Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78446.t1 | XP_003623251.1 | 68.8 | 526 | 135 | 6 | 15 | 525 | 38 | 549 | 6.00E-194 | 687.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78446.t1 | Q9SD53 | 34.2 | 161 | 90 | 7 | 38 | 195 | 44 | 191 | 2.7e-09 | 65.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78446.t1 | G7KRC7 | 68.8 | 526 | 135 | 6 | 15 | 525 | 38 | 549 | 4.3e-194 | 687.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052187 | MS.gene78446 | 0.801608 | 8.31E-49 | -1.69E-46 |
| MS.gene053074 | MS.gene78446 | 0.808672 | 2.76E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78446.t1 | MTR_7g067750 | 68.821 | 526 | 135 | 6 | 15 | 525 | 38 | 549 | 0.0 | 714 |
| MS.gene78446.t1 | MTR_7g068160 | 62.222 | 540 | 164 | 11 | 14 | 525 | 10 | 537 | 0.0 | 614 |
| MS.gene78446.t1 | MTR_7g067990 | 51.560 | 609 | 181 | 13 | 18 | 525 | 2 | 597 | 0.0 | 531 |
| MS.gene78446.t1 | MTR_7g067970 | 51.167 | 557 | 206 | 15 | 14 | 525 | 3 | 538 | 6.10e-173 | 499 |
| MS.gene78446.t1 | MTR_7g068070 | 51.434 | 558 | 198 | 12 | 20 | 525 | 9 | 545 | 6.84e-173 | 499 |
| MS.gene78446.t1 | MTR_7g067880 | 50.667 | 525 | 216 | 11 | 14 | 511 | 3 | 511 | 1.79e-161 | 469 |
| MS.gene78446.t1 | MTR_7g067940 | 49.545 | 549 | 224 | 16 | 16 | 525 | 5 | 539 | 5.48e-159 | 463 |
| MS.gene78446.t1 | MTR_7g067300 | 45.149 | 536 | 209 | 19 | 18 | 525 | 1 | 479 | 9.86e-123 | 369 |
| MS.gene78446.t1 | MTR_7g067600 | 42.144 | 541 | 255 | 15 | 20 | 525 | 7 | 524 | 1.90e-114 | 349 |
| MS.gene78446.t1 | MTR_3g466740 | 36.111 | 540 | 252 | 18 | 12 | 525 | 2 | 474 | 9.45e-85 | 270 |
| MS.gene78446.t1 | MTR_0067s0010 | 35.316 | 538 | 255 | 18 | 10 | 524 | 13 | 480 | 3.16e-82 | 264 |
| MS.gene78446.t1 | MTR_7g068150 | 44.920 | 374 | 147 | 12 | 19 | 379 | 4 | 331 | 1.67e-81 | 263 |
| MS.gene78446.t1 | MTR_1g040690 | 30.713 | 547 | 254 | 17 | 21 | 521 | 8 | 475 | 1.52e-60 | 207 |
| MS.gene78446.t1 | MTR_7g067660 | 51.515 | 198 | 76 | 4 | 343 | 525 | 190 | 382 | 5.29e-55 | 189 |
| MS.gene78446.t1 | MTR_7g067660 | 53.409 | 176 | 76 | 5 | 25 | 195 | 1 | 175 | 7.32e-49 | 173 |
| MS.gene78446.t1 | MTR_7g068040 | 52.096 | 167 | 53 | 2 | 34 | 200 | 11 | 150 | 1.28e-45 | 157 |
| MS.gene78446.t1 | MTR_1g038270 | 26.834 | 518 | 237 | 19 | 37 | 490 | 19 | 458 | 2.82e-33 | 132 |
| MS.gene78446.t1 | MTR_4g015410 | 28.101 | 395 | 154 | 12 | 104 | 483 | 22 | 301 | 9.02e-31 | 123 |
| MS.gene78446.t1 | MTR_7g068030 | 43.200 | 125 | 65 | 3 | 307 | 429 | 5 | 125 | 2.85e-22 | 93.2 |
| MS.gene78446.t1 | MTR_4g015450 | 25.269 | 372 | 155 | 14 | 189 | 517 | 179 | 470 | 4.89e-18 | 87.4 |
| MS.gene78446.t1 | MTR_4g015290 | 40.876 | 137 | 57 | 4 | 21 | 152 | 9 | 126 | 3.71e-17 | 81.3 |
| MS.gene78446.t1 | MTR_3g079390 | 23.495 | 515 | 311 | 17 | 13 | 520 | 13 | 451 | 9.27e-17 | 83.2 |
| MS.gene78446.t1 | MTR_2g041180 | 22.921 | 493 | 264 | 18 | 38 | 514 | 48 | 440 | 5.47e-13 | 71.6 |
