AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene052094

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene052094.t1 MTR_2g097410 89.721 574 20 1 1 535 1 574 0.0 1053
MS.gene052094.t1 MTR_4g064150 55.472 530 210 11 21 535 48 566 0.0 531
MS.gene052094.t1 MTR_4g064120 55.738 488 161 9 54 535 21 459 1.13e-173 504
MS.gene052094.t1 MTR_4g064180 55.328 488 163 9 54 535 21 459 3.49e-169 493
MS.gene052094.t1 MTR_4g064160 45.318 534 235 15 35 535 8 517 2.08e-128 390
MS.gene052094.t1 MTR_7g062120 41.412 524 240 16 61 535 68 573 1.98e-111 348
MS.gene052094.t1 MTR_4g064200 40.461 477 206 11 69 535 74 482 5.10e-91 292
MS.gene052094.t1 MTR_2g097473 38.413 479 237 12 69 535 55 487 1.99e-89 288
MS.gene052094.t1 MTR_2g097463 38.254 481 236 11 69 535 55 488 2.66e-89 288
MS.gene052094.t1 MTR_2g097467 38.557 485 228 15 69 535 55 487 6.93e-89 287
MS.gene052094.t1 MTR_2g097310 49.359 312 131 9 226 535 183 469 2.53e-84 274
MS.gene052094.t1 MTR_2g097390 50.000 276 122 7 263 535 210 472 1.19e-79 262
MS.gene052094.t1 MTR_2g097350 49.455 275 123 7 263 534 209 470 4.45e-77 255
MS.gene052094.t1 MTR_2g097380 44.906 265 106 5 271 535 183 407 5.51e-67 226
MS.gene052094.t1 MTR_7g074650 36.500 200 119 3 336 535 442 633 2.06e-33 135
MS.gene052094.t1 MTR_5g094450 35.514 214 123 4 328 533 157 363 3.05e-33 133
MS.gene052094.t1 MTR_8g065750 83.824 68 11 0 27 94 38 105 1.23e-32 121
MS.gene052094.t1 MTR_7g027190 32.618 233 118 6 327 535 295 512 1.21e-27 117
MS.gene052094.t1 MTR_3g056110 32.701 211 130 4 328 533 171 374 2.90e-27 115
MS.gene052094.t1 MTR_5g097480 30.769 208 138 3 328 533 173 376 6.44e-27 114
MS.gene052094.t1 MTR_1g069725 29.717 212 137 3 325 535 102 302 1.06e-26 113
MS.gene052094.t1 MTR_4g133660 32.381 210 135 4 327 533 170 375 1.22e-26 114
MS.gene052094.t1 MTR_3g065980 32.558 215 122 3 327 535 167 364 2.58e-26 113
MS.gene052094.t1 MTR_2g082090 30.288 208 139 3 328 533 208 411 7.11e-26 112
MS.gene052094.t1 MTR_5g009080 29.412 204 137 2 332 535 56 252 7.51e-25 108
MS.gene052094.t1 MTR_3g087300 85.455 55 8 0 297 351 154 208 1.70e-24 101
MS.gene052094.t1 MTR_3g089055 31.068 206 136 3 330 533 201 402 9.30e-24 105
MS.gene052094.t1 MTR_3g089055 31.068 206 136 3 330 533 196 397 1.06e-23 105
MS.gene052094.t1 MTR_2g026250 28.571 210 143 4 327 533 223 428 1.53e-23 105
MS.gene052094.t1 MTR_4g076020 30.769 208 111 4 336 535 88 270 2.02e-23 103
MS.gene052094.t1 MTR_4g076140 30.392 204 135 2 332 535 48 244 2.20e-23 103
MS.gene052094.t1 MTR_4g102790 29.245 212 139 4 328 535 288 492 2.32e-23 104
MS.gene052094.t1 MTR_1g029420 30.583 206 137 3 330 533 223 424 4.82e-23 103
MS.gene052094.t1 MTR_4g097080 30.769 208 141 2 330 535 131 337 5.02e-23 102
MS.gene052094.t1 MTR_4g077760 29.327 208 141 4 329 535 191 393 1.77e-22 101
MS.gene052094.t1 MTR_3g022830 30.846 201 132 2 333 533 26 219 2.70e-22 100
MS.gene052094.t1 MTR_5g015490 31.884 207 136 3 332 535 114 318 2.20e-21 97.8
MS.gene052094.t1 MTR_8g442410 32.569 218 130 6 327 533 150 361 1.69e-20 95.1
MS.gene052094.t1 MTR_5g058860 27.615 239 163 5 307 535 94 332 5.57e-20 93.6
MS.gene052094.t1 MTR_1g096030 30.660 212 127 7 332 535 80 279 4.83e-19 90.5
MS.gene052094.t1 MTR_2g089100 30.256 195 110 5 329 509 49 231 4.84e-19 90.1
MS.gene052094.t1 MTR_3g072710 27.468 233 154 5 317 535 105 336 6.44e-19 90.1
MS.gene052094.t1 MTR_2g099110 28.571 210 139 4 332 535 74 278 2.29e-18 88.2
MS.gene052094.t1 MTR_4g104020 28.634 227 139 7 321 533 138 355 4.10e-18 87.8
MS.gene052094.t1 MTR_2g034250 30.455 220 141 5 323 532 201 418 3.35e-17 85.1
MS.gene052094.t1 MTR_2g034260 29.412 221 142 6 323 532 201 418 9.49e-17 84.0
