AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene78487

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene78487.t1 MTR_4g006200 96.761 247 8 0 1 247 69 315 0.0 504
MS.gene78487.t1 MTR_3g006055 58.235 170 23 3 85 247 1 129 1.45e-55 174
MS.gene78487.t1 MTR_4g005800 88.158 76 9 0 122 197 48 123 9.45e-45 147
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene78487.t1 AT3G21200 60.000 245 90 3 1 245 69 305 7.45e-109 317

Find 61 sgRNAs with CRISPR-Local

Find 175 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGTAATGTCTTCCATATTAT+TGG 0.225630 4.2:+93089716 None:intergenic
CTATGTTGATTTGGATTTCC+AGG 0.294434 4.2:-93089679 MS.gene78487:intron
TGAAATTAACACCAATAATA+TGG 0.307435 4.2:-93089727 MS.gene78487:CDS
TCACAGAAGCAAAGATGATA+TGG 0.313832 4.2:-93089342 MS.gene78487:CDS
TGTATATTATTGCTGTAGAT+AGG 0.315510 4.2:-93090001 MS.gene78487:CDS
GCTGCACTTGGATGACTTCC+AGG 0.317388 4.2:-93089976 MS.gene78487:CDS
TTCGTTATTGATTCTGAAGA+TGG 0.354749 4.2:-93091523 MS.gene78487:CDS
ATGGGTAGACCGTTTGGGTT+TGG 0.369113 4.2:-93089323 MS.gene78487:CDS
TTGTAATGTCTATGTTGATT+TGG 0.370501 4.2:-93089688 MS.gene78487:CDS
ACTTTCAACGTTAACCCAAC+AGG 0.382511 4.2:-93091572 MS.gene78487:CDS
ATTTAACTGTATGTCACAAT+TGG 0.386834 4.2:-93089209 MS.gene78487:CDS
AGAGAAGTCACAGATGAAAA+AGG 0.391076 4.2:-93089244 MS.gene78487:CDS
CACAGCGGCTTGTTTCTTTG+TGG 0.392329 4.2:-93090061 MS.gene78487:intron
GATGATATGGGTAGACCGTT+TGG 0.397685 4.2:-93089329 MS.gene78487:CDS
ATGATATGGGTAGACCGTTT+GGG 0.415103 4.2:-93089328 MS.gene78487:CDS
TCCTAACAACGGTTTATTTG+AGG 0.427212 4.2:-93089284 MS.gene78487:CDS
GAACAATTATGGATTTAGCT+AGG 0.431943 4.2:-93091603 None:intergenic
TCTTTGTGGAAGAAGAGGTT+TGG 0.434962 4.2:-93090047 MS.gene78487:CDS
ACTGTATGTCACAATTGGCT+TGG 0.444223 4.2:-93089204 MS.gene78487:CDS
ACCCAACAGGGTTATCCTCT+TGG 0.450020 4.2:-93091559 MS.gene78487:CDS
CTGTATGTCACAATTGGCTT+GGG 0.450082 4.2:-93089203 MS.gene78487:CDS
AGAAAGAAACTTCCATCCTC+TGG 0.456228 4.2:-93089176 MS.gene78487:CDS
AACAATTATGGATTTAGCTA+GGG 0.462844 4.2:-93091602 None:intergenic
ACTCCTCAGTGTACACTTCA+AGG 0.467071 4.2:-93091285 MS.gene78487:CDS
TGTAGATAGGGTGCTGCACT+TGG 0.473744 4.2:-93089988 MS.gene78487:CDS
CAGGGTTATCCTCTTGGTGT+TGG 0.489252 4.2:-93091553 MS.gene78487:CDS
ATTATGGATTTAGCTAGGGT+TGG 0.490791 4.2:-93091598 MS.gene78487:CDS
ACCTCAAATAAACCGTTGTT+AGG 0.493427 4.2:+93089283 None:intergenic
TAACTCACCTTGATCAAAGC+TGG 0.516382 4.2:+93091240 None:intergenic
GTATATTATTGCTGTAGATA+GGG 0.518730 4.2:-93090000 MS.gene78487:CDS
TTTCATCTGTGACTTCTCTA+GGG 0.522593 4.2:+93089248 None:intergenic
ACCAAGAGGATAACCCTGTT+GGG 0.525860 4.2:+93091558 None:intergenic
CATACAGTTAAATGTTGACT+TGG 0.529692 4.2:+93089219 None:intergenic
ACCTTGACATGAAGTGAAGA+GGG 0.536966 4.2:+93091439 None:intergenic
