AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene78420

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene78420.t1 MTR_2g097410 96.635 743 25 0 1 743 1 743 0.0 1501
MS.gene78420.t1 MTR_4g064150 57.823 735 251 12 21 743 48 735 0.0 804
MS.gene78420.t1 MTR_4g064120 56.897 696 206 10 54 743 21 628 0.0 764
MS.gene78420.t1 MTR_4g064180 56.466 696 209 10 54 743 21 628 0.0 752
MS.gene78420.t1 MTR_4g064160 48.892 722 313 17 35 743 8 686 0.0 625
MS.gene78420.t1 MTR_7g062120 44.585 711 330 17 61 743 68 742 0.0 566
MS.gene78420.t1 MTR_4g064200 52.677 467 192 6 294 743 198 652 5.59e-167 496
MS.gene78420.t1 MTR_2g097467 52.328 451 205 4 295 743 214 656 4.36e-165 491
MS.gene78420.t1 MTR_2g097463 50.531 471 209 5 284 743 200 657 5.01e-163 486
MS.gene78420.t1 MTR_2g097473 50.855 468 209 5 284 743 202 656 1.81e-162 484
MS.gene78420.t1 MTR_2g097310 52.516 457 200 8 291 743 197 640 3.23e-159 476
MS.gene78420.t1 MTR_2g097350 51.902 447 197 9 302 743 209 642 4.65e-154 462
MS.gene78420.t1 MTR_2g097390 51.454 447 199 9 302 743 210 643 2.21e-153 461
MS.gene78420.t1 MTR_2g097380 47.936 436 170 8 310 743 183 563 6.10e-133 405
MS.gene78420.t1 MTR_2g082090 32.979 376 245 4 367 740 208 578 7.01e-67 231
MS.gene78420.t1 MTR_3g056110 32.021 381 242 8 367 740 171 541 1.23e-60 214
MS.gene78420.t1 MTR_4g133660 30.607 379 255 5 366 741 170 543 1.46e-60 213
MS.gene78420.t1 MTR_5g094450 33.505 388 231 10 367 740 157 531 5.53e-60 211
MS.gene78420.t1 MTR_5g097480 30.851 376 253 4 367 740 173 543 1.21e-59 211
MS.gene78420.t1 MTR_7g027190 31.472 394 235 6 366 740 295 672 3.99e-56 204
MS.gene78420.t1 MTR_1g029420 29.679 374 256 4 369 740 223 591 1.22e-54 198
MS.gene78420.t1 MTR_2g026250 28.059 474 312 9 272 740 146 595 1.85e-54 198
MS.gene78420.t1 MTR_3g089055 30.851 376 249 7 369 740 201 569 2.72e-54 197
MS.gene78420.t1 MTR_3g089055 30.851 376 249 7 369 740 196 564 3.55e-54 196
MS.gene78420.t1 MTR_7g074650 31.793 368 235 6 375 742 442 793 2.83e-52 195
MS.gene78420.t1 MTR_8g442410 32.642 386 238 8 366 740 150 524 1.38e-50 186
MS.gene78420.t1 MTR_3g065980 31.218 394 231 6 366 740 167 539 2.68e-50 185
MS.gene78420.t1 MTR_4g104020 29.950 404 246 10 356 740 134 519 4.14e-50 184
MS.gene78420.t1 MTR_3g022830 26.555 418 250 6 372 740 26 435 3.71e-44 165
MS.gene78420.t1 MTR_4g102790 29.199 387 252 10 367 742 288 663 2.88e-43 167
MS.gene78420.t1 MTR_4g076140 26.402 428 250 5 371 740 48 468 3.33e-43 163
MS.gene78420.t1 MTR_4g076020 27.851 377 231 7 375 743 88 431 3.21e-42 159
MS.gene78420.t1 MTR_1g069725 27.518 407 264 12 343 741 80 463 3.36e-41 157
MS.gene78420.t1 MTR_4g097080 29.474 380 256 7 369 742 131 504 1.72e-40 156
MS.gene78420.t1 MTR_2g089100 26.290 407 259 9 368 743 49 445 3.39e-38 148
MS.gene78420.t1 MTR_2g034260 28.030 396 255 11 362 740 201 583 1.79e-36 145
MS.gene78420.t1 MTR_2g034250 28.354 395 256 8 362 740 201 584 3.52e-36 144
MS.gene78420.t1 MTR_4g077760 26.509 381 255 10 368 740 191 554 1.43e-35 142
MS.gene78420.t1 MTR_5g015490 28.125 384 258 7 371 742 114 491 4.30e-34 137
MS.gene78420.t1 MTR_8g065750 83.824 68 11 0 27 94 38 105 2.34e-32 121
MS.gene78420.t1 MTR_5g058860 26.253 419 271 12 346 741 94 497 6.93e-32 130
MS.gene78420.t1 MTR_2g034280 26.020 392 266 7 362 740 194 574 1.19e-31 131
MS.gene78420.t1 MTR_1g096030 27.456 397 243 14 371 740 80 458 1.55e-30 126
MS.gene78420.t1 MTR_3g072710 26.024 415 259 13 356 741 105 500 1.85e-30 126
MS.gene78420.t1 MTR_7g109580 28.093 388 248 11 366 740 184 553 2.80e-30 126
MS.gene78420.t1 MTR_6g047750 26.963 382 250 12 372 740 296 661 1.27e-29 125
MS.gene78420.t1 MTR_7g057230 25.867 375 259 8 372 740 295 656 2.29e-29 124
MS.gene78420.t1 MTR_5g015950 21.934 424 276 8 368 743 32 448 6.76e-27 115
MS.gene78420.t1 MTR_3g053270 21.934 424 276 8 368 743 32 448 6.76e-27 115
MS.gene78420.t1 MTR_4g095500 22.803 421 274 9 368 743 56 470 9.13e-27 115
MS.gene78420.t1 MTR_1g086970 25.505 396 255 13 366 740 101 477 3.37e-26 113
MS.gene78420.t1 MTR_5g009080 29.048 210 142 2 371 580 56 258 6.43e-26 112
MS.gene78420.t1 MTR_5g009080 28.188 149 107 0 592 740 329 477 2.13e-17 86.3
MS.gene78420.t1 MTR_3g087300 83.929 56 9 0 335 390 153 208 6.55e-24 100
MS.gene78420.t1 MTR_2g099110 26.733 303 204 6 371 667 74 364 1.01e-23 105
MS.gene78420.t1 MTR_8g093070 24.121 398 263 16 359 743 127 498 1.81e-22 102
MS.gene78420.t1 MTR_8g020840 24.365 394 242 14 358 727 163 524 3.85e-17 85.9
MS.gene78420.t1 MTR_0092s0100 23.016 378 259 8 372 740 376 730 1.06e-16 85.1
MS.gene78420.t1 MTR_0092s0100 23.016 378 259 8 372 740 373 727 1.07e-16 84.7
MS.gene78420.t1 MTR_4g026485 24.458 323 215 8 376 691 274 574 2.46e-16 83.6