| MS.gene78446.t1 | MTR_8g005235 | 23.361 | 488 | 285 | 22 | 39 | 516 | 26 | 434 | 6.42e-11 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78446.t1 | AT3G50160 | 23.208 | 530 | 290 | 20 | 11 | 524 | 71 | 499 | 1.45e-15 | 79.7 |
| MS.gene78446.t1 | AT5G22560 | 27.083 | 240 | 121 | 9 | 38 | 251 | 45 | 256 | 7.99e-15 | 77.4 |
| MS.gene78446.t1 | AT2G36430 | 34.177 | 158 | 92 | 6 | 39 | 195 | 44 | 190 | 2.87e-14 | 75.5 |
| MS.gene78446.t1 | AT3G47250 | 32.484 | 157 | 99 | 4 | 39 | 195 | 60 | 209 | 7.25e-14 | 74.3 |
| MS.gene78446.t1 | AT3G47250 | 32.484 | 157 | 99 | 4 | 39 | 195 | 60 | 209 | 7.25e-14 | 74.3 |
| MS.gene78446.t1 | AT3G47250 | 32.484 | 157 | 99 | 4 | 39 | 195 | 60 | 209 | 7.25e-14 | 74.3 |
| MS.gene78446.t1 | AT4G31980 | 29.878 | 164 | 98 | 7 | 40 | 200 | 293 | 442 | 3.97e-12 | 69.3 |
| MS.gene78446.t1 | AT3G50180 | 23.320 | 506 | 260 | 22 | 45 | 524 | 183 | 586 | 1.08e-11 | 67.8 |
| MS.gene78446.t1 | AT3G50130 | 29.353 | 201 | 124 | 9 | 5 | 198 | 100 | 289 | 3.35e-11 | 66.2 |
Find 104 sgRNAs with CRISPR-Local
Find 123 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCGCATTCCCGAACGTATTT+TGG | 0.051870 | 7.4:-35532040 | None:intergenic |
| TTCCTTGCTTCCCTTGAATC+TGG | 0.157672 | 7.4:-35531939 | None:intergenic |
| AAAAGGGGAGAGGAATTATT+TGG | 0.180087 | 7.4:-35533310 | None:intergenic |
| AGTTTCATTCGGAACTATTT+TGG | 0.216145 | 7.4:+35532667 | MS.gene78446:CDS |
| ATAGCTTAGTACTTGATAAT+TGG | 0.226739 | 7.4:-35531744 | None:intergenic |
| AGAGGAATTATTTGGGTAAA+TGG | 0.251834 | 7.4:-35533302 | None:intergenic |
| GATGAGTTTATAAGTTCTTC+TGG | 0.259891 | 7.4:-35531875 | None:intergenic |
| CCACTTTGCTTTCGTTGTTT+TGG | 0.269443 | 7.4:-35532833 | None:intergenic |
| CGAAGCACAGCGCTTTAGTT+TGG | 0.272572 | 7.4:-35532578 | None:intergenic |
| TCCTTGCTTCCCTTGAATCT+GGG | 0.295775 | 7.4:-35531938 | None:intergenic |
| AATTATGTAGTACCCATTAT+TGG | 0.305765 | 7.4:+35532538 | MS.gene78446:CDS |
| AAGCAGCCGAAGTAAATTTC+CGG | 0.336936 | 7.4:-35532969 | None:intergenic |
| ATGTCGTTTGGAGTTGATCT+TGG | 0.340412 | 7.4:+35533108 | MS.gene78446:CDS |
| CAGATGCTGAGTACCAATAA+TGG | 0.351802 | 7.4:-35532551 | None:intergenic |
| TCTGTCTGATCTTATGTTGT+TGG | 0.354069 | 7.4:+35532267 | MS.gene78446:CDS |
| TCCTCCAGATCCTCTGGTTC+AGG | 0.354272 | 7.4:-35532352 | None:intergenic |
| GAAGCACAGCGCTTTAGTTT+GGG | 0.355308 | 7.4:-35532577 | None:intergenic |
| CGGGACTGGGTGAGCGCAAC+CGG | 0.361158 | 7.4:-35532216 | None:intergenic |
| GATGCGTCGGAAGAAGTTAA+AGG | 0.369006 | 7.4:+35532751 | MS.gene78446:CDS |
| AATATTTCTGCTGCTGAGTC+CGG | 0.384543 | 7.4:+35532907 | MS.gene78446:CDS |
| GCTTCGAGGCTTCAAGCTGC+AGG | 0.388869 | 7.4:+35532595 | MS.gene78446:CDS |
| CAACTTTGTTGCTGCGATGC+TGG | 0.397180 | 7.4:+35533236 | MS.gene78446:CDS |
| TTGGAGCTTGTGATTACAAA+AGG | 0.400184 | 7.4:+35532172 | MS.gene78446:CDS |
| TTGTTCATCTGATTTCCATA+TGG | 0.401326 | 7.4:-35532068 | None:intergenic |
