Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78473.t1 | GAU11163.1 | 92.3 | 273 | 21 | 0 | 1 | 273 | 261 | 533 | 6.20E-142 | 513.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78473.t1 | A3KPF2 | 74.1 | 266 | 61 | 2 | 1 | 266 | 271 | 528 | 1.6e-109 | 397.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78473.t1 | A0A2Z6LGD2 | 92.3 | 273 | 21 | 0 | 1 | 273 | 261 | 533 | 4.5e-142 | 513.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049419 | MS.gene78473 | 0.821509 | 3.89E-53 | -1.69E-46 |
| MS.gene049983 | MS.gene78473 | -0.817227 | 3.68E-52 | -1.69E-46 |
| MS.gene056272 | MS.gene78473 | -0.810381 | 1.19E-50 | -1.69E-46 |
| MS.gene056776 | MS.gene78473 | -0.805582 | 1.25E-49 | -1.69E-46 |
| MS.gene056779 | MS.gene78473 | -0.802488 | 5.48E-49 | -1.69E-46 |
| MS.gene058279 | MS.gene78473 | -0.811018 | 8.64E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78473.t1 | MTR_4g119900 | 91.575 | 273 | 23 | 0 | 1 | 273 | 262 | 534 | 0.0 | 524 |
| MS.gene78473.t1 | MTR_4g119900 | 89.011 | 273 | 23 | 1 | 1 | 273 | 262 | 527 | 1.16e-178 | 503 |
| MS.gene78473.t1 | MTR_2g436780 | 79.121 | 273 | 56 | 1 | 1 | 272 | 264 | 536 | 5.30e-159 | 453 |
| MS.gene78473.t1 | MTR_2g436780 | 78.755 | 273 | 54 | 2 | 1 | 272 | 264 | 533 | 1.41e-155 | 444 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78473.t1 | AT5G49020 | 74.060 | 266 | 61 | 2 | 1 | 266 | 271 | 528 | 3.58e-143 | 412 |
| MS.gene78473.t1 | AT5G49020 | 74.060 | 266 | 61 | 2 | 1 | 266 | 269 | 526 | 3.66e-143 | 412 |
| MS.gene78473.t1 | AT3G06930 | 76.639 | 244 | 55 | 1 | 1 | 242 | 268 | 511 | 5.60e-138 | 399 |
| MS.gene78473.t1 | AT3G06930 | 75.918 | 245 | 56 | 1 | 1 | 242 | 268 | 512 | 1.84e-136 | 395 |
Find 0 sgRNAs with CRISPR-Local
Find 268 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CATTATTAGAAAATAAAAAT+GGG | - | 32578:2226-2245 | None:intergenic | 10.0% |
| !! | TATTAAAATAAATCTAATGA+TGG | - | 32578:2691-2710 | None:intergenic | 10.0% |
| !!! | GTTTTTTAGAAATTTATTAA+AGG | + | 32578:2066-2085 | MS.gene78473:intron | 10.0% |
| !!! | TCATTTAACATTTTTTAAAA+AGG | - | 32578:3993-4012 | None:intergenic | 10.0% |
| !!! | TTTTTTTTTCTTTTCATTAT+TGG | + | 32578:4057-4076 | MS.gene78473:intron | 10.0% |
| !! | AAAGAAACTAAACAAAATTT+AGG | - | 32578:856-875 | None:intergenic | 15.0% |
| !! | GCATTATTAGAAAATAAAAA+TGG | - | 32578:2227-2246 | None:intergenic | 15.0% |
| !! | TTTATGAGTAAAAAAAATGA+AGG | - | 32578:2483-2502 | None:intergenic | 15.0% |
| !!! | ACAATATATCATTTAGAATA+AGG | - | 32578:908-927 | None:intergenic | 15.0% |
| !!! | ACTTATTGTATTTTTTTTTG+TGG | + | 32578:2717-2736 | MS.gene78473:intron | 15.0% |
| !!! | CAACAATAATATATTTTGAA+TGG | - | 32578:1018-1037 | None:intergenic | 15.0% |
| !!! | TATATTTTGAATGGAAAAAA+AGG | - | 32578:1009-1028 | None:intergenic | 15.0% |
| !! | AAACACCACTAAATTAAAAA+CGG | - | 32578:1135-1154 | None:intergenic | 20.0% |
| !! | AAGGAAAAAAAAAACATTGA+AGG | - | 32578:990-1009 | None:intergenic | 20.0% |
| !! | AATTGAATTATCAAAACCAT+TGG | - | 32578:736-755 | None:intergenic | 20.0% |
| !! | AATTTATTAAAGGTTACTTG+TGG | + | 32578:2076-2095 | MS.gene78473:intron | 20.0% |
