AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene052092

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene052092.t1 MTR_2g097410 96.635 743 25 0 1 743 1 743 0.0 1501
MS.gene052092.t1 MTR_4g064150 57.823 735 251 12 21 743 48 735 0.0 804
MS.gene052092.t1 MTR_4g064120 56.897 696 206 10 54 743 21 628 0.0 764
MS.gene052092.t1 MTR_4g064180 56.466 696 209 10 54 743 21 628 0.0 752
MS.gene052092.t1 MTR_4g064160 48.892 722 313 17 35 743 8 686 0.0 625
MS.gene052092.t1 MTR_7g062120 44.585 711 330 17 61 743 68 742 0.0 566
MS.gene052092.t1 MTR_4g064200 52.677 467 192 6 294 743 198 652 5.59e-167 496
MS.gene052092.t1 MTR_2g097467 52.328 451 205 4 295 743 214 656 4.36e-165 491
MS.gene052092.t1 MTR_2g097463 50.531 471 209 5 284 743 200 657 5.01e-163 486
MS.gene052092.t1 MTR_2g097473 50.855 468 209 5 284 743 202 656 1.81e-162 484
MS.gene052092.t1 MTR_2g097310 52.516 457 200 8 291 743 197 640 3.23e-159 476
MS.gene052092.t1 MTR_2g097350 51.902 447 197 9 302 743 209 642 4.65e-154 462
MS.gene052092.t1 MTR_2g097390 51.454 447 199 9 302 743 210 643 2.21e-153 461
MS.gene052092.t1 MTR_2g097380 47.936 436 170 8 310 743 183 563 6.10e-133 405
MS.gene052092.t1 MTR_2g082090 32.979 376 245 4 367 740 208 578 7.01e-67 231
MS.gene052092.t1 MTR_3g056110 32.021 381 242 8 367 740 171 541 1.23e-60 214
MS.gene052092.t1 MTR_4g133660 30.607 379 255 5 366 741 170 543 1.46e-60 213
MS.gene052092.t1 MTR_5g094450 33.505 388 231 10 367 740 157 531 5.53e-60 211
MS.gene052092.t1 MTR_5g097480 30.851 376 253 4 367 740 173 543 1.21e-59 211
MS.gene052092.t1 MTR_7g027190 31.472 394 235 6 366 740 295 672 3.99e-56 204
MS.gene052092.t1 MTR_1g029420 29.679 374 256 4 369 740 223 591 1.22e-54 198
MS.gene052092.t1 MTR_2g026250 28.059 474 312 9 272 740 146 595 1.85e-54 198
MS.gene052092.t1 MTR_3g089055 30.851 376 249 7 369 740 201 569 2.72e-54 197
MS.gene052092.t1 MTR_3g089055 30.851 376 249 7 369 740 196 564 3.55e-54 196
MS.gene052092.t1 MTR_7g074650 31.793 368 235 6 375 742 442 793 2.83e-52 195
MS.gene052092.t1 MTR_8g442410 32.642 386 238 8 366 740 150 524 1.38e-50 186
MS.gene052092.t1 MTR_3g065980 31.218 394 231 6 366 740 167 539 2.68e-50 185
MS.gene052092.t1 MTR_4g104020 29.950 404 246 10 356 740 134 519 4.14e-50 184
MS.gene052092.t1 MTR_3g022830 26.555 418 250 6 372 740 26 435 3.71e-44 165
MS.gene052092.t1 MTR_4g102790 29.199 387 252 10 367 742 288 663 2.88e-43 167
MS.gene052092.t1 MTR_4g076140 26.402 428 250 5 371 740 48 468 3.33e-43 163
MS.gene052092.t1 MTR_4g076020 27.851 377 231 7 375 743 88 431 3.21e-42 159
MS.gene052092.t1 MTR_1g069725 27.518 407 264 12 343 741 80 463 3.36e-41 157
MS.gene052092.t1 MTR_4g097080 29.474 380 256 7 369 742 131 504 1.72e-40 156
MS.gene052092.t1 MTR_2g089100 26.290 407 259 9 368 743 49 445 3.39e-38 148
MS.gene052092.t1 MTR_2g034260 28.030 396 255 11 362 740 201 583 1.79e-36 145
MS.gene052092.t1 MTR_2g034250 28.354 395 256 8 362 740 201 584 3.52e-36 144
MS.gene052092.t1 MTR_4g077760 26.509 381 255 10 368 740 191 554 1.43e-35 142
MS.gene052092.t1 MTR_5g015490 28.125 384 258 7 371 742 114 491 4.30e-34 137
MS.gene052092.t1 MTR_8g065750 83.824 68 11 0 27 94 38 105 2.34e-32 121
MS.gene052092.t1 MTR_5g058860 26.253 419 271 12 346 741 94 497 6.93e-32 130
MS.gene052092.t1 MTR_2g034280 26.020 392 266 7 362 740 194 574 1.19e-31 131
MS.gene052092.t1 MTR_1g096030 27.456 397 243 14 371 740 80 458 1.55e-30 126
MS.gene052092.t1 MTR_3g072710 26.024 415 259 13 356 741 105 500 1.85e-30 126
MS.gene052092.t1 MTR_7g109580 28.093 388 248 11 366 740 184 553 2.80e-30 126
MS.gene052092.t1 MTR_6g047750 26.963 382 250 12 372 740 296 661 1.27e-29 125
MS.gene052092.t1 MTR_7g057230 25.867 375 259 8 372 740 295 656 2.29e-29 124
MS.gene052092.t1 MTR_5g015950 21.934 424 276 8 368 743 32 448 6.76e-27 115
MS.gene052092.t1 MTR_3g053270 21.934 424 276 8 368 743 32 448 6.76e-27 115
MS.gene052092.t1 MTR_4g095500 22.803 421 274 9 368 743 56 470 9.13e-27 115
MS.gene052092.t1 MTR_1g086970 25.505 396 255 13 366 740 101 477 3.37e-26 113
MS.gene052092.t1 MTR_5g009080 29.048 210 142 2 371 580 56 258 6.43e-26 112
MS.gene052092.t1 MTR_5g009080 28.188 149 107 0 592 740 329 477 2.13e-17 86.3
MS.gene052092.t1 MTR_3g087300 83.929 56 9 0 335 390 153 208 6.55e-24 100
MS.gene052092.t1 MTR_2g099110 26.733 303 204 6 371 667 74 364 1.01e-23 105
MS.gene052092.t1 MTR_8g093070 24.121 398 263 16 359 743 127 498 1.81e-22 102
MS.gene052092.t1 MTR_8g020840 24.365 394 242 14 358 727 163 524 3.85e-17 85.9
MS.gene052092.t1 MTR_0092s0100 23.016 378 259 8 372 740 376 730 1.06e-16 85.1
MS.gene052092.t1 MTR_0092s0100 23.016 378 259 8 372 740 373 727 1.07e-16 84.7
MS.gene052092.t1 MTR_4g026485 24.458 323 215 8 376 691 274 574 2.46e-16 83.6