| CAGCACTTTAGATGCGGGAC+TGG | 0.410243 | 7.4:-35532230 | None:intergenic |
| TCTGGTTCAGGAAACTCATC+AGG | 0.411679 | 7.4:-35532340 | None:intergenic |
| AATCTTATTCTGTCTATCAT+AGG | 0.412582 | 7.4:+35532403 | MS.gene78446:CDS |
| AAAGTATTTGTGACAATTTG+TGG | 0.414090 | 7.4:-35532315 | None:intergenic |
| GGGGTTACTATCAAACTTGC+TGG | 0.415127 | 7.4:+35532616 | MS.gene78446:CDS |
| GCTGTCCAGCTCGATGTAAC+AGG | 0.421825 | 7.4:-35532006 | None:intergenic |
| TGTCGTTTGGAGTTGATCTT+GGG | 0.424671 | 7.4:+35533109 | MS.gene78446:CDS |
| TTCATGTCCTCCAGATCCTC+TGG | 0.430533 | 7.4:-35532358 | None:intergenic |
| CTAGACGACCTTTGAAAAGA+TGG | 0.433125 | 7.4:-35533182 | None:intergenic |
| AACTAAAGCGCTGTGCTTCG+AGG | 0.437440 | 7.4:+35532581 | MS.gene78446:CDS |
| ATTCTAGCTTCAGTTTCATT+CGG | 0.442589 | 7.4:+35532656 | MS.gene78446:CDS |
| TGTTCACAGATGTCAGTAAC+AGG | 0.443336 | 7.4:-35531817 | None:intergenic |
| GTTTCCTGAACCAGAGGATC+TGG | 0.444062 | 7.4:+35532348 | MS.gene78446:CDS |
| CTTCGAGGCTTCAAGCTGCA+GGG | 0.450668 | 7.4:+35532596 | MS.gene78446:CDS |
| GGGAATGCGGTGAAGCCATA+TGG | 0.451325 | 7.4:+35532053 | MS.gene78446:CDS |
| AAAGGGGAGAGGAATTATTT+GGG | 0.453583 | 7.4:-35533309 | None:intergenic |
| CTGGGTGAGCGCAACCGGCT+TGG | 0.454168 | 7.4:-35532211 | None:intergenic |
| CGGATTCCCCAAAATACGTT+CGG | 0.456575 | 7.4:+35532032 | MS.gene78446:CDS |
| AGATGCTGAGTACCAATAAT+GGG | 0.458016 | 7.4:-35532550 | None:intergenic |
| GGCTGATGTGAATCTTCTTA+AGG | 0.467353 | 7.4:+35533020 | MS.gene78446:CDS |
| ATGCCAAAGGTGGTTTCAAT+CGG | 0.468831 | 7.4:+35531914 | MS.gene78446:CDS |
| GGTCCGATTGAAACCACCTT+TGG | 0.469202 | 7.4:-35531917 | None:intergenic |
| AATTTGTGGAGTACTAGAAT+TGG | 0.470241 | 7.4:-35532301 | None:intergenic |
| GAAGATGAGTAACGAGGAGT+TGG | 0.474097 | 7.4:+35533068 | MS.gene78446:CDS |
| TTCAATCGGACCCAGATTCA+AGG | 0.477685 | 7.4:+35531928 | MS.gene78446:CDS |
| TGAGGAGCATTGAAGTAGCT+TGG | 0.480196 | 7.4:-35532451 | None:intergenic |
| CTGGTTATTGTCATTGCTCC+CGG | 0.481731 | 7.4:-35532926 | None:intergenic |
| TAAACTAGAAAAGAAAGAAC+TGG | 0.490203 | 7.4:+35532117 | MS.gene78446:CDS |
| CAAGGAAGACTTACATCTCA+TGG | 0.492401 | 7.4:+35531955 | MS.gene78446:CDS |
| AGCACTTTAGATGCGGGACT+GGG | 0.500163 | 7.4:-35532229 | None:intergenic |
| GTGGCGCAATATCATTGCTT+GGG | 0.504157 | 7.4:+35532852 | MS.gene78446:CDS |
| ATATTTCTGCTGCTGAGTCC+GGG | 0.505052 | 7.4:+35532908 | MS.gene78446:CDS |
| ATGAAACCAACATGAATGAA+TGG | 0.505061 | 7.4:+35531780 | MS.gene78446:CDS |
| TTCTAACCATTCATTCATGT+TGG | 0.505296 | 7.4:-35531786 | None:intergenic |
| CCAAAATACGTTCGGGAATG+CGG | 0.507230 | 7.4:+35532040 | MS.gene78446:CDS |
| GGGTTACTATCAAACTTGCT+GGG | 0.513129 | 7.4:+35532617 | MS.gene78446:CDS |
| TATAAGTTCTTCTGGAACGA+TGG | 0.514792 | 7.4:-35531867 | None:intergenic |
| TACTAAGCTATGACGAAGCA+AGG | 0.515503 | 7.4:+35531756 | MS.gene78446:CDS |
| AGTGGCGCAATATCATTGCT+TGG | 0.516886 | 7.4:+35532851 | MS.gene78446:CDS |
