AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene010574

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene010574.t1 MTR_5g021190 98.858 788 9 0 22 809 56 843 0.0 1636
MS.gene010574.t1 MTR_8g016230 64.586 785 273 4 22 803 55 837 0.0 1092
MS.gene010574.t1 MTR_2g100110 65.223 785 268 4 22 803 58 840 0.0 1087
MS.gene010574.t1 MTR_1g023120 72.957 673 180 2 22 693 59 730 0.0 1058
MS.gene010574.t1 MTR_1g023120 72.957 673 180 2 22 693 1 672 0.0 1056
MS.gene010574.t1 MTR_3g112370 72.041 676 187 2 22 696 58 732 0.0 1053
MS.gene010574.t1 MTR_1g018200 62.798 672 245 5 22 690 61 730 0.0 899
MS.gene010574.t1 MTR_2g094020 54.703 808 329 13 22 809 52 842 0.0 878
MS.gene010574.t1 MTR_2g039120 60.954 671 258 4 22 690 58 726 0.0 878
MS.gene010574.t1 MTR_2g094060 55.444 799 323 12 22 804 52 833 0.0 876
MS.gene010574.t1 MTR_4g059680 54.637 798 331 13 22 803 56 838 0.0 849
MS.gene010574.t1 MTR_2g094060 55.570 763 307 11 22 768 52 798 0.0 842
MS.gene010574.t1 MTR_2g039120 60.911 637 245 4 22 656 58 692 0.0 835
MS.gene010574.t1 MTR_2g100110 68.421 532 165 2 22 551 58 588 0.0 788
MS.gene010574.t1 MTR_8g085210 48.736 831 374 12 22 809 80 901 0.0 782
MS.gene010574.t1 MTR_2g094060 56.744 645 255 8 22 654 52 684 0.0 743
MS.gene010574.t1 MTR_2g039120 60.457 569 222 3 22 589 58 624 0.0 739
MS.gene010574.t1 MTR_3g096900 53.166 679 305 4 22 689 57 733 0.0 736
MS.gene010574.t1 MTR_2g042610 46.558 799 385 11 22 804 57 829 0.0 718
MS.gene010574.t1 MTR_2g039120 61.394 531 203 2 22 551 58 587 0.0 701
MS.gene010574.t1 MTR_5g025830 45.885 802 386 13 22 803 58 831 0.0 699
MS.gene010574.t1 MTR_3g096900 52.941 646 291 4 22 656 57 700 0.0 693
MS.gene010574.t1 MTR_5g024080 45.592 794 393 13 22 803 40 806 0.0 691
MS.gene010574.t1 MTR_3g117840 42.803 792 413 13 23 804 66 827 0.0 671
MS.gene010574.t1 MTR_4g073290 43.270 795 412 14 22 804 58 825 0.0 667
MS.gene010574.t1 MTR_3g005570 43.814 776 385 11 22 785 56 792 0.0 647
MS.gene010574.t1 MTR_3g096910 48.175 685 320 8 22 700 57 712 0.0 637
MS.gene010574.t1 MTR_3g096900 53.322 572 258 3 22 586 57 626 0.0 616
MS.gene010574.t1 MTR_3g088520 48.892 677 289 16 22 686 1 632 0.0 605
MS.gene010574.t1 MTR_3g088520 48.892 677 289 16 22 686 56 687 0.0 605
MS.gene010574.t1 MTR_3g096910 45.178 591 289 8 116 700 1 562 2.68e-168 499
MS.gene010574.t1 MTR_4g126330 41.748 412 140 9 247 656 131 444 2.60e-88 287
MS.gene010574.t1 MTR_4g126330 72.826 92 25 0 47 138 25 116 2.07e-40 155
MS.gene010574.t1 MTR_5g022590 40.134 299 139 8 22 317 22 283 2.95e-62 216