MS.gene052094.t1 MTR_2g034280 26.728 217 151 3 323 532 194 409 5.75e-15 78.2
MS.gene052094.t1 MTR_8g093070 24.658 219 148 7 320 535 127 331 2.40e-14 75.9
MS.gene052094.t1 MTR_4g095500 25.764 229 143 6 329 534 56 280 7.23e-14 74.3
MS.gene052094.t1 MTR_4g026485 26.471 204 132 5 337 533 274 466 7.76e-14 74.7
MS.gene052094.t1 MTR_8g020840 26.496 234 141 8 319 532 163 385 3.73e-13 72.4
MS.gene052094.t1 MTR_0092s0100 27.885 208 131 4 333 533 373 568 4.03e-13 72.4
MS.gene052094.t1 MTR_0092s0100 27.885 208 131 4 333 533 376 571 4.22e-13 72.4
MS.gene052094.t1 MTR_7g109580 26.852 216 137 6 327 532 184 388 3.59e-12 69.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene052094.t1 AT1G07530 44.767 516 234 10 68 535 86 598 5.84e-126 387
MS.gene052094.t1 AT2G29060 45.756 483 205 13 62 535 53 487 1.28e-119 367
MS.gene052094.t1 AT2G29060 45.791 487 236 13 62 535 53 524 1.00e-117 363
MS.gene052094.t1 AT2G29065 42.495 553 204 18 1 534 1 458 3.30e-108 337
MS.gene052094.t1 AT1G07520 42.505 487 228 9 69 535 70 524 1.33e-107 337
MS.gene052094.t1 AT1G07520 42.505 487 228 9 69 535 71 525 1.51e-107 337
MS.gene052094.t1 AT1G07520 50.140 357 152 6 194 535 15 360 3.65e-105 325
MS.gene052094.t1 AT1G07520 50.140 357 152 6 194 535 15 360 3.65e-105 325
MS.gene052094.t1 AT2G37650 39.364 503 248 15 61 535 61 534 9.36e-96 306
MS.gene052094.t1 AT2G37650 39.364 503 248 15 61 535 73 546 1.04e-95 306
MS.gene052094.t1 AT3G46600 48.921 278 129 6 258 535 148 412 8.58e-79 258
MS.gene052094.t1 AT3G46600 48.201 278 131 5 258 535 116 380 8.63e-79 258
MS.gene052094.t1 AT5G59450 44.079 304 165 4 234 535 129 429 1.87e-76 253
MS.gene052094.t1 AT3G46600 56.039 207 88 3 329 535 1 204 9.24e-72 234
MS.gene052094.t1 AT3G54220 35.714 224 135 3 314 535 275 491 1.90e-34 138
MS.gene052094.t1 AT5G66770 32.836 201 127 4 336 535 224 417 9.96e-28 117
MS.gene052094.t1 AT1G66350 33.810 210 125 4 327 535 150 346 1.63e-27 116
MS.gene052094.t1 AT1G50600 33.173 208 133 3 328 533 155 358 3.22e-27 115
MS.gene052094.t1 AT5G48150 29.258 229 157 2 305 533 99 322 3.87e-27 115
MS.gene052094.t1 AT5G48150 29.258 229 157 2 305 533 99 322 3.87e-27 115
MS.gene052094.t1 AT5G48150 29.258 229 157 2 305 533 99 322 3.87e-27 115
MS.gene052094.t1 AT5G48150 29.258 229 157 2 305 533 99 322 3.87e-27 115
MS.gene052094.t1 AT1G50600 33.173 208 133 3 328 533 226 429 5.76e-27 115
MS.gene052094.t1 AT1G50600 33.173 208 133 3 328 533 230 433 6.72e-27 115
MS.gene052094.t1 AT1G21450 30.070 286 187 6 253 533 147 424 5.85e-26 112
MS.gene052094.t1 AT2G01570 33.971 209 127 5 327 533 219 418 1.14e-25 111
MS.gene052094.t1 AT3G03450 30.332 211 139 5 327 535 178 382 7.50e-25 108
MS.gene052094.t1 AT5G41920 29.245 212 141 2 327 535 38 243 2.56e-24 105
MS.gene052094.t1 AT2G04890 31.068 206 133 3 328 533 49 245 5.34e-24 104
MS.gene052094.t1 AT4G17230 34.286 210 130 4 327 533 153 357 7.65e-24 105
MS.gene052094.t1 AT4G17230 34.286 210 130 4 327 533 153 357 7.65e-24 105
MS.gene052094.t1 AT3G50650 30.570 193 119 4 347 535 190 371 1.18e-23 105
MS.gene052094.t1 AT1G14920 33.175 211 130 5 327 535 167 368 1.80e-23 104
MS.gene052094.t1 AT5G17490 31.915 188 111 4 327 511 155 328 5.73e-23 102
MS.gene052094.t1 AT1G50420 28.431 204 137 4 332 533 57 253 6.40e-22 99.4
MS.gene052094.t1 AT1G63100 30.047 213 135 6 328 535 248 451 3.81e-19 91.7
MS.gene052094.t1 AT1G63100 30.047 213 135 6 328 535 273 476 4.16e-19 91.3
MS.gene052094.t1 AT4G37650 26.636 214 148 3 331 535 145 358 2.38e-18 88.6
MS.gene052094.t1 AT3G49950 29.167 216 136 7 332 534 30 241 9.94e-18 85.9
MS.gene052094.t1 AT4G08250 24.615 260 175 9 287 535 64 313 3.99e-14 75.1
