Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78666.t1 | XP_013462174.1 | 97.2 | 676 | 19 | 0 | 1 | 676 | 58 | 733 | 0.00E+00 | 1402.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78666.t1 | Q9MAJ7 | 73.5 | 672 | 177 | 1 | 1 | 671 | 61 | 732 | 0.0e+00 | 1075.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78666.t1 | A0A072V2E3 | 97.2 | 676 | 19 | 0 | 1 | 676 | 58 | 733 | 0.0e+00 | 1402.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene78666 | MS.gene64717 | PPI |
| MS.gene78666 | MS.gene59424 | PPI |
| MS.gene78666 | MS.gene010574 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78666.t1 | MTR_3g112370 | 97.189 | 676 | 19 | 0 | 1 | 676 | 58 | 733 | 0.0 | 1378 |
| MS.gene78666.t1 | MTR_1g023120 | 81.129 | 673 | 125 | 2 | 1 | 672 | 59 | 730 | 0.0 | 1159 |
| MS.gene78666.t1 | MTR_1g023120 | 81.129 | 673 | 125 | 2 | 1 | 672 | 1 | 672 | 0.0 | 1156 |
| MS.gene78666.t1 | MTR_5g021190 | 72.337 | 676 | 185 | 2 | 1 | 675 | 56 | 730 | 0.0 | 1045 |
| MS.gene78666.t1 | MTR_8g016230 | 64.065 | 679 | 237 | 5 | 1 | 675 | 55 | 730 | 0.0 | 916 |
| MS.gene78666.t1 | MTR_2g100110 | 64.065 | 679 | 237 | 5 | 1 | 675 | 58 | 733 | 0.0 | 911 |
| MS.gene78666.t1 | MTR_1g018200 | 63.040 | 671 | 245 | 3 | 1 | 669 | 61 | 730 | 0.0 | 900 |
| MS.gene78666.t1 | MTR_2g039120 | 62.537 | 670 | 249 | 2 | 1 | 669 | 58 | 726 | 0.0 | 892 |
| MS.gene78666.t1 | MTR_2g039120 | 62.264 | 636 | 238 | 2 | 1 | 635 | 58 | 692 | 0.0 | 844 |
| MS.gene78666.t1 | MTR_2g094020 | 53.161 | 696 | 288 | 9 | 1 | 675 | 52 | 730 | 0.0 | 758 |
| MS.gene78666.t1 | MTR_2g100110 | 65.789 | 532 | 179 | 2 | 1 | 530 | 58 | 588 | 0.0 | 753 |
| MS.gene78666.t1 | MTR_2g094060 | 53.198 | 688 | 296 | 8 | 1 | 675 | 52 | 726 | 0.0 | 748 |
| MS.gene78666.t1 | MTR_2g094060 | 53.198 | 688 | 296 | 8 | 1 | 675 | 52 | 726 | 0.0 | 748 |
| MS.gene78666.t1 | MTR_2g039120 | 61.796 | 568 | 216 | 1 | 1 | 568 | 58 | 624 | 0.0 | 743 |
| MS.gene78666.t1 | MTR_4g059680 | 52.662 | 695 | 291 | 9 | 1 | 675 | 56 | 732 | 0.0 | 735 |
| MS.gene78666.t1 | MTR_3g096900 | 51.694 | 679 | 313 | 6 | 1 | 667 | 57 | 732 | 0.0 | 716 |
| MS.gene78666.t1 | MTR_2g039120 | 63.396 | 530 | 194 | 0 | 1 | 530 | 58 | 587 | 0.0 | 714 |
| MS.gene78666.t1 | MTR_2g094060 | 53.715 | 646 | 273 | 8 | 1 | 633 | 52 | 684 | 0.0 | 706 |
| MS.gene78666.t1 | MTR_8g085210 | 49.930 | 715 | 310 | 11 | 1 | 676 | 80 | 785 | 0.0 | 688 |
| MS.gene78666.t1 | MTR_3g096900 | 51.159 | 647 | 301 | 6 | 1 | 635 | 57 | 700 | 0.0 | 670 |
| MS.gene78666.t1 | MTR_2g042610 | 47.238 | 688 | 347 | 7 | 1 | 675 | 57 | 741 | 0.0 | 646 |
| MS.gene78666.t1 | MTR_5g025830 | 46.087 | 690 | 345 | 11 | 1 | 675 | 58 | 735 | 0.0 | 619 |
| MS.gene78666.t1 | MTR_3g088520 | 49.552 | 670 | 295 | 12 | 1 | 665 | 1 | 632 | 0.0 | 619 |
| MS.gene78666.t1 | MTR_3g096910 | 48.143 | 673 | 310 | 9 | 1 | 665 | 57 | 698 | 0.0 | 618 |
| MS.gene78666.t1 | MTR_3g088520 | 49.552 | 670 | 295 | 12 | 1 | 665 | 56 | 687 | 0.0 | 617 |
| MS.gene78666.t1 | MTR_5g024080 | 46.647 | 686 | 350 | 9 | 1 | 675 | 40 | 720 | 0.0 | 617 |
| MS.gene78666.t1 | MTR_3g117840 | 46.244 | 679 | 314 | 15 | 2 | 666 | 66 | 707 | 0.0 | 612 |
| MS.gene78666.t1 | MTR_4g073290 | 45.617 | 673 | 332 | 10 | 1 | 666 | 58 | 703 | 0.0 | 600 |
| MS.gene78666.t1 | MTR_3g096900 | 51.309 | 573 | 268 | 4 | 1 | 565 | 57 | 626 | 0.0 | 589 |
| MS.gene78666.t1 | MTR_3g005570 | 45.827 | 659 | 331 | 11 | 1 | 643 | 56 | 704 | 0.0 | 584 |
| MS.gene78666.t1 | MTR_3g096910 | 45.423 | 579 | 277 | 9 | 95 | 665 | 1 | 548 | 1.82e-166 | 489 |
| MS.gene78666.t1 | MTR_4g126330 | 40.488 | 410 | 144 | 9 | 228 | 635 | 133 | 444 | 1.33e-84 | 274 |
| MS.gene78666.t1 | MTR_4g126330 | 77.174 | 92 | 21 | 0 | 26 | 117 | 25 | 116 | 3.13e-42 | 159 |
| MS.gene78666.t1 | MTR_5g022590 | 41.558 | 308 | 131 | 8 | 1 | 301 | 22 | 287 | 9.06e-67 | 225 |
| MS.gene78666.t1 | MTR_3g005610 | 33.333 | 285 | 156 | 7 | 377 | 657 | 26 | 280 | 1.05e-35 | 137 |
| MS.gene78666.t1 | MTR_2g059440 | 33.218 | 289 | 150 | 10 | 377 | 657 | 26 | 279 | 2.53e-32 | 127 |
| MS.gene78666.t1 | MTR_2g100000 | 33.626 | 342 | 175 | 11 | 2 | 308 | 85 | 409 | 1.52e-31 | 131 |
| MS.gene78666.t1 | MTR_2g059430 | 30.534 | 262 | 120 | 7 | 396 | 657 | 12 | 211 | 3.60e-23 | 99.4 |
| MS.gene78666.t1 | MTR_2g100000 | 32.056 | 287 | 143 | 11 | 57 | 308 | 2 | 271 | 6.56e-18 | 88.2 |
| MS.gene78666.t1 | MTR_8g076800 | 57.407 | 54 | 23 | 0 | 89 | 142 | 6 | 59 | 3.71e-12 | 67.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78666.t1 | AT1G45130 | 73.512 | 672 | 177 | 1 | 1 | 671 | 61 | 732 | 0.0 | 1056 |
| MS.gene78666.t1 | AT4G36360 | 70.901 | 677 | 196 | 1 | 1 | 676 | 63 | 739 | 0.0 | 1050 |
| MS.gene78666.t1 | AT4G36360 | 70.901 | 677 | 196 | 1 | 1 | 676 | 63 | 739 | 0.0 | 1050 |
| MS.gene78666.t1 | AT1G45130 | 72.699 | 641 | 174 | 1 | 32 | 671 | 13 | 653 | 0.0 | 996 |
| MS.gene78666.t1 | AT3G13750 | 65.243 | 679 | 229 | 5 | 1 | 675 | 64 | 739 | 0.0 | 929 |
| MS.gene78666.t1 | AT4G26140 | 61.458 | 672 | 252 | 6 | 1 | 669 | 59 | 726 | 0.0 | 883 |
| MS.gene78666.t1 | AT3G52840 | 61.791 | 670 | 252 | 4 | 1 | 669 | 113 | 779 | 0.0 | 881 |
| MS.gene78666.t1 | AT3G52840 | 61.791 | 670 | 252 | 4 | 1 | 669 | 59 | 725 | 0.0 | 879 |
| MS.gene78666.t1 | AT4G26140 | 59.254 | 697 | 252 | 7 | 1 | 669 | 59 | 751 | 0.0 | 869 |
| MS.gene78666.t1 | AT5G56870 | 61.194 | 670 | 255 | 5 | 1 | 669 | 59 | 724 | 0.0 | 857 |
| MS.gene78666.t1 | AT4G26140 | 58.371 | 663 | 244 | 7 | 1 | 635 | 59 | 717 | 0.0 | 816 |
| MS.gene78666.t1 | AT2G28470 | 54.399 | 682 | 289 | 7 | 1 | 668 | 62 | 735 | 0.0 | 768 |
| MS.gene78666.t1 | AT2G28470 | 54.399 | 682 | 289 | 7 | 1 | 668 | 62 | 735 | 0.0 | 768 |
| MS.gene78666.t1 | AT2G28470 | 54.399 | 682 | 289 | 7 | 1 | 668 | 56 | 729 | 0.0 | 768 |
| MS.gene78666.t1 | AT2G28470 | 54.399 | 682 | 289 | 7 | 1 | 668 | 56 | 729 | 0.0 | 768 |
| MS.gene78666.t1 | AT4G26140 | 60.739 | 568 | 219 | 4 | 1 | 568 | 59 | 622 | 0.0 | 739 |
| MS.gene78666.t1 | AT4G26140 | 60.739 | 568 | 219 | 4 | 1 | 568 | 59 | 622 | 0.0 | 739 |
| MS.gene78666.t1 | AT4G26140 | 60.702 | 570 | 218 | 5 | 1 | 568 | 59 | 624 | 0.0 | 739 |
| MS.gene78666.t1 | AT2G28470 | 54.250 | 647 | 274 | 7 | 1 | 633 | 62 | 700 | 0.0 | 721 |
| MS.gene78666.t1 | AT5G63810 | 50.882 | 680 | 321 | 5 | 1 | 670 | 62 | 738 | 0.0 | 714 |
| MS.gene78666.t1 | AT2G32810 | 51.511 | 695 | 300 | 11 | 1 | 665 | 68 | 755 | 0.0 | 701 |
| MS.gene78666.t1 | AT2G32810 | 51.511 | 695 | 300 | 11 | 1 | 665 | 68 | 755 | 0.0 | 700 |
| MS.gene78666.t1 | AT4G26140 | 62.955 | 494 | 178 | 4 | 1 | 492 | 59 | 549 | 0.0 | 671 |
| MS.gene78666.t1 | AT5G20710 | 48.035 | 687 | 341 | 9 | 1 | 676 | 58 | 739 | 0.0 | 659 |
| MS.gene78666.t1 | AT4G26140 | 59.923 | 519 | 178 | 5 | 1 | 492 | 59 | 574 | 0.0 | 656 |
| MS.gene78666.t1 | AT4G26140 | 59.923 | 519 | 178 | 5 | 1 | 492 | 59 | 574 | 0.0 | 656 |
| MS.gene78666.t1 | AT5G63800 | 48.358 | 670 | 312 | 9 | 1 | 665 | 62 | 702 | 0.0 | 624 |
| MS.gene78666.t1 | AT1G77410 | 48.440 | 673 | 304 | 12 | 1 | 665 | 55 | 692 | 0.0 | 612 |
| MS.gene78666.t1 | AT1G31740 | 46.349 | 671 | 304 | 9 | 1 | 660 | 52 | 677 | 0.0 | 608 |
| MS.gene78666.t1 | AT1G77410 | 48.083 | 678 | 304 | 13 | 1 | 665 | 55 | 697 | 0.0 | 607 |
| MS.gene78666.t1 | AT2G16730 | 45.015 | 662 | 330 | 10 | 1 | 655 | 74 | 708 | 0.0 | 588 |
| MS.gene78666.t1 | AT4G35010 | 44.344 | 663 | 333 | 11 | 1 | 655 | 71 | 705 | 0.0 | 576 |
| MS.gene78666.t1 | AT4G38590 | 44.228 | 667 | 335 | 11 | 1 | 658 | 1 | 639 | 0.0 | 567 |
| MS.gene78666.t1 | AT4G38590 | 43.628 | 667 | 335 | 12 | 1 | 658 | 69 | 703 | 0.0 | 552 |