MS.gene052092.t1 MTR_8g077940 22.691 379 262 12 372 740 183 540 8.87e-12 68.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene052092.t1 AT1G07530 49.000 700 315 10 68 743 86 767 0.0 634
MS.gene052092.t1 AT2G29060 47.323 691 267 14 62 742 53 656 0.0 583
MS.gene052092.t1 AT2G29060 47.338 695 298 14 62 742 53 693 0.0 579
MS.gene052092.t1 AT1G07520 45.586 691 295 12 69 743 70 695 0.0 560
MS.gene052092.t1 AT1G07520 45.586 691 295 12 69 743 71 696 0.0 560
MS.gene052092.t1 AT2G29065 44.695 754 282 18 1 743 1 630 0.0 557
MS.gene052092.t1 AT1G07520 51.337 561 218 10 194 743 15 531 0.0 548
MS.gene052092.t1 AT1G07520 51.337 561 218 10 194 743 15 531 0.0 548
MS.gene052092.t1 AT2G37650 41.690 710 318 15 61 742 73 714 1.81e-171 510
MS.gene052092.t1 AT2G37650 41.690 710 318 15 61 742 61 702 3.37e-171 509
MS.gene052092.t1 AT3G46600 50.783 447 207 5 297 743 116 549 2.84e-158 470
MS.gene052092.t1 AT3G46600 50.783 447 207 5 297 743 148 581 3.46e-158 471
MS.gene052092.t1 AT5G59450 47.410 502 246 8 257 743 102 600 1.50e-157 470
MS.gene052092.t1 AT3G46600 55.053 376 166 2 368 743 1 373 1.68e-150 443
MS.gene052092.t1 AT1G50600 31.915 376 249 4 367 740 155 525 4.00e-60 212
MS.gene052092.t1 AT1G50600 31.915 376 249 4 367 740 226 596 1.51e-59 212
MS.gene052092.t1 AT1G50600 31.915 376 249 4 367 740 230 600 2.40e-59 211
MS.gene052092.t1 AT5G48150 28.967 397 276 3 344 740 99 489 1.56e-58 206
MS.gene052092.t1 AT5G48150 28.967 397 276 3 344 740 99 489 1.56e-58 206
MS.gene052092.t1 AT5G48150 28.967 397 276 3 344 740 99 489 1.56e-58 206
MS.gene052092.t1 AT5G48150 28.967 397 276 3 344 740 99 489 1.56e-58 206
MS.gene052092.t1 AT2G04890 31.016 374 248 4 367 740 49 412 2.79e-58 204
MS.gene052092.t1 AT1G21450 29.825 456 303 9 292 740 147 592 5.26e-58 207
MS.gene052092.t1 AT1G66350 33.245 379 226 9 366 740 150 505 8.85e-52 188
MS.gene052092.t1 AT3G54220 30.095 422 277 7 324 742 245 651 1.28e-51 191
MS.gene052092.t1 AT4G17230 31.842 380 250 5 366 742 153 526 3.39e-51 187
MS.gene052092.t1 AT4G17230 31.842 380 250 5 366 742 153 526 3.39e-51 187
MS.gene052092.t1 AT2G01570 31.217 378 241 8 366 740 219 580 5.68e-49 182
MS.gene052092.t1 AT3G03450 29.894 378 251 8 366 740 178 544 5.84e-49 181
MS.gene052092.t1 AT1G14920 31.746 378 239 8 366 740 167 528 1.60e-48 180
MS.gene052092.t1 AT5G66770 33.231 325 203 7 375 696 224 537 1.86e-47 177
MS.gene052092.t1 AT1G50420 26.047 430 250 8 371 740 57 478 4.21e-44 166
MS.gene052092.t1 AT5G17490 27.632 380 251 8 366 740 155 515 2.40e-42 162
MS.gene052092.t1 AT3G50650 30.294 340 212 7 381 711 185 508 1.73e-39 154
MS.gene052092.t1 AT1G63100 31.871 342 214 9 367 701 248 577 5.45e-39 154
MS.gene052092.t1 AT1G63100 31.871 342 214 9 367 701 273 602 5.45e-39 154
MS.gene052092.t1 AT5G41920 27.559 381 251 7 366 740 38 399 5.89e-39 149
MS.gene052092.t1 AT3G49950 28.900 391 248 12 371 742 30 409 4.61e-36 141
MS.gene052092.t1 AT5G52510 25.773 388 258 10 369 740 266 639 1.18e-35 144
MS.gene052092.t1 AT4G37650 26.463 393 262 9 370 742 145 530 1.09e-33 136
MS.gene052092.t1 AT1G55580 27.187 423 239 12 368 740 41 444 9.64e-31 126
MS.gene052092.t1 AT4G08250 24.769 432 289 17 326 740 64 476 1.07e-24 108
MS.gene052092.t1 AT3G13840 23.934 422 275 14 330 740 112 498 4.89e-18 88.6
MS.gene052092.t1 AT4G00150 23.704 405 257 13 351 740 186 553 2.27e-15 80.5
MS.gene052092.t1 AT5G67411 30.846 201 125 8 488 677 1 198 1.44e-11 64.7

Find 173 sgRNAs with CRISPR-Local

Find 200 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACCCTTCACATTATTGATTT+TGG 0.112468 2.2:-5016822 MS.gene052092:CDS
CATCAAAGACAAAATCTTTA+TGG 0.121774 2.2:+5016112 None:intergenic
CCAGTTTCTGGTGGTGATTC+TGG 0.150366 2.2:-5017797 MS.gene052092:CDS
TCACCTGATACACCAGTTTC+TGG 0.198731 2.2:-5017809 MS.gene052092:CDS
TTGAATGGTTTCCCAGTTTC+GGG 0.204080 2.2:+5016599 None:intergenic
TTTGTTCAATCCATAGTAAA+TGG 0.225738 2.2:-5016432 MS.gene052092:CDS
TGTTGTGTTCCTACTGATTC+TGG 0.235374 2.2:-5017866 MS.gene052092:CDS
ATCTTCAAAGGTAGAATCTT+TGG 0.257325 2.2:+5018084 None:intergenic
CCTCATTGCTCTTAATATTA+AGG 0.263212 2.2:+5016568 None:intergenic
TTCAAGTTCAAATTTGAATT+CGG 0.265372 2.2:-5017459 MS.gene052092:CDS
TTTGAATGGTTTCCCAGTTT+CGG 0.285892 2.2:+5016598 None:intergenic
AGGCCATACCATCCCGAAAC+TGG 0.299357 2.2:-5016611 MS.gene052092:CDS
CAGCAGCACTAAACATCTTT+TGG 0.300712 2.2:+5016949 None:intergenic
AGGAAGCATTCTTCTCCTTC+AGG 0.315645 2.2:-5017065 MS.gene052092:CDS
TGCCGGTCGAAAGCCAGCTT+GGG 0.317241 2.2:+5016704 None:intergenic
CTCAAACTGAAACCATGATT+TGG 0.321027 2.2:+5017743 None:intergenic
TATCAAACATTGCAGAATAA+TGG 0.321158 2.2:+5016361 None:intergenic
ATTATAAGACCCATTTACTA+TGG 0.323109 2.2:+5016422 None:intergenic
AACTTCAGAACTGCATCTTT+AGG 0.332688 2.2:+5016480 None:intergenic
AAATCGTTAAGGTTTGGATT+TGG 0.332771 2.2:+5018172 None:intergenic
