Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78528.t1 | XP_003616296.2 | 94.7 | 916 | 20 | 3 | 1 | 889 | 1 | 914 | 0.00E+00 | 1619.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78528.t1 | Q8W489 | 47.2 | 915 | 368 | 20 | 29 | 889 | 12 | 865 | 8.2e-200 | 698.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78528.t1 | G7K1Q6 | 94.7 | 916 | 20 | 3 | 1 | 889 | 1 | 914 | 0.0e+00 | 1619.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene78528 | MS.gene070760 | PPI |
| MS.gene78528 | MS.gene045436 | PPI |
| MS.gene78528 | MS.gene070758 | PPI |
| MS.gene78528 | MS.gene006731 | PPI |
| MS.gene78528 | MS.gene070761 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78528.t1 | MTR_5g078360 | 94.541 | 916 | 21 | 3 | 1 | 889 | 1 | 914 | 0.0 | 1769 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78528.t1 | AT5G16630 | 51.004 | 847 | 314 | 17 | 93 | 889 | 70 | 865 | 0.0 | 713 |
| MS.gene78528.t1 | AT5G16630 | 51.004 | 847 | 314 | 17 | 93 | 889 | 70 | 865 | 0.0 | 713 |
| MS.gene78528.t1 | AT5G16630 | 51.182 | 592 | 223 | 12 | 93 | 662 | 70 | 617 | 5.22e-168 | 503 |
Find 182 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGGAAAATATTAAACTTTA+TGG | 0.039387 | 5.1:-60645702 | MS.gene78528:CDS |
| TCATCCAAAGGGTCCGGTTC+TGG | 0.177286 | 5.1:-60646020 | MS.gene78528:CDS |
| TTGTACTTTCTGAGGCTTAA+TGG | 0.198148 | 5.1:+60645764 | None:intergenic |
| TTTCAGGTTTGTGTCCATTT+TGG | 0.206215 | 5.1:-60648208 | MS.gene78528:intron |
| TTGTGACGATCCTCTTATTC+AGG | 0.270667 | 5.1:-60651273 | MS.gene78528:intron |
| CACAGCACCCTTGGATATTT+CGG | 0.273593 | 5.1:+60651957 | None:intergenic |
| TTCTCGGAGCCATCTCTCTT+TGG | 0.290930 | 5.1:+60645943 | None:intergenic |
| CGAGGGGTACATTGATAAAA+AGG | 0.295945 | 5.1:-60651594 | MS.gene78528:CDS |
| AACCATACCCATGAGATTAA+AGG | 0.310506 | 5.1:+60650879 | None:intergenic |
| CATCCAAAGGGTCCGGTTCT+GGG | 0.310984 | 5.1:-60646019 | MS.gene78528:CDS |
| ACATTCAATTCTATTGTCAT+AGG | 0.319019 | 5.1:+60651518 | None:intergenic |
| CAACCAGATTAGACCTTTGC+AGG | 0.322751 | 5.1:+60645893 | None:intergenic |
| AGGAAAATATTAAACTTTAT+GGG | 0.334938 | 5.1:-60645701 | MS.gene78528:CDS |
| TGTTTCTTTACAGATGAATC+AGG | 0.337872 | 5.1:+60651491 | None:intergenic |
| CACCAGGTACAGTGCACTTA+AGG | 0.338212 | 5.1:-60645108 | MS.gene78528:CDS |
| TGAAAGAGATCTACCTCTTC+AGG | 0.341870 | 5.1:+60650658 | None:intergenic |
| GGTTCTAGTAAGGGGATCTT+TGG | 0.343230 | 5.1:-60648138 | MS.gene78528:CDS |
| GCTGTGAATTTGATTATTGA+TGG | 0.350062 | 5.1:-60647571 | MS.gene78528:CDS |
| ACCTTTGCAGGATGTTCATT+GGG | 0.351208 | 5.1:+60645905 | None:intergenic |