CACCAAGAGGATAACCCTGT+TGG 0.548682 4.2:+93091557 None:intergenic
CCTTCTCAAAATCCAGAGGA+TGG 0.550636 4.2:+93089164 None:intergenic
TTGTTTCTTTGTGGAAGAAG+AGG 0.550656 4.2:-93090052 MS.gene78487:CDS
CACAGAAGCAAAGATGATAT+GGG 0.552316 4.2:-93089341 MS.gene78487:CDS
AACGCATATCCAAACCCAAA+CGG 0.555598 4.2:+93089314 None:intergenic
AATTCTCAGCAAACTCTCGA+AGG 0.558854 4.2:+93089757 None:intergenic
GCAGGATCCAGCTTTGATCA+AGG 0.570718 4.2:-93091247 MS.gene78487:intron
ATTCTCAGCAAACTCTCGAA+GGG 0.571271 4.2:+93089758 None:intergenic
CTTTCAACGTTAACCCAACA+GGG 0.573683 4.2:-93091571 MS.gene78487:CDS
GTGAATGTTATTATCAGTGG+TGG 0.576165 4.2:+93091465 None:intergenic
TCTGTGACTTCTCTAGGGAA+AGG 0.588455 4.2:+93089253 None:intergenic
TTGATCAAAGCTGGATCCTG+CGG 0.589973 4.2:+93091249 None:intergenic
TACCTTGACATGAAGTGAAG+AGG 0.592658 4.2:+93091438 None:intergenic
CCCCTCTTCACTTCATGTCA+AGG 0.595937 4.2:-93091440 MS.gene78487:intron
TATGTCACAATTGGCTTGGG+AGG 0.603045 4.2:-93089200 MS.gene78487:CDS
GGTGTGAATGTTATTATCAG+TGG 0.609297 4.2:+93091462 None:intergenic
TTCTCAGCAAACTCTCGAAG+GGG 0.632254 4.2:+93089759 None:intergenic
AGGAACGCTCACGAAACCGC+AGG 0.635837 4.2:-93091265 MS.gene78487:CDS
AATCGAACACCAACACCAAG+AGG 0.641303 4.2:+93091544 None:intergenic
CTTCTCTAGGGAAAGGAATG+CGG 0.641717 4.2:+93089260 None:intergenic
TCTCAGCAAACTCTCGAAGG+GGG 0.641945 4.2:+93089760 None:intergenic
TGAATGTTATTATCAGTGGT+GGG 0.656145 4.2:+93091466 None:intergenic
GTAACCTTCTCAAAATCCAG+AGG 0.672238 4.2:+93089160 None:intergenic
CTTGACATGAAGTGAAGAGG+GGG 0.679817 4.2:+93091441 None:intergenic
CCTTGACATGAAGTGAAGAG+GGG 0.702259 4.2:+93091440 None:intergenic
GCACTTGGATGACTTCCAGG+AGG 0.711976 4.2:-93089973 MS.gene78487:intron
GTTCCTTGAAGTGTACACTG+AGG 0.794003 4.2:+93091282 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATTCTATGTAAATAAATC+AGG + chr4.2:93091169-93091188 None:intergenic 15.0%
!! AACTAATGTGATATATTATA+TGG + chr4.2:93090167-93090186 None:intergenic 15.0%
!! ACTAAATTAACTAATTCAAA+AGG - chr4.2:93090378-93090397 MS.gene78487:intron 15.0%
!! CTAAATTAACTAATTCAAAA+GGG - chr4.2:93090379-93090398 MS.gene78487:intron 15.0%
!! GGATAACAAATAAATAAAAA+TGG + chr4.2:93091128-93091147 None:intergenic 15.0%
!! TATGATTGAAATAGAAAAAA+GGG + chr4.2:93089236-93089255 None:intergenic 15.0%
!! TTATGATTGAAATAGAAAAA+AGG + chr4.2:93089237-93089256 None:intergenic 15.0%
!! TTATTTACATAGAATTTAAC+TGG - chr4.2:93091172-93091191 MS.gene78487:intron 15.0%
!!! ATTCTAAAATTAAGTTCAAT+TGG - chr4.2:93089960-93089979 MS.gene78487:intron 15.0%
!!! TATTCAAATTTTGAGTTTTT+TGG - chr4.2:93089313-93089332 MS.gene78487:CDS 15.0%
!!! TGATTGATGATTTTTAATTT+TGG - chr4.2:93090408-93090427 MS.gene78487:intron 15.0%
!! TGAAATTAACACCAATAATA+TGG - chr4.2:93091003-93091022 MS.gene78487:intron 20.0%