MS.gene010574.t1 MTR_5g022590 33.333 114 73 2 657 767 305 418 1.01e-11 68.2
MS.gene010574.t1 MTR_3g005610 35.540 287 152 6 395 678 24 280 1.34e-40 152
MS.gene010574.t1 MTR_2g059440 33.798 287 156 6 395 678 24 279 2.92e-37 142
MS.gene010574.t1 MTR_2g100000 31.935 310 168 9 23 300 85 383 4.64e-31 130
MS.gene010574.t1 MTR_2g059430 32.197 264 117 5 415 678 10 211 5.17e-28 113
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene010574.t1 AT4G36360 79.490 785 160 1 22 805 63 847 0.0 1373
MS.gene010574.t1 AT4G36360 79.363 785 160 2 22 805 63 846 0.0 1367
MS.gene010574.t1 AT3G13750 65.903 786 263 4 22 804 64 847 0.0 1092
MS.gene010574.t1 AT1G45130 71.429 672 191 1 22 692 61 732 0.0 1039
MS.gene010574.t1 AT1G45130 70.781 640 186 1 54 692 14 653 0.0 981
MS.gene010574.t1 AT2G28470 56.571 799 323 14 22 804 62 852 0.0 894
MS.gene010574.t1 AT2G28470 56.571 799 323 14 22 804 62 852 0.0 894
MS.gene010574.t1 AT2G28470 56.571 799 323 14 22 804 56 846 0.0 892
MS.gene010574.t1 AT2G28470 56.571 799 323 14 22 804 56 846 0.0 892
MS.gene010574.t1 AT3G52840 62.295 671 247 6 22 690 113 779 0.0 888
MS.gene010574.t1 AT3G52840 62.202 672 248 6 22 691 59 726 0.0 887
MS.gene010574.t1 AT4G26140 61.276 674 252 8 22 691 59 727 0.0 873
MS.gene010574.t1 AT5G56870 61.699 671 250 7 22 690 59 724 0.0 863
MS.gene010574.t1 AT4G26140 59.227 699 251 9 22 691 59 752 0.0 860
MS.gene010574.t1 AT4G26140 59.187 664 237 9 22 656 59 717 0.0 816
MS.gene010574.t1 AT2G32810 49.756 818 372 13 22 806 68 879 0.0 796
MS.gene010574.t1 AT2G28470 58.359 646 249 10 22 654 62 700 0.0 761
MS.gene010574.t1 AT2G32810 50.128 780 350 13 22 768 68 841 0.0 759
MS.gene010574.t1 AT4G26140 61.754 570 210 7 22 588 59 623 0.0 744
MS.gene010574.t1 AT5G63810 53.959 682 303 5 22 694 62 741 0.0 743
MS.gene010574.t1 AT4G26140 61.444 568 213 6 22 588 59 621 0.0 743
MS.gene010574.t1 AT4G26140 61.444 568 213 6 22 588 59 621 0.0 743
MS.gene010574.t1 AT1G77410 48.000 800 360 13 22 804 55 815 0.0 719
MS.gene010574.t1 AT5G20710 47.111 796 380 13 22 803 58 826 0.0 717
MS.gene010574.t1 AT1G77410 47.810 799 368 14 22 804 55 820 0.0 713
MS.gene010574.t1 AT1G31740 46.222 794 349 15 22 803 52 779 0.0 684
MS.gene010574.t1 AT4G26140 63.434 495 174 6 22 513 59 549 0.0 662
MS.gene010574.t1 AT4G26140 60.577 520 173 7 22 513 59 574 0.0 649
MS.gene010574.t1 AT4G26140 60.577 520 173 7 22 513 59 574 0.0 649
MS.gene010574.t1 AT2G16730 41.542 804 425 17 22 809 74 848 0.0 646