| MS.gene78666.t1 | AT1G77410 | 47.264 | 603 | 275 | 12 | 71 | 665 | 19 | 586 | 1.26e-176 | 520 |
| MS.gene78666.t1 | AT1G77410 | 47.264 | 603 | 275 | 12 | 71 | 665 | 19 | 586 | 1.26e-176 | 520 |
| MS.gene78666.t1 | AT5G20710 | 43.599 | 539 | 288 | 9 | 149 | 676 | 1 | 534 | 2.72e-153 | 457 |
| MS.gene78666.t1 | AT2G04060 | 33.515 | 367 | 170 | 7 | 236 | 602 | 23 | 315 | 2.53e-51 | 185 |
| MS.gene78666.t1 | AT1G72990 | 33.333 | 333 | 183 | 10 | 2 | 304 | 32 | 355 | 3.49e-39 | 154 |
| MS.gene78666.t1 | AT1G72990 | 33.333 | 333 | 183 | 10 | 2 | 304 | 39 | 362 | 5.06e-39 | 153 |
| MS.gene78666.t1 | AT1G72990 | 33.333 | 333 | 183 | 10 | 2 | 304 | 94 | 417 | 6.08e-39 | 154 |
| MS.gene78666.t1 | AT1G72990 | 33.333 | 333 | 183 | 10 | 2 | 304 | 94 | 417 | 6.08e-39 | 154 |
| MS.gene78666.t1 | AT2G04062 | 39.161 | 143 | 66 | 2 | 1 | 143 | 37 | 158 | 1.00e-24 | 101 |
Find 198 sgRNAs with CRISPR-Local
Find 363 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCATAAGGTTTACAGATTT+TGG | 0.145312 | 8.4:+56642731 | MS.gene78666:intron |
| TCCTTCAAATGACTATATTT+TGG | 0.162196 | 8.4:-56643369 | None:intergenic |
| CCTAAACTGGGCTGCAAATA+TGG | 0.190750 | 8.4:+56642295 | MS.gene78666:CDS |
| TGCAATTCCTGCAACTATTC+TGG | 0.212314 | 8.4:+56645502 | MS.gene78666:CDS |
| CAGAGAAGTTGCACATTTAA+TGG | 0.237000 | 8.4:+56644737 | MS.gene78666:CDS |
| TTATAGACACTTATGTCTTC+TGG | 0.248647 | 8.4:+56641331 | MS.gene78666:CDS |
| GGCTTTGGACCTAGGAAGTA+TGG | 0.252554 | 8.4:+56645411 | MS.gene78666:CDS |
| TTCTAGATTGAGAACGAATA+TGG | 0.253847 | 8.4:+56642233 | MS.gene78666:intron |
| CTGGTCATGCATACCTAAAC+TGG | 0.257224 | 8.4:+56642282 | MS.gene78666:CDS |
| GTTGAACAGGTTGGACTAAA+AGG | 0.259985 | 8.4:+56645174 | MS.gene78666:intron |
| GTTCTTCAAACACTACTATT+AGG | 0.264193 | 8.4:-56646171 | None:intergenic |
| AAAAGGAGAGGCTGTGAATT+TGG | 0.279573 | 8.4:+56645191 | MS.gene78666:CDS |
| ATCCGTTCTGAAGCTTATTC+CGG | 0.289249 | 8.4:-56641708 | None:intergenic |
| TGAACTGGTCGCTGGTGAAT+TGG | 0.296094 | 8.4:-56642758 | None:intergenic |
| CATACCTGAGAGAGAATTAT+TGG | 0.300613 | 8.4:-56641918 | None:intergenic |
| CCATATTTGCAGCCCAGTTT+AGG | 0.306276 | 8.4:-56642295 | None:intergenic |
| CTAGGCTTATATGGTTTATT+CGG | 0.307971 | 8.4:-56642592 | None:intergenic |
| GAATCCTTGGAAAATTTCTT+TGG | 0.309226 | 8.4:+56646201 | MS.gene78666:CDS |
| AAATGAGTCCTGTCGATTCT+AGG | 0.326359 | 8.4:+56644066 | MS.gene78666:CDS |
| GCTCCAGCATGTAGATTAAC+TGG | 0.327345 | 8.4:-56644761 | None:intergenic |
| CAACCAAGTTGGCACTTTGC+AGG | 0.328605 | 8.4:-56645535 | None:intergenic |
| TTCTTACCATATTCATCAAT+TGG | 0.333167 | 8.4:-56643069 | None:intergenic |
| GTCCACATGCTAGGCTTATA+TGG | 0.334733 | 8.4:-56642601 | None:intergenic |
| GCATAATAAATGGTCTTATC+AGG | 0.334788 | 8.4:+56645062 | MS.gene78666:CDS |
| CAAGCCGGTCACAACTAAAA+TGG | 0.339053 | 8.4:+56645268 | MS.gene78666:CDS |
| AAGGGCCAAGTATGGATAAA+TGG | 0.348408 | 8.4:+56645436 | MS.gene78666:CDS |
| GCTCCCATTGCCCCGCTCTC+TGG | 0.348831 | 8.4:-56642257 | None:intergenic |
| TGCAAATATGGCTGTTGGAT+TGG | 0.363301 | 8.4:+56642307 | MS.gene78666:CDS |
| GACAAAGCATAGGAAGATAT+TGG | 0.368369 | 8.4:+56645458 | MS.gene78666:CDS |
| CAGCGTGACTGTCGGATTGC+CGG | 0.369336 | 8.4:+56644802 | MS.gene78666:CDS |
| AGAGAAGTTGCACATTTAAT+GGG | 0.370621 | 8.4:+56644738 | MS.gene78666:CDS |
| TGAAAAGCTGTTTCAGTCTC+AGG | 0.371686 | 8.4:+56641890 | MS.gene78666:CDS |
| GAGACACCAGCGACTATCTA+TGG | 0.372196 | 8.4:+56644183 | MS.gene78666:CDS |
| TCCGTTCTGAAGCTTATTCC+GGG | 0.373173 | 8.4:-56641707 | None:intergenic |
| AGGATCTGTCGCATAATAAA+TGG | 0.374726 | 8.4:+56645052 | MS.gene78666:CDS |
| GATGCTCCAATTGATGAATA+TGG | 0.376118 | 8.4:+56643063 | MS.gene78666:CDS |
| GATCCTACTGTTACACCATT+AGG | 0.383098 | 8.4:+56643438 | MS.gene78666:CDS |
| GCAATCAGGAAGGATACTTA+TGG | 0.386473 | 8.4:-56643709 | None:intergenic |
| AAAGAGCTCACCACAGGATC+CGG | 0.390775 | 8.4:-56642371 | None:intergenic |
| AACATCAAGACCACCATGTT+TGG | 0.392980 | 8.4:-56641310 | None:intergenic |
| TCAAGACCATGGAGCACAAC+TGG | 0.398051 | 8.4:-56645018 | None:intergenic |
| TTCCACTCAGCGCATATATA+AGG | 0.400728 | 8.4:-56641561 | None:intergenic |
| ACCTGCTGAAGTGTTCCTAA+TGG | 0.401362 | 8.4:-56643453 | None:intergenic |
| CACTATGTTTAGGTTTGGTC+AGG | 0.404037 | 8.4:+56643343 | MS.gene78666:intron |
| AAGAACTTGGCGGGAATCCT+TGG | 0.405390 | 8.4:+56646188 | MS.gene78666:CDS |
| AAGGAAGATATGATTTAGTA+AGG | 0.409592 | 8.4:+56641487 | MS.gene78666:CDS |
| TGAGCATGCTTTGGTTTCTT+CGG | 0.409709 | 8.4:+56643416 | MS.gene78666:CDS |
| ACTACTATTAGGTTCTTTGT+TGG | 0.415891 | 8.4:-56646160 | None:intergenic |
| GATTGGGAACAGGAGTCCCT+TGG | 0.418192 | 8.4:+56642324 | MS.gene78666:CDS |
| TATAGACACTTATGTCTTCT+GGG | 0.418303 | 8.4:+56641332 | MS.gene78666:CDS |
| ATATGCGCTGAGTGGAACTT+TGG | 0.418404 | 8.4:+56641567 | MS.gene78666:CDS |
| CTACAGATTAATTCATGTAA+TGG | 0.419307 | 8.4:+56642547 | MS.gene78666:intron |
| CTTCTCTAGACGAAAGTTCA+AGG | 0.419593 | 8.4:+56644120 | MS.gene78666:CDS |
| GGGCAACGAACCATTGGCTT+TGG | 0.420385 | 8.4:+56645396 | MS.gene78666:CDS |
| ATGGGGTCTCAGCTAATGAT+TGG | 0.421674 | 8.4:+56645223 | MS.gene78666:CDS |
| GAACTGGTCGCTGGTGAATT+GGG | 0.422236 | 8.4:-56642757 | None:intergenic |
| AACGGATAACGGACCTTTCA+AGG | 0.423232 | 8.4:+56641724 | MS.gene78666:CDS |
| TACATTTGCAGTATTAAATA+CGG | 0.423954 | 8.4:-56643739 | None:intergenic |
| CCGTCCATGTGTTTGCTAAC+GGG | 0.424113 | 8.4:+56644593 | MS.gene78666:CDS |
| CAAGCGATGTGAGCATGCTT+TGG | 0.424324 | 8.4:+56643407 | MS.gene78666:CDS |
| GTATGGGTAAGGGCCAAGTA+TGG | 0.425767 | 8.4:+56645428 | MS.gene78666:CDS |
| GTATTCTCTGCAGGAACTAC+AGG | 0.432210 | 8.4:+56643600 | MS.gene78666:CDS |
| GCAATTCCTGCAACTATTCT+GGG | 0.432599 | 8.4:+56645503 | MS.gene78666:CDS |
| CTGTCGATTCTAGGTTCTCA+TGG | 0.435814 | 8.4:+56644075 | MS.gene78666:CDS |
| GCAAATATGGCTGTTGGATT+GGG | 0.435937 | 8.4:+56642308 | MS.gene78666:CDS |
| GAATGTCCCAGAATAGTTGC+AGG | 0.446858 | 8.4:-56645509 | None:intergenic |
| TTTGTCCATTTATCCATACT+TGG | 0.449902 | 8.4:-56645441 | None:intergenic |
| ACGAATATGGACCAGAGAGC+GGG | 0.449957 | 8.4:+56642246 | MS.gene78666:CDS |
| AATTCACCAGCGACCAGTTC+AGG | 0.450278 | 8.4:+56642760 | MS.gene78666:CDS |
| GGCACATACTTCAACCAAAC+AGG | 0.450745 | 8.4:-56641686 | None:intergenic |
| CAGGCTCATGTATTCTCTGC+AGG | 0.451671 | 8.4:+56643591 | MS.gene78666:intron |
| GCAGACTGCACATTAATGTT+GGG | 0.452299 | 8.4:-56644562 | None:intergenic |
| AATACGGAAGTTATGCAATC+AGG | 0.453209 | 8.4:-56643723 | None:intergenic |
| AGCGGGGCAATGGGAGCTGC+TGG | 0.456168 | 8.4:+56642263 | MS.gene78666:CDS |
| TACCATGGAGGAACCAACTT+TGG | 0.460352 | 8.4:+56642997 | MS.gene78666:CDS |
| TCTAAAGTCTGCTGCTACTG+TGG | 0.461055 | 8.4:+56643650 | MS.gene78666:CDS |
| ATAAGGTCCAATGCGGAGAT+TGG | 0.463256 | 8.4:-56641544 | None:intergenic |
| TGAATTTGGTATCACCCAAT+GGG | 0.463630 | 8.4:+56645205 | MS.gene78666:CDS |
| AGACCTGCAAAGTGCCAACT+TGG | 0.468347 | 8.4:+56645532 | MS.gene78666:CDS |
| AACATTAATGTGCAGTCTGC+AGG | 0.468569 | 8.4:+56644565 | MS.gene78666:CDS |
| TATTGGATGGCTTATGCAAA+GGG | 0.471536 | 8.4:+56645475 | MS.gene78666:CDS |
| TTATTATGCGACAGATCCTT+CGG | 0.472013 | 8.4:-56645048 | None:intergenic |
| ATTAAGGGTATTACATTGCC+AGG | 0.472942 | 8.4:-56641372 | None:intergenic |
| ATGGCTGTTGGATTGGGAAC+AGG | 0.475126 | 8.4:+56642314 | MS.gene78666:CDS |
| AGTTGCTCGTTTCATTCAGA+AGG | 0.475641 | 8.4:+56642796 | MS.gene78666:CDS |
| CATTATGAAACATGGGAGAC+GGG | 0.480780 | 8.4:+56644985 | MS.gene78666:CDS |