!!! AGTTGTTTTGTTATATAAGT+TGG - chr4.2:93090881-93090900 MS.gene78487:intron 20.0%
!!! AGTTTTTTGGATGAATTAAT+GGG - chr4.2:93089326-93089345 MS.gene78487:CDS 20.0%
!!! TGATCTTTTAAATGAACAAA+AGG - chr4.2:93090134-93090153 MS.gene78487:intron 20.0%
! AATTTAGTCCCTTAAATTGT+AGG - chr4.2:93089623-93089642 MS.gene78487:intron 25.0%
! AATTTATCCCTAGAAATTCT+CGG + chr4.2:93090459-93090478 None:intergenic 25.0%
! ACTAATTTGACTAACTCAAA+AGG - chr4.2:93089890-93089909 MS.gene78487:intron 25.0%
! AGCATTCTTATAAAAATCAC+TGG - chr4.2:93091260-93091279 MS.gene78487:CDS 25.0%
! AGTAATGTCTTCCATATTAT+TGG + chr4.2:93091017-93091036 None:intergenic 25.0%
! ATATAACAAAACAACTTGCA+AGG + chr4.2:93090877-93090896 None:intergenic 25.0%
! ATTAATGGGATAATTGGAAT+TGG - chr4.2:93089340-93089359 MS.gene78487:CDS 25.0%
! ATTTAACTGTATGTCACAAT+TGG - chr4.2:93091521-93091540 MS.gene78487:CDS 25.0%
! CTAACTTCAAAACAATATTG+AGG - chr4.2:93091308-93091327 MS.gene78487:CDS 25.0%
! GAAGTTAGATTTCTATTTAG+TGG + chr4.2:93091296-93091315 None:intergenic 25.0%
! GTATATTATTGCTGTAGATA+GGG - chr4.2:93090730-93090749 MS.gene78487:intron 25.0%
! TGTATATTATTGCTGTAGAT+AGG - chr4.2:93090729-93090748 MS.gene78487:intron 25.0%
! TTAATTACCGAGAATTTCTA+GGG - chr4.2:93090449-93090468 MS.gene78487:intron 25.0%
! TTAGTATAGATACATATGCA+TGG - chr4.2:93089569-93089588 MS.gene78487:intron 25.0%
! TTGCTGATACTAATTGTAAT+AGG - chr4.2:93090835-93090854 MS.gene78487:intron 25.0%
! TTTAATAAAAATGAAGGGTC+AGG + chr4.2:93090790-93090809 None:intergenic 25.0%
!! TTGTAATGTCTATGTTGATT+TGG - chr4.2:93091042-93091061 MS.gene78487:intron 25.0%
!! TTGTTATCCTTTGATTTAAC+TGG - chr4.2:93091139-93091158 MS.gene78487:intron 25.0%
!!! GAGTTTTTTGGATGAATTAA+TGG - chr4.2:93089325-93089344 MS.gene78487:CDS 25.0%
!!! TTATTTTTGTATCAACCATC+CGG + chr4.2:93090325-93090344 None:intergenic 25.0%
AAAATCACATTAGTTCGTCT+TGG - chr4.2:93089856-93089875 MS.gene78487:intron 30.0%
AAACTAATGTGGTCTATTGT+TGG + chr4.2:93089652-93089671 None:intergenic 30.0%
AAAGTGATTGATGTTGACAA+AGG - chr4.2:93090530-93090549 MS.gene78487:intron 30.0%
AAATGCTGTGTAGATAAATC+AGG + chr4.2:93091202-93091221 None:intergenic 30.0%
ACACAGCAAAACTAACTTAT+CGG + chr4.2:93091335-93091354 None:intergenic 30.0%
CGCATTAATTCCAAGAAAAT+GGG + chr4.2:93089807-93089826 None:intergenic 30.0%
GCTATATGAAACTACAATCA+AGG + chr4.2:93090591-93090610 None:intergenic 30.0%
GGATAATTGGAATTGGAATT+GGG - chr4.2:93089347-93089366 MS.gene78487:intron 30.0%
GGATGAATTAATGGGATAAT+TGG - chr4.2:93089334-93089353 MS.gene78487:CDS 30.0%
GTTAATTACCGAGAATTTCT+AGG - chr4.2:93090448-93090467 MS.gene78487:intron 30.0%
TAAGTTCAATTGGACAATGT+TGG - chr4.2:93089970-93089989 MS.gene78487:intron 30.0%
TAATCAGTTAGTAACAGTGA+AGG - chr4.2:93090032-93090051 MS.gene78487:CDS 30.0%