| GTTTCACTTGTAGCCCTTCT+CGG | 0.353277 | 5.1:+60645927 | None:intergenic |
| AAACCTGCGGGTCACATCTT+TGG | 0.357932 | 5.1:+60647471 | None:intergenic |
| AACTTAGAGTCTGGAGCAAC+TGG | 0.361257 | 5.1:-60646326 | MS.gene78528:CDS |
| CGAGCACATCCCGTCTATAA+TGG | 0.361445 | 5.1:-60645004 | MS.gene78528:CDS |
| GAGTTTGAGCCGGTACAAAT+TGG | 0.363020 | 5.1:-60651731 | MS.gene78528:CDS |
| AGTAGGATCTCCTTTGTATT+GGG | 0.364537 | 5.1:-60647647 | MS.gene78528:CDS |
| CATTGTAGTAGAAATTCTAT+TGG | 0.365967 | 5.1:-60651659 | MS.gene78528:CDS |
| TGACTGCACTACTGATTCTA+AGG | 0.366300 | 5.1:-60645721 | MS.gene78528:CDS |
| ACGCACTGCACCAAGCAAAA+TGG | 0.366368 | 5.1:-60647995 | MS.gene78528:CDS |
| AAAGTCACTGCACTTTGCTT+TGG | 0.372378 | 5.1:-60650710 | MS.gene78528:CDS |
| ACACAAGTCCTAGGGTAAAC+AGG | 0.374218 | 5.1:+60645980 | None:intergenic |
| AACCCCAGAACCGGACCCTT+TGG | 0.385660 | 5.1:+60646016 | None:intergenic |
| TTGTCTATCTGATGGTGTCT+AGG | 0.386306 | 5.1:+60644417 | None:intergenic |
| AAGAAAATTTGACAGGAAAG+TGG | 0.387383 | 5.1:-60647606 | MS.gene78528:CDS |
| GACCTTTGCAGGATGTTCAT+TGG | 0.391697 | 5.1:+60645904 | None:intergenic |
| AAGAGATGAAACATCCAAAA+TGG | 0.394134 | 5.1:+60648194 | None:intergenic |
| CTCTATGTCCTTTAATCTCA+TGG | 0.396904 | 5.1:-60650887 | MS.gene78528:CDS |
| TGTCTATCTGATGGTGTCTA+GGG | 0.398884 | 5.1:+60644418 | None:intergenic |
| TTGCTTCTGTAGCACTGATT+TGG | 0.404166 | 5.1:+60646279 | None:intergenic |
| AACTGCTGTAGAAATTAGTT+GGG | 0.405492 | 5.1:+60647681 | None:intergenic |
| CAACTGCTGTAGAAATTAGT+TGG | 0.411925 | 5.1:+60647680 | None:intergenic |
| CTCATAAATTAAAGAGGAAA+GGG | 0.413230 | 5.1:-60647864 | MS.gene78528:CDS |
| CCCACCTTCGGTGTTGTGTT+GGG | 0.418401 | 5.1:+60652100 | None:intergenic |
| GCTCTTTCTGTTACAGCAGT+TGG | 0.420890 | 5.1:-60647811 | MS.gene78528:CDS |
| AATGGCAAGTGGTTCTAGTA+AGG | 0.432799 | 5.1:-60648148 | MS.gene78528:CDS |
| AGCGTGGTCAAGTGGATGTC+TGG | 0.433333 | 5.1:-60645147 | MS.gene78528:CDS |
| AAGTAGGATCTCCTTTGTAT+TGG | 0.433396 | 5.1:-60647648 | MS.gene78528:CDS |
| CAACTAATTTCTACAGCAGT+TGG | 0.443448 | 5.1:-60647679 | MS.gene78528:CDS |
| AATACTATAATTCTTCTACT+TGG | 0.445825 | 5.1:+60644262 | None:intergenic |
| TAATAGTTAACCTGAATAAG+AGG | 0.447865 | 5.1:+60651263 | None:intergenic |
| AAACTATGTGAAAGCTCTCT+TGG | 0.448992 | 5.1:-60648039 | MS.gene78528:CDS |
| AATCTTCCTCACGCGGTGAA+TGG | 0.449667 | 5.1:-60645657 | MS.gene78528:CDS |
| ATATTAAACTTTATGGGAAG+TGG | 0.454726 | 5.1:-60645695 | MS.gene78528:CDS |
| GATGACTCAGATTGGGAAGA+TGG | 0.458697 | 5.1:-60651563 | MS.gene78528:CDS |