MS.gene052094.t1 AT1G55580 26.984 252 127 8 329 535 41 280 3.20e-12 68.9

Find 118 sgRNAs with CRISPR-Local

Find 145 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACCCTTCACATTATTGATTT+TGG 0.112468 2.3:-5585185 MS.gene052094:CDS
CCAGTTTCTGGTGGTGATTC+TGG 0.150366 2.3:-5586160 MS.gene052094:CDS
TCACCTGATACACCAGTTTC+TGG 0.198731 2.3:-5586172 MS.gene052094:CDS
TTGAATGGTTTCCCAGTTTC+GGG 0.204080 2.3:+5584962 None:intergenic
TGTTGTGTTCCTACTGATTC+TGG 0.235374 2.3:-5586229 MS.gene052094:CDS
ATCTTCAAAGGTAGAATCTT+TGG 0.257325 2.3:+5586447 None:intergenic
CCTCATTGCTCTTAATATTA+AGG 0.263212 2.3:+5584931 None:intergenic
TTTGAATGGTTTCCCAGTTT+CGG 0.285892 2.3:+5584961 None:intergenic
AGGCCATACCATCCCGAAAC+TGG 0.299357 2.3:-5584974 MS.gene052094:CDS
CAGCAGCACTAAACATCTTT+TGG 0.300712 2.3:+5585312 None:intergenic
AGGAAGCATTCTTCTCCTTC+AGG 0.315645 2.3:-5585428 MS.gene052094:CDS
TGCCGGTCGAAAGCCAGCTT+GGG 0.317241 2.3:+5585067 None:intergenic
CTCAAACTGAAACCATGATT+TGG 0.321027 2.3:+5586106 None:intergenic
AAATCGTTAAGGTTTGGATT+TGG 0.332771 2.3:+5586535 None:intergenic
AATCTTCTTCCATTAGAATC+TGG 0.335576 2.3:+5586392 None:intergenic
CCACCAGAAACTGGTGTATC+AGG 0.337940 2.3:+5586169 None:intergenic
GCAGTTTAGAAAAGGGTTAG+AGG 0.342843 2.3:-5585990 MS.gene052094:CDS
TTCTTCTGAGACTAGGGTTA+TGG 0.353283 2.3:-5586047 MS.gene052094:CDS
TGTGGATTTGAGGACCCTTT+TGG 0.355547 2.3:-5585516 MS.gene052094:CDS
CAGTTTATTGTTCCAAATCA+TGG 0.358564 2.3:-5586118 MS.gene052094:CDS
AAATATCTGATATGTTTGAT+AGG 0.361784 2.3:-5585673 MS.gene052094:CDS
ATGAATTGTTGAGGCAGATT+AGG 0.382955 2.3:-5585448 MS.gene052094:CDS
ACATCAAGAGGGTGTTGATT+AGG 0.390520 2.3:+5586274 None:intergenic
GTTTCGAATCCGACAAAGTT+CGG 0.391177 2.3:+5586604 None:intergenic
CTGCCGGTCGAAAGCCAGCT+TGG 0.397922 2.3:+5585066 None:intergenic
ATTAAGGTCTTCAATTTGAA+TGG 0.400958 2.3:+5584947 None:intergenic
CAATGTTTCCTTCGAATACA+AGG 0.408276 2.3:-5584994 MS.gene052094:CDS
ATGGTGAAATCGTTAAGGTT+TGG 0.408700 2.3:+5586529 None:intergenic
GAATTGGATGGGCCCACATA+AGG 0.415523 2.3:+5586499 None:intergenic
CCAGAATCACCACCAGAAAC+TGG 0.422848 2.3:+5586160 None:intergenic
CTGTGTCTGCTAATGACAAT+AGG 0.426533 2.3:-5585478 MS.gene052094:CDS
ATTTGGATTCTTCTGAGACT+AGG 0.434021 2.3:-5586054 MS.gene052094:CDS
ATATATAAGCCAGATTCTAA+TGG 0.435212 2.3:-5586401 MS.gene052094:CDS
TTTGGATTCTTCTGAGACTA+GGG 0.441086 2.3:-5586053 MS.gene052094:CDS
CACCATGACCAACCCTTATG+TGG 0.441330 2.3:-5586512 MS.gene052094:CDS
ACTCAGGTTGGTGAGCTTGA+TGG 0.441788 2.3:-5585581 MS.gene052094:CDS
TTCCCAGTTTCGGGATGGTA+TGG 0.447770 2.3:+5584971 None:intergenic
CGCATGGTTGGTGCTGGTAC+CGG 0.452661 2.3:-5585356 MS.gene052094:CDS
TGGTCATGGTGAAATCGTTA+AGG 0.453510 2.3:+5586524 None:intergenic
AATTCCTGTGATCCTCAACT+TGG 0.460110 2.3:+5585097 None:intergenic
TTTAGTGTCTCATGAGCCTA+AGG 0.471760 2.3:-5585903 MS.gene052094:CDS
ACCATGGTCATCGAATTTGT+AGG 0.476706 2.3:+5586579 None:intergenic
GCAGAGAGAATAGAGGAAAC+TGG 0.479525 2.3:-5585047 MS.gene052094:CDS
AGAAGGAAACTGTGGATTTG+AGG 0.481509 2.3:-5585526 MS.gene052094:CDS
GCTATGGATCCGAACTTTGT+CGG 0.481965 2.3:-5586613 MS.gene052094:CDS
TTATGTGGGCCCATCCAATT+CGG 0.491734 2.3:-5586497 MS.gene052094:CDS
AATTGGATGGGCCCACATAA+GGG 0.496632 2.3:+5586500 None:intergenic
AATATCTGATATGTTTGATA+GGG 0.504258 2.3:-5585672 MS.gene052094:CDS
GGAACACAACAATTGCTACT+AGG 0.506690 2.3:+5586241 None:intergenic
GGGTGTTGATTAGGTGAAAG+AGG 0.507344 2.3:+5586283 None:intergenic
TATTAAGAGCAATGAGGTAG+TGG 0.510345 2.3:-5584925 MS.gene052094:CDS
GTTTCCTCTATTCTCTCTGC+CGG 0.517130 2.3:+5585050 None:intergenic
GTCTCATGAGCCTAAGGGTA+GGG 0.518003 2.3:-5585897 MS.gene052094:intron