TATCAGCAAACTAGTAGTAT+AGG + chr4.2:93090824-93090843 None:intergenic 30.0%
TCACAGTTTGAAAAAACCTT+AGG + chr4.2:93090064-93090083 None:intergenic 30.0%
TCGCATTAATTCCAAGAAAA+TGG + chr4.2:93089808-93089827 None:intergenic 30.0%
TGAATGTTATTATCAGTGGT+GGG + chr4.2:93089267-93089286 None:intergenic 30.0%
TGGTTAATGAGTTTCAGTTA+AGG - chr4.2:93090210-93090229 MS.gene78487:intron 30.0%
! AGCATTTTTGTAGTCTAAAG+AGG + chr4.2:93090942-93090961 None:intergenic 30.0%
! ATTGACTCTAAGAGTTAAGA+CGG - chr4.2:93089827-93089846 MS.gene78487:intron 30.0%
! CATACAGTTAAATGTTGACT+TGG + chr4.2:93091514-93091533 None:intergenic 30.0%
! GAGAATTTCTAGGGATAAAT+TGG - chr4.2:93090458-93090477 MS.gene78487:intron 30.0%
! TGTATTTGATTTCCCATTGT+AGG - chr4.2:93091365-93091384 MS.gene78487:intron 30.0%
! TTAGTTTGAATCAAGTGGTT+TGG - chr4.2:93089665-93089684 MS.gene78487:intron 30.0%
!! TTCGTTATTGATTCTGAAGA+TGG - chr4.2:93089207-93089226 MS.gene78487:CDS 30.0%
AAACTACAATCAAGGTCACA+AGG + chr4.2:93090583-93090602 None:intergenic 35.0%
AACAATCTTTGGCCAAACTT+TGG - chr4.2:93090272-93090291 MS.gene78487:intron 35.0%
ACCTCAAATAAACCGTTGTT+AGG + chr4.2:93091450-93091469 None:intergenic 35.0%
AGAGAAGTCACAGATGAAAA+AGG - chr4.2:93091486-93091505 MS.gene78487:CDS 35.0%
CAAAAGGACTAATGTGATTG+AGG - chr4.2:93089906-93089925 MS.gene78487:intron 35.0%
CACAGAAGCAAAGATGATAT+GGG - chr4.2:93091389-93091408 MS.gene78487:intron 35.0%
CCACTTGATTCAAACTAATG+TGG + chr4.2:93089663-93089682 None:intergenic 35.0%
GAGTTGAGGAGAGTAAAAAT+TGG + chr4.2:93089771-93089790 None:intergenic 35.0%
GGGATAATTGGAATTGGAAT+TGG - chr4.2:93089346-93089365 MS.gene78487:CDS 35.0%
GGTGTGAATGTTATTATCAG+TGG + chr4.2:93089271-93089290 None:intergenic 35.0%
GTGAATGTTATTATCAGTGG+TGG + chr4.2:93089268-93089287 None:intergenic 35.0%
TCACAGAAGCAAAGATGATA+TGG - chr4.2:93091388-93091407 MS.gene78487:intron 35.0%
TCCTAACAACGGTTTATTTG+AGG - chr4.2:93091446-93091465 MS.gene78487:CDS 35.0%
TGATTGAGGATTCTCAATGT+TGG - chr4.2:93089920-93089939 MS.gene78487:intron 35.0%
TTCTTGGCTAGAACAATTTG+TGG - chr4.2:93089745-93089764 MS.gene78487:CDS 35.0%
TTTAGTCTCTACAATTGTCC+AGG + chr4.2:93090364-93090383 None:intergenic 35.0%
TTTCATCTGTGACTTCTCTA+GGG + chr4.2:93091485-93091504 None:intergenic 35.0%
! AATTCCAAGAAAATGGGTTC+TGG + chr4.2:93089801-93089820 None:intergenic 35.0%
! ATTACCAGAACCCATTTTCT+TGG - chr4.2:93089794-93089813 MS.gene78487:CDS 35.0%
! ATTTTTACTCTCCTCAACTC+TGG - chr4.2:93089771-93089790 MS.gene78487:CDS 35.0%
! CCACATTAGTTTGAATCAAG+TGG - chr4.2:93089660-93089679 MS.gene78487:intron 35.0%
! TTGACTCTAAGAGTTAAGAC+GGG - chr4.2:93089828-93089847 MS.gene78487:intron 35.0%
! TTGTTTCTTTGTGGAAGAAG+AGG - chr4.2:93090678-93090697 MS.gene78487:intron 35.0%