| !! | ACAATATATTTAACATTGTC+TGG | + | 32578:3353-3372 | MS.gene78473:CDS | 20.0% |
| !! | ATTGAATTATCAAAACCATT+GGG | - | 32578:735-754 | None:intergenic | 20.0% |
| !! | GAAAAAAGATCAAATTTAAC+TGG | - | 32578:711-730 | None:intergenic | 20.0% |
| !! | GTTTATTGAAATTGCAAATA+AGG | + | 32578:1310-1329 | MS.gene78473:intron | 20.0% |
| !! | TATATTTATCAAAGTTTGTC+AGG | + | 32578:1550-1569 | MS.gene78473:intron | 20.0% |
| !! | TTAGTAACTAAAGTTCAATT+TGG | - | 32578:2433-2452 | None:intergenic | 20.0% |
| !!! | AACTGCATTTTTCAATTTTT+TGG | + | 32578:1055-1074 | MS.gene78473:intron | 20.0% |
| !!! | AGGTTTTAATAAATAGTTGT+TGG | - | 32578:2317-2336 | None:intergenic | 20.0% |
| !!! | GTACTTCTTTTTTTTTTTTG+TGG | - | 32578:1788-1807 | None:intergenic | 20.0% |
| !!! | TAACAAGTTTTTATTCAACT+AGG | + | 32578:3126-3145 | MS.gene78473:intron | 20.0% |
| !!! | TATGTTTATTTTTGAATGAC+AGG | - | 32578:2337-2356 | None:intergenic | 20.0% |
| !!! | TGATGATCATTGTATTTTTT+TGG | + | 32578:2750-2769 | MS.gene78473:intron | 20.0% |
| !!! | TTAAACCGTTTTTAATTTAG+TGG | + | 32578:1127-1146 | MS.gene78473:intron | 20.0% |
| !!! | TTTTTCAGAAGAAAAAAAGA+TGG | - | 32578:1086-1105 | None:intergenic | 20.0% |
| ! | AAAGTAGAACTTGAAACTAA+GGG | + | 32578:3675-3694 | MS.gene78473:intron | 25.0% |
| ! | AATGAAAGAAATGTGAACAT+GGG | - | 32578:1446-1465 | None:intergenic | 25.0% |
| ! | AATGATATATTGTTTCACCA+TGG | + | 32578:915-934 | MS.gene78473:intron | 25.0% |
| ! | AATTAAATCTGAGTAAGTGA+CGG | - | 32578:1602-1621 | None:intergenic | 25.0% |
| ! | AATTCAACTGTCTATTCAAA+TGG | + | 32578:1618-1637 | MS.gene78473:intron | 25.0% |
| ! | AATTTGCATTAGCTAAAATG+TGG | + | 32578:3454-3473 | MS.gene78473:intron | 25.0% |
| ! | ACTTCTGTTAACAATATTCA+GGG | - | 32578:1681-1700 | None:intergenic | 25.0% |
| ! | AGACTTTATTACTAATGAAG+AGG | - | 32578:3107-3126 | None:intergenic | 25.0% |
| ! | ATAAAAATAAGTTCCGTTCA+AGG | - | 32578:2165-2184 | None:intergenic | 25.0% |
| ! | ATTTGCATTAGCTAAAATGT+GGG | + | 32578:3455-3474 | MS.gene78473:intron | 25.0% |
| ! | CAAGATTAATAAATCAGTAC+GGG | - | 32578:1876-1895 | None:intergenic | 25.0% |
| ! | GCAAGATTAATAAATCAGTA+CGG | - | 32578:1877-1896 | None:intergenic | 25.0% |
| ! | GTATATCCTGTAAAAGTTAA+GGG | - | 32578:4259-4278 | None:intergenic | 25.0% |
| ! | TAATGAAAGAAATGTGAACA+TGG | - | 32578:1447-1466 | None:intergenic | 25.0% |
| ! | TACTTCTGTTAACAATATTC+AGG | - | 32578:1682-1701 | None:intergenic | 25.0% |
| ! | TATATTTAACATTGTCTGGT+TGG | + | 32578:3357-3376 | MS.gene78473:intron | 25.0% |
| ! | TGGTTTGATGTATTATTCAA+TGG | + | 32578:3069-3088 | MS.gene78473:CDS | 25.0% |
| ! | TGTATATCCTGTAAAAGTTA+AGG | - | 32578:4260-4279 | None:intergenic | 25.0% |
| ! | TGTTTGGATAAGCTTAAAAA+AGG | + | 32578:948-967 | MS.gene78473:intron | 25.0% |
| ! | TTGAATTATCAAAACCATTG+GGG | - | 32578:734-753 | None:intergenic | 25.0% |
| ! | TTGATGTATTATTCAATGGA+AGG | + | 32578:3073-3092 | MS.gene78473:CDS | 25.0% |
| !! | AACATTCAACACATATGTTT+TGG | - | 32578:814-833 | None:intergenic | 25.0% |
| !! | ATCATTATTGAGTTGTTCTT+TGG | + | 32578:2784-2803 | MS.gene78473:intron | 25.0% |
| !! | ATTTCAAGGATATTTTTCTC+AGG | + | 32578:2029-2048 | MS.gene78473:CDS | 25.0% |