MS.gene010574.t1 AT5G63800 48.392 684 321 8 22 701 62 717 0.0 634
MS.gene010574.t1 AT4G35010 40.955 796 431 15 22 804 71 840 0.0 629
MS.gene010574.t1 AT1G77410 47.123 730 330 13 92 804 19 709 0.0 627
MS.gene010574.t1 AT1G77410 47.123 730 330 13 92 804 19 709 0.0 627
MS.gene010574.t1 AT4G38590 41.154 797 424 17 22 803 1 767 0.0 626
MS.gene010574.t1 AT4G38590 40.500 800 427 18 19 803 66 831 0.0 613
MS.gene010574.t1 AT5G20710 43.673 648 324 13 170 803 1 621 1.07e-177 525
MS.gene010574.t1 AT2G04060 36.512 367 159 7 257 623 23 315 6.48e-60 211
MS.gene010574.t1 AT1G72990 33.436 326 172 11 10 302 19 332 1.13e-39 156
MS.gene010574.t1 AT1G72990 34.505 313 160 11 23 302 39 339 1.16e-38 153
MS.gene010574.t1 AT1G72990 34.505 313 160 11 23 302 94 394 1.60e-38 153
MS.gene010574.t1 AT1G72990 34.505 313 160 11 23 302 94 394 1.60e-38 153
MS.gene010574.t1 AT2G04062 35.948 153 57 3 22 164 37 158 1.85e-20 89.4
MS.gene010574.t1 AT3G53080 37.349 83 50 2 722 803 71 152 1.68e-13 69.3
MS.gene010574.t1 AT3G53075 34.118 85 55 1 722 806 82 165 2.93e-13 68.9
MS.gene010574.t1 AT3G53075 34.118 85 55 1 722 806 112 195 4.13e-13 69.3

Find 213 sgRNAs with CRISPR-Local

Find 370 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTTGTGCTGAATGGAATTT+TGG 0.144864 5.1:-12437881 MS.gene010574:CDS
TCCAAAGCTTGCAAATTTAA+TGG 0.170398 5.1:+12433987 None:intergenic
AACTAATCAGCTCCTTTAAT+TGG 0.192936 5.1:+12433569 None:intergenic
TGTAGGCTTGTAGGGTTTAT+TGG 0.193151 5.1:+12436800 None:intergenic
TTCATCAATGGTCGACTTTC+CGG 0.199118 5.1:-12435209 MS.gene010574:intron
TATCATGGAGGAACAAATTT+TGG 0.222886 5.1:-12436473 MS.gene010574:CDS
TCCATTAAATTTGCAAGCTT+TGG 0.229371 5.1:-12433988 MS.gene010574:CDS
CAAAAGACCTGTTCAGGATT+TGG 0.234447 5.1:-12436638 MS.gene010574:CDS
AAATATTGACAGGTTTAATT+AGG 0.244908 5.1:-12436193 MS.gene010574:intron
AAAGGTCAAATATGGATTAA+TGG 0.245950 5.1:-12434455 MS.gene010574:CDS
ACTGTATCAAACAGTAATTT+TGG 0.253526 5.1:-12433657 MS.gene010574:CDS
TTACAATGCAAGTGAACTTT+TGG 0.264877 5.1:+12434030 None:intergenic
CATACATCTGGGGTGCTTCT+AGG 0.279927 5.1:+12438289 None:intergenic
CATCACTCTTGCAGAAGATT+TGG 0.288417 5.1:+12435920 None:intergenic
CTCCGACTATTACCAATTAA+AGG 0.292713 5.1:-12433581 None:intergenic
TGTCCACATTGTAGGCTTGT+AGG 0.299295 5.1:+12436791 None:intergenic
TATGAGCTGGGCTGCGAAAA+TGG 0.313804 5.1:-12437041 MS.gene010574:CDS
TCATAGCTGGTAGTGATAAA+AGG 0.315613 5.1:+12436434 None:intergenic
GTAGGCTTGTAGGGTTTATT+GGG 0.318414 5.1:+12436801 None:intergenic
TAATTGAAACCTATGTGTTT+TGG 0.325172 5.1:-12438120 MS.gene010574:CDS