| GGTGGTATATGCATAAGGCT+TGG | 0.519611 | 7.4:+35532688 | MS.gene78446:CDS |
| GAATTATTTGGGTAAATGGT+AGG | 0.522562 | 7.4:-35533298 | None:intergenic |
| TGGACAATATCAAGAATATG+AGG | 0.523753 | 7.4:-35532469 | None:intergenic |
| CGATGGATTGGTTTGTTGTG+CGG | 0.530353 | 7.4:+35532999 | MS.gene78446:CDS |
| GGATTCCCCAAAATACGTTC+GGG | 0.535844 | 7.4:+35532033 | MS.gene78446:CDS |
| TAGACGACCTTTGAAAAGAT+GGG | 0.537479 | 7.4:-35533181 | None:intergenic |
| TCTTTCAGCACTTTAGATGC+GGG | 0.537572 | 7.4:-35532235 | None:intergenic |
| GTCTTTCAGCACTTTAGATG+CGG | 0.540606 | 7.4:-35532236 | None:intergenic |
| TGGAGCTTGTGATTACAAAA+GGG | 0.550907 | 7.4:+35532173 | MS.gene78446:CDS |
| AGAGGATCTGGAGGACATGA+AGG | 0.564753 | 7.4:+35532360 | MS.gene78446:CDS |
| TCAATTCTAAACTTCCAAGC+CGG | 0.569732 | 7.4:+35532197 | MS.gene78446:CDS |
| AACTAATACTCAAGTGGATG+CGG | 0.573179 | 7.4:+35532726 | MS.gene78446:CDS |
| TCAATACGAGTAGTCTCAGC+CGG | 0.574192 | 7.4:+35532950 | MS.gene78446:CDS |
| GTGTACCTGTTACATCGAGC+TGG | 0.577404 | 7.4:+35532001 | MS.gene78446:CDS |
| TGTCACAACTAATACTCAAG+TGG | 0.587034 | 7.4:+35532720 | MS.gene78446:CDS |
| AGTGGATGCGGTGGATGCGT+CGG | 0.590436 | 7.4:+35532738 | MS.gene78446:CDS |
| TCAATCGGACCCAGATTCAA+GGG | 0.592710 | 7.4:+35531929 | MS.gene78446:CDS |
| TCTCAGCCGGAAATTTACTT+CGG | 0.593853 | 7.4:+35532963 | MS.gene78446:CDS |
| CGGGAGCAATGACAATAACC+AGG | 0.594913 | 7.4:+35532927 | MS.gene78446:CDS |
| ACCCAGATTCAAGGGAAGCA+AGG | 0.601462 | 7.4:+35531937 | MS.gene78446:CDS |
| AGGAGAAACTTGAAATTGCA+CGG | 0.602497 | 7.4:+35532800 | MS.gene78446:CDS |
| TTCGAGGCTTCAAGCTGCAG+GGG | 0.606885 | 7.4:+35532597 | MS.gene78446:CDS |
| AAGATCAACTCCAAACGACA+TGG | 0.610920 | 7.4:-35533106 | None:intergenic |
| TAATACTCAAGTGGATGCGG+TGG | 0.611345 | 7.4:+35532729 | MS.gene78446:CDS |
| GGAAGTCAAATTACGCTCGA+TGG | 0.611355 | 7.4:+35531979 | MS.gene78446:CDS |
| TCCTGAACCAGAGGATCTGG+AGG | 0.621682 | 7.4:+35532351 | MS.gene78446:CDS |
| CCAAAACAACGAAAGCAAAG+TGG | 0.622805 | 7.4:+35532833 | MS.gene78446:CDS |
| CAAAGCAGATTACATGCCAA+AGG | 0.629483 | 7.4:+35531901 | MS.gene78446:CDS |
| AGCAGATTACATGCCAAAGG+TGG | 0.630627 | 7.4:+35531904 | MS.gene78446:CDS |
| TAAGGACAAGAATATCATTG+TGG | 0.634655 | 7.4:+35533038 | MS.gene78446:CDS |
| TGATGAGTTTCCTGAACCAG+AGG | 0.639896 | 7.4:+35532342 | MS.gene78446:CDS |
| GGTTACTATCAAACTTGCTG+GGG | 0.640394 | 7.4:+35532618 | MS.gene78446:CDS |
| ACTAAGCTATGACGAAGCAA+GGG | 0.645159 | 7.4:+35531757 | MS.gene78446:CDS |
| CTGGTTCAGGAAACTCATCA+GGG | 0.647397 | 7.4:-35532339 | None:intergenic |
| GATCTGGAGGACATGAAGGA+CGG | 0.648301 | 7.4:+35532364 | MS.gene78446:CDS |
| TGAGACTACTCGTATTGACC+TGG | 0.658636 | 7.4:-35532945 | None:intergenic |
| AAACAGTCTGCACAAGAGTG+AGG | 0.661263 | 7.4:-35533263 | None:intergenic |
| TAGTACTTGATAATTGGACA+TGG | 0.663789 | 7.4:-35531738 | None:intergenic |
| ACATCGAGCTGGACAGCCGA+CGG | 0.663949 | 7.4:+35532012 | MS.gene78446:CDS |