| !! | GAAGACAATTGATAATTAGA+TGG | - | 32578:1228-1247 | None:intergenic | 25.0% |
| !! | TTATTTTCTAATAATGCCTG+TGG | + | 32578:2230-2249 | MS.gene78473:intron | 25.0% |
| !! | TTCTTTTCATTATTGGACAA+TGG | + | 32578:4064-4083 | MS.gene78473:intron | 25.0% |
| !! | TTTATTCCTGTATTTTACGT+AGG | + | 32578:2615-2634 | MS.gene78473:intron | 25.0% |
| !!! | AAAAAGCCATCTTTTATTTC+TGG | + | 32578:2834-2853 | MS.gene78473:intron | 25.0% |
| !!! | ATCATTGTATTTTTTTGGAC+TGG | + | 32578:2755-2774 | MS.gene78473:intron | 25.0% |
| !!! | GTTTTAGAAAGCAAATGTTT+TGG | - | 32578:1810-1829 | None:intergenic | 25.0% |
| !!! | TGCATTTTTCAATTTTTTGG+TGG | + | 32578:1058-1077 | MS.gene78473:intron | 25.0% |
| !!! | TTCTTAACGAACGTATTTTT+TGG | + | 32578:3753-3772 | MS.gene78473:intron | 25.0% |
| AAATGACCTACGTAAAATAC+AGG | - | 32578:2624-2643 | None:intergenic | 30.0% | |
| AAATTTACAGTACTGTGCAA+AGG | + | 32578:3192-3211 | MS.gene78473:intron | 30.0% | |
| AACAAATATTCATCCGTGAA+AGG | - | 32578:1293-1312 | None:intergenic | 30.0% | |
| AAGTGATCAAAATTGGGAAT+AGG | + | 32578:3960-3979 | MS.gene78473:intron | 30.0% | |
| ACAATAGACCATTTGTACAA+AGG | - | 32578:2872-2891 | None:intergenic | 30.0% | |
| AGTCCTTGAAAAATCATACT+TGG | - | 32578:881-900 | None:intergenic | 30.0% | |
| ATATCGTTCCTTTGTACAAA+TGG | + | 32578:2861-2880 | MS.gene78473:intron | 30.0% | |
| ATATTGTTTCACCATGGTAT+AGG | + | 32578:921-940 | MS.gene78473:intron | 30.0% | |
| ATGAAAGAAATGTGAACATG+GGG | - | 32578:1445-1464 | None:intergenic | 30.0% | |
| ATGCAGTTTAGTGATTTCTA+AGG | - | 32578:1043-1062 | None:intergenic | 30.0% | |
| ATTTGGAAGATGAAATTCAG+TGG | + | 32578:3701-3720 | MS.gene78473:intron | 30.0% | |
| CAAAGTAGAACTTGAAACTA+AGG | + | 32578:3674-3693 | MS.gene78473:intron | 30.0% | |
| CCAGTAATAAATTCAAGGTT+AGG | - | 32578:1252-1271 | None:intergenic | 30.0% | |
| CCTAACCTTGAATTTATTAC+TGG | + | 32578:1249-1268 | MS.gene78473:CDS | 30.0% | |
| CTGACTAAGTGATCAAAATT+GGG | + | 32578:3954-3973 | MS.gene78473:intron | 30.0% | |
| CTTCACCAGTAATAAATTCA+AGG | - | 32578:1257-1276 | None:intergenic | 30.0% | |
| CTTGAAACTAAGGGAAAATT+TGG | + | 32578:3684-3703 | MS.gene78473:intron | 30.0% | |
| CTTGAATTTATTACTGGTGA+AGG | + | 32578:1255-1274 | MS.gene78473:intron | 30.0% | |
| GAAAGTTGTTGCATTATTTC+TGG | - | 32578:4308-4327 | None:intergenic | 30.0% | |
| GACAATGCATAATATATGCA+AGG | + | 32578:1740-1759 | MS.gene78473:intron | 30.0% | |
| GATTATGACAATTCTACCAA+GGG | + | 32578:639-658 | MS.gene78473:intron | 30.0% | |
| TACAGGAATAAAACACTCTT+AGG | - | 32578:2607-2626 | None:intergenic | 30.0% | |
| TCTGACTAAGTGATCAAAAT+TGG | + | 32578:3953-3972 | MS.gene78473:intron | 30.0% | |
| TGAAAAACTAGACAAAGTCT+TGG | + | 32578:4106-4125 | MS.gene78473:intron | 30.0% | |
| TGAATTATCAAAACCATTGG+GGG | - | 32578:733-752 | None:intergenic | 30.0% | |
| TGATTATGACAATTCTACCA+AGG | + | 32578:638-657 | MS.gene78473:intron | 30.0% | |
| TGTCAATTTGAAAAGGTAGA+TGG | - | 32578:683-702 | None:intergenic | 30.0% | |
| TTGTACAAATGGTCTATTGT+TGG | + | 32578:2872-2891 | MS.gene78473:intron | 30.0% | |
| TTTATTGCTATACTAGCATG+AGG | + | 32578:3402-3421 | MS.gene78473:intron | 30.0% | |
| TTTGCATTAGCTAAAATGTG+GGG | + | 32578:3456-3475 | MS.gene78473:intron | 30.0% | |