AGTCTCATTGTTCAGTCAAC+TGG 0.328435 5.1:-12435248 MS.gene010574:CDS
TTAATTAGGCAACCAAAGTA+TGG 0.330593 5.1:-12436179 MS.gene010574:CDS
GGGATACAAGTGATTATCTT+TGG 0.333315 5.1:-12435504 MS.gene010574:CDS
GTATGGGTAAAGGTCAAATA+TGG 0.336417 5.1:-12434463 MS.gene010574:CDS
GATAACCGCTTCAATACATT+TGG 0.339791 5.1:+12433621 None:intergenic
GTTTGGCTCAAGTATGTTCC+TGG 0.341896 5.1:-12437751 MS.gene010574:CDS
AGAGCCGTTGGCATTGGATA+TGG 0.353181 5.1:-12434489 MS.gene010574:CDS
AAGGTCAAATATGGATTAAT+GGG 0.354570 5.1:-12434454 MS.gene010574:CDS
CAGGACTATATGCTCATCTA+AGG 0.363152 5.1:-12437916 MS.gene010574:CDS
CAAGCCTCTGTCCACATTGT+AGG 0.368026 5.1:+12436783 None:intergenic
CAAAGCTAAAGAAGGAGGTT+TGG 0.371203 5.1:-12438146 MS.gene010574:CDS
ACAAGACAATGAACCTTTCA+AGG 0.379762 5.1:-12437716 MS.gene010574:intron
TGTTATCCATGGACTTGATA+AGG 0.380836 5.1:-12434853 MS.gene010574:CDS
TTTCCTAATGAGGTAACAAC+TGG 0.386087 5.1:+12436095 None:intergenic
AATTGGCACATTGATAGTTA+TGG 0.387493 5.1:-12434075 MS.gene010574:CDS
CATTGATAGTTATGGAAAAT+CGG 0.389751 5.1:-12434067 MS.gene010574:CDS
ATTAAGAAGGAACATACATC+TGG 0.392397 5.1:+12438277 None:intergenic
GGTACCCTGTACCGCGATCT+TGG 0.392705 5.1:-12434227 MS.gene010574:CDS
TGCGAAAATGGCTGTTGAAA+TGG 0.393313 5.1:-12437029 MS.gene010574:CDS
GCCAACGGCTCTTCTCCTTC+AGG 0.398081 5.1:+12434500 None:intergenic
CACGCCTGAGAGAGGATTAT+AGG 0.399465 5.1:+12437276 None:intergenic
GTCCACATTGTAGGCTTGTA+GGG 0.404490 5.1:+12436792 None:intergenic
GACCCAGTTGTTACCTCATT+AGG 0.404591 5.1:-12436098 MS.gene010574:CDS
TGGACTTGTCTTGGCAGAAA+TGG 0.405615 5.1:-12434824 MS.gene010574:CDS
TGAAAGTAAAGTACATTTCC+AGG 0.406491 5.1:+12438079 None:intergenic
GTAGCCCGATTTATACAAAA+AGG 0.406520 5.1:-12436607 MS.gene010574:CDS
ATCATCCTAATCTTAAGAAT+TGG 0.406667 5.1:-12434092 MS.gene010574:CDS
AATAACTGCTTCTGGTCTCT+TGG 0.406686 5.1:-12435545 MS.gene010574:CDS
TATGTATACACCACAGAGTC+TGG 0.408684 5.1:-12435975 MS.gene010574:CDS
AATGTTCATGAACCTTCTCC+TGG 0.408807 5.1:-12438097 MS.gene010574:CDS
GAGAACCTCTCACTATTTGT+AGG 0.413141 5.1:+12435613 None:intergenic
AGAATGCTTACCACTGGATC+TGG 0.416491 5.1:+12436965 None:intergenic
GCAACTACAATAACTGCTTC+TGG 0.416767 5.1:-12435553 MS.gene010574:CDS
TGCAAATTTAATGGAAGAGA+TGG 0.418486 5.1:+12433996 None:intergenic
ATGGCTGTTGAAATGGGAAC+TGG 0.419005 5.1:-12437022 MS.gene010574:CDS
AATTCACAAAAGACCTGTTC+AGG 0.419782 5.1:-12436644 MS.gene010574:CDS
GTTATCCATGGACTTGATAA+GGG 0.420565 5.1:-12434852 MS.gene010574:CDS