AGTGGCAGGTTAGGAATCTA+AGG 0.333559 2.2:-5016206 MS.gene052092:CDS
AATCTTCTTCCATTAGAATC+TGG 0.335576 2.2:+5018029 None:intergenic
CCACCAGAAACTGGTGTATC+AGG 0.337940 2.2:+5017806 None:intergenic
TCAAGTTCAAATTTGAATTC+GGG 0.339297 2.2:-5017458 MS.gene052092:CDS
TCAAGATGGAGGGTGGTGTT+AGG 0.341116 2.2:-5017502 MS.gene052092:CDS
GGAATCTAAGGGCTGGCTTT+AGG 0.342541 2.2:-5016194 MS.gene052092:CDS
GCAGTTTAGAAAAGGGTTAG+AGG 0.342843 2.2:-5017627 MS.gene052092:CDS
TTCTTCTGAGACTAGGGTTA+TGG 0.353283 2.2:-5017684 MS.gene052092:CDS
TGTGGATTTGAGGACCCTTT+TGG 0.355547 2.2:-5017153 MS.gene052092:CDS
CAGTTTATTGTTCCAAATCA+TGG 0.358564 2.2:-5017755 MS.gene052092:CDS
AAATATCTGATATGTTTGAT+AGG 0.361784 2.2:-5017310 MS.gene052092:CDS
TACGTATGCTTCGGCTGGTT+GGG 0.371904 2.2:-5016049 MS.gene052092:CDS
ATGAATTGTTGAGGCAGATT+AGG 0.382955 2.2:-5017085 MS.gene052092:CDS
CAGCCGAAGCATACGTAATT+CGG 0.384019 2.2:+5016055 None:intergenic
ACATCAAGAGGGTGTTGATT+AGG 0.390520 2.2:+5017911 None:intergenic
GTTTCGAATCCGACAAAGTT+CGG 0.391177 2.2:+5018241 None:intergenic
CATACAAACAGTGGCAGGTT+AGG 0.391689 2.2:-5016215 MS.gene052092:CDS
CTGCCGGTCGAAAGCCAGCT+TGG 0.397922 2.2:+5016703 None:intergenic
ATTAAGGTCTTCAATTTGAA+TGG 0.400958 2.2:+5016584 None:intergenic
TTACGTATGCTTCGGCTGGT+TGG 0.401437 2.2:-5016050 MS.gene052092:CDS
CAAGATGGAGGGTGGTGTTA+GGG 0.405701 2.2:-5017501 MS.gene052092:CDS
CAATGTTTCCTTCGAATACA+AGG 0.408276 2.2:-5016631 MS.gene052092:CDS
ATGGTGAAATCGTTAAGGTT+TGG 0.408700 2.2:+5018166 None:intergenic
ATGCAGTTCTGAAGTTAATC+AGG 0.410047 2.2:-5016473 MS.gene052092:CDS
GAATTGGATGGGCCCACATA+AGG 0.415523 2.2:+5018136 None:intergenic
CTGCCACTGTTTGTATGTCT+CGG 0.422026 2.2:+5016221 None:intergenic
CCAGAATCACCACCAGAAAC+TGG 0.422848 2.2:+5017797 None:intergenic
CTGTGTCTGCTAATGACAAT+AGG 0.426533 2.2:-5017115 MS.gene052092:CDS
ATTTGGATTCTTCTGAGACT+AGG 0.434021 2.2:-5017691 MS.gene052092:CDS
ATATATAAGCCAGATTCTAA+TGG 0.435212 2.2:-5018038 MS.gene052092:CDS
AGTTCAAATTCGAATTCAAA+TGG 0.435366 2.2:-5017428 MS.gene052092:CDS
TAATGGCCAGATTTAGAGAT+AGG 0.438554 2.2:-5016149 MS.gene052092:CDS
TAGGCAACTCCCACTGGATA+AGG 0.439045 2.2:-5016175 MS.gene052092:CDS
TTTGGATTCTTCTGAGACTA+GGG 0.441086 2.2:-5017690 MS.gene052092:CDS
CACCATGACCAACCCTTATG+TGG 0.441330 2.2:-5018149 MS.gene052092:CDS
ACTCAGGTTGGTGAGCTTGA+TGG 0.441788 2.2:-5017218 MS.gene052092:CDS
TCTTAGCCTATCTCTAAATC+TGG 0.445660 2.2:+5016143 None:intergenic
TTCCCAGTTTCGGGATGGTA+TGG 0.447770 2.2:+5016608 None:intergenic
CGCATGGTTGGTGCTGGTAC+CGG 0.452661 2.2:-5016993 MS.gene052092:CDS
TGGTCATGGTGAAATCGTTA+AGG 0.453510 2.2:+5018161 None:intergenic
AATTCCTGTGATCCTCAACT+TGG 0.460110 2.2:+5016734 None:intergenic
TTGTTCAATCCATAGTAAAT+GGG 0.464694 2.2:-5016431 MS.gene052092:CDS
TCTTTGATGAAGATAACAAC+TGG 0.466798 2.2:-5016098 MS.gene052092:CDS
TTTAGTGTCTCATGAGCCTA+AGG 0.471760 2.2:-5017540 MS.gene052092:CDS
TGGCTTTAGGCAACTCCCAC+TGG 0.476205 2.2:-5016181 MS.gene052092:CDS
ACCATGGTCATCGAATTTGT+AGG 0.476706 2.2:+5018216 None:intergenic
GCAGAGAGAATAGAGGAAAC+TGG 0.479525 2.2:-5016684 MS.gene052092:CDS
GATAACAACTGGATGCTTCA+AGG 0.480041 2.2:-5016087 MS.gene052092:CDS
TCATATCCCGTGAAAATGAA+TGG 0.481425 2.2:-5016326 MS.gene052092:CDS
AGAAGGAAACTGTGGATTTG+AGG 0.481509 2.2:-5017163 MS.gene052092:CDS
GCTATGGATCCGAACTTTGT+CGG 0.481965 2.2:-5018250 MS.gene052092:CDS
TGCCACTGTTTGTATGTCTC+GGG 0.483709 2.2:+5016222 None:intergenic
TTATGTGGGCCCATCCAATT+CGG 0.491734 2.2:-5018134 MS.gene052092:CDS
AATTGGATGGGCCCACATAA+GGG 0.496632 2.2:+5018137 None:intergenic
TGGCTGTGAACTGTTTGGTA+AGG 0.497180 2.2:-5016542 MS.gene052092:CDS
CCCACTGGATAAGGAGGTAA+TGG 0.498395 2.2:-5016166 MS.gene052092:CDS
CGAATTACGTATGCTTCGGC+TGG 0.503997 2.2:-5016054 MS.gene052092:CDS
TTGAAGCGTGTGGAAAAGAA+AGG 0.504187 2.2:+5016396 None:intergenic
AATATCTGATATGTTTGATA+GGG 0.504258 2.2:-5017309 MS.gene052092:CDS
GGAACACAACAATTGCTACT+AGG 0.506690 2.2:+5017878 None:intergenic
GGGTGTTGATTAGGTGAAAG+AGG 0.507344 2.2:+5017920 None:intergenic
TATTAAGAGCAATGAGGTAG+TGG 0.510345 2.2:-5016562 MS.gene052092:CDS
ACAACTGGATGCTTCAAGGT+TGG 0.515568 2.2:-5016083 MS.gene052092:CDS
GTTTCCTCTATTCTCTCTGC+CGG 0.517130 2.2:+5016687 None:intergenic
GTCTCATGAGCCTAAGGGTA+GGG 0.518003 2.2:-5017534 MS.gene052092:CDS
TCCCCAAGCTGGCTTTCGAC+CGG 0.518500 2.2:-5016706 MS.gene052092:CDS
CCATTACCTCCTTATCCAGT+GGG 0.519924 2.2:+5016166 None:intergenic
ACGAGTGGCTCCGAATTGGA+TGG 0.521140 2.2:+5018124 None:intergenic
GCCGCTGTGTGCTGAACAAA+AGG 0.522967 2.2:-5017264 MS.gene052092:CDS
AGGCCGAATTACGTATGCTT+CGG 0.526366 2.2:-5016058 MS.gene052092:CDS
CTCTGTGATGCATCACCTGA+AGG 0.529263 2.2:+5017050 None:intergenic
TCAGTAACATATCATTATGC+TGG 0.533464 2.2:+5016024 None:intergenic
AGGTGATGCATCACAGAGAA+TGG 0.535230 2.2:-5017045 MS.gene052092:CDS