MS.gene78420.t1 MTR_8g077940 22.691 379 262 12 372 740 183 540 8.87e-12 68.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene78420.t1 AT1G07530 49.000 700 315 10 68 743 86 767 0.0 634
MS.gene78420.t1 AT2G29060 47.323 691 267 14 62 742 53 656 0.0 583
MS.gene78420.t1 AT2G29060 47.338 695 298 14 62 742 53 693 0.0 579
MS.gene78420.t1 AT1G07520 45.586 691 295 12 69 743 70 695 0.0 560
MS.gene78420.t1 AT1G07520 45.586 691 295 12 69 743 71 696 0.0 560
MS.gene78420.t1 AT2G29065 44.695 754 282 18 1 743 1 630 0.0 557
MS.gene78420.t1 AT1G07520 51.337 561 218 10 194 743 15 531 0.0 548
MS.gene78420.t1 AT1G07520 51.337 561 218 10 194 743 15 531 0.0 548
MS.gene78420.t1 AT2G37650 41.690 710 318 15 61 742 73 714 1.81e-171 510
MS.gene78420.t1 AT2G37650 41.690 710 318 15 61 742 61 702 3.37e-171 509
MS.gene78420.t1 AT3G46600 50.783 447 207 5 297 743 116 549 2.84e-158 470
MS.gene78420.t1 AT3G46600 50.783 447 207 5 297 743 148 581 3.46e-158 471
MS.gene78420.t1 AT5G59450 47.410 502 246 8 257 743 102 600 1.50e-157 470
MS.gene78420.t1 AT3G46600 55.053 376 166 2 368 743 1 373 1.68e-150 443
MS.gene78420.t1 AT1G50600 31.915 376 249 4 367 740 155 525 4.00e-60 212
MS.gene78420.t1 AT1G50600 31.915 376 249 4 367 740 226 596 1.51e-59 212
MS.gene78420.t1 AT1G50600 31.915 376 249 4 367 740 230 600 2.40e-59 211
MS.gene78420.t1 AT5G48150 28.967 397 276 3 344 740 99 489 1.56e-58 206
MS.gene78420.t1 AT5G48150 28.967 397 276 3 344 740 99 489 1.56e-58 206
MS.gene78420.t1 AT5G48150 28.967 397 276 3 344 740 99 489 1.56e-58 206
MS.gene78420.t1 AT5G48150 28.967 397 276 3 344 740 99 489 1.56e-58 206
MS.gene78420.t1 AT2G04890 31.016 374 248 4 367 740 49 412 2.79e-58 204
MS.gene78420.t1 AT1G21450 29.825 456 303 9 292 740 147 592 5.26e-58 207
MS.gene78420.t1 AT1G66350 33.245 379 226 9 366 740 150 505 8.85e-52 188
MS.gene78420.t1 AT3G54220 30.095 422 277 7 324 742 245 651 1.28e-51 191
MS.gene78420.t1 AT4G17230 31.842 380 250 5 366 742 153 526 3.39e-51 187
MS.gene78420.t1 AT4G17230 31.842 380 250 5 366 742 153 526 3.39e-51 187
MS.gene78420.t1 AT2G01570 31.217 378 241 8 366 740 219 580 5.68e-49 182
MS.gene78420.t1 AT3G03450 29.894 378 251 8 366 740 178 544 5.84e-49 181
MS.gene78420.t1 AT1G14920 31.746 378 239 8 366 740 167 528 1.60e-48 180
MS.gene78420.t1 AT5G66770 33.231 325 203 7 375 696 224 537 1.86e-47 177
MS.gene78420.t1 AT1G50420 26.047 430 250 8 371 740 57 478 4.21e-44 166
MS.gene78420.t1 AT5G17490 27.632 380 251 8 366 740 155 515 2.40e-42 162
MS.gene78420.t1 AT3G50650 30.294 340 212 7 381 711 185 508 1.73e-39 154
MS.gene78420.t1 AT1G63100 31.871 342 214 9 367 701 248 577 5.45e-39 154
MS.gene78420.t1 AT1G63100 31.871 342 214 9 367 701 273 602 5.45e-39 154
MS.gene78420.t1 AT5G41920 27.559 381 251 7 366 740 38 399 5.89e-39 149
MS.gene78420.t1 AT3G49950 28.900 391 248 12 371 742 30 409 4.61e-36 141
MS.gene78420.t1 AT5G52510 25.773 388 258 10 369 740 266 639 1.18e-35 144
MS.gene78420.t1 AT4G37650 26.463 393 262 9 370 742 145 530 1.09e-33 136
MS.gene78420.t1 AT1G55580 27.187 423 239 12 368 740 41 444 9.64e-31 126
MS.gene78420.t1 AT4G08250 24.769 432 289 17 326 740 64 476 1.07e-24 108
MS.gene78420.t1 AT3G13840 23.934 422 275 14 330 740 112 498 4.89e-18 88.6
MS.gene78420.t1 AT4G00150 23.704 405 257 13 351 740 186 553 2.27e-15 80.5
MS.gene78420.t1 AT5G67411 30.846 201 125 8 488 677 1 198 1.44e-11 64.7

Find 173 sgRNAs with CRISPR-Local

Find 200 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACCCTTCACATTATTGATTT+TGG 0.112468 2.3:-5573187 MS.gene78420:CDS
CATCAAAGACAAAATCTTTA+TGG 0.121774 2.3:+5572477 None:intergenic
CCAGTTTCTGGTGGTGATTC+TGG 0.150366 2.3:-5574162 MS.gene78420:CDS
TCACCTGATACACCAGTTTC+TGG 0.198731 2.3:-5574174 MS.gene78420:CDS
TTGAATGGTTTCCCAGTTTC+GGG 0.204080 2.3:+5572964 None:intergenic
TTTGTTCAATCCATAGTAAA+TGG 0.225738 2.3:-5572797 MS.gene78420:CDS
TGTTGTGTTCCTACTGATTC+TGG 0.235374 2.3:-5574231 MS.gene78420:CDS
ATCTTCAAAGGTAGAATCTT+TGG 0.257325 2.3:+5574449 None:intergenic
CCTCATTGCTCTTAATATTA+AGG 0.263212 2.3:+5572933 None:intergenic
TTCAAGTTCAAATTTGAATT+CGG 0.265372 2.3:-5573824 MS.gene78420:CDS
TTTGAATGGTTTCCCAGTTT+CGG 0.285892 2.3:+5572963 None:intergenic
AGGCCATACCATCCCGAAAC+TGG 0.299357 2.3:-5572976 MS.gene78420:CDS
CAGCAGCACTAAACATCTTT+TGG 0.300712 2.3:+5573314 None:intergenic
AGGAAGCATTCTTCTCCTTC+AGG 0.315645 2.3:-5573430 MS.gene78420:CDS
TGCCGGTCGAAAGCCAGCTT+GGG 0.317241 2.3:+5573069 None:intergenic
CTCAAACTGAAACCATGATT+TGG 0.321027 2.3:+5574108 None:intergenic
TATCAAACATTGCAGAATAA+TGG 0.321158 2.3:+5572726 None:intergenic
ATTATAAGACCCATTTACTA+TGG 0.323109 2.3:+5572787 None:intergenic
AACTTCAGAACTGCATCTTT+AGG 0.332688 2.3:+5572845 None:intergenic
AAATCGTTAAGGTTTGGATT+TGG 0.332771 2.3:+5574537 None:intergenic
