50.0%
!! GATGGCAATGGTGGTAATGG+AGG + chr2.3:5441345-5441364 MS.gene78408:CDS 50.0%
!! TTAGCAGCATGTGACGGGTA+AGG - chr2.3:5439743-5439762 None:intergenic 50.0%
AGGAGCAGTGTTGCCAATGG+CGG - chr2.3:5439448-5439467 None:intergenic 55.0%
CCGCGATGCTCGCACAATTA+CGG + chr2.3:5440187-5440206 MS.gene78408:CDS 55.0%
GAAGAGGCCAACACATTGGG+AGG - chr2.3:5440345-5440364 None:intergenic 55.0%
GCCACCACCAATATCCACCA+TGG - chr2.3:5439308-5439327 None:intergenic 55.0%
! CCGTAATTGTGCGAGCATCG+CGG - chr2.3:5440190-5440209 None:intergenic 55.0%
! CGTAATTGTGCGAGCATCGC+GGG - chr2.3:5440189-5440208 None:intergenic 55.0%
!! GCCATGGTGGATATTGGTGG+TGG + chr2.3:5439304-5439323 MS.gene78408:intron 55.0%
!! GGCAATGGTGGTAATGGAGG+AGG + chr2.3:5441348-5441367 MS.gene78408:CDS 55.0%
!! TCGGCCATGGTGGATATTGG+TGG + chr2.3:5439301-5439320 MS.gene78408:intron 55.0%
!!! AGGATTTTGGCTCTCCGCCA+TGG + chr2.3:5439421-5439440 MS.gene78408:intron 55.0%
!!! TGGCCGGTTTGGCAGGATTT+TGG + chr2.3:5439408-5439427 MS.gene78408:intron 55.0%
CCATTGCCATCATCGTCGCG+AGG - chr2.3:5441336-5441355 None:intergenic 60.0%
GTGTTGCCAATGGCGGTCCA+TGG - chr2.3:5439441-5439460 None:intergenic 60.0%
TAACGGCGCCACAAAGTGGC+CGG + chr2.3:5439392-5439411 MS.gene78408:intron 60.0%
TTGCCAATGGCGGTCCATGG+CGG - chr2.3:5439438-5439457 None:intergenic 60.0%
TTGCCACCTCGCGACGATGA+TGG + chr2.3:5441327-5441346 MS.gene78408:CDS 60.0%
TTGCCATCATCGTCGCGAGG+TGG - chr2.3:5441333-5441352 None:intergenic 60.0%
! CCTCGCGACGATGATGGCAA+TGG + chr2.3:5441333-5441352 MS.gene78408:CDS 60.0%
! CGCGACGATGATGGCAATGG+TGG + chr2.3:5441336-5441355 MS.gene78408:CDS 60.0%
! CTGCCAAACCGGCCACTTTG+TGG - chr2.3:5439403-5439422 None:intergenic 60.0%
!! CACAAAGTGGCCGGTTTGGC+AGG + chr2.3:5439401-5439420 MS.gene78408:intron 60.0%
!! GGTAATGGAGGAGGCGATGG+TGG + chr2.3:5441357-5441376 MS.gene78408:CDS 60.0%
!! GGTGGTAATGGAGGAGGCGA+TGG + chr2.3:5441354-5441373 MS.gene78408:CDS 60.0%
GCGCCACAAAGTGGCCGGTT+TGG + chr2.3:5439397-5439416 MS.gene78408:intron 65.0%
TCGTCGCGAGGTGGCAATCC+AGG - chr2.3:5441324-5441343 None:intergenic 65.0%
TCTCCGCCATGGACCGCCAT+TGG + chr2.3:5439432-5439451 MS.gene78408:intron 65.0%


Chromosome Type Strat End Strand Name
chr2.3 gene 5438949 5441494 5438949 ID=MS.gene78408
chr2.3 mRNA 5438949 5441494 5438949 ID=MS.gene78408.t1;Parent=MS.gene78408
chr2.3 exon 5438949 5439041 5438949 ID=MS.gene78408.t1.exon1;Parent=MS.gene78408.t1
chr2.3 CDS 5438949 5439041 5438949 ID=cds.MS.gene78408.t1;Parent=MS.gene78408.t1
chr2.3 exon 5440146 5440218 5440146 ID=MS.gene78408.t1.exon2;Parent=MS.gene78408.t1
chr2.3 CDS 5440146 5440218 5440146 ID=cds.MS.gene78408.t1;Parent=MS.gene78408.t1
chr2.3 exon 5441292 5441494 5441292 ID=MS.gene78408.t1.exon3;Parent=MS.gene78408.t1
chr2.3 CDS 5441292 5441494 5441292 ID=cds.MS.gene78408.t1;Parent=MS.gene78408.t1
Gene Sequence