| CCTGAACAAAACCCCAGAAC+CGG | 0.463014 | 5.1:+60646007 | None:intergenic |
| ACAGTTTGCACACAAGTCCT+AGG | 0.463689 | 5.1:+60645971 | None:intergenic |
| ATTGGTTTAAAAGATTGATC+TGG | 0.464983 | 5.1:+60648168 | None:intergenic |
| TGTCGTGTGTGCTGAGTTCA+AGG | 0.467678 | 5.1:-60644978 | MS.gene78528:CDS |
| AAGAACTGGATGACTCAGAT+TGG | 0.467692 | 5.1:-60651571 | MS.gene78528:CDS |
| TCCCACCTTCGGTGTTGTGT+TGG | 0.471785 | 5.1:+60652099 | None:intergenic |
| TCCTCAATAGAGCTCCTTGT+AGG | 0.472613 | 5.1:+60646236 | None:intergenic |
| AATGGTATCTAAGCAAAAGT+TGG | 0.473113 | 5.1:-60648103 | MS.gene78528:CDS |
| GCTTTGTGACATTTGATAGC+TGG | 0.476251 | 5.1:+60650922 | None:intergenic |
| ATTTGAGATGCAGATGGAAA+TGG | 0.481223 | 5.1:-60647833 | MS.gene78528:CDS |
| AATTCAAAACCAACCATAGC+AGG | 0.481589 | 5.1:+60645037 | None:intergenic |
| GGGATACTTACTGAAACGTC+TGG | 0.485432 | 5.1:+60644381 | None:intergenic |
| AACCTTAAGTGCACTGTACC+TGG | 0.487431 | 5.1:+60645106 | None:intergenic |
| CAGGTCACCCTGTTTACCCT+AGG | 0.488850 | 5.1:-60645988 | MS.gene78528:CDS |
| TGCAGTGAAGAAAATTTGAC+AGG | 0.493635 | 5.1:-60647613 | MS.gene78528:CDS |
| CGAAATATCCAAGGGTGCTG+TGG | 0.498356 | 5.1:-60651956 | MS.gene78528:CDS |
| ACCGCGTGAGGAAGATTCAA+TGG | 0.500697 | 5.1:+60645663 | None:intergenic |
| AAAGCTCTCTTGGTCATTCA+CGG | 0.501384 | 5.1:-60648029 | MS.gene78528:CDS |
| TTCTAAGAGTAAAGTGGGGT+CGG | 0.504591 | 5.1:-60647785 | MS.gene78528:CDS |
| CTCGTGGAAGATTAATAGAC+AGG | 0.507266 | 5.1:-60651298 | MS.gene78528:CDS |
| CCACTGAGAAACTTAGAGTC+TGG | 0.508190 | 5.1:-60646335 | MS.gene78528:CDS |
| TAGTAGAAATTCTATTGGAA+AGG | 0.508427 | 5.1:-60651654 | MS.gene78528:CDS |
| GATTCTGCACCTGCTATGGT+TGG | 0.511076 | 5.1:-60645046 | MS.gene78528:CDS |
| TTACTAGAACCACTTGCCAT+TGG | 0.512175 | 5.1:+60648150 | None:intergenic |
| TCAAAATCTTGTACTTTCTG+AGG | 0.514663 | 5.1:+60645756 | None:intergenic |
| ACCTGCTGGTTGGTTGGAAG+AGG | 0.515197 | 5.1:+60646182 | None:intergenic |
| AGAACTGGATGACTCAGATT+GGG | 0.516004 | 5.1:-60651570 | MS.gene78528:CDS |
| ATCCAAAGGGTCCGGTTCTG+GGG | 0.516010 | 5.1:-60646018 | MS.gene78528:CDS |
| GATTGATTCTGCACCTGCTA+TGG | 0.516302 | 5.1:-60645050 | MS.gene78528:CDS |
| TGTCAGTTATATGTGATTCG+AGG | 0.516683 | 5.1:+60647890 | None:intergenic |
| AGAGTACGAGAGCTTTGATA+AGG | 0.516887 | 5.1:-60644328 | MS.gene78528:CDS |
| TCCTACAAGGAGCTCTATTG+AGG | 0.517013 | 5.1:-60646237 | MS.gene78528:CDS |
| GAGCTTTAAATCTTACAGCC+AGG | 0.517661 | 5.1:-60648590 | MS.gene78528:intron |
| GCCTCTTCCAACCAACCAGC+AGG | 0.519338 | 5.1:-60646183 | MS.gene78528:intron |