AGTGGCAGGTTAGGAATCTA+AGG 0.333559 2.3:-5572571 MS.gene78420:CDS
AATCTTCTTCCATTAGAATC+TGG 0.335576 2.3:+5574394 None:intergenic
CCACCAGAAACTGGTGTATC+AGG 0.337940 2.3:+5574171 None:intergenic
TCAAGTTCAAATTTGAATTC+GGG 0.339297 2.3:-5573823 MS.gene78420:CDS
TCAAGATGGAGGGTGGTGTT+AGG 0.341116 2.3:-5573867 MS.gene78420:CDS
GGAATCTAAGGGCTGGCTTT+AGG 0.342541 2.3:-5572559 MS.gene78420:CDS
GCAGTTTAGAAAAGGGTTAG+AGG 0.342843 2.3:-5573992 MS.gene78420:CDS
TTCTTCTGAGACTAGGGTTA+TGG 0.353283 2.3:-5574049 MS.gene78420:CDS
TGTGGATTTGAGGACCCTTT+TGG 0.355547 2.3:-5573518 MS.gene78420:CDS
CAGTTTATTGTTCCAAATCA+TGG 0.358564 2.3:-5574120 MS.gene78420:CDS
AAATATCTGATATGTTTGAT+AGG 0.361784 2.3:-5573675 MS.gene78420:CDS
TACGTATGCTTCGGCTGGTT+GGG 0.371904 2.3:-5572414 MS.gene78420:CDS
ATGAATTGTTGAGGCAGATT+AGG 0.382955 2.3:-5573450 MS.gene78420:CDS
CAGCCGAAGCATACGTAATT+CGG 0.384019 2.3:+5572420 None:intergenic
ACATCAAGAGGGTGTTGATT+AGG 0.390520 2.3:+5574276 None:intergenic
GTTTCGAATCCGACAAAGTT+CGG 0.391177 2.3:+5574606 None:intergenic
CATACAAACAGTGGCAGGTT+AGG 0.391689 2.3:-5572580 MS.gene78420:CDS
CTGCCGGTCGAAAGCCAGCT+TGG 0.397922 2.3:+5573068 None:intergenic
ATTAAGGTCTTCAATTTGAA+TGG 0.400958 2.3:+5572949 None:intergenic
TTACGTATGCTTCGGCTGGT+TGG 0.401437 2.3:-5572415 MS.gene78420:CDS
CAAGATGGAGGGTGGTGTTA+GGG 0.405701 2.3:-5573866 MS.gene78420:CDS
CAATGTTTCCTTCGAATACA+AGG 0.408276 2.3:-5572996 MS.gene78420:CDS
ATGGTGAAATCGTTAAGGTT+TGG 0.408700 2.3:+5574531 None:intergenic
ATGCAGTTCTGAAGTTAATC+AGG 0.410047 2.3:-5572838 MS.gene78420:CDS
GAATTGGATGGGCCCACATA+AGG 0.415523 2.3:+5574501 None:intergenic
CTGCCACTGTTTGTATGTCT+CGG 0.422026 2.3:+5572586 None:intergenic
CCAGAATCACCACCAGAAAC+TGG 0.422848 2.3:+5574162 None:intergenic
CTGTGTCTGCTAATGACAAT+AGG 0.426533 2.3:-5573480 MS.gene78420:CDS
ATTTGGATTCTTCTGAGACT+AGG 0.434021 2.3:-5574056 MS.gene78420:CDS
ATATATAAGCCAGATTCTAA+TGG 0.435212 2.3:-5574403 MS.gene78420:CDS
AGTTCAAATTCGAATTCAAA+TGG 0.435366 2.3:-5573793 MS.gene78420:CDS
TAATGGCCAGATTTAGAGAT+AGG 0.438554 2.3:-5572514 MS.gene78420:CDS
TAGGCAACTCCCACTGGATA+AGG 0.439045 2.3:-5572540 MS.gene78420:CDS
TTTGGATTCTTCTGAGACTA+GGG 0.441086 2.3:-5574055 MS.gene78420:CDS
CACCATGACCAACCCTTATG+TGG 0.441330 2.3:-5574514 MS.gene78420:CDS
ACTCAGGTTGGTGAGCTTGA+TGG 0.441788 2.3:-5573583 MS.gene78420:CDS
TCTTAGCCTATCTCTAAATC+TGG 0.445660 2.3:+5572508 None:intergenic
TTCCCAGTTTCGGGATGGTA+TGG 0.447770 2.3:+5572973 None:intergenic
CGCATGGTTGGTGCTGGTAC+CGG 0.452661 2.3:-5573358 MS.gene78420:CDS
TGGTCATGGTGAAATCGTTA+AGG 0.453510 2.3:+5574526 None:intergenic
AATTCCTGTGATCCTCAACT+TGG 0.460110 2.3:+5573099 None:intergenic
TTGTTCAATCCATAGTAAAT+GGG 0.464694 2.3:-5572796 MS.gene78420:CDS
TCTTTGATGAAGATAACAAC+TGG 0.466798 2.3:-5572463 MS.gene78420:CDS
TTTAGTGTCTCATGAGCCTA+AGG 0.471760 2.3:-5573905 MS.gene78420:CDS
TGGCTTTAGGCAACTCCCAC+TGG 0.476205 2.3:-5572546 MS.gene78420:CDS
ACCATGGTCATCGAATTTGT+AGG 0.476706 2.3:+5574581 None:intergenic
GCAGAGAGAATAGAGGAAAC+TGG 0.479525 2.3:-5573049 MS.gene78420:CDS
GATAACAACTGGATGCTTCA+AGG 0.480041 2.3:-5572452 MS.gene78420:CDS
TCATATCCCGTGAAAATGAA+TGG 0.481425 2.3:-5572691 MS.gene78420:CDS
AGAAGGAAACTGTGGATTTG+AGG 0.481509 2.3:-5573528 MS.gene78420:CDS
GCTATGGATCCGAACTTTGT+CGG 0.481965 2.3:-5574615 MS.gene78420:CDS
TGCCACTGTTTGTATGTCTC+GGG 0.483709 2.3:+5572587 None:intergenic
TTATGTGGGCCCATCCAATT+CGG 0.491734 2.3:-5574499 MS.gene78420:CDS
AATTGGATGGGCCCACATAA+GGG 0.496632 2.3:+5574502 None:intergenic
TGGCTGTGAACTGTTTGGTA+AGG 0.497180 2.3:-5572907 MS.gene78420:CDS
CCCACTGGATAAGGAGGTAA+TGG 0.498395 2.3:-5572531 MS.gene78420:CDS
CGAATTACGTATGCTTCGGC+TGG 0.503997 2.3:-5572419 MS.gene78420:CDS
TTGAAGCGTGTGGAAAAGAA+AGG 0.504187 2.3:+5572761 None:intergenic
AATATCTGATATGTTTGATA+GGG 0.504258 2.3:-5573674 MS.gene78420:CDS
GGAACACAACAATTGCTACT+AGG 0.506690 2.3:+5574243 None:intergenic
GGGTGTTGATTAGGTGAAAG+AGG 0.507344 2.3:+5574285 None:intergenic
TATTAAGAGCAATGAGGTAG+TGG 0.510345 2.3:-5572927 MS.gene78420:CDS
ACAACTGGATGCTTCAAGGT+TGG 0.515568 2.3:-5572448 MS.gene78420:CDS
GTTTCCTCTATTCTCTCTGC+CGG 0.517130 2.3:+5573052 None:intergenic
GTCTCATGAGCCTAAGGGTA+GGG 0.518003 2.3:-5573899 MS.gene78420:CDS
TCCCCAAGCTGGCTTTCGAC+CGG 0.518500 2.3:-5573071 MS.gene78420:CDS
CCATTACCTCCTTATCCAGT+GGG 0.519924 2.3:+5572531 None:intergenic
ACGAGTGGCTCCGAATTGGA+TGG 0.521140 2.3:+5574489 None:intergenic
GCCGCTGTGTGCTGAACAAA+AGG 0.522967 2.3:-5573629 MS.gene78420:CDS
AGGCCGAATTACGTATGCTT+CGG 0.526366 2.3:-5572423 MS.gene78420:CDS
CTCTGTGATGCATCACCTGA+AGG 0.529263 2.3:+5573415 None:intergenic
TCAGTAACATATCATTATGC+TGG 0.533464 2.3:+5572389 None:intergenic
AGGTGATGCATCACAGAGAA+TGG 0.535230 2.3:-5573410 MS.gene78420:CDS