| GGACCAGAGAGCGGGGCAAT+GGG | 0.481155 | 8.4:+56642254 | MS.gene78666:CDS |
| CTTTATGCCAATCTCCGCAT+TGG | 0.482995 | 8.4:+56641537 | MS.gene78666:CDS |
| TATGCGCTGAGTGGAACTTT+GGG | 0.484699 | 8.4:+56641568 | MS.gene78666:CDS |
| TGCAGACTGCACATTAATGT+TGG | 0.486330 | 8.4:-56644563 | None:intergenic |
| GAACCATTGGCTTTGGACCT+AGG | 0.487914 | 8.4:+56645403 | MS.gene78666:CDS |
| AGTTCAAGGATTACAGCTGC+TGG | 0.488592 | 8.4:+56644134 | MS.gene78666:CDS |
| GGTGTAGAGGAATTCCTGTT+TGG | 0.489840 | 8.4:+56641672 | MS.gene78666:intron |
| GCAAATGCTAGATCCTGAAC+TGG | 0.493575 | 8.4:-56642773 | None:intergenic |
| TCATAGCTTGTAGTAATGAA+TGG | 0.494227 | 8.4:-56643036 | None:intergenic |
| ATTGGGAACAGGAGTCCCTT+GGG | 0.494679 | 8.4:+56642325 | MS.gene78666:CDS |
| ACATGGGAGACGGGGATCAC+TGG | 0.494793 | 8.4:+56644994 | MS.gene78666:CDS |
| ACTGGTCCAGTTGTGCTCCA+TGG | 0.498783 | 8.4:+56645012 | MS.gene78666:CDS |
| TGGTCCAATAATTCTCTCTC+AGG | 0.502761 | 8.4:+56641914 | MS.gene78666:CDS |
| GCCAATGGTTCGTTGCCCTC+AGG | 0.502891 | 8.4:-56645391 | None:intergenic |
| ACCAACTTTGGACGATCAGC+TGG | 0.503084 | 8.4:+56643009 | MS.gene78666:CDS |
| TGGGTTTAGGCTGCAATGCA+AGG | 0.504866 | 8.4:+56641834 | MS.gene78666:intron |
| TCATTAGCTGAGACCCCATT+GGG | 0.506426 | 8.4:-56645219 | None:intergenic |
| GGCCCTTACCCATACTTCCT+AGG | 0.508915 | 8.4:-56645420 | None:intergenic |
| TGGACCAGAGAGCGGGGCAA+TGG | 0.509550 | 8.4:+56642253 | MS.gene78666:CDS |
| GATGTTCATGAACCATCTCC+TGG | 0.509570 | 8.4:+56641354 | MS.gene78666:CDS |
| ATAGTAGTGTTTGAAGAACT+TGG | 0.510118 | 8.4:+56646175 | MS.gene78666:CDS |
| GGACCTAGGAAGTATGGGTA+AGG | 0.511953 | 8.4:+56645417 | MS.gene78666:CDS |
| GCCTGAGGGCAACGAACCAT+TGG | 0.512441 | 8.4:+56645390 | MS.gene78666:CDS |
| AAGGGTCGGCATTTGGGACG+AGG | 0.513971 | 8.4:+56644711 | MS.gene78666:intron |
| GTTGGCTTTAGCCATGACCT+TGG | 0.514639 | 8.4:-56646142 | None:intergenic |
| GGTATTACATTGCCAGGAGA+TGG | 0.515365 | 8.4:-56641366 | None:intergenic |
| AAGAGCTCACCACAGGATCC+GGG | 0.516437 | 8.4:-56642370 | None:intergenic |
| CTAGCATGTGGACGGAGTCT+TGG | 0.516868 | 8.4:+56642611 | MS.gene78666:CDS |
| GCCGTCCATGTGTTTGCTAA+CGG | 0.518416 | 8.4:+56644592 | MS.gene78666:CDS |
| TGGGGTCTCAGCTAATGATT+GGG | 0.518992 | 8.4:+56645224 | MS.gene78666:CDS |
| ATAAGCTTCAGAACGGATAA+CGG | 0.519465 | 8.4:+56641713 | MS.gene78666:CDS |
| ACCATTAGGAACACTTCAGC+AGG | 0.524150 | 8.4:+56643452 | MS.gene78666:CDS |
| ATCATTAGCTGAGACCCCAT+TGG | 0.526712 | 8.4:-56645220 | None:intergenic |
| GGCACTATGACTTGCCTCCA+TGG | 0.528134 | 8.4:+56643685 | MS.gene78666:CDS |
| GCCAAAATATAGTCATTTGA+AGG | 0.528138 | 8.4:+56643368 | MS.gene78666:CDS |
| CAAGACTCCGTCCACATGCT+AGG | 0.528557 | 8.4:-56642610 | None:intergenic |
| GTGAATTTGGTATCACCCAA+TGG | 0.529765 | 8.4:+56645204 | MS.gene78666:CDS |
| GCGACAGATCCTTCGGTCCA+TGG | 0.535103 | 8.4:-56645041 | None:intergenic |
| TGGGCTGCAAATATGGCTGT+TGG | 0.538441 | 8.4:+56642302 | MS.gene78666:CDS |
| TAGTGTTTGAAGAACTTGGC+GGG | 0.545727 | 8.4:+56646179 | MS.gene78666:CDS |
| GCAAAGTGCCAACTTGGTTG+TGG | 0.547646 | 8.4:+56645538 | MS.gene78666:CDS |
| TCTCCCATGTTTCATAATGT+CGG | 0.551448 | 8.4:-56644981 | None:intergenic |
| ACCAGCTGATCGTCCAAAGT+TGG | 0.553003 | 8.4:-56643010 | None:intergenic |
| AAAATTGTACCATCTTTGAG+TGG | 0.553803 | 8.4:-56645566 | None:intergenic |
| GGGCCAGTTAATCTACATGC+TGG | 0.558839 | 8.4:+56644758 | MS.gene78666:CDS |
| GCTCTTCTCAGCGTGACTGT+CGG | 0.563832 | 8.4:+56644794 | MS.gene78666:CDS |
| CATGAGAACCTAGAATCGAC+AGG | 0.568957 | 8.4:-56644074 | None:intergenic |
| GGACGGAGTCTTGGAGTGGC+TGG | 0.569999 | 8.4:+56642620 | MS.gene78666:CDS |
| GTTCCTAATGGTGTAACAGT+AGG | 0.571055 | 8.4:-56643441 | None:intergenic |
| GGTATCATGTTCCAAGGTCA+TGG | 0.571810 | 8.4:+56646131 | MS.gene78666:intron |
| AAATTGTACCATCTTTGAGT+GGG | 0.574497 | 8.4:-56645565 | None:intergenic |
| GCTCGTTTCATTCAGAAGGG+TGG | 0.575864 | 8.4:+56642800 | MS.gene78666:CDS |
| CTAGATCCTGAACTGGTCGC+TGG | 0.577176 | 8.4:-56642766 | None:intergenic |
| TATGTACCATAGATAGTCGC+TGG | 0.579264 | 8.4:-56644189 | None:intergenic |
| TCATCAGAATCATTTCTTCG+AGG | 0.581779 | 8.4:+56644529 | MS.gene78666:CDS |
| GTGCTCCATGGTCTTGACCA+TGG | 0.585112 | 8.4:+56645024 | MS.gene78666:CDS |
| GCTTTGGACCTAGGAAGTAT+GGG | 0.586075 | 8.4:+56645412 | MS.gene78666:CDS |
| GTCCAAAGTTGGTTCCTCCA+TGG | 0.588793 | 8.4:-56642999 | None:intergenic |
| GTTGCTCGTTTCATTCAGAA+GGG | 0.589466 | 8.4:+56642797 | MS.gene78666:CDS |
| ATATTGGATGGCTTATGCAA+AGG | 0.589804 | 8.4:+56645474 | MS.gene78666:CDS |
| TGGTGTCTCTTGTAACATTG+AGG | 0.590267 | 8.4:-56644169 | None:intergenic |
| TTGGCCGACATTATGAAACA+TGG | 0.592890 | 8.4:+56644977 | MS.gene78666:CDS |
| TCAGAATCATTTCTTCGAGG+AGG | 0.593391 | 8.4:+56644532 | MS.gene78666:CDS |
| TGGATAAATGGACAAAGCAT+AGG | 0.594045 | 8.4:+56645448 | MS.gene78666:CDS |
| TCGGTCCATGGTCAAGACCA+TGG | 0.594522 | 8.4:-56645029 | None:intergenic |
| AGTCCCTTGGGTGATGTGCA+AGG | 0.594773 | 8.4:+56642337 | MS.gene78666:CDS |
| GTGGACAACCCACTCAAAGA+TGG | 0.595248 | 8.4:+56645557 | MS.gene78666:CDS |
| GTTTGGTTGAAGTATGTGCC+CGG | 0.595819 | 8.4:+56641689 | MS.gene78666:CDS |
| ACATTATGAAACATGGGAGA+CGG | 0.597371 | 8.4:+56644984 | MS.gene78666:CDS |
| TGTCGATTCTAGGTTCTCAT+GGG | 0.600914 | 8.4:+56644076 | MS.gene78666:CDS |
| TGGTCTTGACCATGGACCGA+AGG | 0.602007 | 8.4:+56645032 | MS.gene78666:CDS |
| GTGCAAGGAAAATGATGCCC+CGG | 0.603150 | 8.4:+56642352 | MS.gene78666:CDS |
| ATTCACTAGCTACTCCAAGC+CGG | 0.607564 | 8.4:+56645253 | MS.gene78666:CDS |
| CTTCCTAGGTCCAAAGCCAA+TGG | 0.611721 | 8.4:-56645406 | None:intergenic |
| GTCGCAGGTATCATGTTCCA+AGG | 0.612046 | 8.4:+56646125 | MS.gene78666:intron |
| ACTATCTATGGTACATAACC+AGG | 0.614868 | 8.4:+56644195 | MS.gene78666:CDS |
| CTAATTAAGAAAGCCAAACA+TGG | 0.617287 | 8.4:+56641297 | MS.gene78666:CDS |
| AAGCATAGGAAGATATTGGA+TGG | 0.618267 | 8.4:+56645462 | MS.gene78666:CDS |
| CCCGTTAGCAAACACATGGA+CGG | 0.620558 | 8.4:-56644593 | None:intergenic |
| ATTATGAAACATGGGAGACG+GGG | 0.624351 | 8.4:+56644986 | MS.gene78666:CDS |
| CGAATATGGACCAGAGAGCG+GGG | 0.624874 | 8.4:+56642247 | MS.gene78666:CDS |
| AACGAATATGGACCAGAGAG+CGG | 0.624993 | 8.4:+56642245 | MS.gene78666:CDS |
| GACCTAGGAAGTATGGGTAA+GGG | 0.625201 | 8.4:+56645418 | MS.gene78666:CDS |
| TATGATAAATTATAGTACCA+TGG | 0.626716 | 8.4:+56642982 | MS.gene78666:intron |
| TGGGTTGTCCACAACCAAGT+TGG | 0.630478 | 8.4:-56645546 | None:intergenic |
| TTTCCTTGCACATCACCCAA+GGG | 0.630779 | 8.4:-56642340 | None:intergenic |
| AGAGCTCACCACAGGATCCG+GGG | 0.631333 | 8.4:-56642369 | None:intergenic |
| GAAAAGCTGTTTCAGTCTCA+GGG | 0.631820 | 8.4:+56641891 | MS.gene78666:CDS |
| CTCATATGTGAATTACTACA+TGG | 0.632328 | 8.4:+56642823 | MS.gene78666:CDS |
| GGAAGGATACTTATGGACCA+TGG | 0.637248 | 8.4:-56643702 | None:intergenic |
| CGGAAGTTATGCAATCAGGA+AGG | 0.637295 | 8.4:-56643719 | None:intergenic |
| TGGTCATGCATACCTAAACT+GGG | 0.638626 | 8.4:+56642283 | MS.gene78666:CDS |
| AACTTTGGACGATCAGCTGG+TGG | 0.640845 | 8.4:+56643012 | MS.gene78666:CDS |
| GTCACAACTAAAATGGTACA+AGG | 0.642717 | 8.4:+56645275 | MS.gene78666:CDS |
| AACCATATAAGCCTAGCATG+TGG | 0.643949 | 8.4:+56642599 | MS.gene78666:CDS |
| GTAGTGTTTGAAGAACTTGG+CGG | 0.651378 | 8.4:+56646178 | MS.gene78666:CDS |
| ATATAAGCCTAGCATGTGGA+CGG | 0.652636 | 8.4:+56642603 | MS.gene78666:CDS |
| GACCTTATATATGCGCTGAG+TGG | 0.656602 | 8.4:+56641559 | MS.gene78666:CDS |
| AAATGATGCCCCGGATCCTG+TGG | 0.661573 | 8.4:+56642361 | MS.gene78666:CDS |
| GCCCGGAATAAGCTTCAGAA+CGG | 0.662264 | 8.4:+56641706 | MS.gene78666:CDS |