| ACAAATCTCATAAATTAAAG+AGG | 0.519546 | 5.1:-60647870 | MS.gene78528:CDS |
| CATCTATTGTAACTCGTCAA+AGG | 0.520989 | 5.1:-60644554 | MS.gene78528:CDS |
| TCTCATAAATTAAAGAGGAA+AGG | 0.526651 | 5.1:-60647865 | MS.gene78528:CDS |
| TTGCTTTGTTTACTTGCTCG+TGG | 0.528460 | 5.1:-60651314 | MS.gene78528:CDS |
| GTTTCTTTACAGATGAATCA+GGG | 0.530323 | 5.1:+60651492 | None:intergenic |
| CACGACAATGCCATTATAGA+CGG | 0.532418 | 5.1:+60644994 | None:intergenic |
| AGAATCAATCTCTAGCCTCT+TGG | 0.533815 | 5.1:+60645063 | None:intergenic |
| GGATGTTCTAAGAGTAAAGT+GGG | 0.533972 | 5.1:-60647790 | MS.gene78528:CDS |
| ACACATTATCATTCACGCAA+TGG | 0.538138 | 5.1:+60644481 | None:intergenic |
| TATCAAATACTTCATCCAAA+GGG | 0.539111 | 5.1:-60646031 | MS.gene78528:CDS |
| CATTATAGACGGGATGTGCT+CGG | 0.541200 | 5.1:+60645005 | None:intergenic |
| AATACTTCATCCAAAGGGTC+CGG | 0.542313 | 5.1:-60646026 | MS.gene78528:CDS |
| GCAGTTGGATCTATGAAAGT+AGG | 0.545778 | 5.1:-60647664 | MS.gene78528:CDS |
| ATGGCAAGTGGTTCTAGTAA+GGG | 0.546560 | 5.1:-60648147 | MS.gene78528:CDS |
| GATAGCTGGAGCAAGTGCGC+TGG | 0.548698 | 5.1:+60650936 | None:intergenic |
| ATGACTCAGATTGGGAAGAT+GGG | 0.549098 | 5.1:-60651562 | MS.gene78528:CDS |
| TGGACATCATTTGACACCTC+AGG | 0.549556 | 5.1:+60644501 | None:intergenic |
| TCTAAGAGTAAAGTGGGGTC+GGG | 0.549637 | 5.1:-60647784 | MS.gene78528:CDS |
| ACTTGAGTTCCAATTTGTAC+CGG | 0.551166 | 5.1:+60651722 | None:intergenic |
| CTTTGGTACTTCAACACCAA+TGG | 0.553064 | 5.1:-60648121 | MS.gene78528:CDS |
| GTCTATCTGATGGTGTCTAG+GGG | 0.554794 | 5.1:+60644419 | None:intergenic |
| GAAATATCCAAGGGTGCTGT+GGG | 0.555051 | 5.1:-60651955 | MS.gene78528:CDS |
| TATTGAATTTGAGATGCAGA+TGG | 0.557624 | 5.1:-60647839 | MS.gene78528:CDS |
| AAGAGAGATGGCTCCGAGAA+GGG | 0.560448 | 5.1:-60645940 | MS.gene78528:CDS |
| TATCACATTTGTCTATCTGA+TGG | 0.561658 | 5.1:+60644409 | None:intergenic |
| AAAGAGAGATGGCTCCGAGA+AGG | 0.562954 | 5.1:-60645941 | MS.gene78528:CDS |
| GTCTGGAGCAACTGGAGGTG+TGG | 0.564744 | 5.1:-60646318 | MS.gene78528:CDS |
| GAAACTACCTGCTGGTTGGT+TGG | 0.565218 | 5.1:+60646176 | None:intergenic |
| TCTATGTCCTTTAATCTCAT+GGG | 0.565273 | 5.1:-60650886 | MS.gene78528:intron |
| TTTCTATGACATAAAGTGAG+TGG | 0.568693 | 5.1:+60646068 | None:intergenic |
| CTAGAACGAGCGTGGTCAAG+TGG | 0.569265 | 5.1:-60645155 | MS.gene78528:intron |
| GTTGTAGGTTGAGTTTGAGC+CGG | 0.569887 | 5.1:-60651741 | MS.gene78528:intron |
| AGGACGTTGAGTTAGAAACT+AGG | 0.570154 | 5.1:-60646217 | MS.gene78528:CDS |
| GTATCAAATACTTCATCCAA+AGG | 0.571178 | 5.1:-60646032 | MS.gene78528:CDS |