TACCAAAATCAATAATGTGA+AGG 0.537288 2.3:+5573185 None:intergenic
GCGATTGAAGCGCGCATGGT+TGG 0.539201 2.3:-5573370 MS.gene78420:CDS
CATGAGCCTAAGGGTAGGGT+TGG 0.539617 2.3:-5573895 MS.gene78420:CDS
AAAGAAACAAGGGAGGAAGA+AGG 0.539726 2.3:-5573545 MS.gene78420:CDS
ACCAAAATCAATAATGTGAA+GGG 0.539883 2.3:+5573186 None:intergenic
TCAGTATGTTGAAGACTAAG+TGG 0.541144 2.3:+5574342 None:intergenic
GAAGCGCGCATGGTTGGTGC+TGG 0.541418 2.3:-5573364 MS.gene78420:CDS
GCCATTACCTCCTTATCCAG+TGG 0.541967 2.3:+5572530 None:intergenic
CCACCCAAGTTGAGGATCAC+AGG 0.542256 2.3:-5573103 MS.gene78420:CDS
CATATATAATATTTGTGTAC+CGG 0.543480 2.3:+5573339 None:intergenic
TAGGGTTGGAGTGATCAAGA+TGG 0.543815 2.3:-5573881 MS.gene78420:CDS
GGAATTGAGTATCCCCAAGC+TGG 0.546615 2.3:-5573082 MS.gene78420:CDS
GTATCTTATATGGTTTCCAG+TGG 0.547028 2.3:-5573165 MS.gene78420:CDS
GGTAGTGGCTGTGAACTGTT+TGG 0.549486 2.3:-5572912 MS.gene78420:CDS
AGTAATAGTAATATTAGTGA+TGG 0.551444 2.3:-5574087 MS.gene78420:CDS
GGTTGGAGTGATCAAGATGG+AGG 0.554472 2.3:-5573878 MS.gene78420:CDS
TGAAGCGTGTGGAAAAGAAA+GGG 0.554500 2.3:+5572762 None:intergenic
CTTGTGCACAAAGAACCAAA+AGG 0.555209 2.3:+5573503 None:intergenic
CGAGACATACAAACAGTGGC+AGG 0.561859 2.3:-5572585 MS.gene78420:CDS
ACCATGACCAACCCTTATGT+GGG 0.562138 2.3:-5574513 MS.gene78420:CDS
CAGGTTAGGAATCTAAGGGC+TGG 0.564666 2.3:-5572566 MS.gene78420:CDS
GGCCATACCATCCCGAAACT+GGG 0.564944 2.3:-5572975 MS.gene78420:CDS
ATTCCTGTGATCCTCAACTT+GGG 0.566789 2.3:+5573100 None:intergenic
TCGACCGGCAGAGAGAATAG+AGG 0.567756 2.3:-5573056 MS.gene78420:CDS
ACTGGTGTATCAGGTGAAAG+AGG 0.568315 2.3:+5574180 None:intergenic
ACTTAATAAGAATTGGCCAC+TGG 0.572363 2.3:+5573149 None:intergenic
CAAGAAAGTGACGATGAAGA+AGG 0.574577 2.3:-5573739 MS.gene78420:CDS
CTACAACATTCATAATCTCC+CGG 0.577244 2.3:+5572639 None:intergenic
ATGAATGTTGTAGCATGTGA+AGG 0.579064 2.3:-5572629 MS.gene78420:CDS
TTGTGCACAAAGAACCAAAA+GGG 0.580206 2.3:+5573504 None:intergenic
ATGGTTTCCCAGTTTCGGGA+TGG 0.581937 2.3:+5572968 None:intergenic
CTGTGTGCTGAACAAAAGGA+TGG 0.582319 2.3:-5573625 MS.gene78420:CDS
CAGGTTGGTGAGCTTGATGG+AGG 0.586798 2.3:-5573580 MS.gene78420:CDS
TTAGAGATAGGCTAAGAGAA+TGG 0.591729 2.3:-5572502 MS.gene78420:CDS
GGATGGGCCCACATAAGGGT+TGG 0.592672 2.3:+5574506 None:intergenic
CCTGTGATCCTCAACTTGGG+TGG 0.597902 2.3:+5573103 None:intergenic
TGGTGAGCTTGATGGAGGGA+AGG 0.598425 2.3:-5573575 MS.gene78420:CDS
GGAATCTCAAGAACATCAAG+AGG 0.598639 2.3:+5574264 None:intergenic
TGGATGCTTCAAGGTTGGAA+AGG 0.598660 2.3:-5572443 MS.gene78420:CDS
CGAGTGGCTCCGAATTGGAT+GGG 0.599028 2.3:+5574490 None:intergenic
GTTGGAGTGATCAAGATGGA+GGG 0.607035 2.3:-5573877 MS.gene78420:CDS
GAACTATTACCAGAATCAGT+AGG 0.607462 2.3:+5574222 None:intergenic
GGAGTGATCAAGATGGAGGG+TGG 0.608714 2.3:-5573874 MS.gene78420:CDS
AAGTGACTCCTTGAAGCGTG+TGG 0.608768 2.3:+5572751 None:intergenic
GAATGCGATTGAAGCGCGCA+TGG 0.609128 2.3:-5573374 MS.gene78420:CDS
TGTCTCATGAGCCTAAGGGT+AGG 0.616168 2.3:-5573900 MS.gene78420:CDS
CAGTATGTTGAAGACTAAGT+GGG 0.617757 2.3:+5574343 None:intergenic
GCCCACATAAGGGTTGGTCA+TGG 0.617923 2.3:+5574512 None:intergenic
TGGTATGGCCTTGTATTCGA+AGG 0.618500 2.3:+5572988 None:intergenic
AGATATTTCACTCTCCTCAA+CGG 0.618626 2.3:+5573690 None:intergenic
AGTGGTGGAAAGTAGAACTC+AGG 0.620773 2.3:-5573599 MS.gene78420:CDS
AAGGCACATACAAAGAAACA+AGG 0.622167 2.3:-5573556 MS.gene78420:CDS
GCCGGTCGAAAGCCAGCTTG+GGG 0.629257 2.3:+5573070 None:intergenic
GCAGTCTGCGGTTTCCGTTG+AGG 0.630810 2.3:-5573704 MS.gene78420:CDS
ACAAAAGGATGGATCAGTGG+TGG 0.631801 2.3:-5573614 MS.gene78420:CDS
AGGTTGGTGAGCTTGATGGA+GGG 0.634801 2.3:-5573579 MS.gene78420:CDS
AGAGAATAGAGGAAACTGGC+CGG 0.638860 2.3:-5573045 MS.gene78420:CDS
GCAACTCCCACTGGATAAGG+AGG 0.639677 2.3:-5572537 MS.gene78420:CDS
CACAATAGTTAGCTAAACGC+CGG 0.640868 2.3:+5573026 None:intergenic
ACCTACAAATTCGATGACCA+TGG 0.643298 2.3:-5574582 MS.gene78420:CDS
ATCACTCCAACCCTACCCTT+AGG 0.645813 2.3:+5573889 None:intergenic
TTAGTGTCTCATGAGCCTAA+GGG 0.648279 2.3:-5573904 MS.gene78420:CDS
GTGGCAGGTTAGGAATCTAA+GGG 0.650267 2.3:-5572570 MS.gene78420:CDS
AGAGAAGAATTAGATTACCA+TGG 0.658943 2.3:+5574565 None:intergenic
GGACTGCTAATGAATTGTTG+AGG 0.659007 2.3:-5573459 MS.gene78420:CDS
CCTGATACACCAGTTTCTGG+TGG 0.666329 2.3:-5574171 MS.gene78420:CDS
GTGGAAAGTAGAACTCAGGT+TGG 0.667091 2.3:-5573595 MS.gene78420:CDS
AGTGGGTCATAACACATGCA+TGG 0.667506 2.3:+5574360 None:intergenic
AGGGTGGACCACCCAAGTTG+AGG 0.670566 2.3:-5573111 MS.gene78420:CDS
GAAGCGTGTGGAAAAGAAAG+GGG 0.671904 2.3:+5572763 None:intergenic
GGCCCGAGACATACAAACAG+TGG 0.676458 2.3:-5572589 MS.gene78420:CDS
CCTTAATATTAAGAGCAATG+AGG 0.678676 2.3:-5572933 MS.gene78420:CDS
AAGAAGTAACAAGCAGTCTG+CGG 0.680051 2.3:-5573716 MS.gene78420:CDS