| TCATTTGAAGATGAGTAACG+AGG | 0.740171 | 7.4:+35533062 | MS.gene78446:CDS |
| GGAAGACTTACATCTCATGG+AGG | 0.746408 | 7.4:+35531958 | MS.gene78446:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAAGATTATTAATCTTTTT+CGG | - | chr7.4:35532391-35532410 | None:intergenic | 10.0% |
| !!! | ATCAACAATTTTAACATAAC+TGG | - | chr7.4:35533145-35533164 | None:intergenic | 20.0% |
| !!! | TTTTTACTTTAACTTCGAAA+AGG | + | chr7.4:35532780-35532799 | MS.gene78446:CDS | 20.0% |
| ! | AATCTTATTCTGTCTATCAT+AGG | + | chr7.4:35532403-35532422 | MS.gene78446:CDS | 25.0% |
| ! | AATTATGTAGTACCCATTAT+TGG | + | chr7.4:35532538-35532557 | MS.gene78446:CDS | 25.0% |
| ! | ACTGGCAAAAATAATGTTAA+TGG | + | chr7.4:35532135-35532154 | MS.gene78446:CDS | 25.0% |
| ! | GCAAAAATAATGTTAATGGA+TGG | + | chr7.4:35532139-35532158 | MS.gene78446:CDS | 25.0% |
| ! | TAAACTAGAAAAGAAAGAAC+TGG | + | chr7.4:35532117-35532136 | MS.gene78446:CDS | 25.0% |
| !! | AAAGTATTTGTGACAATTTG+TGG | - | chr7.4:35532318-35532337 | None:intergenic | 25.0% |
| !! | ATAGCTTAGTACTTGATAAT+TGG | - | chr7.4:35531747-35531766 | None:intergenic | 25.0% |
| !! | CTTTTCTGTTAACAAAAAAG+TGG | - | chr7.4:35532492-35532511 | None:intergenic | 25.0% |
| !!! | CACTTTTTTGTTAACAGAAA+AGG | + | chr7.4:35532490-35532509 | MS.gene78446:CDS | 25.0% |
| AAAGGTGAGACAAAAAATGA+CGG | + | chr7.4:35532508-35532527 | MS.gene78446:CDS | 30.0% | |
| ATGAAACCAACATGAATGAA+TGG | + | chr7.4:35531780-35531799 | MS.gene78446:CDS | 30.0% | |
| GATGAGTTTATAAGTTCTTC+TGG | - | chr7.4:35531878-35531897 | None:intergenic | 30.0% | |
| TAAGGACAAGAATATCATTG+TGG | + | chr7.4:35533038-35533057 | MS.gene78446:CDS | 30.0% | |
| TGGACAATATCAAGAATATG+AGG | - | chr7.4:35532472-35532491 | None:intergenic | 30.0% | |
| TTCTAACCATTCATTCATGT+TGG | - | chr7.4:35531789-35531808 | None:intergenic | 30.0% | |
| TTGTTCATCTGATTTCCATA+TGG | - | chr7.4:35532071-35532090 | None:intergenic | 30.0% | |
| ! | AATTACTCCCATCTTTTCAA+AGG | + | chr7.4:35533174-35533193 | MS.gene78446:CDS | 30.0% |
| ! | AATTTGTGGAGTACTAGAAT+TGG | - | chr7.4:35532304-35532323 | None:intergenic | 30.0% |
| ! | AGTTTCATTCGGAACTATTT+TGG | + | chr7.4:35532667-35532686 | MS.gene78446:CDS | 30.0% |
| !! | ATTCTAGCTTCAGTTTCATT+CGG | + | chr7.4:35532656-35532675 | MS.gene78446:CDS | 30.0% |
| !! | ATTTTGGTGGTATATGCATA+AGG | + | chr7.4:35532683-35532702 | MS.gene78446:CDS | 30.0% |
| !!! | TTTTTTCATTCCATGTCGTT+TGG | + | chr7.4:35533096-35533115 | MS.gene78446:CDS | 30.0% |
| AACTAATACTCAAGTGGATG+CGG | + | chr7.4:35532726-35532745 | MS.gene78446:CDS | 35.0% | |
| AAGGTGAGACAAAAAATGAC+GGG | + | chr7.4:35532509-35532528 | MS.gene78446:CDS | 35.0% | |
| AGATGCTGAGTACCAATAAT+GGG | - | chr7.4:35532553-35532572 | None:intergenic | 35.0% | |
| AGGAGAAACTTGAAATTGCA+CGG | + | chr7.4:35532800-35532819 | MS.gene78446:CDS | 35.0% | |
| TCAATTCTAAACTTCCAAGC+CGG | + | chr7.4:35532197-35532216 | MS.gene78446:CDS | 35.0% | |