>MS.gene78408

ATGAGACGCATACCATATAACATAAAAAAAGGGCAGCTTCAGACTTCAGCTTTTCAAACTATATCACCTCGATTAAAATGTGACGCTGCTATGGTATGGTTTTTTATTTTGGAATTTGTTGATTGTTTGCTTTCTTTATGCTATGGTATGGTTATTTTTATTTCTGTTGATTGTTTGCTTTCTTTATGCTATATGATATTCTTGTTGGAAAGTATTAGCAGCGTTTTGTGTTATTGCAATGTCAAATCAGTCCTTTTTGATAAGTTGGTAAGGTTCCAAAATAAAACTGTTAATTGATGAATAATTTTTATCTTGCAAGGGGAGCTTAATTCCTTACCGGTGTTGTCAAATATCGGCCATGGTGGATATTGGTGGTGGCTTTTGGGCTCACCGCCATGCCAAATTTCGGCCAATATGGCGGGATTTTATATCATAATCCAATATAACGGCGCCACAAAGTGGCCGGTTTGGCAGGATTTTGGCTCTCCGCCATGGACCGCCATTGGCAACACTGCTCCTTACTATAGAAGAAACCTGATCGAAAACCCAGATAGAATAGGAAAATAGATTATAAAATGATACCTAATAGAGACTGCAACAAGCAGGCAGACTGCAACCAAGACCAGTGACCATTCAGATATGTTTCTGATAGGAGACCTTTTGACCTTTTGTGCAAAAGGTCTATGTTAGGAGGGGTAATGTATTATGTAGAGATAGAAATGTAACTAACAGTTCCATTCTTGTTATTTTCCTTTAACTTCTGTTGAATCCTATCACTTTCCTATCTTGATCCTTACCCGTCACATGCTGCTAACTGTTTACACTGTTTCTCTTCTATCTGAATCCTCCACTTTAGTCTCTTCCTAGTTCCAATTTCTTCATTGCCTCTTGTACCACTCTCATACATATGAAACTTTTTAAGTAGAGAAGTTTAATGTCTGTTTGTTGACTGTTGATTGATTCGCTGCATGTTCCATTGATTTTTCTGTAGGCATTTTTTATAGGATGGAATATGGAAGTAAATGTTGTTTGATCTTTTATTCTTACTTTCAATCGGAATCATGGAAATTTTGGATTTTATTGGTGAATCATTGACTAATAGAAAAACTTATCCAAAATTGTTTGTTGGTCTACGATATTCTGATGTCTTGTATGGTGCTCATATTCGGATGTCTTGTATGGCACCCCTTTCTACAGAATGTTACATGTGCTGCTGCTGCTGCAACCCAAACTATAACCCGCGATGCTCGCACAATTACGGTTACTCCTGGTAATAAGTCCAACTCAAAAAACTTCTGCCAAAAAATGATATGATGTTGGAGAAAGTATATAATGTTAGATTGCTAAGTTGTATTGTTTGTTTTACACTGGGACAAACTGGAACTATTTAGCACCTCCCAATGTGTTGGCCTCTTCCATTTTCTATACTAGTCATCATGTGCATATTAGTAAATAGTTTATGTATATAAATTTCATTCTTCTTTCTTCTGCCATACATCAGTGTCTTTATTGAAATAACTAAATCAATATCAAAGCGTAGGTTTTTTATGTGAGAAACAAATATGAATATTTCATAATTAAGGTATGCACACTCAAATGTTTGTTTCTTTCAAATAGAAGTCATTTGAAGTGCATAAATAATGGCTTTCTTGGATCTTTTCCTTTACAATCATGCATCCTAGTGATTGGTATGACCTACAGCCTCCATGACTCAATGGGACATAGTTGGTTTAGGCGATAGAGGTGGTTTTCTTGCTTAATACCTGCAATGCAAAGAAGCTAGAAAAGGAACTCAAATGAGTAGCAACAACAGTAAATTTATAAAGGATTTTGATATTAGAAGGTTAAAATAAATAGTTTCAAATCTGTCTACTTAACTGAAGGGAACAGGGGATTTTTATTTTTTGGTGCTCCTACAATCTTATTAGTTTTTTTTTGACAACACAATCTTATTAGTTTTTCCCTTCTGTAGATAGTGTTTTGTAGTCTGTTTCCTAGAATGGTTTCGTTTCAGTTTTGTTGTCTTTATTTGTCCAAGTGTGTTTGTTTGATGGTTTCTTATGGAGGTTTCTTTTGAAGAACTGGAAACATTTACTACAAATTGCACGACTTGACATTTTGTAAATAAATAATAATATATAGCATTTGTCATAATATGTGGACGGATACTATTGAAATCCACAACTCAACTCTATTCATTTACCTTTTCTACAAAATTAGCAATTATGTACATGTAAATGTTGTTTCACCCTTAATTGATTTTTTATTCTGTGTTTCGAATAATTATACGTTCCTTGTCTATGTATACAAATATAATTTGCTATCATTTTCCTGAAATGACAGACAAAAAGATTAGACTTGATGACAATGGGCCTGGATTGCCACCTCGCGACGATGATGGCAATGGTGGTAATGGAGGAGGCGATGGTGGTAATTTTTCAGGTGGACTAGTGCTTTTGGGTATTCTTGGTGTCCTAGACATTCTTAAAGACATTGAGAGTGAAATTCAACGCAAAGTCAAAGATAGCAGATTTGATCAAGCTTGA
Protein sequence

>MS.gene78408.t1

MRRIPYNIKKGQLQTSAFQTISPRLKCDAAMNVTCAAAAATQTITRDARTITVTPDKKIRLDDNGPGLPPRDDDGNGGNGGGDGGNFSGGLVLLGILGVLDILKDIESEIQRKVKDSRFDQA