GAATCTCAAGAACATCAAGA+GGG 0.681038 2.3:+5574265 None:intergenic
CACATACAAAGAAACAAGGG+AGG 0.681274 2.3:-5573552 MS.gene78420:CDS
ATGGATTGAACAAATATGCG+CGG 0.684340 2.3:+5572806 None:intergenic
AGGGAGGAAGAAGGAAACTG+TGG 0.685784 2.3:-5573536 MS.gene78420:CDS
TGAACAAAAGGATGGATCAG+TGG 0.692488 2.3:-5573617 MS.gene78420:CDS
AGGCACATACAAAGAAACAA+GGG 0.704355 2.3:-5573555 MS.gene78420:CDS
TATCCCGTGAAAATGAATGG+AGG 0.724072 2.3:-5572688 MS.gene78420:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATATCTGATATGTTTGAT+AGG - chr2.3:5573340-5573359 MS.gene78420:CDS 20.0%
!! AATATCTGATATGTTTGATA+GGG - chr2.3:5573341-5573360 MS.gene78420:CDS 20.0%
!! AGTAATAGTAATATTAGTGA+TGG - chr2.3:5572928-5572947 MS.gene78420:CDS 20.0%
!! CATATATAATATTTGTGTAC+CGG + chr2.3:5573679-5573698 None:intergenic 20.0%
!! GACAAAAACTTAATAAGAAT+TGG + chr2.3:5573876-5573895 None:intergenic 20.0%
!!! AAATGTGCAAATTTTTTGAA+AGG + chr2.3:5573765-5573784 None:intergenic 20.0%
!!! AATGTGCAAATTTTTTGAAA+GGG + chr2.3:5573764-5573783 None:intergenic 20.0%
!!! ATTGATTTTGGTATCTTATA+TGG - chr2.3:5573840-5573859 MS.gene78420:CDS 20.0%
!!! TTCAAGTTCAAATTTGAATT+CGG - chr2.3:5573191-5573210 MS.gene78420:CDS 20.0%
! ACCAAAATCAATAATGTGAA+GGG + chr2.3:5573832-5573851 None:intergenic 25.0%
! AGTTCAAATTCGAATTCAAA+TGG - chr2.3:5573222-5573241 MS.gene78420:CDS 25.0%
! ATATATAAGCCAGATTCTAA+TGG - chr2.3:5572612-5572631 MS.gene78420:CDS 25.0%
! ATTAAGGTCTTCAATTTGAA+TGG + chr2.3:5574069-5574088 None:intergenic 25.0%
! ATTATAAGACCCATTTACTA+TGG + chr2.3:5574231-5574250 None:intergenic 25.0%
! CATCAAAGACAAAATCTTTA+TGG + chr2.3:5574541-5574560 None:intergenic 25.0%
! TACCAAAATCAATAATGTGA+AGG + chr2.3:5573833-5573852 None:intergenic 25.0%
! TATCAAACATTGCAGAATAA+TGG + chr2.3:5574292-5574311 None:intergenic 25.0%
! TCAAGTTCAAATTTGAATTC+GGG - chr2.3:5573192-5573211 MS.gene78420:CDS 25.0%
! TTGTTCAATCCATAGTAAAT+GGG - chr2.3:5574219-5574238 MS.gene78420:CDS 25.0%
! TTTGTTCAATCCATAGTAAA+TGG - chr2.3:5574218-5574237 MS.gene78420:CDS 25.0%
!! AAGTTTTTGTCAAAAGTAGA+GGG - chr2.3:5573885-5573904 MS.gene78420:CDS 25.0%
!! CTATTTTGCAGTTTAGAAAA+GGG - chr2.3:5573016-5573035 MS.gene78420:CDS 25.0%
!! GAAAATTTTCTTTGATGCTT+TGG - chr2.3:5572696-5572715 MS.gene78420:CDS 25.0%
!! TAAGTTTTTGTCAAAAGTAG+AGG - chr2.3:5573884-5573903 MS.gene78420:CDS 25.0%
!! TCTATTTTGCAGTTTAGAAA+AGG - chr2.3:5573015-5573034 MS.gene78420:CDS 25.0%
AAATCGTTAAGGTTTGGATT+TGG + chr2.3:5572481-5572500 None:intergenic 30.0%
AATCTTCTTCCATTAGAATC+TGG + chr2.3:5572624-5572643 None:intergenic 30.0%
AGAGAAGAATTAGATTACCA+TGG + chr2.3:5572453-5572472 None:intergenic 30.0%
ATCTTCAAAGGTAGAATCTT+TGG + chr2.3:5572569-5572588 None:intergenic 30.0%
CAGTTTATTGTTCCAAATCA+TGG - chr2.3:5572895-5572914 MS.gene78420:CDS 30.0%
CCTCATTGCTCTTAATATTA+AGG + chr2.3:5574085-5574104 None:intergenic 30.0%
CCTTAATATTAAGAGCAATG+AGG - chr2.3:5574082-5574101 MS.gene78420:CDS 30.0%
TCTTTGATGAAGATAACAAC+TGG - chr2.3:5574552-5574571 MS.gene78420:CDS 30.0%
TGAAAAATCAGCATCTTCAA+AGG + chr2.3:5572581-5572600 None:intergenic 30.0%
! ATGATTGAGAGAGAGTTTTT+GGG - chr2.3:5574353-5574372 MS.gene78420:CDS 30.0%
!! GATTTTGAAAACAGCTGAAA+AGG - chr2.3:5573800-5573819 MS.gene78420:CDS 30.0%
!! TAGTGATGGTGTTTTTGATT+TGG - chr2.3:5572942-5572961 MS.gene78420:CDS 30.0%
!!! ACCCTTCACATTATTGATTT+TGG - chr2.3:5573828-5573847 MS.gene78420:CDS 30.0%
AACTTCAGAACTGCATCTTT+AGG + chr2.3:5574173-5574192 None:intergenic 35.0%
AAGGCACATACAAAGAAACA+AGG - chr2.3:5573459-5573478 MS.gene78420:CDS 35.0%
ACTTAATAAGAATTGGCCAC+TGG + chr2.3:5573869-5573888 None:intergenic 35.0%
AGATATTTCACTCTCCTCAA+CGG + chr2.3:5573328-5573347 None:intergenic 35.0%
AGGCACATACAAAGAAACAA+GGG - chr2.3:5573460-5573479 MS.gene78420:CDS 35.0%
ATGAATGTTGTAGCATGTGA+AGG - chr2.3:5574386-5574405 MS.gene78420:CDS 35.0%
ATGAATTGTTGAGGCAGATT+AGG - chr2.3:5573565-5573584 MS.gene78420:CDS 35.0%
ATGGTGAAATCGTTAAGGTT+TGG + chr2.3:5572487-5572506 None:intergenic 35.0%
CAATGTTTCCTTCGAATACA+AGG - chr2.3:5574019-5574038 MS.gene78420:CDS 35.0%
CAGTATGTTGAAGACTAAGT+GGG + chr2.3:5572675-5572694 None:intergenic 35.0%
CTACAACATTCATAATCTCC+CGG + chr2.3:5574379-5574398 None:intergenic 35.0%
CTCAAACTGAAACCATGATT+TGG + chr2.3:5572910-5572929 None:intergenic 35.0%
GAACTATTACCAGAATCAGT+AGG + chr2.3:5572796-5572815 None:intergenic 35.0%
GAATCTCAAGAACATCAAGA+GGG + chr2.3:5572753-5572772 None:intergenic 35.0%
GTATCTTATATGGTTTCCAG+TGG - chr2.3:5573850-5573869 MS.gene78420:CDS 35.0%
TAATGGCCAGATTTAGAGAT+AGG - chr2.3:5574501-5574520 MS.gene78420:CDS 35.0%
TATTAAGAGCAATGAGGTAG+TGG - chr2.3:5574088-5574107 MS.gene78420:CDS 35.0%
TCAGTATGTTGAAGACTAAG+TGG + chr2.3:5572676-5572695 None:intergenic 35.0%