| ATTGCCCGTTAGCAAACACA+TGG | 0.666309 | 8.4:-56644597 | None:intergenic |
| TTGAGTTCACTAACGAGCTG+CGG | 0.670744 | 8.4:-56646245 | None:intergenic |
| GGTGGGAACTCAAACGTCAG+TGG | 0.672709 | 8.4:+56644040 | MS.gene78666:intron |
| TGGCCGACATTATGAAACAT+GGG | 0.682911 | 8.4:+56644978 | MS.gene78666:CDS |
| CGCATATATAAGGTCCAATG+CGG | 0.688851 | 8.4:-56641551 | None:intergenic |
| ATTAAGAAAGCCAAACATGG+TGG | 0.693632 | 8.4:+56641300 | MS.gene78666:CDS |
| ATGTGGACGGAGTCTTGGAG+TGG | 0.699415 | 8.4:+56642616 | MS.gene78666:CDS |
| ACAGGTTGGACTAAAAGGAG+AGG | 0.707740 | 8.4:+56645179 | MS.gene78666:intron |
| GAATTTGGTATCACCCAATG+GGG | 0.708312 | 8.4:+56645206 | MS.gene78666:CDS |
| GATAAATTATAGTACCATGG+AGG | 0.734146 | 8.4:+56642985 | MS.gene78666:intron |
| AAGCTGTTTCAGTCTCAGGG+TGG | 0.745842 | 8.4:+56641894 | MS.gene78666:CDS |
| AGGATACTTATGGACCATGG+AGG | 0.747272 | 8.4:-56643699 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATTATCAATATTTCAAAA+TGG | + | chr8.4:56645701-56645720 | MS.gene78666:intron | 10.0% |
| !!! | TTTACAATTTTATTCTTTAA+TGG | + | chr8.4:56641651-56641670 | MS.gene78666:intron | 10.0% |
| !! | AAAAAGGAATGAAATTAAAA+TGG | - | chr8.4:56641614-56641633 | None:intergenic | 15.0% |
| !! | AATATAGGAATAAATTATGA+TGG | - | chr8.4:56643964-56643983 | None:intergenic | 15.0% |
| !!! | ATGATATTAATTTGATAACA+TGG | - | chr8.4:56645825-56645844 | None:intergenic | 15.0% |
| !!! | TATATATATTTTTTGGGTTT+AGG | + | chr8.4:56641821-56641840 | MS.gene78666:intron | 15.0% |
| !!! | TCTTTGATTTTATGATAATT+TGG | + | chr8.4:56641756-56641775 | MS.gene78666:intron | 15.0% |
| !!! | TGATATTAATTTGATAACAT+GGG | - | chr8.4:56645824-56645843 | None:intergenic | 15.0% |
| !!! | TTGAAATATTGATAATATGA+GGG | - | chr8.4:56645699-56645718 | None:intergenic | 15.0% |
| !!! | TTTGAAATATTGATAATATG+AGG | - | chr8.4:56645700-56645719 | None:intergenic | 15.0% |
| !! | AATAATAATATTAGTGGCAT+TGG | - | chr8.4:56646039-56646058 | None:intergenic | 20.0% |
| !! | ACTATTACATCACATTTAAA+TGG | - | chr8.4:56643938-56643957 | None:intergenic | 20.0% |
| !! | ACTCAATAAGTATATAATGA+TGG | - | chr8.4:56642500-56642519 | None:intergenic | 20.0% |
| !! | CACAACAAAATTACATAAAA+AGG | - | chr8.4:56641630-56641649 | None:intergenic | 20.0% |
| !! | CAGAAGAATAATAATATTAG+TGG | - | chr8.4:56646045-56646064 | None:intergenic | 20.0% |
| !! | CTGAAAAATAAATTCATAGA+AGG | - | chr8.4:56642859-56642878 | None:intergenic | 20.0% |
| !! | GGTACTATAATTTATCATAA+CGG | - | chr8.4:56642981-56643000 | None:intergenic | 20.0% |
| !! | TACATTTGCAGTATTAAATA+CGG | - | chr8.4:56643742-56643761 | None:intergenic | 20.0% |
| !! | TATAATTTCAATGACCAAAT+TGG | + | chr8.4:56645950-56645969 | MS.gene78666:intron | 20.0% |
| !! | TATGATAAATTATAGTACCA+TGG | + | chr8.4:56642982-56643001 | MS.gene78666:intron | 20.0% |
| !! | TGACTTTAACTATTTGAATA+AGG | + | chr8.4:56642890-56642909 | MS.gene78666:intron | 20.0% |
| !! | TGATATATATTTATACAGGT+GGG | + | chr8.4:56644023-56644042 | MS.gene78666:intron | 20.0% |
| !!! | GATATTAATTTGATAACATG+GGG | - | chr8.4:56645823-56645842 | None:intergenic | 20.0% |
| !!! | TTGTTTTTCTGATTATGTAT+GGG | + | chr8.4:56641443-56641462 | MS.gene78666:intron | 20.0% |
| !!! | TTTATGATAATTTGGTTTCT+CGG | + | chr8.4:56641764-56641783 | MS.gene78666:intron | 20.0% |
| !!! | TTTATGTTAAAGCATTATTG+CGG | + | chr8.4:56643526-56643545 | MS.gene78666:intron | 20.0% |
| !!! | TTTCAAATGTTACTGTTTTT+TGG | + | chr8.4:56644479-56644498 | MS.gene78666:intron | 20.0% |
| !!! | TTTCTAGTTTGTATCTATTT+TGG | - | chr8.4:56643846-56643865 | None:intergenic | 20.0% |
| ! | AAAATTTCTTCTGCTTGAAT+TGG | - | chr8.4:56644352-56644371 | None:intergenic | 25.0% |
| ! | AACGTTCTTCCAATAAAAAA+TGG | - | chr8.4:56644959-56644978 | None:intergenic | 25.0% |
| ! | AAGAAAAATTCAACCTTGAA+AGG | - | chr8.4:56641740-56641759 | None:intergenic | 25.0% |
| ! | AAGGAAGATATGATTTAGTA+AGG | + | chr8.4:56641487-56641506 | MS.gene78666:CDS | 25.0% |
| ! | AATCTGAAAGATGCTTAAAA+TGG | - | chr8.4:56644409-56644428 | None:intergenic | 25.0% |
| ! | AATGATTCCTAAAGTTGAAA+AGG | - | chr8.4:56645890-56645909 | None:intergenic | 25.0% |
| ! | ATCTTGAAGTAGTAATTTGA+TGG | - | chr8.4:56642031-56642050 | None:intergenic | 25.0% |
| ! | ATTAAGACAATGCAAAAAGT+GGG | + | chr8.4:56641513-56641532 | MS.gene78666:CDS | 25.0% |
| ! | ATTAATTCTGAGTTAACTGA+AGG | + | chr8.4:56644672-56644691 | MS.gene78666:intron | 25.0% |
| ! | ATTATTCTTCTGTATACAAG+AGG | + | chr8.4:56646053-56646072 | MS.gene78666:intron | 25.0% |
| ! | CAAATAATTGATTGATGCAA+AGG | - | chr8.4:56643996-56644015 | None:intergenic | 25.0% |
| ! | CTACAGATTAATTCATGTAA+TGG | + | chr8.4:56642547-56642566 | MS.gene78666:intron | 25.0% |
| ! | CTGATATATATTTATACAGG+TGG | + | chr8.4:56644022-56644041 | MS.gene78666:intron | 25.0% |
| ! | GGACTGATATATATTTATAC+AGG | + | chr8.4:56644019-56644038 | MS.gene78666:intron | 25.0% |
| ! | TAAAGTTGAAAAGGTTAATC+AGG | - | chr8.4:56645881-56645900 | None:intergenic | 25.0% |
| ! | TATCAAAGCAATAATTTCCT+AGG | + | chr8.4:56644304-56644323 | MS.gene78666:intron | 25.0% |
| ! | TATCTGATCTACAAAACAAT+AGG | - | chr8.4:56642059-56642078 | None:intergenic | 25.0% |
| ! | TATTAAGACAATGCAAAAAG+TGG | + | chr8.4:56641512-56641531 | MS.gene78666:CDS | 25.0% |
| ! | TTACATGAATTAATCTGTAG+TGG | - | chr8.4:56642547-56642566 | None:intergenic | 25.0% |
| ! | TTCTTACCATATTCATCAAT+TGG | - | chr8.4:56643072-56643091 | None:intergenic | 25.0% |
| ! | TTTATTCTTTAATGGTGTAG+AGG | + | chr8.4:56641659-56641678 | MS.gene78666:intron | 25.0% |
| ! | TTTGTTTGTTTAGGAAAATG+TGG | + | chr8.4:56645623-56645642 | MS.gene78666:intron | 25.0% |
| !! | AGTTTTCGTAATTCATTTGA+TGG | - | chr8.4:56644265-56644284 | None:intergenic | 25.0% |
| !! | ATCATAAGGTTTACAGATTT+TGG | + | chr8.4:56642731-56642750 | MS.gene78666:intron | 25.0% |
| !! | CAAATGTAAGAATATTTTGC+AGG | + | chr8.4:56643754-56643773 | MS.gene78666:intron | 25.0% |
| !! | TCCTTCAAATGACTATATTT+TGG | - | chr8.4:56643372-56643391 | None:intergenic | 25.0% |
| !! | TGATTAACCTTTTCAACTTT+AGG | + | chr8.4:56645880-56645899 | MS.gene78666:intron | 25.0% |
| !!! | AAATGTTACTGTTTTTTGGT+TGG | + | chr8.4:56644483-56644502 | MS.gene78666:intron | 25.0% |
| !!! | ATGATAATGACACGTTATTT+TGG | + | chr8.4:56645997-56646016 | MS.gene78666:intron | 25.0% |
| !!! | ATTTTGGAATATTGATGATG+TGG | + | chr8.4:56645907-56645926 | MS.gene78666:intron | 25.0% |
| !!! | ATTTTTTATTGGAAGAACGT+TGG | + | chr8.4:56644958-56644977 | MS.gene78666:intron | 25.0% |
| !!! | GTTGTTTTTCTGATTATGTA+TGG | + | chr8.4:56641442-56641461 | MS.gene78666:intron | 25.0% |
| !!! | TAATTTATCATAACGGACAA+AGG | - | chr8.4:56642974-56642993 | None:intergenic | 25.0% |
| !!! | TGATAATGACACGTTATTTT+GGG | + | chr8.4:56645998-56646017 | MS.gene78666:intron | 25.0% |
| !!! | TTACTCTTGCCATTTTTTAT+TGG | + | chr8.4:56644947-56644966 | MS.gene78666:intron | 25.0% |
| !!! | TTCAACTTTAGGAATCATTT+TGG | + | chr8.4:56645891-56645910 | MS.gene78666:intron | 25.0% |
| !!! | TTCAAGTTGGATTTAGAATA+TGG | - | chr8.4:56644841-56644860 | None:intergenic | 25.0% |
| AAAATTGTACCATCTTTGAG+TGG | - | chr8.4:56645569-56645588 | None:intergenic | 30.0% | |
| AAAGGGCTTCATGAAAATTA+AGG | - | chr8.4:56641391-56641410 | None:intergenic | 30.0% | |
| AAATTGTACCATCTTTGAGT+GGG | - | chr8.4:56645568-56645587 | None:intergenic | 30.0% | |
| AACAAGCAAAGAACTAGAAA+AGG | - | chr8.4:56643508-56643527 | None:intergenic | 30.0% | |
| AAGGGCTTCATGAAAATTAA+GGG | - | chr8.4:56641390-56641409 | None:intergenic | 30.0% | |
| ACAAGCAAAGAACTAGAAAA+GGG | - | chr8.4:56643507-56643526 | None:intergenic | 30.0% | |