TACCAAAATCAATAATGTGA+AGG 0.537288 2.2:+5016820 None:intergenic
GCGATTGAAGCGCGCATGGT+TGG 0.539201 2.2:-5017005 MS.gene052092:CDS
CATGAGCCTAAGGGTAGGGT+TGG 0.539617 2.2:-5017530 MS.gene052092:CDS
AAAGAAACAAGGGAGGAAGA+AGG 0.539726 2.2:-5017180 MS.gene052092:CDS
ACCAAAATCAATAATGTGAA+GGG 0.539883 2.2:+5016821 None:intergenic
TCAGTATGTTGAAGACTAAG+TGG 0.541144 2.2:+5017977 None:intergenic
GAAGCGCGCATGGTTGGTGC+TGG 0.541418 2.2:-5016999 MS.gene052092:CDS
GCCATTACCTCCTTATCCAG+TGG 0.541967 2.2:+5016165 None:intergenic
CCACCCAAGTTGAGGATCAC+AGG 0.542256 2.2:-5016738 MS.gene052092:CDS
CATATATAATATTTGTGTAC+CGG 0.543480 2.2:+5016974 None:intergenic
TAGGGTTGGAGTGATCAAGA+TGG 0.543815 2.2:-5017516 MS.gene052092:CDS
GGAATTGAGTATCCCCAAGC+TGG 0.546615 2.2:-5016717 MS.gene052092:CDS
GTATCTTATATGGTTTCCAG+TGG 0.547028 2.2:-5016800 MS.gene052092:CDS
GGTAGTGGCTGTGAACTGTT+TGG 0.549486 2.2:-5016547 MS.gene052092:CDS
AGTAATAGTAATATTAGTGA+TGG 0.551444 2.2:-5017722 MS.gene052092:CDS
GGTTGGAGTGATCAAGATGG+AGG 0.554472 2.2:-5017513 MS.gene052092:CDS
TGAAGCGTGTGGAAAAGAAA+GGG 0.554500 2.2:+5016397 None:intergenic
CTTGTGCACAAAGAACCAAA+AGG 0.555209 2.2:+5017138 None:intergenic
CGAGACATACAAACAGTGGC+AGG 0.561859 2.2:-5016220 MS.gene052092:CDS
ACCATGACCAACCCTTATGT+GGG 0.562138 2.2:-5018148 MS.gene052092:CDS
CAGGTTAGGAATCTAAGGGC+TGG 0.564666 2.2:-5016201 MS.gene052092:CDS
GGCCATACCATCCCGAAACT+GGG 0.564944 2.2:-5016610 MS.gene052092:CDS
ATTCCTGTGATCCTCAACTT+GGG 0.566789 2.2:+5016735 None:intergenic
TCGACCGGCAGAGAGAATAG+AGG 0.567756 2.2:-5016691 MS.gene052092:CDS
ACTGGTGTATCAGGTGAAAG+AGG 0.568315 2.2:+5017815 None:intergenic
ACTTAATAAGAATTGGCCAC+TGG 0.572363 2.2:+5016784 None:intergenic
CAAGAAAGTGACGATGAAGA+AGG 0.574577 2.2:-5017374 MS.gene052092:CDS
CTACAACATTCATAATCTCC+CGG 0.577244 2.2:+5016274 None:intergenic
ATGAATGTTGTAGCATGTGA+AGG 0.579064 2.2:-5016264 MS.gene052092:CDS
TTGTGCACAAAGAACCAAAA+GGG 0.580206 2.2:+5017139 None:intergenic
ATGGTTTCCCAGTTTCGGGA+TGG 0.581937 2.2:+5016603 None:intergenic
CTGTGTGCTGAACAAAAGGA+TGG 0.582319 2.2:-5017260 MS.gene052092:CDS
CAGGTTGGTGAGCTTGATGG+AGG 0.586798 2.2:-5017215 MS.gene052092:CDS
TTAGAGATAGGCTAAGAGAA+TGG 0.591729 2.2:-5016137 MS.gene052092:CDS
GGATGGGCCCACATAAGGGT+TGG 0.592672 2.2:+5018141 None:intergenic
CCTGTGATCCTCAACTTGGG+TGG 0.597902 2.2:+5016738 None:intergenic
TGGTGAGCTTGATGGAGGGA+AGG 0.598425 2.2:-5017210 MS.gene052092:CDS
GGAATCTCAAGAACATCAAG+AGG 0.598639 2.2:+5017899 None:intergenic
TGGATGCTTCAAGGTTGGAA+AGG 0.598660 2.2:-5016078 MS.gene052092:CDS
CGAGTGGCTCCGAATTGGAT+GGG 0.599028 2.2:+5018125 None:intergenic
GTTGGAGTGATCAAGATGGA+GGG 0.607035 2.2:-5017512 MS.gene052092:CDS
GAACTATTACCAGAATCAGT+AGG 0.607462 2.2:+5017857 None:intergenic
GGAGTGATCAAGATGGAGGG+TGG 0.608714 2.2:-5017509 MS.gene052092:CDS
AAGTGACTCCTTGAAGCGTG+TGG 0.608768 2.2:+5016386 None:intergenic
GAATGCGATTGAAGCGCGCA+TGG 0.609128 2.2:-5017009 MS.gene052092:CDS
TGTCTCATGAGCCTAAGGGT+AGG 0.616168 2.2:-5017535 MS.gene052092:CDS
CAGTATGTTGAAGACTAAGT+GGG 0.617757 2.2:+5017978 None:intergenic
GCCCACATAAGGGTTGGTCA+TGG 0.617923 2.2:+5018147 None:intergenic
TGGTATGGCCTTGTATTCGA+AGG 0.618500 2.2:+5016623 None:intergenic
AGATATTTCACTCTCCTCAA+CGG 0.618626 2.2:+5017325 None:intergenic
AGTGGTGGAAAGTAGAACTC+AGG 0.620773 2.2:-5017234 MS.gene052092:CDS
AAGGCACATACAAAGAAACA+AGG 0.622167 2.2:-5017191 MS.gene052092:CDS
GCCGGTCGAAAGCCAGCTTG+GGG 0.629257 2.2:+5016705 None:intergenic
GCAGTCTGCGGTTTCCGTTG+AGG 0.630810 2.2:-5017339 MS.gene052092:CDS
ACAAAAGGATGGATCAGTGG+TGG 0.631801 2.2:-5017249 MS.gene052092:CDS
AGGTTGGTGAGCTTGATGGA+GGG 0.634801 2.2:-5017214 MS.gene052092:CDS
AGAGAATAGAGGAAACTGGC+CGG 0.638860 2.2:-5016680 MS.gene052092:CDS
GCAACTCCCACTGGATAAGG+AGG 0.639677 2.2:-5016172 MS.gene052092:CDS
CACAATAGTTAGCTAAACGC+CGG 0.640868 2.2:+5016661 None:intergenic
ACCTACAAATTCGATGACCA+TGG 0.643298 2.2:-5018217 MS.gene052092:CDS
ATCACTCCAACCCTACCCTT+AGG 0.645813 2.2:+5017524 None:intergenic
TTAGTGTCTCATGAGCCTAA+GGG 0.648279 2.2:-5017539 MS.gene052092:CDS
GTGGCAGGTTAGGAATCTAA+GGG 0.650267 2.2:-5016205 MS.gene052092:CDS
AGAGAAGAATTAGATTACCA+TGG 0.658943 2.2:+5018200 None:intergenic
GGACTGCTAATGAATTGTTG+AGG 0.659007 2.2:-5017094 MS.gene052092:CDS
CCTGATACACCAGTTTCTGG+TGG 0.666329 2.2:-5017806 MS.gene052092:CDS
GTGGAAAGTAGAACTCAGGT+TGG 0.667091 2.2:-5017230 MS.gene052092:CDS
AGTGGGTCATAACACATGCA+TGG 0.667506 2.2:+5017995 None:intergenic
AGGGTGGACCACCCAAGTTG+AGG 0.670566 2.2:-5016746 MS.gene052092:CDS
GAAGCGTGTGGAAAAGAAAG+GGG 0.671904 2.2:+5016398 None:intergenic
GGCCCGAGACATACAAACAG+TGG 0.676458 2.2:-5016224 MS.gene052092:CDS
CCTTAATATTAAGAGCAATG+AGG 0.678676 2.2:-5016568 MS.gene052092:CDS
AAGAAGTAACAAGCAGTCTG+CGG 0.680051 2.2:-5017351 MS.gene052092:CDS