TCATATCCCGTGAAAATGAA+TGG - chr2.3:5574324-5574343 MS.gene78420:CDS 35.0%
TCTTAGCCTATCTCTAAATC+TGG + chr2.3:5574510-5574529 None:intergenic 35.0%
TTAGAGATAGGCTAAGAGAA+TGG - chr2.3:5574513-5574532 MS.gene78420:CDS 35.0%
TTGTGCACAAAGAACCAAAA+GGG + chr2.3:5573514-5573533 None:intergenic 35.0%
TTTGAATGGTTTCCCAGTTT+CGG + chr2.3:5574055-5574074 None:intergenic 35.0%
! ATGGATTGAACAAATATGCG+CGG + chr2.3:5574212-5574231 None:intergenic 35.0%
! CAAAAAGCTCAGCTTTTTAC+TGG - chr2.3:5573066-5573085 MS.gene78420:CDS 35.0%
! GATGATTGAGAGAGAGTTTT+TGG - chr2.3:5574352-5574371 MS.gene78420:CDS 35.0%
! GTAAAAAGCTGAGCTTTTTG+AGG + chr2.3:5573066-5573085 None:intergenic 35.0%
! TTTTTGTCAAAAGTAGAGGG+TGG - chr2.3:5573888-5573907 MS.gene78420:CDS 35.0%
!! ATGCAGTTCTGAAGTTAATC+AGG - chr2.3:5574177-5574196 MS.gene78420:CDS 35.0%
!! ATTTGGATTCTTCTGAGACT+AGG - chr2.3:5572959-5572978 MS.gene78420:CDS 35.0%
!! TTTGGATTCTTCTGAGACTA+GGG - chr2.3:5572960-5572979 MS.gene78420:CDS 35.0%
AAAGAAACAAGGGAGGAAGA+AGG - chr2.3:5573470-5573489 MS.gene78420:CDS 40.0%
AAGAAGTAACAAGCAGTCTG+CGG - chr2.3:5573299-5573318 MS.gene78420:CDS 40.0%
AATTCCTGTGATCCTCAACT+TGG + chr2.3:5573919-5573938 None:intergenic 40.0%
ACCATGGTCATCGAATTTGT+AGG + chr2.3:5572437-5572456 None:intergenic 40.0%
ACCTACAAATTCGATGACCA+TGG - chr2.3:5572433-5572452 MS.gene78420:CDS 40.0%
AGAAGGAAACTGTGGATTTG+AGG - chr2.3:5573487-5573506 MS.gene78420:CDS 40.0%
ATTCCTGTGATCCTCAACTT+GGG + chr2.3:5573918-5573937 None:intergenic 40.0%
CAAGAAAGTGACGATGAAGA+AGG - chr2.3:5573276-5573295 MS.gene78420:CDS 40.0%
CACAATAGTTAGCTAAACGC+CGG + chr2.3:5573992-5574011 None:intergenic 40.0%
CACATACAAAGAAACAAGGG+AGG - chr2.3:5573463-5573482 MS.gene78420:CDS 40.0%
CTGTGTCTGCTAATGACAAT+AGG - chr2.3:5573535-5573554 MS.gene78420:CDS 40.0%
CTTGTGCACAAAGAACCAAA+AGG + chr2.3:5573515-5573534 None:intergenic 40.0%
GATAACAACTGGATGCTTCA+AGG - chr2.3:5574563-5574582 MS.gene78420:CDS 40.0%
GCAGTTTAGAAAAGGGTTAG+AGG - chr2.3:5573023-5573042 MS.gene78420:CDS 40.0%
GCATCAGAAGAAAAAACGAG+TGG + chr2.3:5572544-5572563 None:intergenic 40.0%
GGAACACAACAATTGCTACT+AGG + chr2.3:5572775-5572794 None:intergenic 40.0%
GGAATCTCAAGAACATCAAG+AGG + chr2.3:5572754-5572773 None:intergenic 40.0%
GGACTGCTAATGAATTGTTG+AGG - chr2.3:5573556-5573575 MS.gene78420:CDS 40.0%
GGCAAGCAGAGATAAAAACT+TGG + chr2.3:5573743-5573762 None:intergenic 40.0%
GTTTCGAATCCGACAAAGTT+CGG + chr2.3:5572412-5572431 None:intergenic 40.0%
TATCCCGTGAAAATGAATGG+AGG - chr2.3:5574327-5574346 MS.gene78420:CDS 40.0%
TGAACAAAAGGATGGATCAG+TGG - chr2.3:5573398-5573417 MS.gene78420:CDS 40.0%
TGAAGCGTGTGGAAAAGAAA+GGG + chr2.3:5574256-5574275 None:intergenic 40.0%
TGGTCATGGTGAAATCGTTA+AGG + chr2.3:5572492-5572511 None:intergenic 40.0%
TTAGTGTCTCATGAGCCTAA+GGG - chr2.3:5573111-5573130 MS.gene78420:CDS 40.0%
TTGAAGCGTGTGGAAAAGAA+AGG + chr2.3:5574257-5574276 None:intergenic 40.0%
TTGAATGGTTTCCCAGTTTC+GGG + chr2.3:5574054-5574073 None:intergenic 40.0%
TTTAGTGTCTCATGAGCCTA+AGG - chr2.3:5573110-5573129 MS.gene78420:CDS 40.0%
! CAGCAGCACTAAACATCTTT+TGG + chr2.3:5573704-5573723 None:intergenic 40.0%
! TCGACCTCCATTCATTTTCA+CGG + chr2.3:5574334-5574353 None:intergenic 40.0%
! TTTCTTTTCCACACGCTTCA+AGG - chr2.3:5574256-5574275 MS.gene78420:CDS 40.0%
!! ACATCAAGAGGGTGTTGATT+AGG + chr2.3:5572742-5572761 None:intergenic 40.0%
!! TGTTGTGTTCCTACTGATTC+TGG - chr2.3:5572784-5572803 MS.gene78420:CDS 40.0%
!! TTCTTCTGAGACTAGGGTTA+TGG - chr2.3:5572966-5572985 MS.gene78420:CDS 40.0%
!!! AGCATGTGAAGGTTTTGAGA+GGG - chr2.3:5574397-5574416 MS.gene78420:CDS 40.0%
!!! TAGCATGTGAAGGTTTTGAG+AGG - chr2.3:5574396-5574415 MS.gene78420:CDS 40.0%
AAAAACGAGTGGCTCCGAAT+TGG + chr2.3:5572533-5572552 None:intergenic 45.0%
AATTGGATGGGCCCACATAA+GGG + chr2.3:5572516-5572535 None:intergenic 45.0%
ACAAAAGGATGGATCAGTGG+TGG - chr2.3:5573401-5573420 MS.gene78420:CDS 45.0%
ACAACTGGATGCTTCAAGGT+TGG - chr2.3:5574567-5574586 MS.gene78420:CDS 45.0%
ACCATGACCAACCCTTATGT+GGG - chr2.3:5572502-5572521 MS.gene78420:CDS 45.0%
ACTGGTGTATCAGGTGAAAG+AGG + chr2.3:5572838-5572857 None:intergenic 45.0%
AGAGAATAGAGGAAACTGGC+CGG - chr2.3:5573970-5573989 MS.gene78420:CDS 45.0%
AGGCCGAATTACGTATGCTT+CGG - chr2.3:5574592-5574611 MS.gene78420:CDS 45.0%
AGGTGATGCATCACAGAGAA+TGG - chr2.3:5573605-5573624 MS.gene78420:CDS 45.0%
AGTGGCAGGTTAGGAATCTA+AGG - chr2.3:5574444-5574463 MS.gene78420:CDS 45.0%
AGTGGGTCATAACACATGCA+TGG + chr2.3:5572658-5572677 None:intergenic 45.0%
CAGCCGAAGCATACGTAATT+CGG + chr2.3:5574598-5574617 None:intergenic 45.0%
CATACAAACAGTGGCAGGTT+AGG - chr2.3:5574435-5574454 MS.gene78420:CDS 45.0%
CCATTACCTCCTTATCCAGT+GGG + chr2.3:5574487-5574506 None:intergenic 45.0%
CTGCCACTGTTTGTATGTCT+CGG + chr2.3:5574432-5574451 None:intergenic 45.0%