! TTTTCATCTGTGACTTCTCT+AGG + chr4.2:93091486-93091505 None:intergenic 35.0%
!! CGTTTGTTTTCTCCTAACAA+CGG - chr4.2:93091435-93091454 MS.gene78487:intron 35.0%
!! CTATGTTGATTTGGATTTCC+AGG - chr4.2:93091051-93091070 MS.gene78487:intron 35.0%
!!! TATGTCCTTGTTTTTCAGGA+CGG - chr4.2:93090905-93090924 MS.gene78487:intron 35.0%
AACAAGAAGCTCAACTCAAG+TGG - chr4.2:93090190-93090209 MS.gene78487:intron 40.0%
AACATTGCATTAGTTCGTCC+TGG - chr4.2:93090343-93090362 MS.gene78487:intron 40.0%
AACGCATATCCAAACCCAAA+CGG + chr4.2:93091419-93091438 None:intergenic 40.0%
AATTCTCAGCAAACTCTCGA+AGG + chr4.2:93090976-93090995 None:intergenic 40.0%
ACAATCAAGGTCACAAGGTA+AGG + chr4.2:93090578-93090597 None:intergenic 40.0%
ACCTTGACATGAAGTGAAGA+GGG + chr4.2:93089294-93089313 None:intergenic 40.0%
ACTGTATGTCACAATTGGCT+TGG - chr4.2:93091526-93091545 MS.gene78487:CDS 40.0%
ACTTTCAACGTTAACCCAAC+AGG - chr4.2:93089158-93089177 MS.gene78487:CDS 40.0%
AGAAAGAAACTTCCATCCTC+TGG - chr4.2:93091554-93091573 MS.gene78487:CDS 40.0%
AGGTGCACCAGTTAAATCAA+AGG + chr4.2:93091149-93091168 None:intergenic 40.0%
AGTTTAGCCGCTGAAATTGT+AGG - chr4.2:93090099-93090118 MS.gene78487:intron 40.0%
ATGATATGGGTAGACCGTTT+GGG - chr4.2:93091402-93091421 MS.gene78487:intron 40.0%
ATTCTCAGCAAACTCTCGAA+GGG + chr4.2:93090975-93090994 None:intergenic 40.0%
CAATCAAGGTCACAAGGTAA+GGG + chr4.2:93090577-93090596 None:intergenic 40.0%
CATGCTATGTAGATACATGC+AGG + chr4.2:93091084-93091103 None:intergenic 40.0%
CTTTCAACGTTAACCCAACA+GGG - chr4.2:93089159-93089178 MS.gene78487:CDS 40.0%
CTTTGATCAAGGTGAGTTAG+TGG - chr4.2:93089494-93089513 MS.gene78487:intron 40.0%
GAGTACCTGAGTTTGATTCT+TGG - chr4.2:93089729-93089748 MS.gene78487:CDS 40.0%
GTAACCTTCTCAAAATCCAG+AGG + chr4.2:93091573-93091592 None:intergenic 40.0%
GTGATTGATGTTGACAAAGG+TGG - chr4.2:93090533-93090552 MS.gene78487:intron 40.0%
GTTGGACGCCTACAATTTAA+GGG + chr4.2:93089634-93089653 None:intergenic 40.0%
TAACTCACCTTGATCAAAGC+TGG + chr4.2:93089493-93089512 None:intergenic 40.0%
TACCTTGACATGAAGTGAAG+AGG + chr4.2:93089295-93089314 None:intergenic 40.0%
TCTAGCCAAGAATCAAACTC+AGG + chr4.2:93089737-93089756 None:intergenic 40.0%
TCTTTGTGGAAGAAGAGGTT+TGG - chr4.2:93090683-93090702 MS.gene78487:intron 40.0%
TGCATAAATACAGTCACAGC+AGG + chr4.2:93091241-93091260 None:intergenic 40.0%
TGTTGGACGCCTACAATTTA+AGG + chr4.2:93089635-93089654 None:intergenic 40.0%
TTGCTTCTGTGACCTACAAT+GGG + chr4.2:93091380-93091399 None:intergenic 40.0%
TTTCTATTGTCACTCCACAG+CGG - chr4.2:93090654-93090673 MS.gene78487:intron 40.0%
TTTGCTTCTGTGACCTACAA+TGG + chr4.2:93091381-93091400 None:intergenic 40.0%
! ACAGTGAAGGTACATACCTA+AGG - chr4.2:93090045-93090064 MS.gene78487:CDS 40.0%
! AGTTTTTGCAGTCTGGATTG+AGG - chr4.2:93089422-93089441 MS.gene78487:intron 40.0%