| AGAAAATTTGACAGGAAAGT+GGG | 0.572265 | 5.1:-60647605 | MS.gene78528:CDS |
| CAACGGAAGAAGAGACCCTC+AGG | 0.572902 | 5.1:-60652991 | MS.gene78528:intron |
| CCGAGCTTCTGCTGAAGACA+AGG | 0.574518 | 5.1:-60651462 | MS.gene78528:intron |
| GGACGTTGAGTTAGAAACTA+GGG | 0.577631 | 5.1:-60646216 | MS.gene78528:CDS |
| ATCGTTGACCGAAATATCCA+AGG | 0.579259 | 5.1:-60651965 | MS.gene78528:CDS |
| CCTTGTCTTCAGCAGAAGCT+CGG | 0.581493 | 5.1:+60651462 | None:intergenic |
| GCATCGCTTTGTCAACAAAG+AGG | 0.581852 | 5.1:+60644302 | None:intergenic |
| TGCGAAGCGCTTCCTCTGCG+TGG | 0.586768 | 5.1:+60653012 | None:intergenic |
| TGGATGTTCTAAGAGTAAAG+TGG | 0.587047 | 5.1:-60647791 | MS.gene78528:CDS |
| TGGCAAGTGGTTCTAGTAAG+GGG | 0.588101 | 5.1:-60648146 | MS.gene78528:CDS |
| AGAAGACAAGGTTGAAGCCA+TGG | 0.588806 | 5.1:-60647548 | MS.gene78528:CDS |
| GCGAGTTAATTCAACATGGT+GGG | 0.589568 | 5.1:-60646372 | MS.gene78528:CDS |
| CACAAGTCCTAGGGTAAACA+GGG | 0.591721 | 5.1:+60645981 | None:intergenic |
| GGGCCAAAGATGTGACCCGC+AGG | 0.594785 | 5.1:-60647474 | MS.gene78528:intron |
| GCAGAGGAAGCGCTTCGCAA+CGG | 0.598324 | 5.1:-60653008 | MS.gene78528:CDS |
| TCAGCTTGCAGCTTTGTCGG+TGG | 0.599122 | 5.1:-60648622 | MS.gene78528:intron |
| ACTATTCCATTCACCGCGTG+AGG | 0.599144 | 5.1:+60645651 | None:intergenic |
| GGTGAATGGAATAGTTCCTA+AGG | 0.602073 | 5.1:-60645643 | MS.gene78528:intron |
| TATACTTCTGCCCAATACAA+AGG | 0.602473 | 5.1:+60647637 | None:intergenic |
| GATTATTGATGGAGAAGACA+AGG | 0.603317 | 5.1:-60647560 | MS.gene78528:CDS |
| ACGACAATGCCATTATAGAC+GGG | 0.604768 | 5.1:+60644995 | None:intergenic |
| ATTGGCTGAACTTGTGCACA+AGG | 0.608031 | 5.1:-60651342 | MS.gene78528:CDS |
| CTGTTATGACCAAAGAGAGA+TGG | 0.614412 | 5.1:-60645952 | MS.gene78528:CDS |
| AGACGTTTCAGTAAGTATCC+CGG | 0.615246 | 5.1:-60644379 | MS.gene78528:CDS |
| GTCACTACTACCACATATTG+TGG | 0.615626 | 5.1:+60644452 | None:intergenic |
| ACCCAATGAACATCCTGCAA+AGG | 0.617404 | 5.1:-60645906 | MS.gene78528:intron |
| GACAAACTCACAAACTTCTG+AGG | 0.619706 | 5.1:-60647926 | MS.gene78528:CDS |
| GTGTCAAATGCCACAATATG+TGG | 0.621219 | 5.1:-60644462 | MS.gene78528:CDS |
| CAGTTTGCACACAAGTCCTA+GGG | 0.621494 | 5.1:+60645972 | None:intergenic |
| TGCTGTAGAAATTAGTTGGG+GGG | 0.625544 | 5.1:+60647684 | None:intergenic |
| ACGTGAGGGTAGTCCTGAAG+AGG | 0.626615 | 5.1:-60650671 | MS.gene78528:intron |
| AGCGAGTTAATTCAACATGG+TGG | 0.628936 | 5.1:-60646373 | MS.gene78528:CDS |
| TTTCTTTACAGATGAATCAG+GGG | 0.633697 | 5.1:+60651493 | None:intergenic |