| ACTACTATTAGGTTCTTTGT+TGG | - | chr8.4:56646163-56646182 | None:intergenic | 30.0% | |
| AGAGAAGTTGCACATTTAAT+GGG | + | chr8.4:56644738-56644757 | MS.gene78666:CDS | 30.0% | |
| AGTAGAATATGTTGTTGAAC+AGG | + | chr8.4:56645161-56645180 | MS.gene78666:intron | 30.0% | |
| ATAGTAGTGTTTGAAGAACT+TGG | + | chr8.4:56646175-56646194 | MS.gene78666:CDS | 30.0% | |
| ATATGGTATTAAGCACTAAC+CGG | - | chr8.4:56644824-56644843 | None:intergenic | 30.0% | |
| ATCTGTAAACCTTATGATCA+TGG | - | chr8.4:56642729-56642748 | None:intergenic | 30.0% | |
| ATGTTTACAAGTGTTCTGTT+TGG | + | chr8.4:56646096-56646115 | MS.gene78666:intron | 30.0% | |
| ATTATATCACTCATCTTACC+TGG | - | chr8.4:56644216-56644235 | None:intergenic | 30.0% | |
| CCTAAACAAACAAAGAAGTA+AGG | - | chr8.4:56645617-56645636 | None:intergenic | 30.0% | |
| CTAATTAAGAAAGCCAAACA+TGG | + | chr8.4:56641297-56641316 | MS.gene78666:CDS | 30.0% | |
| CTAGGCTTATATGGTTTATT+CGG | - | chr8.4:56642595-56642614 | None:intergenic | 30.0% | |
| CTCATATGTGAATTACTACA+TGG | + | chr8.4:56642823-56642842 | MS.gene78666:CDS | 30.0% | |
| CTTATGTTTCATCTACTTCT+AGG | - | chr8.4:56641990-56642009 | None:intergenic | 30.0% | |
| GAATCCTTGGAAAATTTCTT+TGG | + | chr8.4:56646201-56646220 | MS.gene78666:CDS | 30.0% | |
| GAGTCTCAAGTTCTATATTT+AGG | + | chr8.4:56642470-56642489 | MS.gene78666:intron | 30.0% | |
| GATAAATTATAGTACCATGG+AGG | + | chr8.4:56642985-56643004 | MS.gene78666:intron | 30.0% | |
| GCATCAATCAATTATTTGAC+TGG | + | chr8.4:56643998-56644017 | MS.gene78666:intron | 30.0% | |
| GCCAAAATATAGTCATTTGA+AGG | + | chr8.4:56643368-56643387 | MS.gene78666:CDS | 30.0% | |
| GTTCTTCAAACACTACTATT+AGG | - | chr8.4:56646174-56646193 | None:intergenic | 30.0% | |
| TATAGACACTTATGTCTTCT+GGG | + | chr8.4:56641332-56641351 | MS.gene78666:CDS | 30.0% | |
| TATGTCGCAAATATCCAATT+TGG | - | chr8.4:56645967-56645986 | None:intergenic | 30.0% | |
| TATGTGAATTACTACATGGT+TGG | + | chr8.4:56642827-56642846 | MS.gene78666:intron | 30.0% | |
| TGATTCACTGAGAATTTGAA+TGG | + | chr8.4:56643138-56643157 | MS.gene78666:intron | 30.0% | |
| TTAAGACAATGCAAAAAGTG+GGG | + | chr8.4:56641514-56641533 | MS.gene78666:CDS | 30.0% | |
| TTATAGACACTTATGTCTTC+TGG | + | chr8.4:56641331-56641350 | MS.gene78666:CDS | 30.0% | |
| TTCTAGATTGAGAACGAATA+TGG | + | chr8.4:56642233-56642252 | MS.gene78666:intron | 30.0% | |
| TTCTATTCTCCATGATCATA+AGG | + | chr8.4:56642717-56642736 | MS.gene78666:intron | 30.0% | |
| TTTGTCCATTTATCCATACT+TGG | - | chr8.4:56645444-56645463 | None:intergenic | 30.0% | |
| ! | AGAGAGATCAGAAGTATAAA+AGG | - | chr8.4:56642695-56642714 | None:intergenic | 30.0% |
| ! | ATAAGGTTTACAGATTTTGG+TGG | + | chr8.4:56642734-56642753 | MS.gene78666:intron | 30.0% |
| ! | ATTAATCTGTAGTGGAGAAT+TGG | - | chr8.4:56642539-56642558 | None:intergenic | 30.0% |
| ! | CCTTACTTCTTTGTTTGTTT+AGG | + | chr8.4:56645614-56645633 | MS.gene78666:intron | 30.0% |
| ! | CTACTGTGGTTTTCAATAAT+AGG | + | chr8.4:56643664-56643683 | MS.gene78666:CDS | 30.0% |
| ! | GAGAGATCAGAAGTATAAAA+GGG | - | chr8.4:56642694-56642713 | None:intergenic | 30.0% |
| ! | TAAAAGCTCTCTTTTTGTTC+AGG | - | chr8.4:56643310-56643329 | None:intergenic | 30.0% |
| ! | TCATAGCTTGTAGTAATGAA+TGG | - | chr8.4:56643039-56643058 | None:intergenic | 30.0% |
| ! | TTCACCAAAGAAATTTTCCA+AGG | - | chr8.4:56646208-56646227 | None:intergenic | 30.0% |
| ! | TTTTGTTGCAAGAAAACATG+TGG | + | chr8.4:56642922-56642941 | MS.gene78666:intron | 30.0% |
| !! | ACTGATTTCTTTTAAAGGGT+CGG | + | chr8.4:56644697-56644716 | MS.gene78666:intron | 30.0% |
| !! | AGGTGACTGATTTCTTTTAA+AGG | + | chr8.4:56644692-56644711 | MS.gene78666:intron | 30.0% |
| !! | ATATTGATGATGTGGATACT+AGG | + | chr8.4:56645915-56645934 | MS.gene78666:intron | 30.0% |
| !! | GCATAATAAATGGTCTTATC+AGG | + | chr8.4:56645062-56645081 | MS.gene78666:CDS | 30.0% |
| !! | GCTATATATAGTTCTGATGT+TGG | + | chr8.4:56642646-56642665 | MS.gene78666:intron | 30.0% |
| !! | GGTGACTGATTTCTTTTAAA+GGG | + | chr8.4:56644693-56644712 | MS.gene78666:intron | 30.0% |
| AAGCACATACAGAGAGAATA+AGG | - | chr8.4:56643561-56643580 | None:intergenic | 35.0% | |
| AAGCATAGGAAGATATTGGA+TGG | + | chr8.4:56645462-56645481 | MS.gene78666:CDS | 35.0% | |
| AATACGGAAGTTATGCAATC+AGG | - | chr8.4:56643726-56643745 | None:intergenic | 35.0% | |
| AATATCGAAGAATCTGCTTC+TGG | - | chr8.4:56643106-56643125 | None:intergenic | 35.0% | |
| AATTCAATCAGTGACAAGCA+AGG | - | chr8.4:56644915-56644934 | None:intergenic | 35.0% | |
| ACATTATGAAACATGGGAGA+CGG | + | chr8.4:56644984-56645003 | MS.gene78666:CDS | 35.0% | |
| ACTATCTATGGTACATAACC+AGG | + | chr8.4:56644195-56644214 | MS.gene78666:CDS | 35.0% | |
| AGGATCTGTCGCATAATAAA+TGG | + | chr8.4:56645052-56645071 | MS.gene78666:CDS | 35.0% | |
| ATAAGCTTCAGAACGGATAA+CGG | + | chr8.4:56641713-56641732 | MS.gene78666:CDS | 35.0% | |
| ATATTGGATGGCTTATGCAA+AGG | + | chr8.4:56645474-56645493 | MS.gene78666:CDS | 35.0% | |
| ATTAAGAAAGCCAAACATGG+TGG | + | chr8.4:56641300-56641319 | MS.gene78666:CDS | 35.0% | |
| ATTGATTGATGCAAAGGACA+AGG | - | chr8.4:56643990-56644009 | None:intergenic | 35.0% | |
| CAAAGCAATAATTTCCTAGG+CGG | + | chr8.4:56644307-56644326 | MS.gene78666:intron | 35.0% | |
| CAAAGGACAAGGCTTAATAT+AGG | - | chr8.4:56643979-56643998 | None:intergenic | 35.0% | |
| CAAGAATCAACTCAACTTGA+GGG | - | chr8.4:56643231-56643250 | None:intergenic | 35.0% | |
| CAGAGAAGTTGCACATTTAA+TGG | + | chr8.4:56644737-56644756 | MS.gene78666:CDS | 35.0% | |
| CATACCTGAGAGAGAATTAT+TGG | - | chr8.4:56641921-56641940 | None:intergenic | 35.0% | |
| GAATATGTTGTTGAACAGGT+TGG | + | chr8.4:56645165-56645184 | MS.gene78666:intron | 35.0% | |
| GACAAAGCATAGGAAGATAT+TGG | + | chr8.4:56645458-56645477 | MS.gene78666:CDS | 35.0% | |
| GATAATATGAGGGACTAGAT+TGG | - | chr8.4:56645689-56645708 | None:intergenic | 35.0% | |
| GATGCTCCAATTGATGAATA+TGG | + | chr8.4:56643063-56643082 | MS.gene78666:CDS | 35.0% | |
| GGTCAAGTACAGGAATTTAT+TGG | - | chr8.4:56644388-56644407 | None:intergenic | 35.0% | |
| TATTGGATGGCTTATGCAAA+GGG | + | chr8.4:56645475-56645494 | MS.gene78666:CDS | 35.0% | |
| TCATCAGAATCATTTCTTCG+AGG | + | chr8.4:56644529-56644548 | MS.gene78666:CDS | 35.0% | |
| TCTCCCATGTTTCATAATGT+CGG | - | chr8.4:56644984-56645003 | None:intergenic | 35.0% | |
| TGAAATGTTGAGAACTGAGA+AGG | - | chr8.4:56644464-56644483 | None:intergenic | 35.0% | |
| TGAATTTGGTATCACCCAAT+GGG | + | chr8.4:56645205-56645224 | MS.gene78666:CDS | 35.0% | |
| TGATAACAGGTCAAAACAGA+GGG | - | chr8.4:56645760-56645779 | None:intergenic | 35.0% | |
| TGCTTAAAATGGTCAAGTAC+AGG | - | chr8.4:56644398-56644417 | None:intergenic | 35.0% | |
| TGGATAAATGGACAAAGCAT+AGG | + | chr8.4:56645448-56645467 | MS.gene78666:CDS | 35.0% | |
| TGTGGAGTAAATACTCAAGT+TGG | + | chr8.4:56645641-56645660 | MS.gene78666:intron | 35.0% | |
| TTATTATGCGACAGATCCTT+CGG | - | chr8.4:56645051-56645070 | None:intergenic | 35.0% | |
| TTATTCTCTCTGTATGTGCT+TGG | + | chr8.4:56643560-56643579 | MS.gene78666:intron | 35.0% | |
| TTGAATGTGTGCGTAATTGA+AGG | + | chr8.4:56641951-56641970 | MS.gene78666:intron | 35.0% | |
| TTGAGCACTTCACTATGTTT+AGG | + | chr8.4:56643333-56643352 | MS.gene78666:intron | 35.0% | |
| ! | AATATTAGTGGCATTGGATC+TGG | - | chr8.4:56646033-56646052 | None:intergenic | 35.0% |
| ! | CACTTCACTATGTTTAGGTT+TGG | + | chr8.4:56643338-56643357 | MS.gene78666:intron | 35.0% |
| ! | GCATTGCAGTACAATTTTGA+AGG | + | chr8.4:56641468-56641487 | MS.gene78666:intron | 35.0% |
| ! | GCTTTTCACTCTTCATCATT+TGG | - | chr8.4:56641878-56641897 | None:intergenic | 35.0% |