| TCATTTGAAGATGAGTAACG+AGG | + | chr7.4:35533062-35533081 | MS.gene78446:CDS | 35.0% | |
| TCTGTCTGATCTTATGTTGT+TGG | + | chr7.4:35532267-35532286 | MS.gene78446:CDS | 35.0% | |
| TGGAGCTTGTGATTACAAAA+GGG | + | chr7.4:35532173-35532192 | MS.gene78446:CDS | 35.0% | |
| TGTCACAACTAATACTCAAG+TGG | + | chr7.4:35532720-35532739 | MS.gene78446:CDS | 35.0% | |
| TTGGAGCTTGTGATTACAAA+AGG | + | chr7.4:35532172-35532191 | MS.gene78446:CDS | 35.0% | |
| ! | AATGGATGGATGTTTTCTGT+TGG | + | chr7.4:35532153-35532172 | MS.gene78446:CDS | 35.0% |
| ! | TAGACGACCTTTGAAAAGAT+GGG | - | chr7.4:35533184-35533203 | None:intergenic | 35.0% |
| ! | TAGCTTGGATTTTGAACTTC+AGG | - | chr7.4:35532439-35532458 | None:intergenic | 35.0% |
| ! | TTTTCAAAGGTCGTCTAGAA+TGG | + | chr7.4:35533187-35533206 | MS.gene78446:CDS | 35.0% |
| !! | TATAAGTTCTTCTGGAACGA+TGG | - | chr7.4:35531870-35531889 | None:intergenic | 35.0% |
| !! | TGCTTTGATTTTCGATGGAT+TGG | + | chr7.4:35532987-35533006 | MS.gene78446:CDS | 35.0% |
| !! | TTCATTCGGAACTATTTTGG+TGG | + | chr7.4:35532670-35532689 | MS.gene78446:CDS | 35.0% |
| AAGATCAACTCCAAACGACA+TGG | - | chr7.4:35533109-35533128 | None:intergenic | 40.0% | |
| AAGCAGCCGAAGTAAATTTC+CGG | - | chr7.4:35532972-35532991 | None:intergenic | 40.0% | |
| ACTAAGCTATGACGAAGCAA+GGG | + | chr7.4:35531757-35531776 | MS.gene78446:CDS | 40.0% | |
| AGGTGAGACAAAAAATGACG+GGG | + | chr7.4:35532510-35532529 | MS.gene78446:CDS | 40.0% | |
| ATGCCAAAGGTGGTTTCAAT+CGG | + | chr7.4:35531914-35531933 | MS.gene78446:CDS | 40.0% | |
| CAAAGCAGATTACATGCCAA+AGG | + | chr7.4:35531901-35531920 | MS.gene78446:CDS | 40.0% | |
| CAAGGAAGACTTACATCTCA+TGG | + | chr7.4:35531955-35531974 | MS.gene78446:CDS | 40.0% | |
| CAGATGCTGAGTACCAATAA+TGG | - | chr7.4:35532554-35532573 | None:intergenic | 40.0% | |
| CCAAAACAACGAAAGCAAAG+TGG | + | chr7.4:35532833-35532852 | MS.gene78446:CDS | 40.0% | |
| GGCTGATGTGAATCTTCTTA+AGG | + | chr7.4:35533020-35533039 | MS.gene78446:CDS | 40.0% | |
| GTCTTTCAGCACTTTAGATG+CGG | - | chr7.4:35532239-35532258 | None:intergenic | 40.0% | |
| TACTAAGCTATGACGAAGCA+AGG | + | chr7.4:35531756-35531775 | MS.gene78446:CDS | 40.0% | |
| TCTCAGCCGGAAATTTACTT+CGG | + | chr7.4:35532963-35532982 | MS.gene78446:CDS | 40.0% | |
| TCTTTCAGCACTTTAGATGC+GGG | - | chr7.4:35532238-35532257 | None:intergenic | 40.0% | |
| TGTTCACAGATGTCAGTAAC+AGG | - | chr7.4:35531820-35531839 | None:intergenic | 40.0% | |
| ! | AATATTTCTGCTGCTGAGTC+CGG | + | chr7.4:35532907-35532926 | MS.gene78446:CDS | 40.0% |
| ! | ATGTCGTTTGGAGTTGATCT+TGG | + | chr7.4:35533108-35533127 | MS.gene78446:CDS | 40.0% |
| ! | CCACTTTGCTTTCGTTGTTT+TGG | - | chr7.4:35532836-35532855 | None:intergenic | 40.0% |
| ! | CTAGACGACCTTTGAAAAGA+TGG | - | chr7.4:35533185-35533204 | None:intergenic | 40.0% |
| ! | GGGTTACTATCAAACTTGCT+GGG | + | chr7.4:35532617-35532636 | MS.gene78446:CDS | 40.0% |
| ! | TGTCGTTTGGAGTTGATCTT+GGG | + | chr7.4:35533109-35533128 | MS.gene78446:CDS | 40.0% |