| TTTGGAAGATGAAATTCAGT+GGG | + | 32578:3702-3721 | MS.gene78473:intron | 30.0% | |
| ! | GGAAGTATGTCAATTTGAAA+AGG | - | 32578:690-709 | None:intergenic | 30.0% |
| ! | GTATTTTACGTAGGTCATTT+TGG | + | 32578:2624-2643 | MS.gene78473:intron | 30.0% |
| ! | TAAACCAATTGCTATTGTTC+AGG | + | 32578:1945-1964 | MS.gene78473:intron | 30.0% |
| ! | TAGCCAAGTATGATTTTTCA+AGG | + | 32578:875-894 | MS.gene78473:intron | 30.0% |
| !! | GTTTGTTGATAATGCTAATG+AGG | + | 32578:1389-1408 | MS.gene78473:intron | 30.0% |
| !!! | TTTTTTACTCATAAAGCCTG+TGG | + | 32578:2488-2507 | MS.gene78473:intron | 30.0% |
| !!! | TTTTTTTTTTTGTGGCGTCT+GGG | - | 32578:1780-1799 | None:intergenic | 30.0% |
| !!! | TTTTTTTTTTTTGTGGCGTC+TGG | - | 32578:1781-1800 | None:intergenic | 30.0% |
| AACTCTCTTTCTATGTGTCT+TGG | + | 32578:582-601 | MS.gene78473:intron | 35.0% | |
| AAGTCTAGTACATGGAACAT+TGG | - | 32578:2549-2568 | None:intergenic | 35.0% | |
| AATACCTGTGTTTGTACAAG+TGG | - | 32578:3603-3622 | None:intergenic | 35.0% | |
| AATCCACTTTACGAAGTACA+GGG | + | 32578:4182-4201 | MS.gene78473:intron | 35.0% | |
| ACCACTGAAATTGCAATAGA+TGG | - | 32578:776-795 | None:intergenic | 35.0% | |
| ACCATCTATTGCAATTTCAG+TGG | + | 32578:772-791 | MS.gene78473:intron | 35.0% | |
| ACTAGACTTCGGTAAAATGA+AGG | + | 32578:2560-2579 | MS.gene78473:CDS | 35.0% | |
| AGACTTCGTTTGGAAATTGT+TGG | + | 32578:2113-2132 | MS.gene78473:intron | 35.0% | |
| AGTCTAGTACATGGAACATT+GGG | - | 32578:2548-2567 | None:intergenic | 35.0% | |
| ATCCAGCCAGAAATAAAAGA+TGG | - | 32578:2843-2862 | None:intergenic | 35.0% | |
| ATGTTCCATGTACTAGACTT+CGG | + | 32578:2549-2568 | MS.gene78473:CDS | 35.0% | |
| CAGAGATCACAGTATGAATT+CGG | - | 32578:3937-3956 | None:intergenic | 35.0% | |
| CCAAACAAAATCCTATACCA+TGG | - | 32578:935-954 | None:intergenic | 35.0% | |
| GGAAAACAGTATCATTTCAG+GGG | - | 32578:1189-1208 | None:intergenic | 35.0% | |
| GGATATACATATCCAATCTC+AGG | + | 32578:4271-4290 | MS.gene78473:intron | 35.0% | |
| GGGAAAACAGTATCATTTCA+GGG | - | 32578:1190-1209 | None:intergenic | 35.0% | |
| GGTTGAGACATTCTATAGTA+GGG | - | 32578:3543-3562 | None:intergenic | 35.0% | |
| GTGATCTGGTCAAAATTCAT+TGG | - | 32578:2957-2976 | None:intergenic | 35.0% | |
| GTTCTTCTAATTCCTGAGAT+TGG | - | 32578:4286-4305 | None:intergenic | 35.0% | |
| TCAATCTGAGCACATGAATT+AGG | - | 32578:4332-4351 | None:intergenic | 35.0% | |
| TGAATTCGGTAAAAAGAAGC+TGG | - | 32578:3923-3942 | None:intergenic | 35.0% | |
| TGCATAATATATGCAAGGTC+CGG | + | 32578:1745-1764 | MS.gene78473:intron | 35.0% | |
| TGGCAGCAACAAAACTATTA+TGG | + | 32578:1976-1995 | MS.gene78473:CDS | 35.0% | |
| TGGTTGAGACATTCTATAGT+AGG | - | 32578:3544-3563 | None:intergenic | 35.0% | |
| TGTATAACTCTGTGCATTGT+GGG | - | 32578:3336-3355 | None:intergenic | 35.0% | |
| TTGGAAGATGAAATTCAGTG+GGG | + | 32578:3703-3722 | MS.gene78473:intron | 35.0% | |
| TTGTATAACTCTGTGCATTG+TGG | - | 32578:3337-3356 | None:intergenic | 35.0% | |
| ! | ACAGGGGTTTAATTGTTTTC+AGG | + | 32578:4199-4218 | MS.gene78473:intron | 35.0% |
| ! | AGCATTGAAAGAACAGCATA+AGG | - | 32578:2921-2940 | None:intergenic | 35.0% |
| ! | AGGTTACTTGTGGTTTTCTA+TGG | + | 32578:2086-2105 | MS.gene78473:intron | 35.0% |