TCCCCAAGCTGGCTTTCGAC+CGG 0.518500 2.3:-5585069 MS.gene052094:CDS
ACGAGTGGCTCCGAATTGGA+TGG 0.521140 2.3:+5586487 None:intergenic
GCCGCTGTGTGCTGAACAAA+AGG 0.522967 2.3:-5585627 MS.gene052094:CDS
CTCTGTGATGCATCACCTGA+AGG 0.529263 2.3:+5585413 None:intergenic
AGGTGATGCATCACAGAGAA+TGG 0.535230 2.3:-5585408 MS.gene052094:CDS
TACCAAAATCAATAATGTGA+AGG 0.537288 2.3:+5585183 None:intergenic
GCGATTGAAGCGCGCATGGT+TGG 0.539201 2.3:-5585368 MS.gene052094:CDS
AAAGAAACAAGGGAGGAAGA+AGG 0.539726 2.3:-5585543 MS.gene052094:CDS
ACCAAAATCAATAATGTGAA+GGG 0.539883 2.3:+5585184 None:intergenic
TCAGTATGTTGAAGACTAAG+TGG 0.541144 2.3:+5586340 None:intergenic
GAAGCGCGCATGGTTGGTGC+TGG 0.541418 2.3:-5585362 MS.gene052094:CDS
CCACCCAAGTTGAGGATCAC+AGG 0.542256 2.3:-5585101 MS.gene052094:CDS
CATATATAATATTTGTGTAC+CGG 0.543480 2.3:+5585337 None:intergenic
GGAATTGAGTATCCCCAAGC+TGG 0.546615 2.3:-5585080 MS.gene052094:CDS
GTATCTTATATGGTTTCCAG+TGG 0.547028 2.3:-5585163 MS.gene052094:CDS
GGTAGTGGCTGTGAACTGTT+TGG 0.549486 2.3:-5584910 None:intergenic
AGTAATAGTAATATTAGTGA+TGG 0.551444 2.3:-5586085 MS.gene052094:CDS
CTTGTGCACAAAGAACCAAA+AGG 0.555209 2.3:+5585501 None:intergenic
ACCATGACCAACCCTTATGT+GGG 0.562138 2.3:-5586511 MS.gene052094:CDS
GGCCATACCATCCCGAAACT+GGG 0.564944 2.3:-5584973 MS.gene052094:CDS
ATTCCTGTGATCCTCAACTT+GGG 0.566789 2.3:+5585098 None:intergenic
TCGACCGGCAGAGAGAATAG+AGG 0.567756 2.3:-5585054 MS.gene052094:CDS
ACTGGTGTATCAGGTGAAAG+AGG 0.568315 2.3:+5586178 None:intergenic
ACTTAATAAGAATTGGCCAC+TGG 0.572363 2.3:+5585147 None:intergenic
CAAGAAAGTGACGATGAAGA+AGG 0.574577 2.3:-5585737 MS.gene052094:CDS
TTGTGCACAAAGAACCAAAA+GGG 0.580206 2.3:+5585502 None:intergenic
ATGGTTTCCCAGTTTCGGGA+TGG 0.581937 2.3:+5584966 None:intergenic
CTGTGTGCTGAACAAAAGGA+TGG 0.582319 2.3:-5585623 MS.gene052094:CDS
CAGGTTGGTGAGCTTGATGG+AGG 0.586798 2.3:-5585578 MS.gene052094:CDS
GGATGGGCCCACATAAGGGT+TGG 0.592672 2.3:+5586504 None:intergenic
CCTGTGATCCTCAACTTGGG+TGG 0.597902 2.3:+5585101 None:intergenic
TGGTGAGCTTGATGGAGGGA+AGG 0.598425 2.3:-5585573 MS.gene052094:CDS
GGAATCTCAAGAACATCAAG+AGG 0.598639 2.3:+5586262 None:intergenic
CGAGTGGCTCCGAATTGGAT+GGG 0.599028 2.3:+5586488 None:intergenic
GAACTATTACCAGAATCAGT+AGG 0.607462 2.3:+5586220 None:intergenic
GAATGCGATTGAAGCGCGCA+TGG 0.609128 2.3:-5585372 MS.gene052094:CDS
TGTCTCATGAGCCTAAGGGT+AGG 0.616168 2.3:-5585898 MS.gene052094:CDS
CAGTATGTTGAAGACTAAGT+GGG 0.617757 2.3:+5586341 None:intergenic
GCCCACATAAGGGTTGGTCA+TGG 0.617923 2.3:+5586510 None:intergenic
TGGTATGGCCTTGTATTCGA+AGG 0.618500 2.3:+5584986 None:intergenic
AGATATTTCACTCTCCTCAA+CGG 0.618626 2.3:+5585688 None:intergenic
AGTGGTGGAAAGTAGAACTC+AGG 0.620773 2.3:-5585597 MS.gene052094:CDS
AAGGCACATACAAAGAAACA+AGG 0.622167 2.3:-5585554 MS.gene052094:CDS
GCCGGTCGAAAGCCAGCTTG+GGG 0.629257 2.3:+5585068 None:intergenic
GCAGTCTGCGGTTTCCGTTG+AGG 0.630810 2.3:-5585702 MS.gene052094:CDS
ACAAAAGGATGGATCAGTGG+TGG 0.631801 2.3:-5585612 MS.gene052094:CDS
AGGTTGGTGAGCTTGATGGA+GGG 0.634801 2.3:-5585577 MS.gene052094:CDS
AGAGAATAGAGGAAACTGGC+CGG 0.638860 2.3:-5585043 MS.gene052094:CDS
CACAATAGTTAGCTAAACGC+CGG 0.640868 2.3:+5585024 None:intergenic
ACCTACAAATTCGATGACCA+TGG 0.643298 2.3:-5586580 MS.gene052094:CDS
ATCACTCCAACCCTACCCTT+AGG 0.645813 2.3:+5585887 None:intergenic
TTAGTGTCTCATGAGCCTAA+GGG 0.648279 2.3:-5585902 MS.gene052094:CDS
AGAGAAGAATTAGATTACCA+TGG 0.658943 2.3:+5586563 None:intergenic
GGACTGCTAATGAATTGTTG+AGG 0.659007 2.3:-5585457 MS.gene052094:CDS
CCTGATACACCAGTTTCTGG+TGG 0.666329 2.3:-5586169 MS.gene052094:CDS