CTGTGTGCTGAACAAAAGGA+TGG - chr2.3:5573390-5573409 MS.gene78420:CDS 45.0%
GAAGCGTGTGGAAAAGAAAG+GGG + chr2.3:5574255-5574274 None:intergenic 45.0%
GCAGAGAGAATAGAGGAAAC+TGG - chr2.3:5573966-5573985 MS.gene78420:CDS 45.0%
GTGGAAAGTAGAACTCAGGT+TGG - chr2.3:5573420-5573439 MS.gene78420:CDS 45.0%
GTGGCAGGTTAGGAATCTAA+GGG - chr2.3:5574445-5574464 MS.gene78420:CDS 45.0%
GTTGGAGTGATCAAGATGGA+GGG - chr2.3:5573138-5573157 MS.gene78420:CDS 45.0%
GTTTCCTCTATTCTCTCTGC+CGG + chr2.3:5573966-5573985 None:intergenic 45.0%
TAGGGTTGGAGTGATCAAGA+TGG - chr2.3:5573134-5573153 MS.gene78420:CDS 45.0%
TCACCTGATACACCAGTTTC+TGG - chr2.3:5572841-5572860 MS.gene78420:CDS 45.0%
TGCCACTGTTTGTATGTCTC+GGG + chr2.3:5574431-5574450 None:intergenic 45.0%
TGGATGCTTCAAGGTTGGAA+AGG - chr2.3:5574572-5574591 MS.gene78420:CDS 45.0%
TGGCTGTGAACTGTTTGGTA+AGG - chr2.3:5574108-5574127 MS.gene78420:CDS 45.0%
TTATGTGGGCCCATCCAATT+CGG - chr2.3:5572516-5572535 MS.gene78420:CDS 45.0%
! AGTGGTGGAAAGTAGAACTC+AGG - chr2.3:5573416-5573435 MS.gene78420:CDS 45.0%
! CGACCTCCATTCATTTTCAC+GGG + chr2.3:5574333-5574352 None:intergenic 45.0%
! TCCTTTTGTTCAGCACACAG+CGG + chr2.3:5573390-5573409 None:intergenic 45.0%
! TGTGGATTTGAGGACCCTTT+TGG - chr2.3:5573497-5573516 MS.gene78420:CDS 45.0%
!! AGGAAGCATTCTTCTCCTTC+AGG - chr2.3:5573585-5573604 MS.gene78420:CDS 45.0%
!! GGGTGTTGATTAGGTGAAAG+AGG + chr2.3:5572733-5572752 None:intergenic 45.0%
!! TGGTATGGCCTTGTATTCGA+AGG + chr2.3:5574030-5574049 None:intergenic 45.0%
!! TTGAGAGAGAGTTTTTGGGC+CGG - chr2.3:5574357-5574376 MS.gene78420:CDS 45.0%
!!! AAGGTTTTGAGAGGGTTGAG+AGG - chr2.3:5574405-5574424 MS.gene78420:CDS 45.0%
AAGTGACTCCTTGAAGCGTG+TGG + chr2.3:5574267-5574286 None:intergenic 50.0%
AGGGAGGAAGAAGGAAACTG+TGG - chr2.3:5573479-5573498 MS.gene78420:CDS 50.0%
ATCACTCCAACCCTACCCTT+AGG + chr2.3:5573129-5573148 None:intergenic 50.0%
ATGGTTTCCCAGTTTCGGGA+TGG + chr2.3:5574050-5574069 None:intergenic 50.0%
CACCATGACCAACCCTTATG+TGG - chr2.3:5572501-5572520 MS.gene78420:CDS 50.0%
CAGGTTAGGAATCTAAGGGC+TGG - chr2.3:5574449-5574468 MS.gene78420:CDS 50.0%
CCACCAGAAACTGGTGTATC+AGG + chr2.3:5572847-5572866 None:intergenic 50.0%
CCAGAATCACCACCAGAAAC+TGG + chr2.3:5572856-5572875 None:intergenic 50.0%
CCCACTGGATAAGGAGGTAA+TGG - chr2.3:5574484-5574503 MS.gene78420:CDS 50.0%
CGAATTACGTATGCTTCGGC+TGG - chr2.3:5574596-5574615 MS.gene78420:CDS 50.0%
CGAGACATACAAACAGTGGC+AGG - chr2.3:5574430-5574449 MS.gene78420:CDS 50.0%
CTCTGTGATGCATCACCTGA+AGG + chr2.3:5573603-5573622 None:intergenic 50.0%
GAATTGGATGGGCCCACATA+AGG + chr2.3:5572517-5572536 None:intergenic 50.0%
GCCATTACCTCCTTATCCAG+TGG + chr2.3:5574488-5574507 None:intergenic 50.0%
GGAATTGAGTATCCCCAAGC+TGG - chr2.3:5573933-5573952 MS.gene78420:CDS 50.0%
GGTTGGAGTGATCAAGATGG+AGG - chr2.3:5573137-5573156 MS.gene78420:CDS 50.0%
GTCTCATGAGCCTAAGGGTA+GGG - chr2.3:5573116-5573135 MS.gene78420:CDS 50.0%
TAGGCAACTCCCACTGGATA+AGG - chr2.3:5574475-5574494 MS.gene78420:CDS 50.0%
TCAAGATGGAGGGTGGTGTT+AGG - chr2.3:5573148-5573167 MS.gene78420:CDS 50.0%
TGTCTCATGAGCCTAAGGGT+AGG - chr2.3:5573115-5573134 MS.gene78420:CDS 50.0%
TTACGTATGCTTCGGCTGGT+TGG - chr2.3:5574600-5574619 MS.gene78420:CDS 50.0%
TTCCCAGTTTCGGGATGGTA+TGG + chr2.3:5574045-5574064 None:intergenic 50.0%
! CAAGATGGAGGGTGGTGTTA+GGG - chr2.3:5573149-5573168 MS.gene78420:CDS 50.0%
! CCTGATACACCAGTTTCTGG+TGG - chr2.3:5572844-5572863 MS.gene78420:CDS 50.0%
! GGTAGTGGCTGTGAACTGTT+TGG - chr2.3:5574103-5574122 MS.gene78420:CDS 50.0%
! TACGTATGCTTCGGCTGGTT+GGG - chr2.3:5574601-5574620 MS.gene78420:CDS 50.0%
!! ACTCAGGTTGGTGAGCTTGA+TGG - chr2.3:5573432-5573451 MS.gene78420:CDS 50.0%
!! AGGTTGGTGAGCTTGATGGA+GGG - chr2.3:5573436-5573455 MS.gene78420:CDS 50.0%
!! CCAGTTTCTGGTGGTGATTC+TGG - chr2.3:5572853-5572872 MS.gene78420:CDS 50.0%
!! GGAATCTAAGGGCTGGCTTT+AGG - chr2.3:5574456-5574475 MS.gene78420:CDS 50.0%
!! TGAGAGAGAGTTTTTGGGCC+GGG - chr2.3:5574358-5574377 MS.gene78420:CDS 50.0%
ACGAGTGGCTCCGAATTGGA+TGG + chr2.3:5572529-5572548 None:intergenic 55.0%
AGGCCATACCATCCCGAAAC+TGG - chr2.3:5574039-5574058 MS.gene78420:CDS 55.0%
CATGAGCCTAAGGGTAGGGT+TGG - chr2.3:5573120-5573139 MS.gene78420:CDS 55.0%
CCTGTGATCCTCAACTTGGG+TGG + chr2.3:5573915-5573934 None:intergenic 55.0%
CGAGTGGCTCCGAATTGGAT+GGG + chr2.3:5572528-5572547 None:intergenic 55.0%
GAATGCGATTGAAGCGCGCA+TGG - chr2.3:5573641-5573660 MS.gene78420:CDS 55.0%
GCAACTCCCACTGGATAAGG+AGG - chr2.3:5574478-5574497 MS.gene78420:CDS 55.0%
GCCGCTGTGTGCTGAACAAA+AGG - chr2.3:5573386-5573405 MS.gene78420:CDS 55.0%
GGAGTGATCAAGATGGAGGG+TGG - chr2.3:5573141-5573160 MS.gene78420:CDS 55.0%
GGCCATACCATCCCGAAACT+GGG - chr2.3:5574040-5574059 MS.gene78420:CDS 55.0%