| ! | CCATGGTATAGGATTTTGTT+TGG | + | 32578:932-951 | MS.gene78473:intron | 35.0% |
| ! | GGTTACTTGTGGTTTTCTAT+GGG | + | 32578:2087-2106 | MS.gene78473:intron | 35.0% |
| ! | TTTTACCGAAGTCTAGTACA+TGG | - | 32578:2557-2576 | None:intergenic | 35.0% |
| !!! | CATGTTTTAGAATTGCACCA+TGG | + | 32578:1842-1861 | MS.gene78473:intron | 35.0% |
| !!! | TTTGATCTTTTTTCCCCCAA+TGG | + | 32578:717-736 | MS.gene78473:intron | 35.0% |
| !!! | TTTTTTTTTTGTGGCGTCTG+GGG | - | 32578:1779-1798 | None:intergenic | 35.0% |
| AACCAATCACAGCAATGTGT+GGG | - | 32578:3824-3843 | None:intergenic | 40.0% | |
| AGATGGTTACAAACACTGCA+GGG | - | 32578:1211-1230 | None:intergenic | 40.0% | |
| AGCCAATTTATGTCATGGCA+GGG | + | 32578:3279-3298 | MS.gene78473:CDS | 40.0% | |
| ATCCACTTTACGAAGTACAG+GGG | + | 32578:4183-4202 | MS.gene78473:intron | 40.0% | |
| ATGAAATTCAGTGGGGAAGA+TGG | + | 32578:3710-3729 | MS.gene78473:intron | 40.0% | |
| ATGACAATTCTACCAAGGGA+TGG | + | 32578:643-662 | MS.gene78473:intron | 40.0% | |
| CAACAGACTAGAGATGAAAG+CGG | - | 32578:4132-4151 | None:intergenic | 40.0% | |
| CAATCCACTTTACGAAGTAC+AGG | + | 32578:4181-4200 | MS.gene78473:intron | 40.0% | |
| CAGATCACTCTTTGTTCTGT+AGG | + | 32578:2969-2988 | MS.gene78473:intron | 40.0% | |
| CATAATATATGCAAGGTCCG+GGG | + | 32578:1747-1766 | MS.gene78473:intron | 40.0% | |
| CTACAGAACAAAGAGTGATC+TGG | - | 32578:2971-2990 | None:intergenic | 40.0% | |
| CTACCGGAAAAATGTTTCCT+GGG | + | 32578:543-562 | MS.gene78473:CDS | 40.0% | |
| CTCTCAGCCAATTTATGTCA+TGG | + | 32578:3274-3293 | MS.gene78473:CDS | 40.0% | |
| GACTTAGAAATGCACTCTTC+AGG | + | 32578:2365-2384 | MS.gene78473:intron | 40.0% | |
| GCATAATATATGCAAGGTCC+GGG | + | 32578:1746-1765 | MS.gene78473:intron | 40.0% | |
| GGCGGCAGTTTAAAAAAGAA+GGG | + | 32578:1525-1544 | MS.gene78473:intron | 40.0% | |
| GGGGAAAACAGTATCATTTC+AGG | - | 32578:1191-1210 | None:intergenic | 40.0% | |
| GTCTAGTACATGGAACATTG+GGG | - | 32578:2547-2566 | None:intergenic | 40.0% | |
| TACCGGAAAAATGTTTCCTG+GGG | + | 32578:544-563 | MS.gene78473:CDS | 40.0% | |
| TAGATGGTTACAAACACTGC+AGG | - | 32578:1212-1231 | None:intergenic | 40.0% | |
| TAGTGACTTACAATGACCAC+AGG | - | 32578:2249-2268 | None:intergenic | 40.0% | |
| TCAACCACTTGTACAAACAC+AGG | + | 32578:3596-3615 | MS.gene78473:CDS | 40.0% | |
| TCTAGTACATGGAACATTGG+GGG | - | 32578:2546-2565 | None:intergenic | 40.0% | |
| TGGCGGCAGTTTAAAAAAGA+AGG | + | 32578:1524-1543 | MS.gene78473:intron | 40.0% | |
| TGTCCAGATTTCTCCTTGAA+CGG | + | 32578:2149-2168 | MS.gene78473:intron | 40.0% | |
| TTACTGGTGAAGGATTCACA+TGG | + | 32578:1265-1284 | MS.gene78473:intron | 40.0% | |
| TTTACAGTACTGTGCAAAGG+TGG | + | 32578:3195-3214 | MS.gene78473:intron | 40.0% | |
| TTTACTCATAAAGCCTGTGG+TGG | + | 32578:2491-2510 | MS.gene78473:intron | 40.0% | |
| ! | CAGTGACCCTTAACTTTTAC+AGG | + | 32578:4250-4269 | MS.gene78473:intron | 40.0% |
| ! | TGGGCTAATGGATAAACTTG+TGG | - | 32578:3564-3583 | None:intergenic | 40.0% |
| ! | TTGATTTGACACCCTTACAC+GGG | + | 32578:2001-2020 | MS.gene78473:CDS | 40.0% |
| !! | GTTGATTTGACACCCTTACA+CGG | + | 32578:2000-2019 | MS.gene78473:CDS | 40.0% |