| !! | GGGAGCATCATAAAAACAAC+TGG | + | chr7.4:35532872-35532891 | MS.gene78446:CDS | 40.0% |
| !! | GGTTACTATCAAACTTGCTG+GGG | + | chr7.4:35532618-35532637 | MS.gene78446:CDS | 40.0% |
| AAACAGTCTGCACAAGAGTG+AGG | - | chr7.4:35533266-35533285 | None:intergenic | 45.0% | |
| AGCAGATTACATGCCAAAGG+TGG | + | chr7.4:35531904-35531923 | MS.gene78446:CDS | 45.0% | |
| AGTGGCGCAATATCATTGCT+TGG | + | chr7.4:35532851-35532870 | MS.gene78446:CDS | 45.0% | |
| CCAAAATACGTTCGGGAATG+CGG | + | chr7.4:35532040-35532059 | MS.gene78446:CDS | 45.0% | |
| CGGATTCCCCAAAATACGTT+CGG | + | chr7.4:35532032-35532051 | MS.gene78446:CDS | 45.0% | |
| CTGGTTATTGTCATTGCTCC+CGG | - | chr7.4:35532929-35532948 | None:intergenic | 45.0% | |
| CTGGTTCAGGAAACTCATCA+GGG | - | chr7.4:35532342-35532361 | None:intergenic | 45.0% | |
| GAAGATGAGTAACGAGGAGT+TGG | + | chr7.4:35533068-35533087 | MS.gene78446:CDS | 45.0% | |
| GATGCGTCGGAAGAAGTTAA+AGG | + | chr7.4:35532751-35532770 | MS.gene78446:CDS | 45.0% | |
| GGAAGACTTACATCTCATGG+AGG | + | chr7.4:35531958-35531977 | MS.gene78446:CDS | 45.0% | |
| GGAAGTCAAATTACGCTCGA+TGG | + | chr7.4:35531979-35531998 | MS.gene78446:CDS | 45.0% | |
| GGATTCCCCAAAATACGTTC+GGG | + | chr7.4:35532033-35532052 | MS.gene78446:CDS | 45.0% | |
| GGGGTTACTATCAAACTTGC+TGG | + | chr7.4:35532616-35532635 | MS.gene78446:CDS | 45.0% | |
| GGTGGTATATGCATAAGGCT+TGG | + | chr7.4:35532688-35532707 | MS.gene78446:CDS | 45.0% | |
| GTGGCGCAATATCATTGCTT+GGG | + | chr7.4:35532852-35532871 | MS.gene78446:CDS | 45.0% | |
| TAATACTCAAGTGGATGCGG+TGG | + | chr7.4:35532729-35532748 | MS.gene78446:CDS | 45.0% | |
| TCAATACGAGTAGTCTCAGC+CGG | + | chr7.4:35532950-35532969 | MS.gene78446:CDS | 45.0% | |
| TCAATCGGACCCAGATTCAA+GGG | + | chr7.4:35531929-35531948 | MS.gene78446:CDS | 45.0% | |
| TCCTTGCTTCCCTTGAATCT+GGG | - | chr7.4:35531941-35531960 | None:intergenic | 45.0% | |
| TGATGAGTTTCCTGAACCAG+AGG | + | chr7.4:35532342-35532361 | MS.gene78446:CDS | 45.0% | |
| TTCAATCGGACCCAGATTCA+AGG | + | chr7.4:35531928-35531947 | MS.gene78446:CDS | 45.0% | |
| TTCCTTGCTTCCCTTGAATC+TGG | - | chr7.4:35531942-35531961 | None:intergenic | 45.0% | |
| ! | ATATTTCTGCTGCTGAGTCC+GGG | + | chr7.4:35532908-35532927 | MS.gene78446:CDS | 45.0% |
| ! | CGCATTCCCGAACGTATTTT+GGG | - | chr7.4:35532042-35532061 | None:intergenic | 45.0% |
| ! | GAAGCACAGCGCTTTAGTTT+GGG | - | chr7.4:35532580-35532599 | None:intergenic | 45.0% |
| ! | GAGACAAAAAATGACGGGGT+TGG | + | chr7.4:35532514-35532533 | MS.gene78446:CDS | 45.0% |
| ! | GCATTCCCGAACGTATTTTG+GGG | - | chr7.4:35532041-35532060 | None:intergenic | 45.0% |
| ! | TCTGGTTCAGGAAACTCATC+AGG | - | chr7.4:35532343-35532362 | None:intergenic | 45.0% |
| ! | TGAGACTACTCGTATTGACC+TGG | - | chr7.4:35532948-35532967 | None:intergenic | 45.0% |
| !! | ACGTATTTTGGGGAATCCGT+CGG | - | chr7.4:35532031-35532050 | None:intergenic | 45.0% |