GTGGAAAGTAGAACTCAGGT+TGG 0.667091 2.3:-5585593 MS.gene052094:CDS
AGTGGGTCATAACACATGCA+TGG 0.667506 2.3:+5586358 None:intergenic
AGGGTGGACCACCCAAGTTG+AGG 0.670566 2.3:-5585109 MS.gene052094:CDS
CCTTAATATTAAGAGCAATG+AGG 0.678676 2.3:-5584931 MS.gene052094:CDS
AAGAAGTAACAAGCAGTCTG+CGG 0.680051 2.3:-5585714 MS.gene052094:CDS
GAATCTCAAGAACATCAAGA+GGG 0.681038 2.3:+5586263 None:intergenic
CACATACAAAGAAACAAGGG+AGG 0.681274 2.3:-5585550 MS.gene052094:CDS
AGGGAGGAAGAAGGAAACTG+TGG 0.685784 2.3:-5585534 MS.gene052094:CDS
TGAACAAAAGGATGGATCAG+TGG 0.692488 2.3:-5585615 MS.gene052094:CDS
AGGCACATACAAAGAAACAA+GGG 0.704355 2.3:-5585553 MS.gene052094:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATATCTGATATGTTTGAT+AGG - chr2.3:5585848-5585867 MS.gene052094:intron 20.0%
!! AATATCTGATATGTTTGATA+GGG - chr2.3:5585849-5585868 MS.gene052094:intron 20.0%
!! AGTAATAGTAATATTAGTGA+TGG - chr2.3:5585436-5585455 MS.gene052094:CDS 20.0%
!! CATATATAATATTTGTGTAC+CGG + chr2.3:5586187-5586206 None:intergenic 20.0%
!! GACAAAAACTTAATAAGAAT+TGG + chr2.3:5586384-5586403 None:intergenic 20.0%
!!! AAATGTGCAAATTTTTTGAA+AGG + chr2.3:5586273-5586292 None:intergenic 20.0%
!!! AATGTGCAAATTTTTTGAAA+GGG + chr2.3:5586272-5586291 None:intergenic 20.0%
!!! ATTGATTTTGGTATCTTATA+TGG - chr2.3:5586348-5586367 MS.gene052094:CDS 20.0%
!!! TTCAAGTTCAAATTTGAATT+CGG - chr2.3:5585699-5585718 MS.gene052094:CDS 20.0%
! ACCAAAATCAATAATGTGAA+GGG + chr2.3:5586340-5586359 None:intergenic 25.0%
! AGTTCAAATTCGAATTCAAA+TGG - chr2.3:5585730-5585749 MS.gene052094:CDS 25.0%
! ATATATAAGCCAGATTCTAA+TGG - chr2.3:5585120-5585139 MS.gene052094:CDS 25.0%
! ATTAAGGTCTTCAATTTGAA+TGG + chr2.3:5586577-5586596 None:intergenic 25.0%
! TACCAAAATCAATAATGTGA+AGG + chr2.3:5586341-5586360 None:intergenic 25.0%
! TCAAGTTCAAATTTGAATTC+GGG - chr2.3:5585700-5585719 MS.gene052094:CDS 25.0%
!! AAGTTTTTGTCAAAAGTAGA+GGG - chr2.3:5586393-5586412 MS.gene052094:CDS 25.0%
!! CTATTTTGCAGTTTAGAAAA+GGG - chr2.3:5585524-5585543 MS.gene052094:CDS 25.0%
!! GAAAATTTTCTTTGATGCTT+TGG - chr2.3:5585204-5585223 MS.gene052094:CDS 25.0%
!! TAAGTTTTTGTCAAAAGTAG+AGG - chr2.3:5586392-5586411 MS.gene052094:CDS 25.0%
!! TCTATTTTGCAGTTTAGAAA+AGG - chr2.3:5585523-5585542 MS.gene052094:CDS 25.0%
AAATCGTTAAGGTTTGGATT+TGG + chr2.3:5584989-5585008 None:intergenic 30.0%
AATCTTCTTCCATTAGAATC+TGG + chr2.3:5585132-5585151 None:intergenic 30.0%
AGAGAAGAATTAGATTACCA+TGG + chr2.3:5584961-5584980 None:intergenic 30.0%
ATCTTCAAAGGTAGAATCTT+TGG + chr2.3:5585077-5585096 None:intergenic 30.0%
CAGTTTATTGTTCCAAATCA+TGG - chr2.3:5585403-5585422 MS.gene052094:CDS 30.0%
CCTCATTGCTCTTAATATTA+AGG + chr2.3:5586593-5586612 None:intergenic 30.0%
CCTTAATATTAAGAGCAATG+AGG - chr2.3:5586590-5586609 MS.gene052094:CDS 30.0%
TGAAAAATCAGCATCTTCAA+AGG + chr2.3:5585089-5585108 None:intergenic 30.0%
!! GATTTTGAAAACAGCTGAAA+AGG - chr2.3:5586308-5586327 MS.gene052094:CDS 30.0%
!! TAGTGATGGTGTTTTTGATT+TGG - chr2.3:5585450-5585469 MS.gene052094:CDS 30.0%
!!! ACCCTTCACATTATTGATTT+TGG - chr2.3:5586336-5586355 MS.gene052094:CDS 30.0%
AAGGCACATACAAAGAAACA+AGG - chr2.3:5585967-5585986 MS.gene052094:CDS 35.0%
ACTTAATAAGAATTGGCCAC+TGG + chr2.3:5586377-5586396 None:intergenic 35.0%
AGATATTTCACTCTCCTCAA+CGG + chr2.3:5585836-5585855 None:intergenic 35.0%
AGGCACATACAAAGAAACAA+GGG - chr2.3:5585968-5585987 MS.gene052094:CDS 35.0%
ATGAATTGTTGAGGCAGATT+AGG - chr2.3:5586073-5586092 MS.gene052094:CDS 35.0%
ATGGTGAAATCGTTAAGGTT+TGG + chr2.3:5584995-5585014 None:intergenic 35.0%
CAATGTTTCCTTCGAATACA+AGG - chr2.3:5586527-5586546 MS.gene052094:CDS 35.0%
CAGTATGTTGAAGACTAAGT+GGG + chr2.3:5585183-5585202 None:intergenic 35.0%