GAATCTCAAGAACATCAAGA+GGG 0.681038 2.2:+5017900 None:intergenic
CACATACAAAGAAACAAGGG+AGG 0.681274 2.2:-5017187 MS.gene052092:CDS
ATGGATTGAACAAATATGCG+CGG 0.684340 2.2:+5016441 None:intergenic
AGGGAGGAAGAAGGAAACTG+TGG 0.685784 2.2:-5017171 MS.gene052092:CDS
TGAACAAAAGGATGGATCAG+TGG 0.692488 2.2:-5017252 MS.gene052092:CDS
AGGCACATACAAAGAAACAA+GGG 0.704355 2.2:-5017190 MS.gene052092:CDS
TATCCCGTGAAAATGAATGG+AGG 0.724072 2.2:-5016323 MS.gene052092:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATATCTGATATGTTTGAT+AGG - chr2.2:5016975-5016994 MS.gene052092:CDS 20.0%
!! AATATCTGATATGTTTGATA+GGG - chr2.2:5016976-5016995 MS.gene052092:CDS 20.0%
!! AGTAATAGTAATATTAGTGA+TGG - chr2.2:5016563-5016582 MS.gene052092:CDS 20.0%
!! CATATATAATATTTGTGTAC+CGG + chr2.2:5017314-5017333 None:intergenic 20.0%
!! GACAAAAACTTAATAAGAAT+TGG + chr2.2:5017511-5017530 None:intergenic 20.0%
!!! AAATGTGCAAATTTTTTGAA+AGG + chr2.2:5017400-5017419 None:intergenic 20.0%
!!! AATGTGCAAATTTTTTGAAA+GGG + chr2.2:5017399-5017418 None:intergenic 20.0%
!!! ATTGATTTTGGTATCTTATA+TGG - chr2.2:5017475-5017494 MS.gene052092:CDS 20.0%
!!! TTCAAGTTCAAATTTGAATT+CGG - chr2.2:5016826-5016845 MS.gene052092:CDS 20.0%
! ACCAAAATCAATAATGTGAA+GGG + chr2.2:5017467-5017486 None:intergenic 25.0%
! AGTTCAAATTCGAATTCAAA+TGG - chr2.2:5016857-5016876 MS.gene052092:CDS 25.0%
! ATATATAAGCCAGATTCTAA+TGG - chr2.2:5016247-5016266 MS.gene052092:CDS 25.0%
! ATTAAGGTCTTCAATTTGAA+TGG + chr2.2:5017704-5017723 None:intergenic 25.0%
! ATTATAAGACCCATTTACTA+TGG + chr2.2:5017866-5017885 None:intergenic 25.0%
! CATCAAAGACAAAATCTTTA+TGG + chr2.2:5018176-5018195 None:intergenic 25.0%
! TACCAAAATCAATAATGTGA+AGG + chr2.2:5017468-5017487 None:intergenic 25.0%
! TATCAAACATTGCAGAATAA+TGG + chr2.2:5017927-5017946 None:intergenic 25.0%
! TCAAGTTCAAATTTGAATTC+GGG - chr2.2:5016827-5016846 MS.gene052092:CDS 25.0%
! TTGTTCAATCCATAGTAAAT+GGG - chr2.2:5017854-5017873 MS.gene052092:CDS 25.0%
! TTTGTTCAATCCATAGTAAA+TGG - chr2.2:5017853-5017872 MS.gene052092:CDS 25.0%
!! AAGTTTTTGTCAAAAGTAGA+GGG - chr2.2:5017520-5017539 MS.gene052092:CDS 25.0%
!! CTATTTTGCAGTTTAGAAAA+GGG - chr2.2:5016651-5016670 MS.gene052092:CDS 25.0%
!! GAAAATTTTCTTTGATGCTT+TGG - chr2.2:5016331-5016350 MS.gene052092:CDS 25.0%
!! TAAGTTTTTGTCAAAAGTAG+AGG - chr2.2:5017519-5017538 MS.gene052092:CDS 25.0%
!! TCTATTTTGCAGTTTAGAAA+AGG - chr2.2:5016650-5016669 MS.gene052092:CDS 25.0%
AAATCGTTAAGGTTTGGATT+TGG + chr2.2:5016116-5016135 None:intergenic 30.0%
AATCTTCTTCCATTAGAATC+TGG + chr2.2:5016259-5016278 None:intergenic 30.0%
AGAGAAGAATTAGATTACCA+TGG + chr2.2:5016088-5016107 None:intergenic 30.0%
ATCTTCAAAGGTAGAATCTT+TGG + chr2.2:5016204-5016223 None:intergenic 30.0%
CAGTTTATTGTTCCAAATCA+TGG - chr2.2:5016530-5016549 MS.gene052092:CDS 30.0%
CCTCATTGCTCTTAATATTA+AGG + chr2.2:5017720-5017739 None:intergenic 30.0%
CCTTAATATTAAGAGCAATG+AGG - chr2.2:5017717-5017736 MS.gene052092:CDS 30.0%
TCTTTGATGAAGATAACAAC+TGG - chr2.2:5018187-5018206 MS.gene052092:CDS 30.0%
TGAAAAATCAGCATCTTCAA+AGG + chr2.2:5016216-5016235 None:intergenic 30.0%
! ATGATTGAGAGAGAGTTTTT+GGG - chr2.2:5017988-5018007 MS.gene052092:CDS 30.0%
!! GATTTTGAAAACAGCTGAAA+AGG - chr2.2:5017435-5017454 MS.gene052092:CDS 30.0%
!! TAGTGATGGTGTTTTTGATT+TGG - chr2.2:5016577-5016596 MS.gene052092:CDS 30.0%
!!! ACCCTTCACATTATTGATTT+TGG - chr2.2:5017463-5017482 MS.gene052092:CDS 30.0%
AACTTCAGAACTGCATCTTT+AGG + chr2.2:5017808-5017827 None:intergenic 35.0%
AAGGCACATACAAAGAAACA+AGG - chr2.2:5017094-5017113 MS.gene052092:CDS 35.0%
ACTTAATAAGAATTGGCCAC+TGG + chr2.2:5017504-5017523 None:intergenic 35.0%
AGATATTTCACTCTCCTCAA+CGG + chr2.2:5016963-5016982 None:intergenic 35.0%
AGGCACATACAAAGAAACAA+GGG - chr2.2:5017095-5017114 MS.gene052092:CDS 35.0%
ATGAATGTTGTAGCATGTGA+AGG - chr2.2:5018021-5018040 MS.gene052092:CDS 35.0%
ATGAATTGTTGAGGCAGATT+AGG - chr2.2:5017200-5017219 MS.gene052092:CDS 35.0%
ATGGTGAAATCGTTAAGGTT+TGG + chr2.2:5016122-5016141 None:intergenic 35.0%
CAATGTTTCCTTCGAATACA+AGG - chr2.2:5017654-5017673 MS.gene052092:CDS 35.0%
CAGTATGTTGAAGACTAAGT+GGG + chr2.2:5016310-5016329 None:intergenic 35.0%
CTACAACATTCATAATCTCC+CGG + chr2.2:5018014-5018033 None:intergenic 35.0%
CTCAAACTGAAACCATGATT+TGG + chr2.2:5016545-5016564 None:intergenic 35.0%
GAACTATTACCAGAATCAGT+AGG + chr2.2:5016431-5016450 None:intergenic 35.0%
GAATCTCAAGAACATCAAGA+GGG + chr2.2:5016388-5016407 None:intergenic 35.0%
GTATCTTATATGGTTTCCAG+TGG - chr2.2:5017485-5017504 MS.gene052092:CDS 35.0%
TAATGGCCAGATTTAGAGAT+AGG - chr2.2:5018136-5018155 MS.gene052092:CDS 35.0%
TATTAAGAGCAATGAGGTAG+TGG - chr2.2:5017723-5017742 MS.gene052092:CDS 35.0%
TCAGTATGTTGAAGACTAAG+TGG + chr2.2:5016311-5016330 None:intergenic 35.0%