| !! | TGGTTGAGTTTGCTGATCTT+GGG | - | 32578:3583-3602 | None:intergenic | 40.0% |
| !! | TTTGACTTGTGTATCCCTTC+TGG | + | 32578:3778-3797 | MS.gene78473:intron | 40.0% |
| !!! | AGCCATCTTTTATTTCTGGC+TGG | + | 32578:2838-2857 | MS.gene78473:intron | 40.0% |
| AAATTCAGTGGGGAAGATGG+AGG | + | 32578:3713-3732 | MS.gene78473:intron | 45.0% | |
| AACCCCTGTACTTCGTAAAG+TGG | - | 32578:4188-4207 | None:intergenic | 45.0% | |
| AATCTCATGGCAAAGCCAGA+AGG | - | 32578:3796-3815 | None:intergenic | 45.0% | |
| AATTTATGTCATGGCAGGGC+AGG | + | 32578:3283-3302 | MS.gene78473:CDS | 45.0% | |
| ACAGCGTAACTGGTACCAAT+GGG | - | 32578:3249-3268 | None:intergenic | 45.0% | |
| ACAGTATCATTTCAGGGGCA+CGG | - | 32578:1184-1203 | None:intergenic | 45.0% | |
| ACATGCTAACCCATGTACTC+TGG | - | 32578:3049-3068 | None:intergenic | 45.0% | |
| ACCAATCACAGCAATGTGTG+GGG | - | 32578:3823-3842 | None:intergenic | 45.0% | |
| AGGGCCTGAACAATAGCAAT+TGG | - | 32578:1952-1971 | None:intergenic | 45.0% | |
| ATCTCATGGCAAAGCCAGAA+GGG | - | 32578:3795-3814 | None:intergenic | 45.0% | |
| ATCTCGCAATAACCATCCCT+TGG | - | 32578:658-677 | None:intergenic | 45.0% | |
| CAACCAATCACAGCAATGTG+TGG | - | 32578:3825-3844 | None:intergenic | 45.0% | |
| CACACATTGCTGTGATTGGT+TGG | + | 32578:3823-3842 | MS.gene78473:intron | 45.0% | |
| CAGCCAATTTATGTCATGGC+AGG | + | 32578:3278-3297 | MS.gene78473:CDS | 45.0% | |
| CAGTACGGGAATTCTATCCA+TGG | - | 32578:1862-1881 | None:intergenic | 45.0% | |
| CCTACCGGAAAAATGTTTCC+TGG | + | 32578:542-561 | MS.gene78473:CDS | 45.0% | |
| CGCTTTCATCTCTAGTCTGT+TGG | + | 32578:4130-4149 | MS.gene78473:intron | 45.0% | |
| CTATGGGAGTAGACTTCGTT+TGG | + | 32578:2103-2122 | MS.gene78473:intron | 45.0% | |
| CTTATGTCATTGCCAGGGAT+AGG | + | 32578:510-529 | MS.gene78473:CDS | 45.0% | |
| GATAGGTTTCTCACTCCTAC+CGG | + | 32578:527-546 | MS.gene78473:CDS | 45.0% | |
| GATGGAGGAAGAAGTGATGT+AGG | + | 32578:3728-3747 | MS.gene78473:intron | 45.0% | |
| GATGGTTACAAACACTGCAG+GGG | - | 32578:1210-1229 | None:intergenic | 45.0% | |
| GATTCACATGGCACCTTTCA+CGG | + | 32578:1277-1296 | MS.gene78473:intron | 45.0% | |
| GGAAAAATGTTTCCTGGGGT+GGG | + | 32578:548-567 | MS.gene78473:CDS | 45.0% | |
| GTTCCGTTCAAGGAGAAATC+TGG | - | 32578:2155-2174 | None:intergenic | 45.0% | |
| TAAATTTACCTTCCCACCCC+AGG | - | 32578:563-582 | None:intergenic | 45.0% | |
| TACCAACTGAGCTAAGCTCA+CGG | - | 32578:1718-1737 | None:intergenic | 45.0% | |
| TCTTGGAGCTTCTTGCATGT+GGG | + | 32578:599-618 | MS.gene78473:intron | 45.0% | |
| TGAAATGCAGTCCCGTGTAA+GGG | - | 32578:2015-2034 | None:intergenic | 45.0% | |
| TGCCCTGCCATGACATAAAT+TGG | - | 32578:3284-3303 | None:intergenic | 45.0% | |
| TGTGTGGGGAAGTAATCTCA+TGG | - | 32578:3809-3828 | None:intergenic | 45.0% | |
| TTACACGGGACTGCATTTCA+AGG | + | 32578:2015-2034 | MS.gene78473:CDS | 45.0% | |
| TTAGCTAAAATGTGGGGTCC+TGG | + | 32578:3462-3481 | MS.gene78473:intron | 45.0% | |
| TTGAAATGCAGTCCCGTGTA+AGG | - | 32578:2016-2035 | None:intergenic | 45.0% | |
| ! | ACATTGCTGTGATTGGTTGG+TGG | + | 32578:3826-3845 | MS.gene78473:intron | 45.0% |
| ! | CACCCCAGGAAACATTTTTC+CGG | - | 32578:549-568 | None:intergenic | 45.0% |
| ! | CCAGGAAACATTTTTCCGGT+AGG | - | 32578:545-564 | None:intergenic | 45.0% |