CTCAAACTGAAACCATGATT+TGG + chr2.3:5585418-5585437 None:intergenic 35.0%
GAACTATTACCAGAATCAGT+AGG + chr2.3:5585304-5585323 None:intergenic 35.0%
GAATCTCAAGAACATCAAGA+GGG + chr2.3:5585261-5585280 None:intergenic 35.0%
GTATCTTATATGGTTTCCAG+TGG - chr2.3:5586358-5586377 MS.gene052094:CDS 35.0%
TATTAAGAGCAATGAGGTAG+TGG - chr2.3:5586596-5586615 MS.gene052094:CDS 35.0%
TCAGTATGTTGAAGACTAAG+TGG + chr2.3:5585184-5585203 None:intergenic 35.0%
TTGTGCACAAAGAACCAAAA+GGG + chr2.3:5586022-5586041 None:intergenic 35.0%
TTTGAATGGTTTCCCAGTTT+CGG + chr2.3:5586563-5586582 None:intergenic 35.0%
! CAAAAAGCTCAGCTTTTTAC+TGG - chr2.3:5585574-5585593 MS.gene052094:CDS 35.0%
! GTAAAAAGCTGAGCTTTTTG+AGG + chr2.3:5585574-5585593 None:intergenic 35.0%
! TTTTTGTCAAAAGTAGAGGG+TGG - chr2.3:5586396-5586415 MS.gene052094:CDS 35.0%
!! ATTTGGATTCTTCTGAGACT+AGG - chr2.3:5585467-5585486 MS.gene052094:CDS 35.0%
!! TTTGGATTCTTCTGAGACTA+GGG - chr2.3:5585468-5585487 MS.gene052094:CDS 35.0%
AAAGAAACAAGGGAGGAAGA+AGG - chr2.3:5585978-5585997 MS.gene052094:CDS 40.0%
AAGAAGTAACAAGCAGTCTG+CGG - chr2.3:5585807-5585826 MS.gene052094:intron 40.0%
AATTCCTGTGATCCTCAACT+TGG + chr2.3:5586427-5586446 None:intergenic 40.0%
ACCATGGTCATCGAATTTGT+AGG + chr2.3:5584945-5584964 None:intergenic 40.0%
ACCTACAAATTCGATGACCA+TGG - chr2.3:5584941-5584960 MS.gene052094:CDS 40.0%
AGAAGGAAACTGTGGATTTG+AGG - chr2.3:5585995-5586014 MS.gene052094:CDS 40.0%
ATTCCTGTGATCCTCAACTT+GGG + chr2.3:5586426-5586445 None:intergenic 40.0%
CAAGAAAGTGACGATGAAGA+AGG - chr2.3:5585784-5585803 MS.gene052094:intron 40.0%
CACAATAGTTAGCTAAACGC+CGG + chr2.3:5586500-5586519 None:intergenic 40.0%
CACATACAAAGAAACAAGGG+AGG - chr2.3:5585971-5585990 MS.gene052094:CDS 40.0%
CTGTGTCTGCTAATGACAAT+AGG - chr2.3:5586043-5586062 MS.gene052094:CDS 40.0%
CTTGTGCACAAAGAACCAAA+AGG + chr2.3:5586023-5586042 None:intergenic 40.0%
GCAGTTTAGAAAAGGGTTAG+AGG - chr2.3:5585531-5585550 MS.gene052094:CDS 40.0%
GCATCAGAAGAAAAAACGAG+TGG + chr2.3:5585052-5585071 None:intergenic 40.0%
GGAACACAACAATTGCTACT+AGG + chr2.3:5585283-5585302 None:intergenic 40.0%
GGAATCTCAAGAACATCAAG+AGG + chr2.3:5585262-5585281 None:intergenic 40.0%
GGACTGCTAATGAATTGTTG+AGG - chr2.3:5586064-5586083 MS.gene052094:CDS 40.0%
GGCAAGCAGAGATAAAAACT+TGG + chr2.3:5586251-5586270 None:intergenic 40.0%
GTTTCGAATCCGACAAAGTT+CGG + chr2.3:5584920-5584939 None:intergenic 40.0%
TGAACAAAAGGATGGATCAG+TGG - chr2.3:5585906-5585925 MS.gene052094:CDS 40.0%
TGGTCATGGTGAAATCGTTA+AGG + chr2.3:5585000-5585019 None:intergenic 40.0%
TTAGTGTCTCATGAGCCTAA+GGG - chr2.3:5585619-5585638 MS.gene052094:CDS 40.0%
TTGAATGGTTTCCCAGTTTC+GGG + chr2.3:5586562-5586581 None:intergenic 40.0%
TTTAGTGTCTCATGAGCCTA+AGG - chr2.3:5585618-5585637 MS.gene052094:CDS 40.0%
! CAGCAGCACTAAACATCTTT+TGG + chr2.3:5586212-5586231 None:intergenic 40.0%
!! ACATCAAGAGGGTGTTGATT+AGG + chr2.3:5585250-5585269 None:intergenic 40.0%
!! TGTTGTGTTCCTACTGATTC+TGG - chr2.3:5585292-5585311 MS.gene052094:CDS 40.0%
!! TTCTTCTGAGACTAGGGTTA+TGG - chr2.3:5585474-5585493 MS.gene052094:CDS 40.0%
AAAAACGAGTGGCTCCGAAT+TGG + chr2.3:5585041-5585060 None:intergenic 45.0%
AATTGGATGGGCCCACATAA+GGG + chr2.3:5585024-5585043 None:intergenic 45.0%
ACAAAAGGATGGATCAGTGG+TGG - chr2.3:5585909-5585928 MS.gene052094:CDS 45.0%
ACCATGACCAACCCTTATGT+GGG - chr2.3:5585010-5585029 MS.gene052094:CDS 45.0%
ACTGGTGTATCAGGTGAAAG+AGG + chr2.3:5585346-5585365 None:intergenic 45.0%
AGAGAATAGAGGAAACTGGC+CGG - chr2.3:5586478-5586497 MS.gene052094:CDS 45.0%
AGGTGATGCATCACAGAGAA+TGG - chr2.3:5586113-5586132 MS.gene052094:CDS 45.0%