| ! | TCAGAGATGCATTTGATAAC+AGG | - | chr8.4:56645773-56645792 | None:intergenic | 35.0% |
| ! | TTGATAACAGGTCAAAACAG+AGG | - | chr8.4:56645761-56645780 | None:intergenic | 35.0% |
| !! | AACTTTCTTTAAGACCACTC+AGG | - | chr8.4:56643267-56643286 | None:intergenic | 35.0% |
| !! | ACGAAAACTTTTTGAGCTGT+TGG | + | chr8.4:56644276-56644295 | MS.gene78666:intron | 35.0% |
| !! | ACTTTCTTTAAGACCACTCA+GGG | - | chr8.4:56643266-56643285 | None:intergenic | 35.0% |
| !! | ATTAAGGGTATTACATTGCC+AGG | - | chr8.4:56641375-56641394 | None:intergenic | 35.0% |
| !! | ATTTGGTTTCTCGGTTTTGA+CGG | + | chr8.4:56641773-56641792 | MS.gene78666:intron | 35.0% |
| !! | TTTGCTAACGGGCAATTTTT+AGG | + | chr8.4:56644604-56644623 | MS.gene78666:CDS | 35.0% |
| AAAAGGAGAGGCTGTGAATT+TGG | + | chr8.4:56645191-56645210 | MS.gene78666:CDS | 40.0% | |
| AACATCAAGACCACCATGTT+TGG | - | chr8.4:56641313-56641332 | None:intergenic | 40.0% | |
| AACATTAATGTGCAGTCTGC+AGG | + | chr8.4:56644565-56644584 | MS.gene78666:CDS | 40.0% | |
| AACCATATAAGCCTAGCATG+TGG | + | chr8.4:56642599-56642618 | MS.gene78666:CDS | 40.0% | |
| AAGGGCCAAGTATGGATAAA+TGG | + | chr8.4:56645436-56645455 | MS.gene78666:CDS | 40.0% | |
| ACGGACAAAGGTGAAACTTA+AGG | - | chr8.4:56642962-56642981 | None:intergenic | 40.0% | |
| ACTGTAGCAAAGGTAAGAGA+GGG | - | chr8.4:56642129-56642148 | None:intergenic | 40.0% | |
| AGTTGCTCGTTTCATTCAGA+AGG | + | chr8.4:56642796-56642815 | MS.gene78666:CDS | 40.0% | |
| ATATAAGCCTAGCATGTGGA+CGG | + | chr8.4:56642603-56642622 | MS.gene78666:CDS | 40.0% | |
| ATGTACGTAGACTGTAGCAA+AGG | - | chr8.4:56642139-56642158 | None:intergenic | 40.0% | |
| ATGTTGAGAACTGAGAAGGT+AGG | - | chr8.4:56644460-56644479 | None:intergenic | 40.0% | |
| ATTATGAAACATGGGAGACG+GGG | + | chr8.4:56644986-56645005 | MS.gene78666:CDS | 40.0% | |
| CAAGGTAAGAGCAGTTTACT+AGG | + | chr8.4:56645293-56645312 | MS.gene78666:intron | 40.0% | |
| CATTATGAAACATGGGAGAC+GGG | + | chr8.4:56644985-56645004 | MS.gene78666:CDS | 40.0% | |
| CCAAGAATCAACTCAACTTG+AGG | - | chr8.4:56643232-56643251 | None:intergenic | 40.0% | |
| CGCACACATTCAAAAGAGAA+AGG | - | chr8.4:56641944-56641963 | None:intergenic | 40.0% | |
| CGCATATATAAGGTCCAATG+CGG | - | chr8.4:56641554-56641573 | None:intergenic | 40.0% | |
| CTGAATGCTCAAGTTCAAGT+TGG | - | chr8.4:56644854-56644873 | None:intergenic | 40.0% | |
| CTTCTCTAGACGAAAGTTCA+AGG | + | chr8.4:56644120-56644139 | MS.gene78666:CDS | 40.0% | |
| GAATTTGGTATCACCCAATG+GGG | + | chr8.4:56645206-56645225 | MS.gene78666:CDS | 40.0% | |
| GATCCTACTGTTACACCATT+AGG | + | chr8.4:56643438-56643457 | MS.gene78666:CDS | 40.0% | |
| GCAAATATGGCTGTTGGATT+GGG | + | chr8.4:56642308-56642327 | MS.gene78666:CDS | 40.0% | |
| GCAATCAGGAAGGATACTTA+TGG | - | chr8.4:56643712-56643731 | None:intergenic | 40.0% | |
| GCAATTCCTGCAACTATTCT+GGG | + | chr8.4:56645503-56645522 | MS.gene78666:CDS | 40.0% | |
| GCAGACTGCACATTAATGTT+GGG | - | chr8.4:56644565-56644584 | None:intergenic | 40.0% | |
| GGTACTTTCCTACCATTTCA+AGG | - | chr8.4:56645668-56645687 | None:intergenic | 40.0% | |
| GTAGTGTTTGAAGAACTTGG+CGG | + | chr8.4:56646178-56646197 | MS.gene78666:CDS | 40.0% | |
| GTGAATTACTACATGGTTGG+TGG | + | chr8.4:56642830-56642849 | MS.gene78666:intron | 40.0% | |
| GTGAATTTGGTATCACCCAA+TGG | + | chr8.4:56645204-56645223 | MS.gene78666:CDS | 40.0% | |
| GTTCCTAATGGTGTAACAGT+AGG | - | chr8.4:56643444-56643463 | None:intergenic | 40.0% | |
| GTTGCTCGTTTCATTCAGAA+GGG | + | chr8.4:56642797-56642816 | MS.gene78666:CDS | 40.0% | |
| TAGTGTTTGAAGAACTTGGC+GGG | + | chr8.4:56646179-56646198 | MS.gene78666:CDS | 40.0% | |
| TATCTCCTAGATCTTCAGTC+AGG | + | chr8.4:56644239-56644258 | MS.gene78666:intron | 40.0% | |
| TATGTACCATAGATAGTCGC+TGG | - | chr8.4:56644192-56644211 | None:intergenic | 40.0% | |
| TCAGAATCATTTCTTCGAGG+AGG | + | chr8.4:56644532-56644551 | MS.gene78666:CDS | 40.0% | |
| TCCTTGCAAGTATCAACAGA+GGG | + | chr8.4:56645850-56645869 | MS.gene78666:intron | 40.0% | |
| TGCAAATATGGCTGTTGGAT+TGG | + | chr8.4:56642307-56642326 | MS.gene78666:CDS | 40.0% | |
| TGCAATTCCTGCAACTATTC+TGG | + | chr8.4:56645502-56645521 | MS.gene78666:CDS | 40.0% | |
| TGCAGACTGCACATTAATGT+TGG | - | chr8.4:56644566-56644585 | None:intergenic | 40.0% | |
| TGGCCGACATTATGAAACAT+GGG | + | chr8.4:56644978-56644997 | MS.gene78666:CDS | 40.0% | |
| TGGTCATGCATACCTAAACT+GGG | + | chr8.4:56642283-56642302 | MS.gene78666:CDS | 40.0% | |
| TGGTCCAATAATTCTCTCTC+AGG | + | chr8.4:56641914-56641933 | MS.gene78666:CDS | 40.0% | |
| TGGTGTCTCTTGTAACATTG+AGG | - | chr8.4:56644172-56644191 | None:intergenic | 40.0% | |
| TTCCACTCAGCGCATATATA+AGG | - | chr8.4:56641564-56641583 | None:intergenic | 40.0% | |
| TTGGCCGACATTATGAAACA+TGG | + | chr8.4:56644977-56644996 | MS.gene78666:CDS | 40.0% | |
| ! | AAGTTGGTCCTTGAAATGGT+AGG | + | chr8.4:56645657-56645676 | MS.gene78666:intron | 40.0% |
| ! | AGCTCTCTTTTTGTTCAGGA+TGG | - | chr8.4:56643306-56643325 | None:intergenic | 40.0% |
| ! | ATCTGTAGTGGAGAATTGGA+TGG | - | chr8.4:56642535-56642554 | None:intergenic | 40.0% |
| ! | CACTATGTTTAGGTTTGGTC+AGG | + | chr8.4:56643343-56643362 | MS.gene78666:intron | 40.0% |
| ! | GAAAAGCTGTTTCAGTCTCA+GGG | + | chr8.4:56641891-56641910 | MS.gene78666:CDS | 40.0% |
| ! | GAGGTTTGAAGTTTGTGGTA+AGG | - | chr8.4:56645353-56645372 | None:intergenic | 40.0% |
| ! | GTTGAACAGGTTGGACTAAA+AGG | + | chr8.4:56645174-56645193 | MS.gene78666:intron | 40.0% |
| ! | TGAAAAGCTGTTTCAGTCTC+AGG | + | chr8.4:56641890-56641909 | MS.gene78666:CDS | 40.0% |
| ! | TGAGCATGCTTTGGTTTCTT+CGG | + | chr8.4:56643416-56643435 | MS.gene78666:CDS | 40.0% |
| !! | AAATGAGTCCTGTCGATTCT+AGG | + | chr8.4:56644066-56644085 | MS.gene78666:CDS | 40.0% |
| !! | ACTCAAGTTGGTCCTTGAAA+TGG | + | chr8.4:56645653-56645672 | MS.gene78666:intron | 40.0% |
| !! | ATCCGTTCTGAAGCTTATTC+CGG | - | chr8.4:56641711-56641730 | None:intergenic | 40.0% |
| !! | CCTCAAGTTGAGTTGATTCT+TGG | + | chr8.4:56643229-56643248 | MS.gene78666:intron | 40.0% |
| !! | CTTTCTTTAAGACCACTCAG+GGG | - | chr8.4:56643265-56643284 | None:intergenic | 40.0% |
| !! | CTTTTAAAGGGTCGGCATTT+GGG | + | chr8.4:56644705-56644724 | MS.gene78666:intron | 40.0% |
| !! | TATGTGCTTGGTGATTTTCC+AGG | + | chr8.4:56643572-56643591 | MS.gene78666:intron | 40.0% |
| !! | TCTTTTAAAGGGTCGGCATT+TGG | + | chr8.4:56644704-56644723 | MS.gene78666:intron | 40.0% |
| !! | TGTCGATTCTAGGTTCTCAT+GGG | + | chr8.4:56644076-56644095 | MS.gene78666:CDS | 40.0% |
| !!! | GCTTATTTTAACACGCCTGA+GGG | + | chr8.4:56645376-56645395 | MS.gene78666:CDS | 40.0% |
| AACGAATATGGACCAGAGAG+CGG | + | chr8.4:56642245-56642264 | MS.gene78666:CDS | 45.0% | |
| ACCACAAACTTCAAACCTCC+AGG | + | chr8.4:56645354-56645373 | MS.gene78666:intron | 45.0% | |
| ACCATTAGGAACACTTCAGC+AGG | + | chr8.4:56643452-56643471 | MS.gene78666:CDS | 45.0% | |
| ACTGTGACAGCTGAAGCAAA+CGG | - | chr8.4:56642413-56642432 | None:intergenic | 45.0% | |
| AGAATGAAAGAGCTCACCAC+AGG | - | chr8.4:56642380-56642399 | None:intergenic | 45.0% | |
| AGGATACTTATGGACCATGG+AGG | - | chr8.4:56643702-56643721 | None:intergenic | 45.0% | |
| AGTTCAAGGATTACAGCTGC+TGG | + | chr8.4:56644134-56644153 | MS.gene78666:CDS | 45.0% | |
| ATAAGGTCCAATGCGGAGAT+TGG | - | chr8.4:56641547-56641566 | None:intergenic | 45.0% | |
| ATATGCGCTGAGTGGAACTT+TGG | + | chr8.4:56641567-56641586 | MS.gene78666:CDS | 45.0% | |
| ATCATTAGCTGAGACCCCAT+TGG | - | chr8.4:56645223-56645242 | None:intergenic | 45.0% | |
| ATGGGGTCTCAGCTAATGAT+TGG | + | chr8.4:56645223-56645242 | MS.gene78666:CDS | 45.0% | |