! ATCAAGTGGTTTGGCTTAAG+TGG - chr4.2:93089674-93089693 MS.gene78487:intron 40.0%
! CTGTATGTCACAATTGGCTT+GGG - chr4.2:93091527-93091546 MS.gene78487:CDS 40.0%
! GCCAAAGATTGTTCTAGCTA+GGG + chr4.2:93090265-93090284 None:intergenic 40.0%
! GTCAATCAGTTTTTGCAGTC+TGG - chr4.2:93089415-93089434 MS.gene78487:intron 40.0%
!! ATACATGCAGGAAAAGTACC+TGG + chr4.2:93091072-93091091 None:intergenic 40.0%
!!! TGGCTATGTCCTTGTTTTTC+AGG - chr4.2:93090901-93090920 MS.gene78487:intron 40.0%
AATCGAACACCAACACCAAG+AGG + chr4.2:93089189-93089208 None:intergenic 45.0%
ACACACCGTCCTGAAAAACA+AGG + chr4.2:93090913-93090932 None:intergenic 45.0%
ACAGAACACACAAGCGTAGA+TGG + chr4.2:93090623-93090642 None:intergenic 45.0%
ACCAAGAGGATAACCCTGTT+GGG + chr4.2:93089175-93089194 None:intergenic 45.0%
ACTCCTCAGTGTACACTTCA+AGG - chr4.2:93089445-93089464 MS.gene78487:intron 45.0%
CCTTCTCAAAATCCAGAGGA+TGG + chr4.2:93091569-93091588 None:intergenic 45.0%
CCTTGACATGAAGTGAAGAG+GGG + chr4.2:93089293-93089312 None:intergenic 45.0%
CTTGACATGAAGTGAAGAGG+GGG + chr4.2:93089292-93089311 None:intergenic 45.0%
GATGATATGGGTAGACCGTT+TGG - chr4.2:93091401-93091420 MS.gene78487:intron 45.0%
GCCCTAGCTAGAACAATCTT+TGG - chr4.2:93090261-93090280 MS.gene78487:intron 45.0%
GTTCCTTGAAGTGTACACTG+AGG + chr4.2:93089451-93089470 None:intergenic 45.0%
GTTCTGGTAATCCAGAGTTG+AGG + chr4.2:93089785-93089804 None:intergenic 45.0%
TTCGACGCCTACAATTTCAG+CGG + chr4.2:93090109-93090128 None:intergenic 45.0%
TTCTCAGCAAACTCTCGAAG+GGG + chr4.2:93090974-93090993 None:intergenic 45.0%
TTGATCAAAGCTGGATCCTG+CGG + chr4.2:93089484-93089503 None:intergenic 45.0%
! CTTCTCTAGGGAAAGGAATG+CGG + chr4.2:93091473-93091492 None:intergenic 45.0%
! GGCCAAAGATTGTTCTAGCT+AGG + chr4.2:93090266-93090285 None:intergenic 45.0%
! TCTGTGACTTCTCTAGGGAA+AGG + chr4.2:93091480-93091499 None:intergenic 45.0%
!! CCATCCTCTGGATTTTGAGA+AGG - chr4.2:93091566-93091585 MS.gene78487:CDS 45.0%
!! TATGTCACAATTGGCTTGGG+AGG - chr4.2:93091530-93091549 MS.gene78487:CDS 45.0%
!!! TTGTTTTTCAGGACGGTGTG+TGG - chr4.2:93090912-93090931 MS.gene78487:intron 45.0%
!! ATATAATTTAATAAAAATGA+AGG + chr4.2:93090796-93090815 None:intergenic 5.0%
!! TATAATTTAATAAAAATGAA+GGG + chr4.2:93090795-93090814 None:intergenic 5.0%
ACCCAACAGGGTTATCCTCT+TGG - chr4.2:93089171-93089190 MS.gene78487:CDS 50.0%
ATCAACCATCCGGTTTCCAG+AGG + chr4.2:93090315-93090334 None:intergenic 50.0%
ATCCGGTTTCCAGAGGAAAG+GGG + chr4.2:93090308-93090327 None:intergenic 50.0%
CACAAAGAAACAAGCCGCTG+TGG + chr4.2:93090671-93090690 None:intergenic 50.0%
CACCAAGAGGATAACCCTGT+TGG + chr4.2:93089176-93089195 None:intergenic 50.0%
CATCCGGTTTCCAGAGGAAA+GGG + chr4.2:93090309-93090328 None:intergenic 50.0%
CCCCTCTTCACTTCATGTCA+AGG - chr4.2:93089290-93089309 MS.gene78487:CDS 50.0%