TCATATCCCGTGAAAATGAA+TGG - chr2.2:5017959-5017978 MS.gene052092:CDS 35.0%
TCTTAGCCTATCTCTAAATC+TGG + chr2.2:5018145-5018164 None:intergenic 35.0%
TTAGAGATAGGCTAAGAGAA+TGG - chr2.2:5018148-5018167 MS.gene052092:CDS 35.0%
TTGTGCACAAAGAACCAAAA+GGG + chr2.2:5017149-5017168 None:intergenic 35.0%
TTTGAATGGTTTCCCAGTTT+CGG + chr2.2:5017690-5017709 None:intergenic 35.0%
! ATGGATTGAACAAATATGCG+CGG + chr2.2:5017847-5017866 None:intergenic 35.0%
! CAAAAAGCTCAGCTTTTTAC+TGG - chr2.2:5016701-5016720 MS.gene052092:CDS 35.0%
! GATGATTGAGAGAGAGTTTT+TGG - chr2.2:5017987-5018006 MS.gene052092:CDS 35.0%
! GTAAAAAGCTGAGCTTTTTG+AGG + chr2.2:5016701-5016720 None:intergenic 35.0%
! TTTTTGTCAAAAGTAGAGGG+TGG - chr2.2:5017523-5017542 MS.gene052092:CDS 35.0%
!! ATGCAGTTCTGAAGTTAATC+AGG - chr2.2:5017812-5017831 MS.gene052092:CDS 35.0%
!! ATTTGGATTCTTCTGAGACT+AGG - chr2.2:5016594-5016613 MS.gene052092:CDS 35.0%
!! TTTGGATTCTTCTGAGACTA+GGG - chr2.2:5016595-5016614 MS.gene052092:CDS 35.0%
AAAGAAACAAGGGAGGAAGA+AGG - chr2.2:5017105-5017124 MS.gene052092:CDS 40.0%
AAGAAGTAACAAGCAGTCTG+CGG - chr2.2:5016934-5016953 MS.gene052092:CDS 40.0%
AATTCCTGTGATCCTCAACT+TGG + chr2.2:5017554-5017573 None:intergenic 40.0%
ACCATGGTCATCGAATTTGT+AGG + chr2.2:5016072-5016091 None:intergenic 40.0%
ACCTACAAATTCGATGACCA+TGG - chr2.2:5016068-5016087 MS.gene052092:CDS 40.0%
AGAAGGAAACTGTGGATTTG+AGG - chr2.2:5017122-5017141 MS.gene052092:CDS 40.0%
ATTCCTGTGATCCTCAACTT+GGG + chr2.2:5017553-5017572 None:intergenic 40.0%
CAAGAAAGTGACGATGAAGA+AGG - chr2.2:5016911-5016930 MS.gene052092:CDS 40.0%
CACAATAGTTAGCTAAACGC+CGG + chr2.2:5017627-5017646 None:intergenic 40.0%
CACATACAAAGAAACAAGGG+AGG - chr2.2:5017098-5017117 MS.gene052092:CDS 40.0%
CTGTGTCTGCTAATGACAAT+AGG - chr2.2:5017170-5017189 MS.gene052092:CDS 40.0%
CTTGTGCACAAAGAACCAAA+AGG + chr2.2:5017150-5017169 None:intergenic 40.0%
GATAACAACTGGATGCTTCA+AGG - chr2.2:5018198-5018217 MS.gene052092:CDS 40.0%
GCAGTTTAGAAAAGGGTTAG+AGG - chr2.2:5016658-5016677 MS.gene052092:CDS 40.0%
GCATCAGAAGAAAAAACGAG+TGG + chr2.2:5016179-5016198 None:intergenic 40.0%
GGAACACAACAATTGCTACT+AGG + chr2.2:5016410-5016429 None:intergenic 40.0%
GGAATCTCAAGAACATCAAG+AGG + chr2.2:5016389-5016408 None:intergenic 40.0%
GGACTGCTAATGAATTGTTG+AGG - chr2.2:5017191-5017210 MS.gene052092:CDS 40.0%
GGCAAGCAGAGATAAAAACT+TGG + chr2.2:5017378-5017397 None:intergenic 40.0%
GTTTCGAATCCGACAAAGTT+CGG + chr2.2:5016047-5016066 None:intergenic 40.0%
TATCCCGTGAAAATGAATGG+AGG - chr2.2:5017962-5017981 MS.gene052092:CDS 40.0%
TGAACAAAAGGATGGATCAG+TGG - chr2.2:5017033-5017052 MS.gene052092:CDS 40.0%
TGAAGCGTGTGGAAAAGAAA+GGG + chr2.2:5017891-5017910 None:intergenic 40.0%
TGGTCATGGTGAAATCGTTA+AGG + chr2.2:5016127-5016146 None:intergenic 40.0%
TTAGTGTCTCATGAGCCTAA+GGG - chr2.2:5016746-5016765 MS.gene052092:CDS 40.0%
TTGAAGCGTGTGGAAAAGAA+AGG + chr2.2:5017892-5017911 None:intergenic 40.0%
TTGAATGGTTTCCCAGTTTC+GGG + chr2.2:5017689-5017708 None:intergenic 40.0%
TTTAGTGTCTCATGAGCCTA+AGG - chr2.2:5016745-5016764 MS.gene052092:CDS 40.0%
! CAGCAGCACTAAACATCTTT+TGG + chr2.2:5017339-5017358 None:intergenic 40.0%
! TCGACCTCCATTCATTTTCA+CGG + chr2.2:5017969-5017988 None:intergenic 40.0%
! TTTCTTTTCCACACGCTTCA+AGG - chr2.2:5017891-5017910 MS.gene052092:CDS 40.0%
!! ACATCAAGAGGGTGTTGATT+AGG + chr2.2:5016377-5016396 None:intergenic 40.0%
!! TGTTGTGTTCCTACTGATTC+TGG - chr2.2:5016419-5016438 MS.gene052092:CDS 40.0%
!! TTCTTCTGAGACTAGGGTTA+TGG - chr2.2:5016601-5016620 MS.gene052092:CDS 40.0%
!!! AGCATGTGAAGGTTTTGAGA+GGG - chr2.2:5018032-5018051 MS.gene052092:CDS 40.0%
!!! TAGCATGTGAAGGTTTTGAG+AGG - chr2.2:5018031-5018050 MS.gene052092:CDS 40.0%
AAAAACGAGTGGCTCCGAAT+TGG + chr2.2:5016168-5016187 None:intergenic 45.0%
AATTGGATGGGCCCACATAA+GGG + chr2.2:5016151-5016170 None:intergenic 45.0%
ACAAAAGGATGGATCAGTGG+TGG - chr2.2:5017036-5017055 MS.gene052092:CDS 45.0%
ACAACTGGATGCTTCAAGGT+TGG - chr2.2:5018202-5018221 MS.gene052092:CDS 45.0%
ACCATGACCAACCCTTATGT+GGG - chr2.2:5016137-5016156 MS.gene052092:CDS 45.0%
ACTGGTGTATCAGGTGAAAG+AGG + chr2.2:5016473-5016492 None:intergenic 45.0%
AGAGAATAGAGGAAACTGGC+CGG - chr2.2:5017605-5017624 MS.gene052092:CDS 45.0%
AGGCCGAATTACGTATGCTT+CGG - chr2.2:5018227-5018246 MS.gene052092:CDS 45.0%
AGGTGATGCATCACAGAGAA+TGG - chr2.2:5017240-5017259 MS.gene052092:CDS 45.0%
AGTGGCAGGTTAGGAATCTA+AGG - chr2.2:5018079-5018098 MS.gene052092:CDS 45.0%
AGTGGGTCATAACACATGCA+TGG + chr2.2:5016293-5016312 None:intergenic 45.0%
CAGCCGAAGCATACGTAATT+CGG + chr2.2:5018233-5018252 None:intergenic 45.0%
CATACAAACAGTGGCAGGTT+AGG - chr2.2:5018070-5018089 MS.gene052092:CDS 45.0%
CCATTACCTCCTTATCCAGT+GGG + chr2.2:5018122-5018141 None:intergenic 45.0%