| !! | CGATGGATTGGTTTGTTGTG+CGG | + | chr7.4:35532999-35533018 | MS.gene78446:CDS | 45.0% |
| !! | TCGGCTGCTTTGATTTTCGA+TGG | + | chr7.4:35532982-35533001 | MS.gene78446:CDS | 45.0% |
| !! | TGAGGAGCATTGAAGTAGCT+TGG | - | chr7.4:35532454-35532473 | None:intergenic | 45.0% |
| ACCCAGATTCAAGGGAAGCA+AGG | + | chr7.4:35531937-35531956 | MS.gene78446:CDS | 50.0% | |
| AGAGGATCTGGAGGACATGA+AGG | + | chr7.4:35532360-35532379 | MS.gene78446:CDS | 50.0% | |
| AGCACTTTAGATGCGGGACT+GGG | - | chr7.4:35532232-35532251 | None:intergenic | 50.0% | |
| CAACTTTGTTGCTGCGATGC+TGG | + | chr7.4:35533236-35533255 | MS.gene78446:CDS | 50.0% | |
| CGAAGCACAGCGCTTTAGTT+TGG | - | chr7.4:35532581-35532600 | None:intergenic | 50.0% | |
| CGGGAGCAATGACAATAACC+AGG | + | chr7.4:35532927-35532946 | MS.gene78446:CDS | 50.0% | |
| GATCTGGAGGACATGAAGGA+CGG | + | chr7.4:35532364-35532383 | MS.gene78446:CDS | 50.0% | |
| GGTCCGATTGAAACCACCTT+TGG | - | chr7.4:35531920-35531939 | None:intergenic | 50.0% | |
| GTGTACCTGTTACATCGAGC+TGG | + | chr7.4:35532001-35532020 | MS.gene78446:CDS | 50.0% | |
| GTTTCCTGAACCAGAGGATC+TGG | + | chr7.4:35532348-35532367 | MS.gene78446:CDS | 50.0% | |
| TTCATGTCCTCCAGATCCTC+TGG | - | chr7.4:35532361-35532380 | None:intergenic | 50.0% | |
| ! | CCGCATTCCCGAACGTATTT+TGG | - | chr7.4:35532043-35532062 | None:intergenic | 50.0% |
| !! | AACTAAAGCGCTGTGCTTCG+AGG | + | chr7.4:35532581-35532600 | MS.gene78446:CDS | 50.0% |
| CAGCACTTTAGATGCGGGAC+TGG | - | chr7.4:35532233-35532252 | None:intergenic | 55.0% | |
| CTTCGAGGCTTCAAGCTGCA+GGG | + | chr7.4:35532596-35532615 | MS.gene78446:CDS | 55.0% | |
| GCTGTCCAGCTCGATGTAAC+AGG | - | chr7.4:35532009-35532028 | None:intergenic | 55.0% | |
| GGGAATGCGGTGAAGCCATA+TGG | + | chr7.4:35532053-35532072 | MS.gene78446:CDS | 55.0% | |
| TCCTGAACCAGAGGATCTGG+AGG | + | chr7.4:35532351-35532370 | MS.gene78446:CDS | 55.0% | |
| TTCGAGGCTTCAAGCTGCAG+GGG | + | chr7.4:35532597-35532616 | MS.gene78446:CDS | 55.0% | |
| ! | TCCTCCAGATCCTCTGGTTC+AGG | - | chr7.4:35532355-35532374 | None:intergenic | 55.0% |
| ACATCGAGCTGGACAGCCGA+CGG | + | chr7.4:35532012-35532031 | MS.gene78446:CDS | 60.0% | |
| AGTGGATGCGGTGGATGCGT+CGG | + | chr7.4:35532738-35532757 | MS.gene78446:CDS | 60.0% | |
| GCTTCGAGGCTTCAAGCTGC+AGG | + | chr7.4:35532595-35532614 | MS.gene78446:CDS | 60.0% | |
| CGGGACTGGGTGAGCGCAAC+CGG | - | chr7.4:35532219-35532238 | None:intergenic | 70.0% | |
| CTGGGTGAGCGCAACCGGCT+TGG | - | chr7.4:35532214-35532233 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 35531740 | 35533317 | 35531740 | ID=MS.gene78446 |
| chr7.4 | mRNA | 35531740 | 35533317 | 35531740 | ID=MS.gene78446.t1;Parent=MS.gene78446 |
| chr7.4 | exon | 35531740 | 35533317 | 35531740 | ID=MS.gene78446.t1.exon1;Parent=MS.gene78446.t1 |
| chr7.4 | CDS | 35531740 | 35533317 | 35531740 | ID=cds.MS.gene78446.t1;Parent=MS.gene78446.t1 |
| Gene Sequence |
| Protein sequence |