GGCCCGAGACATACAAACAG+TGG - chr2.3:5574426-5574445 MS.gene78420:CDS 55.0%
TCGACCGGCAGAGAGAATAG+AGG - chr2.3:5573959-5573978 MS.gene78420:CDS 55.0%
TGGTGAGCTTGATGGAGGGA+AGG - chr2.3:5573440-5573459 MS.gene78420:CDS 55.0%
! CCACCCAAGTTGAGGATCAC+AGG - chr2.3:5573912-5573931 MS.gene78420:CDS 55.0%
!! CAGGTTGGTGAGCTTGATGG+AGG - chr2.3:5573435-5573454 MS.gene78420:CDS 55.0%
!! GCCCACATAAGGGTTGGTCA+TGG + chr2.3:5572506-5572525 None:intergenic 55.0%
!! TGGCTTTAGGCAACTCCCAC+TGG - chr2.3:5574469-5574488 MS.gene78420:CDS 55.0%
AGGGTGGACCACCCAAGTTG+AGG - chr2.3:5573904-5573923 MS.gene78420:CDS 60.0%
GCAGTCTGCGGTTTCCGTTG+AGG - chr2.3:5573311-5573330 MS.gene78420:CDS 60.0%
GCGATTGAAGCGCGCATGGT+TGG - chr2.3:5573645-5573664 MS.gene78420:CDS 60.0%
GGATGGGCCCACATAAGGGT+TGG + chr2.3:5572512-5572531 None:intergenic 60.0%
TGCCGGTCGAAAGCCAGCTT+GGG + chr2.3:5573949-5573968 None:intergenic 60.0%
!! CGCATGGTTGGTGCTGGTAC+CGG - chr2.3:5573657-5573676 MS.gene78420:CDS 60.0%
!! TCCCCAAGCTGGCTTTCGAC+CGG - chr2.3:5573944-5573963 MS.gene78420:CDS 60.0%
CTGCCGGTCGAAAGCCAGCT+TGG + chr2.3:5573950-5573969 None:intergenic 65.0%
GCCGGTCGAAAGCCAGCTTG+GGG + chr2.3:5573948-5573967 None:intergenic 65.0%
! GAAGCGCGCATGGTTGGTGC+TGG - chr2.3:5573651-5573670 MS.gene78420:CDS 65.0%


Chromosome Type Strat End Strand Name
chr2.3 gene 5572403 5574634 5572403 ID=MS.gene78420
chr2.3 mRNA 5572403 5574634 5572403 ID=MS.gene78420.t1;Parent=MS.gene78420
chr2.3 exon 5572403 5574634 5572403 ID=MS.gene78420.t1.exon1;Parent=MS.gene78420.t1
chr2.3 CDS 5572403 5574634 5572403 ID=cds.MS.gene78420.t1;Parent=MS.gene78420.t1
Gene Sequence

>MS.gene78420

ATGGATCCGAACTTTGTCGGATTCGAAACAACCTACAAATTCGATGACCATGGTAATCTAATTCTTCTCTCTGATCCAAATCCAAACCTTAACGATTTCACCATGACCAACCCTTATGTGGGCCCATCCAATTCGGAGCCACTCGTTTTTTCTTCTGATGCAACCAAAGATTCTACCTTTGAAGATGCTGATTTTTCAGAAACTGTGAAATATATAAGCCAGATTCTAATGGAAGAAGATTTTGAACAAAAACCATGCATGTGTTATGACCCACTTAGTCTTCAACATACTGAGAAAATTTTCTTTGATGCTTTGGAATCAAATTTGCCTCTTTCACCTAATCAACACCCTCTTGATGTTCTTGAGATTCCTAGTAGCAATTGTTGTGTTCCTACTGATTCTGGTAATAGTTCTAGTTCTAATGAGTTAAAGCCTCTTTCACCTGATACACCAGTTTCTGGTGGTGATTCTGGTTTTAATTCAGTGAAGTCTCAGTTTATTGTTCCAAATCATGGTTTCAGTTTGAGTAATAGTAATATTAGTGATGGTGTTTTTGATTTGGATTCTTCTGAGACTAGGGTTATGGCTCAGAATATTTTTAGTGATGCTGATTCTATTTTGCAGTTTAGAAAAGGGTTAGAGGAAGCTAGCAAGTTTCTTCCTCAAAAAGCTCAGCTTTTTACTGGTTTTGAGAATGCTAGTGATAGTTTAGTGTCTCATGAGCCTAAGGGTAGGGTTGGAGTGATCAAGATGGAGGGTGGTGTTAGGGAGAACTCGAATTCGAGTTATTCAAGTTCAAATTTGAATTCGGGTTATTCGAGTTCAAATTCGAATTCAAATGGTTTGTTGAAGAGTAGAAAGAATCACGAGCGTCAAGAAAGTGACGATGAAGAAGGAAGAAGTAACAAGCAGTCTGCGGTTTCCGTTGAGGAGAGTGAAATATCTGATATGTTTGATAGGGTTTTGCTTAGTGTTGAAAACGTGCCGCTGTGTGCTGAACAAAAGGATGGATCAGTGGTGGAAAGTAGAACTCAGGTTGGTGAGCTTGATGGAGGGAAGGCACATACAAAGAAACAAGGGAGGAAGAAGGAAACTGTGGATTTGAGGACCCTTTTGGTTCTTTGTGCACAAGCTGTGTCTGCTAATGACAATAGGACTGCTAATGAATTGTTGAGGCAGATTAGGAAGCATTCTTCTCCTTCAGGTGATGCATCACAGAGAATGGCTCATTACTTTGCGAATGCGATTGAAGCGCGCATGGTTGGTGCTGGTACCGGTACACAAATATTATATATGAGCCAAAAGATGTTTAGTGCTGCTGATTTCTTGAAAGCTTACCAAGTTTTTATCTCTGCTTGCCCTTTCAAAAAATTTGCACATTTCTTTGCAAATAAAATGATTTTGAAAACAGCTGAAAAGGCAGAAACCCTTCACATTATTGATTTTGGTATCTTATATGGTTTCCAGTGGCCAATTCTTATTAAGTTTTTGTCAAAAGTAGAGGGTGGACCACCCAAGTTGAGGATCACAGGAATTGAGTATCCCCAAGCTGGCTTTCGACCGGCAGAGAGAATAGAGGAAACTGGCCGGCGTTTAGCTAACTATTGTGAACGTTTCAATGTTTCCTTCGAATACAAGGCCATACCATCCCGAAACTGGGAAACCATTCAAATTGAAGACCTTAATATTAAGAGCAATGAGGTAGTGGCTGTGAACTGTTTGGTAAGGTTTAAGAATTTACATGATGAGACAATCGACGTGAACAGTCCTAAAGATGCAGTTCTGAAGTTAATCAGGAAGATAAATCCGCGCATATTTGTTCAATCCATAGTAAATGGGTCTTATAATGCCCCTTTCTTTTCCACACGCTTCAAGGAGTCACTTTTCCATTATTCTGCAATGTTTGATATGTATGATACTCTCATATCCCGTGAAAATGAATGGAGGTCGATGATTGAGAGAGAGTTTTTGGGCCGGGAGATTATGAATGTTGTAGCATGTGAAGGTTTTGAGAGGGTTGAGAGGCCCGAGACATACAAACAGTGGCAGGTTAGGAATCTAAGGGCTGGCTTTAGGCAACTCCCACTGGATAAGGAGGTAATGGCCAGATTTAGAGATAGGCTAAGAGAATGGTACCATAAAGATTTTGTCTTTGATGAAGATAACAACTGGATGCTTCAAGGTTGGAAAGGCCGAATTACGTATGCTTCGGCTGGTTGGGTGCCAGCATAA
Protein sequence

>MS.gene78420.t1

MDPNFVGFETTYKFDDHGNLILLSDPNPNLNDFTMTNPYVGPSNSEPLVFSSDATKDSTFEDADFSETVKYISQILMEEDFEQKPCMCYDPLSLQHTEKIFFDALESNLPLSPNQHPLDVLEIPSSNCCVPTDSGNSSSSNELKPLSPDTPVSGGDSGFNSVKSQFIVPNHGFSLSNSNISDGVFDLDSSETRVMAQNIFSDADSILQFRKGLEEASKFLPQKAQLFTGFENASDSLVSHEPKGRVGVIKMEGGVRENSNSSYSSSNLNSGYSSSNSNSNGLLKSRKNHERQESDDEEGRSNKQSAVSVEESEISDMFDRVLLSVENVPLCAEQKDGSVVESRTQVGELDGGKAHTKKQGRKKETVDLRTLLVLCAQAVSANDNRTANELLRQIRKHSSPSGDASQRMAHYFANAIEARMVGAGTGTQILYMSQKMFSAADFLKAYQVFISACPFKKFAHFFANKMILKTAEKAETLHIIDFGILYGFQWPILIKFLSKVEGGPPKLRITGIEYPQAGFRPAERIEETGRRLANYCERFNVSFEYKAIPSRNWETIQIEDLNIKSNEVVAVNCLVRFKNLHDETIDVNSPKDAVLKLIRKINPRIFVQSIVNGSYNAPFFSTRFKESLFHYSAMFDMYDTLISRENEWRSMIEREFLGREIMNVVACEGFERVERPETYKQWQVRNLRAGFRQLPLDKEVMARFRDRLREWYHKDFVFDEDNNWMLQGWKGRITYASAGWVPA