AGTGGGTCATAACACATGCA+TGG + chr2.3:5585166-5585185 None:intergenic 45.0%
CTGTGTGCTGAACAAAAGGA+TGG - chr2.3:5585898-5585917 MS.gene052094:CDS 45.0%
GCAGAGAGAATAGAGGAAAC+TGG - chr2.3:5586474-5586493 MS.gene052094:CDS 45.0%
GTGGAAAGTAGAACTCAGGT+TGG - chr2.3:5585928-5585947 MS.gene052094:CDS 45.0%
GTTGGAGTGATCAAGATGGA+GGG - chr2.3:5585646-5585665 MS.gene052094:CDS 45.0%
GTTTCCTCTATTCTCTCTGC+CGG + chr2.3:5586474-5586493 None:intergenic 45.0%
TAGGGTTGGAGTGATCAAGA+TGG - chr2.3:5585642-5585661 MS.gene052094:CDS 45.0%
TCACCTGATACACCAGTTTC+TGG - chr2.3:5585349-5585368 MS.gene052094:CDS 45.0%
TTATGTGGGCCCATCCAATT+CGG - chr2.3:5585024-5585043 MS.gene052094:CDS 45.0%
! AGTGGTGGAAAGTAGAACTC+AGG - chr2.3:5585924-5585943 MS.gene052094:CDS 45.0%
! TCCTTTTGTTCAGCACACAG+CGG + chr2.3:5585898-5585917 None:intergenic 45.0%
! TGTGGATTTGAGGACCCTTT+TGG - chr2.3:5586005-5586024 MS.gene052094:CDS 45.0%
!! AGGAAGCATTCTTCTCCTTC+AGG - chr2.3:5586093-5586112 MS.gene052094:CDS 45.0%
!! GGGTGTTGATTAGGTGAAAG+AGG + chr2.3:5585241-5585260 None:intergenic 45.0%
!! TGGTATGGCCTTGTATTCGA+AGG + chr2.3:5586538-5586557 None:intergenic 45.0%
AGGGAGGAAGAAGGAAACTG+TGG - chr2.3:5585987-5586006 MS.gene052094:CDS 50.0%
ATCACTCCAACCCTACCCTT+AGG + chr2.3:5585637-5585656 None:intergenic 50.0%
ATGGTTTCCCAGTTTCGGGA+TGG + chr2.3:5586558-5586577 None:intergenic 50.0%
CACCATGACCAACCCTTATG+TGG - chr2.3:5585009-5585028 MS.gene052094:CDS 50.0%
CCACCAGAAACTGGTGTATC+AGG + chr2.3:5585355-5585374 None:intergenic 50.0%
CCAGAATCACCACCAGAAAC+TGG + chr2.3:5585364-5585383 None:intergenic 50.0%
CTCTGTGATGCATCACCTGA+AGG + chr2.3:5586111-5586130 None:intergenic 50.0%
GAATTGGATGGGCCCACATA+AGG + chr2.3:5585025-5585044 None:intergenic 50.0%
GGAATTGAGTATCCCCAAGC+TGG - chr2.3:5586441-5586460 MS.gene052094:CDS 50.0%
GGTTGGAGTGATCAAGATGG+AGG - chr2.3:5585645-5585664 MS.gene052094:CDS 50.0%
GTCTCATGAGCCTAAGGGTA+GGG - chr2.3:5585624-5585643 MS.gene052094:CDS 50.0%
TCAAGATGGAGGGTGGTGTT+AGG - chr2.3:5585656-5585675 MS.gene052094:CDS 50.0%
TGTCTCATGAGCCTAAGGGT+AGG - chr2.3:5585623-5585642 MS.gene052094:CDS 50.0%
TTCCCAGTTTCGGGATGGTA+TGG + chr2.3:5586553-5586572 None:intergenic 50.0%
! CAAGATGGAGGGTGGTGTTA+GGG - chr2.3:5585657-5585676 MS.gene052094:CDS 50.0%
! CCTGATACACCAGTTTCTGG+TGG - chr2.3:5585352-5585371 MS.gene052094:CDS 50.0%
!! ACTCAGGTTGGTGAGCTTGA+TGG - chr2.3:5585940-5585959 MS.gene052094:CDS 50.0%
!! AGGTTGGTGAGCTTGATGGA+GGG - chr2.3:5585944-5585963 MS.gene052094:CDS 50.0%
!! CCAGTTTCTGGTGGTGATTC+TGG - chr2.3:5585361-5585380 MS.gene052094:CDS 50.0%
ACGAGTGGCTCCGAATTGGA+TGG + chr2.3:5585037-5585056 None:intergenic 55.0%
AGGCCATACCATCCCGAAAC+TGG - chr2.3:5586547-5586566 MS.gene052094:CDS 55.0%
CATGAGCCTAAGGGTAGGGT+TGG - chr2.3:5585628-5585647 MS.gene052094:CDS 55.0%
CCTGTGATCCTCAACTTGGG+TGG + chr2.3:5586423-5586442 None:intergenic 55.0%
CGAGTGGCTCCGAATTGGAT+GGG + chr2.3:5585036-5585055 None:intergenic 55.0%
GAATGCGATTGAAGCGCGCA+TGG - chr2.3:5586149-5586168 MS.gene052094:CDS 55.0%
GCCGCTGTGTGCTGAACAAA+AGG - chr2.3:5585894-5585913 MS.gene052094:intron 55.0%
GGAGTGATCAAGATGGAGGG+TGG - chr2.3:5585649-5585668 MS.gene052094:CDS 55.0%
GGCCATACCATCCCGAAACT+GGG - chr2.3:5586548-5586567 MS.gene052094:CDS 55.0%
TCGACCGGCAGAGAGAATAG+AGG - chr2.3:5586467-5586486 MS.gene052094:CDS 55.0%
TGGTGAGCTTGATGGAGGGA+AGG - chr2.3:5585948-5585967 MS.gene052094:CDS 55.0%
! CCACCCAAGTTGAGGATCAC+AGG - chr2.3:5586420-5586439 MS.gene052094:CDS 55.0%
!! CAGGTTGGTGAGCTTGATGG+AGG - chr2.3:5585943-5585962 MS.gene052094:CDS 55.0%
!! GCCCACATAAGGGTTGGTCA+TGG + chr2.3:5585014-5585033 None:intergenic 55.0%