GGATGACTTCCAGGAGGTTA+GGG - chr4.2:93090763-93090782 MS.gene78487:intron 50.0%
TCTCAGCAAACTCTCGAAGG+GGG + chr4.2:93090973-93090992 None:intergenic 50.0%
TGGATGACTTCCAGGAGGTT+AGG - chr4.2:93090762-93090781 MS.gene78487:intron 50.0%
! ATGGGTAGACCGTTTGGGTT+TGG - chr4.2:93091407-93091426 MS.gene78487:intron 50.0%
! CACAGCGGCTTGTTTCTTTG+TGG - chr4.2:93090669-93090688 MS.gene78487:intron 50.0%
! CAGGGTTATCCTCTTGGTGT+TGG - chr4.2:93089177-93089196 MS.gene78487:CDS 50.0%
! GCAGGATCCAGCTTTGATCA+AGG - chr4.2:93089483-93089502 MS.gene78487:intron 50.0%
! GGCTCTGGTAGTCCAAAGTT+TGG + chr4.2:93090287-93090306 None:intergenic 50.0%
! TTCTAGCTAGGGCTCGAACT+CGG + chr4.2:93090254-93090273 None:intergenic 50.0%
!! TGTAGATAGGGTGCTGCACT+TGG - chr4.2:93090742-93090761 MS.gene78487:intron 50.0%
CCATCCGGTTTCCAGAGGAA+AGG + chr4.2:93090310-93090329 None:intergenic 55.0%
GCACTTGGATGACTTCCAGG+AGG - chr4.2:93090757-93090776 MS.gene78487:intron 55.0%
GCTGCACTTGGATGACTTCC+AGG - chr4.2:93090754-93090773 MS.gene78487:intron 55.0%
TCTAGCTAGGGCTCGAACTC+GGG + chr4.2:93090253-93090272 None:intergenic 55.0%
TTTCCAGAGGAAAGGGGCTC+TGG + chr4.2:93090302-93090321 None:intergenic 55.0%
! AGCCCCTTTCCTCTGGAAAC+CGG - chr4.2:93090303-93090322 MS.gene78487:intron 55.0%
! CCTTTCCTCTGGAAACCGGA+TGG - chr4.2:93090307-93090326 MS.gene78487:intron 55.0%
AGGAACGCTCACGAAACCGC+AGG - chr4.2:93089465-93089484 MS.gene78487:intron 60.0%
CTACCAGAGCCCCTTTCCTC+TGG - chr4.2:93090296-93090315 MS.gene78487:intron 60.0%
GCAAACTCTCGAAGGGGGTC+AGG + chr4.2:93090968-93090987 None:intergenic 60.0%
GGGTCAGGTCCCTAACCTCC+TGG + chr4.2:93090775-93090794 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr4.2 gene 93089135 93091617 93089135 ID=MS.gene78487
chr4.2 mRNA 93089135 93091617 93089135 ID=MS.gene78487.t1;Parent=MS.gene78487
chr4.2 exon 93091441 93091617 93091441 ID=MS.gene78487.t1.exon1;Parent=MS.gene78487.t1
chr4.2 CDS 93091441 93091617 93091441 ID=cds.MS.gene78487.t1;Parent=MS.gene78487.t1
chr4.2 exon 93091248 93091328 93091248 ID=MS.gene78487.t1.exon2;Parent=MS.gene78487.t1
chr4.2 CDS 93091248 93091328 93091248 ID=cds.MS.gene78487.t1;Parent=MS.gene78487.t1
chr4.2 exon 93089974 93090078 93089974 ID=MS.gene78487.t1.exon3;Parent=MS.gene78487.t1
chr4.2 CDS 93089974 93090078 93089974 ID=cds.MS.gene78487.t1;Parent=MS.gene78487.t1
chr4.2 exon 93089680 93089829 93089680 ID=MS.gene78487.t1.exon4;Parent=MS.gene78487.t1
chr4.2 CDS 93089680 93089829 93089680 ID=cds.MS.gene78487.t1;Parent=MS.gene78487.t1
chr4.2 exon 93089135 93089365 93089135 ID=MS.gene78487.t1.exon5;Parent=MS.gene78487.t1
chr4.2 CDS 93089135 93089365 93089135 ID=cds.MS.gene78487.t1;Parent=MS.gene78487.t1
Gene Sequence

>MS.gene78487