| ATTCACTAGCTACTCCAAGC+CGG | + | chr8.4:56645253-56645272 | MS.gene78666:CDS | 45.0% | |
| ATTGCCCGTTAGCAAACACA+TGG | - | chr8.4:56644600-56644619 | None:intergenic | 45.0% | |
| CAGGCGTGTTAAAATAAGCC+TGG | - | chr8.4:56645375-56645394 | None:intergenic | 45.0% | |
| CATGAGAACCTAGAATCGAC+AGG | - | chr8.4:56644077-56644096 | None:intergenic | 45.0% | |
| CCATATTTGCAGCCCAGTTT+AGG | - | chr8.4:56642298-56642317 | None:intergenic | 45.0% | |
| CCTAAACTGGGCTGCAAATA+TGG | + | chr8.4:56642295-56642314 | MS.gene78666:CDS | 45.0% | |
| CGGAAGTTATGCAATCAGGA+AGG | - | chr8.4:56643722-56643741 | None:intergenic | 45.0% | |
| CTGGTCATGCATACCTAAAC+TGG | + | chr8.4:56642282-56642301 | MS.gene78666:CDS | 45.0% | |
| CTTCAGCTGTCACAGTTAAG+GGG | + | chr8.4:56642417-56642436 | MS.gene78666:intron | 45.0% | |
| CTTTATGCCAATCTCCGCAT+TGG | + | chr8.4:56641537-56641556 | MS.gene78666:CDS | 45.0% | |
| GAATGTCCCAGAATAGTTGC+AGG | - | chr8.4:56645512-56645531 | None:intergenic | 45.0% | |
| GACCTTATATATGCGCTGAG+TGG | + | chr8.4:56641559-56641578 | MS.gene78666:CDS | 45.0% | |
| GACTGTAGCAAAGGTAAGAG+AGG | - | chr8.4:56642130-56642149 | None:intergenic | 45.0% | |
| GATGTTCATGAACCATCTCC+TGG | + | chr8.4:56641354-56641373 | MS.gene78666:CDS | 45.0% | |
| GCAAATGCTAGATCCTGAAC+TGG | - | chr8.4:56642776-56642795 | None:intergenic | 45.0% | |
| GCGTGTTAAAATAAGCCTGG+AGG | - | chr8.4:56645372-56645391 | None:intergenic | 45.0% | |
| GCTCCAGCATGTAGATTAAC+TGG | - | chr8.4:56644764-56644783 | None:intergenic | 45.0% | |
| GCTTCAGCTGTCACAGTTAA+GGG | + | chr8.4:56642416-56642435 | MS.gene78666:intron | 45.0% | |
| GGAAGGATACTTATGGACCA+TGG | - | chr8.4:56643705-56643724 | None:intergenic | 45.0% | |
| GGCACATACTTCAACCAAAC+AGG | - | chr8.4:56641689-56641708 | None:intergenic | 45.0% | |
| GGTATCATGTTCCAAGGTCA+TGG | + | chr8.4:56646131-56646150 | MS.gene78666:intron | 45.0% | |
| GGTATTACATTGCCAGGAGA+TGG | - | chr8.4:56641369-56641388 | None:intergenic | 45.0% | |
| GGTGAGCTCTTTCATTCTCT+TGG | + | chr8.4:56642382-56642401 | MS.gene78666:intron | 45.0% | |
| GGTGTAGAGGAATTCCTGTT+TGG | + | chr8.4:56641672-56641691 | MS.gene78666:intron | 45.0% | |
| GTATTCTCTGCAGGAACTAC+AGG | + | chr8.4:56643600-56643619 | MS.gene78666:CDS | 45.0% | |
| GTCCACATGCTAGGCTTATA+TGG | - | chr8.4:56642604-56642623 | None:intergenic | 45.0% | |
| GTCCTTGCAAGTATCAACAG+AGG | + | chr8.4:56645849-56645868 | MS.gene78666:intron | 45.0% | |
| GTTTGGTTGAAGTATGTGCC+CGG | + | chr8.4:56641689-56641708 | MS.gene78666:CDS | 45.0% | |
| TACCATGGAGGAACCAACTT+TGG | + | chr8.4:56642997-56643016 | MS.gene78666:CDS | 45.0% | |
| TATGCGCTGAGTGGAACTTT+GGG | + | chr8.4:56641568-56641587 | MS.gene78666:CDS | 45.0% | |
| TCATTAGCTGAGACCCCATT+GGG | - | chr8.4:56645222-56645241 | None:intergenic | 45.0% | |
| TCCCTCTGTTGATACTTGCA+AGG | - | chr8.4:56645854-56645873 | None:intergenic | 45.0% | |
| TGATACAATAGACACCGCCT+AGG | - | chr8.4:56644324-56644343 | None:intergenic | 45.0% | |
| TGCTTCAGCTGTCACAGTTA+AGG | + | chr8.4:56642415-56642434 | MS.gene78666:intron | 45.0% | |
| TGGGGTCTCAGCTAATGATT+GGG | + | chr8.4:56645224-56645243 | MS.gene78666:CDS | 45.0% | |
| TTCAGCTGTCACAGTTAAGG+GGG | + | chr8.4:56642418-56642437 | MS.gene78666:intron | 45.0% | |
| TTTCCTTGCACATCACCCAA+GGG | - | chr8.4:56642343-56642362 | None:intergenic | 45.0% | |
| ! | ACAGGTTGGACTAAAAGGAG+AGG | + | chr8.4:56645179-56645198 | MS.gene78666:intron | 45.0% |
| ! | ACCTGCTGAAGTGTTCCTAA+TGG | - | chr8.4:56643456-56643475 | None:intergenic | 45.0% |
| ! | CAAGGTGTCTGACAAGCAAA+TGG | - | chr8.4:56644897-56644916 | None:intergenic | 45.0% |
| ! | GACCTAGGAAGTATGGGTAA+GGG | + | chr8.4:56645418-56645437 | MS.gene78666:CDS | 45.0% |
| ! | GCTTTGGACCTAGGAAGTAT+GGG | + | chr8.4:56645412-56645431 | MS.gene78666:CDS | 45.0% |
| ! | TCTAAAGTCTGCTGCTACTG+TGG | + | chr8.4:56643650-56643669 | MS.gene78666:CDS | 45.0% |
| ! | TCTGTTTGGAATGATGTCGC+AGG | + | chr8.4:56646110-56646129 | MS.gene78666:intron | 45.0% |
| ! | TTTTCCTTGCACATCACCCA+AGG | - | chr8.4:56642344-56642363 | None:intergenic | 45.0% |
| !! | AACGGATAACGGACCTTTCA+AGG | + | chr8.4:56641724-56641743 | MS.gene78666:CDS | 45.0% |
| !! | CTGTCGATTCTAGGTTCTCA+TGG | + | chr8.4:56644075-56644094 | MS.gene78666:CDS | 45.0% |
| !! | TCCGTTCTGAAGCTTATTCC+GGG | - | chr8.4:56641710-56641729 | None:intergenic | 45.0% |
| !!! | GGCTTATTTTAACACGCCTG+AGG | + | chr8.4:56645375-56645394 | MS.gene78666:intron | 45.0% |
| !!! | AAAATACATTTTTTTTTAAA+AGG | - | chr8.4:56641409-56641428 | None:intergenic | 5.0% |
| !!! | AAATACATTTTTTTTTAAAA+GGG | - | chr8.4:56641408-56641427 | None:intergenic | 5.0% |
| !!! | GATATATATATATATTTTTT+GGG | + | chr8.4:56641815-56641834 | MS.gene78666:intron | 5.0% |
| !!! | TGATATATATATATATTTTT+TGG | + | chr8.4:56641814-56641833 | MS.gene78666:intron | 5.0% |
| AAAGAGCTCACCACAGGATC+CGG | - | chr8.4:56642374-56642393 | None:intergenic | 50.0% | |
| AACTTTGGACGATCAGCTGG+TGG | + | chr8.4:56643012-56643031 | MS.gene78666:CDS | 50.0% | |
| AAGAACTTGGCGGGAATCCT+TGG | + | chr8.4:56646188-56646207 | MS.gene78666:CDS | 50.0% | |
| AATTCACCAGCGACCAGTTC+AGG | + | chr8.4:56642760-56642779 | MS.gene78666:CDS | 50.0% | |
| ACCAACTTTGGACGATCAGC+TGG | + | chr8.4:56643009-56643028 | MS.gene78666:CDS | 50.0% | |
| ACCAGCTGATCGTCCAAAGT+TGG | - | chr8.4:56643013-56643032 | None:intergenic | 50.0% | |
| ACGAATATGGACCAGAGAGC+GGG | + | chr8.4:56642246-56642265 | MS.gene78666:CDS | 50.0% | |
| ATTGGGAACAGGAGTCCCTT+GGG | + | chr8.4:56642325-56642344 | MS.gene78666:CDS | 50.0% | |
| CAAGCGATGTGAGCATGCTT+TGG | + | chr8.4:56643407-56643426 | MS.gene78666:CDS | 50.0% | |
| CAGGCTCATGTATTCTCTGC+AGG | + | chr8.4:56643591-56643610 | MS.gene78666:intron | 50.0% | |
| CCCGTTAGCAAACACATGGA+CGG | - | chr8.4:56644596-56644615 | None:intergenic | 50.0% | |
| CTGCAGAGAATACATGAGCC+TGG | - | chr8.4:56643593-56643612 | None:intergenic | 50.0% | |
| CTGTGACAGCTGAAGCAAAC+GGG | - | chr8.4:56642412-56642431 | None:intergenic | 50.0% | |
| CTTCCTAGGTCCAAAGCCAA+TGG | - | chr8.4:56645409-56645428 | None:intergenic | 50.0% | |
| GAACTGGTCGCTGGTGAATT+GGG | - | chr8.4:56642760-56642779 | None:intergenic | 50.0% | |
| GAGACACCAGCGACTATCTA+TGG | + | chr8.4:56644183-56644202 | MS.gene78666:CDS | 50.0% | |
| GATGGCCTGACTGAAGATCT+AGG | - | chr8.4:56644247-56644266 | None:intergenic | 50.0% | |
| GCCCGGAATAAGCTTCAGAA+CGG | + | chr8.4:56641706-56641725 | MS.gene78666:CDS | 50.0% | |
| GCTCGTTTCATTCAGAAGGG+TGG | + | chr8.4:56642800-56642819 | MS.gene78666:CDS | 50.0% | |
| GGATCATTTCAACCCCTGAG+TGG | + | chr8.4:56643250-56643269 | MS.gene78666:intron | 50.0% | |
| GGGCCAGTTAATCTACATGC+TGG | + | chr8.4:56644758-56644777 | MS.gene78666:CDS | 50.0% | |
| GTATGGGTAAGGGCCAAGTA+TGG | + | chr8.4:56645428-56645447 | MS.gene78666:CDS | 50.0% | |
| GTCGCAGGTATCATGTTCCA+AGG | + | chr8.4:56646125-56646144 | MS.gene78666:intron | 50.0% | |
| GTGCAAGGAAAATGATGCCC+CGG | + | chr8.4:56642352-56642371 | MS.gene78666:CDS | 50.0% | |
| GTGGACAACCCACTCAAAGA+TGG | + | chr8.4:56645557-56645576 | MS.gene78666:CDS | 50.0% | |
| TCAAGACCATGGAGCACAAC+TGG | - | chr8.4:56645021-56645040 | None:intergenic | 50.0% | |
| TGAACTGGTCGCTGGTGAAT+TGG | - | chr8.4:56642761-56642780 | None:intergenic | 50.0% | |
| TGGGCTGCAAATATGGCTGT+TGG | + | chr8.4:56642302-56642321 | MS.gene78666:CDS | 50.0% | |
| TGGGTTGTCCACAACCAAGT+TGG | - | chr8.4:56645549-56645568 | None:intergenic | 50.0% | |
| TGGGTTTAGGCTGCAATGCA+AGG | + | chr8.4:56641834-56641853 | MS.gene78666:intron | 50.0% | |