| ! | GGAGTCTTATGTCATTGCCA+GGG | + | 32578:505-524 | MS.gene78473:CDS | 45.0% |
| ! | GTTTGCTGATCTTGGGCTAA+TGG | - | 32578:3576-3595 | None:intergenic | 45.0% |
| ! | TGAGCTTAGCTCAGTTGGTA+AGG | + | 32578:1718-1737 | MS.gene78473:intron | 45.0% |
| ! | TGCACTCTTCAGGTTCAACA+TGG | + | 32578:2375-2394 | MS.gene78473:intron | 45.0% |
| ! | TGGAGTCTTATGTCATTGCC+AGG | + | 32578:504-523 | MS.gene78473:CDS | 45.0% |
| !! | AACTGGTACCAATGGGTTGT+GGG | - | 32578:3242-3261 | None:intergenic | 45.0% |
| !! | AAGTGACGGACACTTTAGGT+TGG | - | 32578:1588-1607 | None:intergenic | 45.0% |
| !! | GAGTAAGTGACGGACACTTT+AGG | - | 32578:1592-1611 | None:intergenic | 45.0% |
| !! | GAGTACATGGGTTAGCATGT+TGG | + | 32578:3049-3068 | MS.gene78473:CDS | 45.0% |
| !! | GTGGTTGAGTTTGCTGATCT+TGG | - | 32578:3584-3603 | None:intergenic | 45.0% |
| !! | GTTTTGTTGCTGCCAGAACA+GGG | - | 32578:1971-1990 | None:intergenic | 45.0% |
| !! | TAACTGGTACCAATGGGTTG+TGG | - | 32578:3243-3262 | None:intergenic | 45.0% |
| !!! | AGTTTTGTTGCTGCCAGAAC+AGG | - | 32578:1972-1991 | None:intergenic | 45.0% |
| AAATGTTTCCTGGGGTGGGA+AGG | + | 32578:552-571 | MS.gene78473:CDS | 50.0% | |
| ACAGAGGCAACGAATCTCAG+AGG | - | 32578:3021-3040 | None:intergenic | 50.0% | |
| ACCAACTGAGCTAAGCTCAC+GGG | - | 32578:1717-1736 | None:intergenic | 50.0% | |
| AGGAGTGAGAAACCTATCCC+TGG | - | 32578:525-544 | None:intergenic | 50.0% | |
| ATGGCAGGGCAGGAAATTAC+CGG | + | 32578:3293-3312 | MS.gene78473:CDS | 50.0% | |
| CACAGCGTAACTGGTACCAA+TGG | - | 32578:3250-3269 | None:intergenic | 50.0% | |
| CATGGGGTCTCTACATGCAT+AGG | - | 32578:1429-1448 | None:intergenic | 50.0% | |
| CCATCCATCCACCAAGTGTA+TGG | - | 32578:3866-3885 | None:intergenic | 50.0% | |
| CGGAAAAATGTTTCCTGGGG+TGG | + | 32578:547-566 | MS.gene78473:CDS | 50.0% | |
| CTATTGTTCAGGCCCTGTTC+TGG | + | 32578:1956-1975 | MS.gene78473:intron | 50.0% | |
| CTGAGATTCGTTGCCTCTGT+GGG | + | 32578:3021-3040 | MS.gene78473:CDS | 50.0% | |
| GAGAGAGAACACAGCGTAAC+TGG | - | 32578:3259-3278 | None:intergenic | 50.0% | |
| GGCAATCAAATGAAGCCTGC+CGG | - | 32578:3315-3334 | None:intergenic | 50.0% | |
| GGGGGAGCTATTAGCAATCT+TGG | - | 32578:2528-2547 | None:intergenic | 50.0% | |
| GTCTTGGAGCTTCTTGCATG+TGG | + | 32578:598-617 | MS.gene78473:intron | 50.0% | |
| GTTCCCATCCACCATACACT+TGG | + | 32578:3852-3871 | MS.gene78473:intron | 50.0% | |
| TCCATCCACCAAGTGTATGG+TGG | - | 32578:3863-3882 | None:intergenic | 50.0% | |
| TCCCCACACATTGCTGTGAT+TGG | + | 32578:3819-3838 | MS.gene78473:intron | 50.0% | |
| ! | AAGCTCACGGGGACATGTTT+TGG | - | 32578:1705-1724 | None:intergenic | 50.0% |
| ! | CCATACACTTGGTGGATGGA+TGG | + | 32578:3863-3882 | MS.gene78473:intron | 50.0% |
| ! | TCCACCAAGTGTATGGTGGA+TGG | - | 32578:3859-3878 | None:intergenic | 50.0% |
| ! | TCCACCATACACTTGGTGGA+TGG | + | 32578:3859-3878 | MS.gene78473:intron | 50.0% |
| ! | TCTGAGATTCGTTGCCTCTG+TGG | + | 32578:3020-3039 | MS.gene78473:CDS | 50.0% |
| !! | CCACCAAGTGTATGGTGGAT+GGG | - | 32578:3858-3877 | None:intergenic | 50.0% |
| !! | GATTGTTTTGCCGCTGCAGT+TGG | + | 32578:1504-1523 | MS.gene78473:intron | 50.0% |