| CTGCTACGTCGTGCTAACAA+AGG | 0.633701 | 5.1:-60651928 | MS.gene78528:CDS |
| ATATTAGGTACTGTATGAAG+TGG | 0.639077 | 5.1:-60646412 | MS.gene78528:intron |
| ACTGCTGTAGAAATTAGTTG+GGG | 0.640359 | 5.1:+60647682 | None:intergenic |
| TCATAAATTAAAGAGGAAAG+GGG | 0.644539 | 5.1:-60647863 | MS.gene78528:CDS |
| TAATAACAGTTTGACACCTG+AGG | 0.645772 | 5.1:-60644517 | MS.gene78528:CDS |
| AGAAGAAGAATGCCACGCAG+AGG | 0.646227 | 5.1:-60653024 | None:intergenic |
| TCTGAGAAATGTCTTCCACC+AGG | 0.648250 | 5.1:-60645124 | MS.gene78528:CDS |
| GGAAGATGGGACAGTTGCCG+TGG | 0.650172 | 5.1:-60651549 | MS.gene78528:CDS |
| TTAGAGTCTGGAGCAACTGG+AGG | 0.651590 | 5.1:-60646323 | MS.gene78528:CDS |
| ACCATTGAATCTTCCTCACG+CGG | 0.653369 | 5.1:-60645664 | MS.gene78528:CDS |
| TGTCATAGGATGATCATCCA+CGG | 0.653704 | 5.1:+60651532 | None:intergenic |
| ATCAGCTATAGAATTACGTG+AGG | 0.656397 | 5.1:-60650686 | MS.gene78528:CDS |
| AAATCCCAACACAACACCGA+AGG | 0.656594 | 5.1:-60652104 | MS.gene78528:intron |
| CACAGCGAGTTAATTCAACA+TGG | 0.657556 | 5.1:-60646376 | MS.gene78528:CDS |
| GGTCATGTATGTATAGACGA+GGG | 0.658606 | 5.1:-60651611 | MS.gene78528:CDS |
| TCGTTGACCGAAATATCCAA+GGG | 0.665933 | 5.1:-60651964 | MS.gene78528:CDS |
| TGGTCATGTATGTATAGACG+AGG | 0.668593 | 5.1:-60651612 | MS.gene78528:CDS |
| CTACGTCGTGCTAACAAAGG+TGG | 0.670161 | 5.1:-60651925 | MS.gene78528:CDS |
| GTCATGTATGTATAGACGAG+GGG | 0.670172 | 5.1:-60651610 | MS.gene78528:CDS |
| GCGCATATTCTGTTGCCAAG+AGG | 0.670329 | 5.1:-60645078 | MS.gene78528:CDS |
| GTTCAAGGACATACTGCTAG+AGG | 0.671109 | 5.1:-60644963 | MS.gene78528:intron |
| CTGCTGTAGAAATTAGTTGG+GGG | 0.681676 | 5.1:+60647683 | None:intergenic |
| GATTCTGCAGATGAGAAATG+TGG | 0.684607 | 5.1:-60651632 | MS.gene78528:CDS |
| CCAGACTCTAAGTTTCTCAG+TGG | 0.685977 | 5.1:+60646335 | None:intergenic |
| CTTAAGTGCACTGTACCTGG+TGG | 0.700022 | 5.1:+60645109 | None:intergenic |
| TTGACAAAGCGATGCCAATG+TGG | 0.715315 | 5.1:-60644294 | MS.gene78528:CDS |
| TCAGCTATAGAATTACGTGA+GGG | 0.719030 | 5.1:-60650685 | MS.gene78528:CDS |
| GATGTTCTAAGAGTAAAGTG+GGG | 0.775780 | 5.1:-60647789 | MS.gene78528:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 60644266 | 60653037 | 60644266 | ID=MS.gene78528 |
| chr5.1 | mRNA | 60644266 | 60653037 | 60644266 | ID=MS.gene78528.t1;Parent=MS.gene78528 |
| chr5.1 | exon | 60652992 | 60653037 | 60652992 | ID=MS.gene78528.t1.exon1;Parent=MS.gene78528.t1 |
| chr5.1 | CDS | 60652992 | 60653037 | 60652992 | ID=cds.MS.gene78528.t1;Parent=MS.gene78528.t1 |
| chr5.1 | exon | 60652105 | 60652137 | 60652105 | ID=MS.gene78528.t1.exon2;Parent=MS.gene78528.t1 |