| ! | AAGCTGTTTCAGTCTCAGGG+TGG | + | chr8.4:56641894-56641913 | MS.gene78666:CDS | 50.0% |
| ! | AGACCTGCAAAGTGCCAACT+TGG | + | chr8.4:56645532-56645551 | MS.gene78666:CDS | 50.0% |
| ! | ATGGCTGTTGGATTGGGAAC+AGG | + | chr8.4:56642314-56642333 | MS.gene78666:CDS | 50.0% |
| ! | CAACCAAGTTGGCACTTTGC+AGG | - | chr8.4:56645538-56645557 | None:intergenic | 50.0% |
| ! | CCGTCCATGTGTTTGCTAAC+GGG | + | chr8.4:56644593-56644612 | MS.gene78666:CDS | 50.0% |
| ! | GCAAAGTGCCAACTTGGTTG+TGG | + | chr8.4:56645538-56645557 | MS.gene78666:CDS | 50.0% |
| ! | GCCGTCCATGTGTTTGCTAA+CGG | + | chr8.4:56644592-56644611 | MS.gene78666:CDS | 50.0% |
| ! | GCCTGGAGGTTTGAAGTTTG+TGG | - | chr8.4:56645358-56645377 | None:intergenic | 50.0% |
| ! | GGACCTAGGAAGTATGGGTA+AGG | + | chr8.4:56645417-56645436 | MS.gene78666:CDS | 50.0% |
| ! | GTCCAAAGTTGGTTCCTCCA+TGG | - | chr8.4:56643002-56643021 | None:intergenic | 50.0% |
| !! | GAACCATTGGCTTTGGACCT+AGG | + | chr8.4:56645403-56645422 | MS.gene78666:CDS | 50.0% |
| !! | GGCTTTGGACCTAGGAAGTA+TGG | + | chr8.4:56645411-56645430 | MS.gene78666:CDS | 50.0% |
| !! | GTTGGCTTTAGCCATGACCT+TGG | - | chr8.4:56646145-56646164 | None:intergenic | 50.0% |
| AAATGATGCCCCGGATCCTG+TGG | + | chr8.4:56642361-56642380 | MS.gene78666:CDS | 55.0% | |
| AAGAGCTCACCACAGGATCC+GGG | - | chr8.4:56642373-56642392 | None:intergenic | 55.0% | |
| ACTGGTCCAGTTGTGCTCCA+TGG | + | chr8.4:56645012-56645031 | MS.gene78666:CDS | 55.0% | |
| AGTCCCTTGGGTGATGTGCA+AGG | + | chr8.4:56642337-56642356 | MS.gene78666:CDS | 55.0% | |
| ATGTGGACGGAGTCTTGGAG+TGG | + | chr8.4:56642616-56642635 | MS.gene78666:CDS | 55.0% | |
| CAAGACTCCGTCCACATGCT+AGG | - | chr8.4:56642613-56642632 | None:intergenic | 55.0% | |
| CGAATATGGACCAGAGAGCG+GGG | + | chr8.4:56642247-56642266 | MS.gene78666:CDS | 55.0% | |
| CTAGATCCTGAACTGGTCGC+TGG | - | chr8.4:56642769-56642788 | None:intergenic | 55.0% | |
| CTAGCATGTGGACGGAGTCT+TGG | + | chr8.4:56642611-56642630 | MS.gene78666:CDS | 55.0% | |
| GATTGGGAACAGGAGTCCCT+TGG | + | chr8.4:56642324-56642343 | MS.gene78666:CDS | 55.0% | |
| GCTCTTCTCAGCGTGACTGT+CGG | + | chr8.4:56644794-56644813 | MS.gene78666:CDS | 55.0% | |
| GGCCCTTACCCATACTTCCT+AGG | - | chr8.4:56645423-56645442 | None:intergenic | 55.0% | |
| GGTGGGAACTCAAACGTCAG+TGG | + | chr8.4:56644040-56644059 | MS.gene78666:intron | 55.0% | |
| TCGGTCCATGGTCAAGACCA+TGG | - | chr8.4:56645032-56645051 | None:intergenic | 55.0% | |
| ! | GGCACTATGACTTGCCTCCA+TGG | + | chr8.4:56643685-56643704 | MS.gene78666:CDS | 55.0% |
| ! | GTGCTCCATGGTCTTGACCA+TGG | + | chr8.4:56645024-56645043 | MS.gene78666:CDS | 55.0% |
| ! | TGGTCTTGACCATGGACCGA+AGG | + | chr8.4:56645032-56645051 | MS.gene78666:CDS | 55.0% |
| !! | GGGCAACGAACCATTGGCTT+TGG | + | chr8.4:56645396-56645415 | MS.gene78666:CDS | 55.0% |
| ACATGGGAGACGGGGATCAC+TGG | + | chr8.4:56644994-56645013 | MS.gene78666:CDS | 60.0% | |
| AGAGCTCACCACAGGATCCG+GGG | - | chr8.4:56642372-56642391 | None:intergenic | 60.0% | |
| CAGCGTGACTGTCGGATTGC+CGG | + | chr8.4:56644802-56644821 | MS.gene78666:CDS | 60.0% | |
| GCCAATGGTTCGTTGCCCTC+AGG | - | chr8.4:56645394-56645413 | None:intergenic | 60.0% | |
| GCCTGAGGGCAACGAACCAT+TGG | + | chr8.4:56645390-56645409 | MS.gene78666:CDS | 60.0% | |
| GCGACAGATCCTTCGGTCCA+TGG | - | chr8.4:56645044-56645063 | None:intergenic | 60.0% | |
| ! | AAGGGTCGGCATTTGGGACG+AGG | + | chr8.4:56644711-56644730 | MS.gene78666:intron | 60.0% |
| GGACCAGAGAGCGGGGCAAT+GGG | + | chr8.4:56642254-56642273 | MS.gene78666:CDS | 65.0% | |
| GGACGGAGTCTTGGAGTGGC+TGG | + | chr8.4:56642620-56642639 | MS.gene78666:CDS | 65.0% | |
| TGGACCAGAGAGCGGGGCAA+TGG | + | chr8.4:56642253-56642272 | MS.gene78666:CDS | 65.0% | |
| AGCGGGGCAATGGGAGCTGC+TGG | + | chr8.4:56642263-56642282 | MS.gene78666:CDS | 70.0% | |
| GCTCCCATTGCCCCGCTCTC+TGG | - | chr8.4:56642260-56642279 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 56641285 | 56646258 | 56641285 | ID=MS.gene78666 |
| chr8.4 | mRNA | 56641285 | 56646258 | 56641285 | ID=MS.gene78666.t1;Parent=MS.gene78666 |
| chr8.4 | exon | 56641285 | 56641380 | 56641285 | ID=MS.gene78666.t1.exon1;Parent=MS.gene78666.t1 |
| chr8.4 | CDS | 56641285 | 56641380 | 56641285 | ID=cds.MS.gene78666.t1;Parent=MS.gene78666.t1 |
| chr8.4 | exon | 56641477 | 56641589 | 56641477 | ID=MS.gene78666.t1.exon2;Parent=MS.gene78666.t1 |
| chr8.4 | CDS | 56641477 | 56641589 | 56641477 | ID=cds.MS.gene78666.t1;Parent=MS.gene78666.t1 |
| chr8.4 | exon | 56641679 | 56641745 | 56641679 | ID=MS.gene78666.t1.exon3;Parent=MS.gene78666.t1 |
| chr8.4 | CDS | 56641679 | 56641745 | 56641679 | ID=cds.MS.gene78666.t1;Parent=MS.gene78666.t1 |
| chr8.4 | exon | 56641843 | 56641935 | 56641843 | ID=MS.gene78666.t1.exon4;Parent=MS.gene78666.t1 |
| chr8.4 | CDS | 56641843 | 56641935 | 56641843 | ID=cds.MS.gene78666.t1;Parent=MS.gene78666.t1 |
| chr8.4 | exon | 56642239 | 56642382 | 56642239 | ID=MS.gene78666.t1.exon5;Parent=MS.gene78666.t1 |
| chr8.4 | CDS | 56642239 | 56642382 | 56642239 | ID=cds.MS.gene78666.t1;Parent=MS.gene78666.t1 |
| chr8.4 | exon | 56642553 | 56642641 | 56642553 | ID=MS.gene78666.t1.exon6;Parent=MS.gene78666.t1 |
| chr8.4 | CDS | 56642553 | 56642641 | 56642553 | ID=cds.MS.gene78666.t1;Parent=MS.gene78666.t1 |
| chr8.4 | exon | 56642739 | 56642844 | 56642739 | ID=MS.gene78666.t1.exon7;Parent=MS.gene78666.t1 |
| chr8.4 | CDS | 56642739 | 56642844 | 56642739 | ID=cds.MS.gene78666.t1;Parent=MS.gene78666.t1 |
| chr8.4 | exon | 56642997 | 56643084 | 56642997 | ID=MS.gene78666.t1.exon8;Parent=MS.gene78666.t1 |
| chr8.4 | CDS | 56642997 | 56643084 | 56642997 | ID=cds.MS.gene78666.t1;Parent=MS.gene78666.t1 |
| chr8.4 | exon | 56643355 | 56643473 | 56643355 | ID=MS.gene78666.t1.exon9;Parent=MS.gene78666.t1 |
| chr8.4 | CDS | 56643355 | 56643473 | 56643355 | ID=cds.MS.gene78666.t1;Parent=MS.gene78666.t1 |
| chr8.4 | exon | 56643594 | 56643758 | 56643594 | ID=MS.gene78666.t1.exon10;Parent=MS.gene78666.t1 |
| chr8.4 | CDS | 56643594 | 56643758 | 56643594 | ID=cds.MS.gene78666.t1;Parent=MS.gene78666.t1 |
| chr8.4 | exon | 56644041 | 56644216 | 56644041 | ID=MS.gene78666.t1.exon11;Parent=MS.gene78666.t1 |
| chr8.4 | CDS | 56644041 | 56644216 | 56644041 | ID=cds.MS.gene78666.t1;Parent=MS.gene78666.t1 |
| chr8.4 | exon | 56644516 | 56644625 | 56644516 | ID=MS.gene78666.t1.exon12;Parent=MS.gene78666.t1 |
| chr8.4 | CDS | 56644516 | 56644625 | 56644516 | ID=cds.MS.gene78666.t1;Parent=MS.gene78666.t1 |
| chr8.4 | exon | 56644714 | 56644823 | 56644714 | ID=MS.gene78666.t1.exon13;Parent=MS.gene78666.t1 |
| chr8.4 | CDS | 56644714 | 56644823 | 56644714 | ID=cds.MS.gene78666.t1;Parent=MS.gene78666.t1 |
| chr8.4 | exon | 56644973 | 56645083 | 56644973 | ID=MS.gene78666.t1.exon14;Parent=MS.gene78666.t1 |
| chr8.4 | CDS | 56644973 | 56645083 | 56644973 | ID=cds.MS.gene78666.t1;Parent=MS.gene78666.t1 |
| chr8.4 | exon | 56645183 | 56645296 | 56645183 | ID=MS.gene78666.t1.exon15;Parent=MS.gene78666.t1 |
| chr8.4 | CDS | 56645183 | 56645296 | 56645183 | ID=cds.MS.gene78666.t1;Parent=MS.gene78666.t1 |
| chr8.4 | exon | 56645376 | 56645578 | 56645376 | ID=MS.gene78666.t1.exon16;Parent=MS.gene78666.t1 |
| chr8.4 | CDS | 56645376 | 56645578 | 56645376 | ID=cds.MS.gene78666.t1;Parent=MS.gene78666.t1 |
| chr8.4 | exon | 56646132 | 56646258 | 56646132 | ID=MS.gene78666.t1.exon17;Parent=MS.gene78666.t1 |
| chr8.4 | CDS | 56646132 | 56646258 | 56646132 | ID=cds.MS.gene78666.t1;Parent=MS.gene78666.t1 |
| Gene Sequence |
| Protein sequence |