| !! | GGATCAAAAGCATCCACCAC+AGG | - | 32578:2507-2526 | None:intergenic | 50.0% |
| ATCCCTCCTTGTTCAGCACC+AGG | - | 32578:3483-3502 | None:intergenic | 55.0% | |
| ATGTACTCTGGTGCCCACAG+AGG | - | 32578:3037-3056 | None:intergenic | 55.0% | |
| CCAACTGAGCTAAGCTCACG+GGG | - | 32578:1716-1735 | None:intergenic | 55.0% | |
| CCCATCCACCATACACTTGG+TGG | + | 32578:3855-3874 | MS.gene78473:intron | 55.0% | |
| CTGGTTCACCCACAACCCAT+TGG | + | 32578:3231-3250 | MS.gene78473:CDS | 55.0% | |
| CTGTGGGCACCAGAGTACAT+GGG | + | 32578:3037-3056 | MS.gene78473:CDS | 55.0% | |
| TAAACTGCCGCCAACTGCAG+CGG | - | 32578:1517-1536 | None:intergenic | 55.0% | |
| TCTGTGGGCACCAGAGTACA+TGG | + | 32578:3036-3055 | MS.gene78473:CDS | 55.0% | |
| ! | GTCCTGGTGCTGAACAAGGA+GGG | + | 32578:3478-3497 | MS.gene78473:CDS | 55.0% |
| ! | TGTTTTGCCGCTGCAGTTGG+CGG | + | 32578:1507-1526 | MS.gene78473:intron | 55.0% |
| !! | CAATGGGTTGTGGGTGAACC+AGG | - | 32578:3233-3252 | None:intergenic | 55.0% |
| AGGTGGCTTACCACTGCTCC+TGG | + | 32578:3212-3231 | MS.gene78473:CDS | 60.0% | |
| CAGGGCAGGAAATTACCGGC+AGG | + | 32578:3297-3316 | MS.gene78473:CDS | 60.0% | |
| CCCCGTGAGCTTAGCTCAGT+TGG | + | 32578:1713-1732 | MS.gene78473:intron | 60.0% | |
| GAGCTTCTTGCATGTGGGCG+TGG | + | 32578:604-623 | MS.gene78473:intron | 60.0% | |
| TGTGGGTGAACCAGGAGCAG+TGG | - | 32578:3225-3244 | None:intergenic | 60.0% | |
| ! | GGTCCTGGTGCTGAACAAGG+AGG | + | 32578:3477-3496 | MS.gene78473:CDS | 60.0% |
| ! | TGGGGTCCTGGTGCTGAACA+AGG | + | 32578:3474-3493 | MS.gene78473:CDS | 60.0% |
| ! | GGCGTCTGGGGTTCGAACCC+CGG | - | 32578:1767-1786 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 32578 | gene | 500 | 4373 | 500 | ID=MS.gene78473 |
| 32578 | mRNA | 500 | 4373 | 500 | ID=MS.gene78473.t1;Parent=MS.gene78473 |
| 32578 | exon | 500 | 573 | 500 | ID=MS.gene78473.t1.exon1;Parent=MS.gene78473.t1 |
| 32578 | CDS | 500 | 573 | 500 | ID=cds.MS.gene78473.t1;Parent=MS.gene78473.t1 |
| 32578 | exon | 1216 | 1270 | 1216 | ID=MS.gene78473.t1.exon2;Parent=MS.gene78473.t1 |
| 32578 | CDS | 1216 | 1270 | 1216 | ID=cds.MS.gene78473.t1;Parent=MS.gene78473.t1 |
| 32578 | exon | 1967 | 2050 | 1967 | ID=MS.gene78473.t1.exon3;Parent=MS.gene78473.t1 |
| 32578 | CDS | 1967 | 2050 | 1967 | ID=cds.MS.gene78473.t1;Parent=MS.gene78473.t1 |
| 32578 | exon | 2504 | 2581 | 2504 | ID=MS.gene78473.t1.exon4;Parent=MS.gene78473.t1 |
| 32578 | CDS | 2504 | 2581 | 2504 | ID=cds.MS.gene78473.t1;Parent=MS.gene78473.t1 |
| 32578 | exon | 2991 | 3094 | 2991 | ID=MS.gene78473.t1.exon5;Parent=MS.gene78473.t1 |
| 32578 | CDS | 2991 | 3094 | 2991 | ID=cds.MS.gene78473.t1;Parent=MS.gene78473.t1 |
| 32578 | exon | 3202 | 3374 | 3202 | ID=MS.gene78473.t1.exon6;Parent=MS.gene78473.t1 |
| 32578 | CDS | 3202 | 3374 | 3202 | ID=cds.MS.gene78473.t1;Parent=MS.gene78473.t1 |
| 32578 | exon | 3466 | 3617 | 3466 | ID=MS.gene78473.t1.exon7;Parent=MS.gene78473.t1 |
| 32578 | CDS | 3466 | 3617 | 3466 | ID=cds.MS.gene78473.t1;Parent=MS.gene78473.t1 |
| 32578 | exon | 4272 | 4373 | 4272 | ID=MS.gene78473.t1.exon8;Parent=MS.gene78473.t1 |
| 32578 | CDS | 4272 | 4373 | 4272 | ID=cds.MS.gene78473.t1;Parent=MS.gene78473.t1 |
| Gene Sequence |
| Protein sequence |