| chr5.1 | CDS | 60652105 | 60652137 | 60652105 | ID=cds.MS.gene78528.t1;Parent=MS.gene78528.t1 |
| chr5.1 | exon | 60651903 | 60651988 | 60651903 | ID=MS.gene78528.t1.exon3;Parent=MS.gene78528.t1 |
| chr5.1 | CDS | 60651903 | 60651988 | 60651903 | ID=cds.MS.gene78528.t1;Parent=MS.gene78528.t1 |
| chr5.1 | exon | 60651463 | 60651756 | 60651463 | ID=MS.gene78528.t1.exon4;Parent=MS.gene78528.t1 |
| chr5.1 | CDS | 60651463 | 60651756 | 60651463 | ID=cds.MS.gene78528.t1;Parent=MS.gene78528.t1 |
| chr5.1 | exon | 60651274 | 60651366 | 60651274 | ID=MS.gene78528.t1.exon5;Parent=MS.gene78528.t1 |
| chr5.1 | CDS | 60651274 | 60651366 | 60651274 | ID=cds.MS.gene78528.t1;Parent=MS.gene78528.t1 |
| chr5.1 | exon | 60650887 | 60650979 | 60650887 | ID=MS.gene78528.t1.exon6;Parent=MS.gene78528.t1 |
| chr5.1 | CDS | 60650887 | 60650979 | 60650887 | ID=cds.MS.gene78528.t1;Parent=MS.gene78528.t1 |
| chr5.1 | exon | 60650672 | 60650773 | 60650672 | ID=MS.gene78528.t1.exon7;Parent=MS.gene78528.t1 |
| chr5.1 | CDS | 60650672 | 60650773 | 60650672 | ID=cds.MS.gene78528.t1;Parent=MS.gene78528.t1 |
| chr5.1 | exon | 60648591 | 60648640 | 60648591 | ID=MS.gene78528.t1.exon8;Parent=MS.gene78528.t1 |
| chr5.1 | CDS | 60648591 | 60648640 | 60648591 | ID=cds.MS.gene78528.t1;Parent=MS.gene78528.t1 |
| chr5.1 | exon | 60647475 | 60648224 | 60647475 | ID=MS.gene78528.t1.exon9;Parent=MS.gene78528.t1 |
| chr5.1 | CDS | 60647475 | 60648224 | 60647475 | ID=cds.MS.gene78528.t1;Parent=MS.gene78528.t1 |
| chr5.1 | exon | 60646184 | 60646427 | 60646184 | ID=MS.gene78528.t1.exon10;Parent=MS.gene78528.t1 |
| chr5.1 | CDS | 60646184 | 60646427 | 60646184 | ID=cds.MS.gene78528.t1;Parent=MS.gene78528.t1 |
| chr5.1 | exon | 60645907 | 60646101 | 60645907 | ID=MS.gene78528.t1.exon11;Parent=MS.gene78528.t1 |
| chr5.1 | CDS | 60645907 | 60646101 | 60645907 | ID=cds.MS.gene78528.t1;Parent=MS.gene78528.t1 |
| chr5.1 | exon | 60645644 | 60645799 | 60645644 | ID=MS.gene78528.t1.exon12;Parent=MS.gene78528.t1 |
| chr5.1 | CDS | 60645644 | 60645799 | 60645644 | ID=cds.MS.gene78528.t1;Parent=MS.gene78528.t1 |
| chr5.1 | exon | 60644964 | 60645173 | 60644964 | ID=MS.gene78528.t1.exon13;Parent=MS.gene78528.t1 |
| chr5.1 | CDS | 60644964 | 60645173 | 60644964 | ID=cds.MS.gene78528.t1;Parent=MS.gene78528.t1 |
| chr5.1 | exon | 60644266 | 60644583 | 60644266 | ID=MS.gene78528.t1.exon14;Parent=MS.gene78528.t1 |
| chr5.1 | CDS | 60644266 | 60644583 | 60644266 | ID=cds.MS.gene78528.t1;Parent=MS.gene78528.t1 |
| Gene Sequence |
| Protein sequence |