CTGCCACTGTTTGTATGTCT+CGG + chr2.2:5018067-5018086 None:intergenic 45.0%
CTGTGTGCTGAACAAAAGGA+TGG - chr2.2:5017025-5017044 MS.gene052092:CDS 45.0%
GAAGCGTGTGGAAAAGAAAG+GGG + chr2.2:5017890-5017909 None:intergenic 45.0%
GCAGAGAGAATAGAGGAAAC+TGG - chr2.2:5017601-5017620 MS.gene052092:CDS 45.0%
GTGGAAAGTAGAACTCAGGT+TGG - chr2.2:5017055-5017074 MS.gene052092:CDS 45.0%
GTGGCAGGTTAGGAATCTAA+GGG - chr2.2:5018080-5018099 MS.gene052092:CDS 45.0%
GTTGGAGTGATCAAGATGGA+GGG - chr2.2:5016773-5016792 MS.gene052092:CDS 45.0%
GTTTCCTCTATTCTCTCTGC+CGG + chr2.2:5017601-5017620 None:intergenic 45.0%
TAGGGTTGGAGTGATCAAGA+TGG - chr2.2:5016769-5016788 MS.gene052092:CDS 45.0%
TCACCTGATACACCAGTTTC+TGG - chr2.2:5016476-5016495 MS.gene052092:CDS 45.0%
TGCCACTGTTTGTATGTCTC+GGG + chr2.2:5018066-5018085 None:intergenic 45.0%
TGGATGCTTCAAGGTTGGAA+AGG - chr2.2:5018207-5018226 MS.gene052092:CDS 45.0%
TGGCTGTGAACTGTTTGGTA+AGG - chr2.2:5017743-5017762 MS.gene052092:CDS 45.0%
TTATGTGGGCCCATCCAATT+CGG - chr2.2:5016151-5016170 MS.gene052092:CDS 45.0%
! AGTGGTGGAAAGTAGAACTC+AGG - chr2.2:5017051-5017070 MS.gene052092:CDS 45.0%
! CGACCTCCATTCATTTTCAC+GGG + chr2.2:5017968-5017987 None:intergenic 45.0%
! TCCTTTTGTTCAGCACACAG+CGG + chr2.2:5017025-5017044 None:intergenic 45.0%
! TGTGGATTTGAGGACCCTTT+TGG - chr2.2:5017132-5017151 MS.gene052092:CDS 45.0%
!! AGGAAGCATTCTTCTCCTTC+AGG - chr2.2:5017220-5017239 MS.gene052092:CDS 45.0%
!! GGGTGTTGATTAGGTGAAAG+AGG + chr2.2:5016368-5016387 None:intergenic 45.0%
!! TGGTATGGCCTTGTATTCGA+AGG + chr2.2:5017665-5017684 None:intergenic 45.0%
!! TTGAGAGAGAGTTTTTGGGC+CGG - chr2.2:5017992-5018011 MS.gene052092:CDS 45.0%
!!! AAGGTTTTGAGAGGGTTGAG+AGG - chr2.2:5018040-5018059 MS.gene052092:CDS 45.0%
AAGTGACTCCTTGAAGCGTG+TGG + chr2.2:5017902-5017921 None:intergenic 50.0%
AGGGAGGAAGAAGGAAACTG+TGG - chr2.2:5017114-5017133 MS.gene052092:CDS 50.0%
ATCACTCCAACCCTACCCTT+AGG + chr2.2:5016764-5016783 None:intergenic 50.0%
ATGGTTTCCCAGTTTCGGGA+TGG + chr2.2:5017685-5017704 None:intergenic 50.0%
CACCATGACCAACCCTTATG+TGG - chr2.2:5016136-5016155 MS.gene052092:CDS 50.0%
CAGGTTAGGAATCTAAGGGC+TGG - chr2.2:5018084-5018103 MS.gene052092:CDS 50.0%
CCACCAGAAACTGGTGTATC+AGG + chr2.2:5016482-5016501 None:intergenic 50.0%
CCAGAATCACCACCAGAAAC+TGG + chr2.2:5016491-5016510 None:intergenic 50.0%
CCCACTGGATAAGGAGGTAA+TGG - chr2.2:5018119-5018138 MS.gene052092:CDS 50.0%
CGAATTACGTATGCTTCGGC+TGG - chr2.2:5018231-5018250 MS.gene052092:CDS 50.0%
CGAGACATACAAACAGTGGC+AGG - chr2.2:5018065-5018084 MS.gene052092:CDS 50.0%
CTCTGTGATGCATCACCTGA+AGG + chr2.2:5017238-5017257 None:intergenic 50.0%
GAATTGGATGGGCCCACATA+AGG + chr2.2:5016152-5016171 None:intergenic 50.0%
GCCATTACCTCCTTATCCAG+TGG + chr2.2:5018123-5018142 None:intergenic 50.0%
GGAATTGAGTATCCCCAAGC+TGG - chr2.2:5017568-5017587 MS.gene052092:CDS 50.0%
GGTTGGAGTGATCAAGATGG+AGG - chr2.2:5016772-5016791 MS.gene052092:CDS 50.0%
GTCTCATGAGCCTAAGGGTA+GGG - chr2.2:5016751-5016770 MS.gene052092:CDS 50.0%
TAGGCAACTCCCACTGGATA+AGG - chr2.2:5018110-5018129 MS.gene052092:CDS 50.0%
TCAAGATGGAGGGTGGTGTT+AGG - chr2.2:5016783-5016802 MS.gene052092:CDS 50.0%
TGTCTCATGAGCCTAAGGGT+AGG - chr2.2:5016750-5016769 MS.gene052092:CDS 50.0%
TTACGTATGCTTCGGCTGGT+TGG - chr2.2:5018235-5018254 MS.gene052092:CDS 50.0%
TTCCCAGTTTCGGGATGGTA+TGG + chr2.2:5017680-5017699 None:intergenic 50.0%
! CAAGATGGAGGGTGGTGTTA+GGG - chr2.2:5016784-5016803 MS.gene052092:CDS 50.0%
! CCTGATACACCAGTTTCTGG+TGG - chr2.2:5016479-5016498 MS.gene052092:CDS 50.0%
! GGTAGTGGCTGTGAACTGTT+TGG - chr2.2:5017738-5017757 MS.gene052092:CDS 50.0%
! TACGTATGCTTCGGCTGGTT+GGG - chr2.2:5018236-5018255 MS.gene052092:CDS 50.0%
!! ACTCAGGTTGGTGAGCTTGA+TGG - chr2.2:5017067-5017086 MS.gene052092:CDS 50.0%
!! AGGTTGGTGAGCTTGATGGA+GGG - chr2.2:5017071-5017090 MS.gene052092:CDS 50.0%
!! CCAGTTTCTGGTGGTGATTC+TGG - chr2.2:5016488-5016507 MS.gene052092:CDS 50.0%
!! GGAATCTAAGGGCTGGCTTT+AGG - chr2.2:5018091-5018110 MS.gene052092:CDS 50.0%
!! TGAGAGAGAGTTTTTGGGCC+GGG - chr2.2:5017993-5018012 MS.gene052092:CDS 50.0%
ACGAGTGGCTCCGAATTGGA+TGG + chr2.2:5016164-5016183 None:intergenic 55.0%
AGGCCATACCATCCCGAAAC+TGG - chr2.2:5017674-5017693 MS.gene052092:CDS 55.0%
CATGAGCCTAAGGGTAGGGT+TGG - chr2.2:5016755-5016774 MS.gene052092:CDS 55.0%
CCTGTGATCCTCAACTTGGG+TGG + chr2.2:5017550-5017569 None:intergenic 55.0%
CGAGTGGCTCCGAATTGGAT+GGG + chr2.2:5016163-5016182 None:intergenic 55.0%
GAATGCGATTGAAGCGCGCA+TGG - chr2.2:5017276-5017295 MS.gene052092:CDS 55.0%
GCAACTCCCACTGGATAAGG+AGG - chr2.2:5018113-5018132 MS.gene052092:CDS 55.0%
GCCGCTGTGTGCTGAACAAA+AGG - chr2.2:5017021-5017040 MS.gene052092:CDS 55.0%
GGAGTGATCAAGATGGAGGG+TGG - chr2.2:5016776-5016795 MS.gene052092:CDS 55.0%
GGCCATACCATCCCGAAACT+GGG - chr2.2:5017675-5017694 MS.gene052092:CDS 55.0%