ATGGATTTAGCTAGGGTTGGAACACTTTCAACGTTAACCCAACAGGGTTATCCTCTTGGTGTTGGTGTTCGATTCGTTATTGATTCTGAAGATGGAAACCCTTTTTTCTATTTCAATCATAATGCTATTCCCACCACTGATAATAACATTCACACCCCCTCTTCACTTCATGTCAAGGTATTCAAATTTTGAGTTTTTTGGATGAATTAATGGGATAATTGGAATTGGAATTGGGTTTTTGATTTTGTTTTTGATGCATTGTATGTGTTTGTGTTTTTGTGTCAATCAGTTTTTGCAGTCTGGATTGAGGACTCCTCAGTGTACACTTCAAGGAACGCTCACGAAACCGCAGGATCCAGCTTTGATCAAGGTGAGTTAGTGGATTAATGTCAATTATTTTCAAATTAAGTTCAATGATTTGTAATCAATTAGTATTAGTATAGATACATATGCATGGTCATTTCAAATTTTGATCGTAATGAATCATCAATTTAGTCCCTTAAATTGTAGGCGTCCAACAATAGACCACATTAGTTTGAATCAAGTGGTTTGGCTTAAGTGGTTAATGAGCTTCTAGTTAAGTTGAATTGATCAGAGTACCTGAGTTTGATTCTTGGCTAGAACAATTTGTGGCCAATTTTTACTCTCCTCAACTCTGGATTACCAGAACCCATTTTCTTGGAATTAATGCGATTGACTCTAAGAGTTAAGACGGGAAAAAAAAATCACATTAGTTCGTCTTGGACAATGCAGAGACTAATTTGACTAACTCAAAAGGACTAATGTGATTGAGGATTCTCAATGTTGGTAACGTTTTAGAATTTCATTCTAAAATTAAGTTCAATTGGACAATGTTGGAGTAATGTGAATTATTTTCAAATTAAGTTCAATGATCTGTAATCAGTTAGTAACAGTGAAGGTACATACCTAAGGTTTTTTCAAACTGTGATTGTAGTGAATCATCAGTTTAGCCGCTGAAATTGTAGGCGTCGAACAATTTGATCTTTTAAATGAACAAAAGGACATGATCCATATAATATATCACATTAGTTTGAAACAAGAAGCTCAACTCAAGTGGTTAATGAGTTTCAGTTAAGGCTGAATCAATCAGAGTACCCGAGTTCGAGCCCTAGCTAGAACAATCTTTGGCCAAACTTTGGACTACCAGAGCCCCTTTCCTCTGGAAACCGGATGGTTGATACAAAAATAACATTGCATTAGTTCGTCCTGGACAATTGTAGAGACTAAATTAACTAATTCAAAAGGGCTAATGTGATTGATGATTTTTAATTTTGGAGTCATTTTAGAATTTTGTTAATTACCGAGAATTTCTAGGGATAAATTGGTCATTTATAATTGCGACTGTGAGTACATTATTATGAAAATTTATTGACAAAAGTGATTGATGTTGACAAAGGTGGTTATGAAGAACTGAAAAACCCTTACCTTGTGACCTTGATTGTAGTTTCATATAGCAATTTATAACCATCTACGCTTGTGTGTTCTGTTTATGTCTAAATTTCTATTGTCACTCCACAGCGGCTTGTTTCTTTGTGGAAGAAGAGGTTTGGAGAAGAAGTTAATCAAGATTTTATGTATATTATTGCTGTAGATAGGGTGCTGCACTTGGATGACTTCCAGGAGGTTAGGGACCTGACCCTTCATTTTTATTAAATTATATTCTAGCCTATACTACTAGTTTGCTGATACTAATTGTAATAGGCTGTTTTGCTTGTTAACCTTGCAAGTTGTTTTGTTATATAAGTTGGCTATGTCCTTGTTTTTCAGGACGGTGTGTGGTTCACCTCTTTAGACTACAAAAATGCTCAACCTGACCCCCTTCGAGAGTTTGCTGAGAATTTAGTCGCTGAAATTAACACCAATAATATGGAAGACATTACTCGCTTTTGTAATGTCTATGTTGATTTGGATTTCCAGGTACTTTTCCTGCATGTATCTACATAGCATGTCATAAATAACAACACTTTGTCCATTTTTATTTATTTGTTATCCTTTGATTTAACTGGTGCACCTGATTTATTTACATAGAATTTAACTGGTGCACCTGATTTATCTACACAGCATTTGATTTATCATTCATGTCCTGCTGTGACTGTATTTATGCAGCATTCTTATAAAAATCACTGGCTGTATGTGACCACTAAATAGAAATCTAACTTCAAAACAATATTGAGGACCGATAAGTTAGTTTTGCTGTGTTAACTTCTAATGTATTTGATTTCCCATTGTAGGTCACAGAAGCAAAGATGATATGGGTAGACCGTTTGGGTTTGGATATGCGTTTGTTTTCTCCTAACAACGGTTTATTTGAGGTCCGCATTCCTTTCCCTAGAGAAGTCACAGATGAAAAAGGTGCCAAGTCAACATTTAACTGTATGTCACAATTGGCTTGGGAGGTAGAAAGAAACTTCCATCCTCTGGATTTTGAGAAGGTTACAGAATTGAAGCACATAAAGTCATGA
Protein sequence

>MS.gene78487.t1

MDLARVGTLSTLTQQGYPLGVGVRFVIDSEDGNPFFYFNHNAIPTTDNNIHTPSSLHVKFLQSGLRTPQCTLQGTLTKPQDPALIKRLVSLWKKRFGEEVNQDFMYIIAVDRVLHLDDFQEDGVWFTSLDYKNAQPDPLREFAENLVAEINTNNMEDITRFCNVYVDLDFQVTEAKMIWVDRLGLDMRLFSPNNGLFEVRIPFPREVTDEKGAKSTFNCMSQLAWEVERNFHPLDFEKVTELKHIKS