AGGGTGGACCACCCAAGTTG+AGG - chr2.3:5586412-5586431 MS.gene052094:CDS 60.0%
GCAGTCTGCGGTTTCCGTTG+AGG - chr2.3:5585819-5585838 MS.gene052094:intron 60.0%
GCGATTGAAGCGCGCATGGT+TGG - chr2.3:5586153-5586172 MS.gene052094:CDS 60.0%
GGATGGGCCCACATAAGGGT+TGG + chr2.3:5585020-5585039 None:intergenic 60.0%
TGCCGGTCGAAAGCCAGCTT+GGG + chr2.3:5586457-5586476 None:intergenic 60.0%
!! CGCATGGTTGGTGCTGGTAC+CGG - chr2.3:5586165-5586184 MS.gene052094:CDS 60.0%
!! TCCCCAAGCTGGCTTTCGAC+CGG - chr2.3:5586452-5586471 MS.gene052094:CDS 60.0%
CTGCCGGTCGAAAGCCAGCT+TGG + chr2.3:5586458-5586477 None:intergenic 65.0%
GCCGGTCGAAAGCCAGCTTG+GGG + chr2.3:5586456-5586475 None:intergenic 65.0%
! GAAGCGCGCATGGTTGGTGC+TGG - chr2.3:5586159-5586178 MS.gene052094:CDS 65.0%


Chromosome Type Strat End Strand Name
chr2.3 gene 5584911 5586632 5584911 ID=MS.gene052094
chr2.3 mRNA 5584911 5586632 5584911 ID=MS.gene052094.t1;Parent=MS.gene052094
chr2.3 exon 5585898 5586632 5585898 ID=MS.gene052094.t1.exon1;Parent=MS.gene052094.t1
chr2.3 CDS 5585898 5586632 5585898 ID=cds.MS.gene052094.t1;Parent=MS.gene052094.t1
chr2.3 exon 5584911 5585780 5584911 ID=MS.gene052094.t1.exon2;Parent=MS.gene052094.t1
chr2.3 CDS 5584911 5585780 5584911 ID=cds.MS.gene052094.t1;Parent=MS.gene052094.t1
Gene Sequence

>MS.gene052094

ATGGATCCGAACTTTGTCGGATTCGAAACAACCTACAAATTCGATGACCATGGTAATCTAATTCTTCTCTCTGATCCAAATCCAAACCTTAACGATTTCACCATGACCAACCCTTATGTGGGCCCATCCAATTCGGAGCCACTCGTTTTTTCTTCTGATGCAACCAAAGATTCTACCTTTGAAGATGCTGATTTTTCAGAAACTGTGAAATATATAAGCCAGATTCTAATGGAAGAAGATTTTGAACAAAAACCATGCATGTGTTATGACCCACTTAGTCTTCAACATACTGAGAAAATTTTCTTTGATGCTTTGGAATCAAATTTGCCTCTTTCACCTAATCAACACCCTCTTGATGTTCTTGAGATTCCTAGTAGCAATTGTTGTGTTCCTACTGATTCTGGTAATAGTTCTAGTTCTAATGAGTTAAAGCCTCTTTCACCTGATACACCAGTTTCTGGTGGTGATTCTGGTTTTAATTCAGTGAAGTCTCAGTTTATTGTTCCAAATCATGGTTTCAGTTTGAGTAATAGTAATATTAGTGATGGTGTTTTTGATTTGGATTCTTCTGAGACTAGGGTTATGGCTCAGAATATTTTTAGTGATGCTGATTCTATTTTGCAGTTTAGAAAAGGGTTAGAGGAAGCTAGCAAGTTTCTTCCTCAAAAAGCTCAGCTTTTTACTGGTTTTGAGAATGCTAGTGATAGTTTAGTGTCTCATGAGCCTAAGGGTAGGGTTGGAGTGATCAAGATGGAGGGTGGTGTTAGGGAGAACTCGAATTCGAGTTATTCAAGTTCAAATTTGAATTCGGGTTATTCGAGTTCAAATTCGAATTCAAATGGTTTGTTGAAGAGTAGAAAGAATCACGAGCGTCAAGAAAGTGACGATGAAGAAGGAAGAAGTAACAAGCAGTCTGCGGTTTCCGTTGAGGAGAGTGAAATATCTGATATGTTTGATAGGGTTTTGCTTAGTGTTGAAAACGTGCCGCTGTGTGCTGAACAAAAGGATGGATCAGTGGTGGAAAGTAGAACTCAGGTTGGTGAGCTTGATGGAGGGAAGGCACATACAAAGAAACAAGGGAGGAAGAAGGAAACTGTGGATTTGAGGACCCTTTTGGTTCTTTGTGCACAAGCTGTGTCTGCTAATGACAATAGGACTGCTAATGAATTGTTGAGGCAGATTAGGAAGCATTCTTCTCCTTCAGGTGATGCATCACAGAGAATGGCTCATTACTTTGCGAATGCGATTGAAGCGCGCATGGTTGGTGCTGGTACCGGTACACAAATATTATATATGAGCCAAAAGATGTTTAGTGCTGCTGATTTCTTGAAAGCTTACCAAGTTTTTATCTCTGCTTGCCCTTTCAAAAAATTTGCACATTTCTTTGCAAATAAAATGATTTTGAAAACAGCTGAAAAGGCAGAAACCCTTCACATTATTGATTTTGGTATCTTATATGGTTTCCAGTGGCCAATTCTTATTAAGTTTTTGTCAAAAGTAGAGGGTGGACCACCCAAGTTGAGGATCACAGGAATTGAGTATCCCCAAGCTGGCTTTCGACCGGCAGAGAGAATAGAGGAAACTGGCCGGCGTTTAGCTAACTATTGTGAACGTTTCAATGTTTCCTTCGAATACAAGGCCATACCATCCCGAAACTGGGAAACCATTCAAATTGAAGACCTTAATATTAAGAGCAATGAGGTAGTGGCTGTGAACTGTTTG
Protein sequence

>MS.gene052094.t1

MDPNFVGFETTYKFDDHGNLILLSDPNPNLNDFTMTNPYVGPSNSEPLVFSSDATKDSTFEDADFSETVKYISQILMEEDFEQKPCMCYDPLSLQHTEKIFFDALESNLPLSPNQHPLDVLEIPSSNCCVPTDSGNSSSSNELKPLSPDTPVSGGDSGFNSVKSQFIVPNHGFSLSNSNISDGVFDLDSSETRVMAQNIFSDADSILQFRKGLEEASKFLPQKAQLFTGFENASDSLVSHEPKGRSRKNHERQESDDEEGRSNKQSAVSVEESEISDMFDRVLLSVENVPLCAEQKDGSVVESRTQVGELDGGKAHTKKQGRKKETVDLRTLLVLCAQAVSANDNRTANELLRQIRKHSSPSGDASQRMAHYFANAIEARMVGAGTGTQILYMSQKMFSAADFLKAYQVFISACPFKKFAHFFANKMILKTAEKAETLHIIDFGILYGFQWPILIKFLSKVEGGPPKLRITGIEYPQAGFRPAERIEETGRRLANYCERFNVSFEYKAIPSRNWETIQIEDLNIKSNEVVAVNCL