GGCCCGAGACATACAAACAG+TGG - chr2.2:5018061-5018080 MS.gene052092:CDS 55.0%
TCGACCGGCAGAGAGAATAG+AGG - chr2.2:5017594-5017613 MS.gene052092:CDS 55.0%
TGGTGAGCTTGATGGAGGGA+AGG - chr2.2:5017075-5017094 MS.gene052092:CDS 55.0%
! CCACCCAAGTTGAGGATCAC+AGG - chr2.2:5017547-5017566 MS.gene052092:CDS 55.0%
!! CAGGTTGGTGAGCTTGATGG+AGG - chr2.2:5017070-5017089 MS.gene052092:CDS 55.0%
!! GCCCACATAAGGGTTGGTCA+TGG + chr2.2:5016141-5016160 None:intergenic 55.0%
!! TGGCTTTAGGCAACTCCCAC+TGG - chr2.2:5018104-5018123 MS.gene052092:CDS 55.0%
AGGGTGGACCACCCAAGTTG+AGG - chr2.2:5017539-5017558 MS.gene052092:CDS 60.0%
GCAGTCTGCGGTTTCCGTTG+AGG - chr2.2:5016946-5016965 MS.gene052092:CDS 60.0%
GCGATTGAAGCGCGCATGGT+TGG - chr2.2:5017280-5017299 MS.gene052092:CDS 60.0%
GGATGGGCCCACATAAGGGT+TGG + chr2.2:5016147-5016166 None:intergenic 60.0%
TGCCGGTCGAAAGCCAGCTT+GGG + chr2.2:5017584-5017603 None:intergenic 60.0%
!! CGCATGGTTGGTGCTGGTAC+CGG - chr2.2:5017292-5017311 MS.gene052092:CDS 60.0%
!! TCCCCAAGCTGGCTTTCGAC+CGG - chr2.2:5017579-5017598 MS.gene052092:CDS 60.0%
CTGCCGGTCGAAAGCCAGCT+TGG + chr2.2:5017585-5017604 None:intergenic 65.0%
GCCGGTCGAAAGCCAGCTTG+GGG + chr2.2:5017583-5017602 None:intergenic 65.0%
! GAAGCGCGCATGGTTGGTGC+TGG - chr2.2:5017286-5017305 MS.gene052092:CDS 65.0%


Chromosome Type Strat End Strand Name
chr2.2 gene 5016038 5018269 5016038 ID=MS.gene052092
chr2.2 mRNA 5016038 5018269 5016038 ID=MS.gene052092.t1;Parent=MS.gene052092
chr2.2 exon 5016038 5018269 5016038 ID=MS.gene052092.t1.exon1;Parent=MS.gene052092.t1
chr2.2 CDS 5016038 5018269 5016038 ID=cds.MS.gene052092.t1;Parent=MS.gene052092.t1
Gene Sequence

>MS.gene052092

ATGGATCCGAACTTTGTCGGATTCGAAACAACCTACAAATTCGATGACCATGGTAATCTAATTCTTCTCTCTGATCCAAATCCAAACCTTAACGATTTCACCATGACCAACCCTTATGTGGGCCCATCCAATTCGGAGCCACTCGTTTTTTCTTCTGATGCAACCAAAGATTCTACCTTTGAAGATGCTGATTTTTCAGAAACTGTGAAATATATAAGCCAGATTCTAATGGAAGAAGATTTTGAACAAAAACCATGCATGTGTTATGACCCACTTAGTCTTCAACATACTGAGAAAATTTTCTTTGATGCTTTGGAATCAAATTTGCCTCTTTCACCTAATCAACACCCTCTTGATGTTCTTGAGATTCCTAGTAGCAATTGTTGTGTTCCTACTGATTCTGGTAATAGTTCTAGTTCTAATGAGTTAAAGCCTCTTTCACCTGATACACCAGTTTCTGGTGGTGATTCTGGTTTTAATTCAGTGAAGTCTCAGTTTATTGTTCCAAATCATGGTTTCAGTTTGAGTAATAGTAATATTAGTGATGGTGTTTTTGATTTGGATTCTTCTGAGACTAGGGTTATGGCTCAGAATATTTTTAGTGATGCTGATTCTATTTTGCAGTTTAGAAAAGGGTTAGAGGAAGCTAGCAAGTTTCTTCCTCAAAAAGCTCAGCTTTTTACTGGTTTTGAGAATGCTAGTGATAGTTTAGTGTCTCATGAGCCTAAGGGTAGGGTTGGAGTGATCAAGATGGAGGGTGGTGTTAGGGAGAACTCGAATTCGAGTTATTCAAGTTCAAATTTGAATTCGGGTTATTCGAGTTCAAATTCGAATTCAAATGGTTTGTTGAAGAGTAGAAAGAATCACGAGCGTCAAGAAAGTGACGATGAAGAAGGAAGAAGTAACAAGCAGTCTGCGGTTTCCGTTGAGGAGAGTGAAATATCTGATATGTTTGATAGGGTTTTGCTTAGTGTTGAAAACGTGCCGCTGTGTGCTGAACAAAAGGATGGATCAGTGGTGGAAAGTAGAACTCAGGTTGGTGAGCTTGATGGAGGGAAGGCACATACAAAGAAACAAGGGAGGAAGAAGGAAACTGTGGATTTGAGGACCCTTTTGGTTCTTTGTGCACAAGCTGTGTCTGCTAATGACAATAGGACTGCTAATGAATTGTTGAGGCAGATTAGGAAGCATTCTTCTCCTTCAGGTGATGCATCACAGAGAATGGCTCATTACTTTGCGAATGCGATTGAAGCGCGCATGGTTGGTGCTGGTACCGGTACACAAATATTATATATGAGCCAAAAGATGTTTAGTGCTGCTGATTTCTTGAAAGCTTACCAAGTTTTTATCTCTGCTTGCCCTTTCAAAAAATTTGCACATTTCTTTGCAAATAAAATGATTTTGAAAACAGCTGAAAAGGCAGAAACCCTTCACATTATTGATTTTGGTATCTTATATGGTTTCCAGTGGCCAATTCTTATTAAGTTTTTGTCAAAAGTAGAGGGTGGACCACCCAAGTTGAGGATCACAGGAATTGAGTATCCCCAAGCTGGCTTTCGACCGGCAGAGAGAATAGAGGAAACTGGCCGGCGTTTAGCTAACTATTGTGAACGTTTCAATGTTTCCTTCGAATACAAGGCCATACCATCCCGAAACTGGGAAACCATTCAAATTGAAGACCTTAATATTAAGAGCAATGAGGTAGTGGCTGTGAACTGTTTGGTAAGGTTTAAGAATTTACATGATGAGACAATCGACGTGAACAGTCCTAAAGATGCAGTTCTGAAGTTAATCAGGAAGATAAATCCGCGCATATTTGTTCAATCCATAGTAAATGGGTCTTATAATGCCCCTTTCTTTTCCACACGCTTCAAGGAGTCACTTTTCCATTATTCTGCAATGTTTGATATGTATGATACTCTCATATCCCGTGAAAATGAATGGAGGTCGATGATTGAGAGAGAGTTTTTGGGCCGGGAGATTATGAATGTTGTAGCATGTGAAGGTTTTGAGAGGGTTGAGAGGCCCGAGACATACAAACAGTGGCAGGTTAGGAATCTAAGGGCTGGCTTTAGGCAACTCCCACTGGATAAGGAGGTAATGGCCAGATTTAGAGATAGGCTAAGAGAATGGTACCATAAAGATTTTGTCTTTGATGAAGATAACAACTGGATGCTTCAAGGTTGGAAAGGCCGAATTACGTATGCTTCGGCTGGTTGGGTGCCAGCATAA
Protein sequence

>MS.gene052092.t1

MDPNFVGFETTYKFDDHGNLILLSDPNPNLNDFTMTNPYVGPSNSEPLVFSSDATKDSTFEDADFSETVKYISQILMEEDFEQKPCMCYDPLSLQHTEKIFFDALESNLPLSPNQHPLDVLEIPSSNCCVPTDSGNSSSSNELKPLSPDTPVSGGDSGFNSVKSQFIVPNHGFSLSNSNISDGVFDLDSSETRVMAQNIFSDADSILQFRKGLEEASKFLPQKAQLFTGFENASDSLVSHEPKGRVGVIKMEGGVRENSNSSYSSSNLNSGYSSSNSNSNGLLKSRKNHERQESDDEEGRSNKQSAVSVEESEISDMFDRVLLSVENVPLCAEQKDGSVVESRTQVGELDGGKAHTKKQGRKKETVDLRTLLVLCAQAVSANDNRTANELLRQIRKHSSPSGDASQRMAHYFANAIEARMVGAGTGTQILYMSQKMFSAADFLKAYQVFISACPFKKFAHFFANKMILKTAEKAETLHIIDFGILYGFQWPILIKFLSKVEGGPPKLRITGIEYPQAGFRPAERIEETGRRLANYCERFNVSFEYKAIPSRNWETIQIEDLNIKSNEVVAVNCLVRFKNLHDETIDVNSPKDAVLKLIRKINPRIFVQSIVNGSYNAPFFSTRFKESLFHYSAMFDMYDTLISRENEWRSMIEREFLGREIMNVVACEGFERVERPETYKQWQVRNLRAGFRQLPLDKEVMARFRDRLREWYHKDFVFDEDNNWMLQGWKGRITYASAGWVPA