ACGCCTGAGAGAGGATTATA+GGG 0.422367 5.1:+12437277 None:intergenic
AAAACAGCATTTCTACAATC+CGG 0.424631 5.1:+12435849 None:intergenic
GGAACATACTTGAGCCAAAC+AGG 0.425899 5.1:+12437754 None:intergenic
GATGCTCCACTAGATGAATA+TGG 0.428275 5.1:-12436407 MS.gene010574:intron
GGATAAGTATCGGAAGATAC+TGG 0.430719 5.1:-12434433 MS.gene010574:CDS
TTGGCTATAATTATATGAGC+TGG 0.432960 5.1:-12437054 MS.gene010574:CDS
CTCATATAATTATAGCCAAC+AGG 0.433077 5.1:+12437058 None:intergenic
CACAGAGTCTGGAGATTGTT+CGG 0.434462 5.1:-12435964 MS.gene010574:CDS
GGCATTGGATATGGACGGTA+TGG 0.439770 5.1:-12434480 MS.gene010574:CDS
TCCTTTAGATGACCATACTT+TGG 0.441192 5.1:+12436167 None:intergenic
ATCACAATAAAAGCCATTGC+AGG 0.441306 5.1:+12436833 None:intergenic
GACTGGGGCGCTTGCCTCCA+TGG 0.441580 5.1:+12435267 None:intergenic
TCAAGTCCATGGATAACAAC+TGG 0.444007 5.1:+12434858 None:intergenic
TTCAACCAAGATCGCGGTAC+AGG 0.444319 5.1:+12434222 None:intergenic
GATACAGTTACTATGCATCT+TGG 0.447161 5.1:+12433672 None:intergenic
ATGTGCCAATTCTTAAGATT+AGG 0.447730 5.1:+12434087 None:intergenic
GTCTGGAGATGCAAGATTCA+TGG 0.451253 5.1:+12434693 None:intergenic
GACCTTATGTTTGTGCTGAA+TGG 0.451811 5.1:-12437889 MS.gene010574:CDS
TGCAATGACTGCAACTATGC+CGG 0.452021 5.1:-12434389 MS.gene010574:CDS
GCAAATGCCAAATCCTGAAC+AGG 0.454857 5.1:+12436631 None:intergenic
GCAAGCTTTGGAACTCCGTT+GGG 0.457912 5.1:-12433976 MS.gene010574:CDS
CTCATTAGGAAACTTCCAAC+AGG 0.461938 5.1:-12436084 MS.gene010574:intron
ACTTCGTTCATGCAGTATCA+TGG 0.463350 5.1:-12436488 MS.gene010574:intron
GTTCACTTGCATTGTAATCC+TGG 0.466125 5.1:-12434024 MS.gene010574:CDS
TGCAAGCTTTGGAACTCCGT+TGG 0.468131 5.1:-12433977 MS.gene010574:CDS
TAGGTGGACATTTCGAGACT+TGG 0.469028 5.1:-12434899 MS.gene010574:CDS
TTGAAAACAGGTTCTGCCTA+TGG 0.473721 5.1:-12435115 MS.gene010574:intron
TTCCATTCAGCACAAACATA+AGG 0.476231 5.1:+12437887 None:intergenic
AGGAGAAGAGCCGTTGGCAT+TGG 0.476447 5.1:-12434495 MS.gene010574:CDS
AGGGAAAGTTGGACTTGTCT+TGG 0.479897 5.1:-12434833 MS.gene010574:CDS
AGTTGACTGAACAATGAGAC+TGG 0.484163 5.1:+12435250 None:intergenic
TTTCAGATTGAGAACGAGTA+CGG 0.484235 5.1:-12437103 MS.gene010574:intron
AAATGGGAACTGGGGTTCCA+TGG 0.487177 5.1:-12437012 MS.gene010574:CDS
ATTATCTTTGGTATATAACT+AGG 0.491695 5.1:-12435492 MS.gene010574:intron
ATGGAAGAGATGGCTTGGCC+AGG 0.493929 5.1:+12434006 None:intergenic
CTGTTGGAAGTTTCCTAATG+AGG 0.496460 5.1:+12436085 None:intergenic
CTCCTTTAATTGGTAATAGT+CGG 0.497136 5.1:+12433579 None:intergenic
CGCTTCAATACATTTGGACA+CGG 0.497321 5.1:+12433627 None:intergenic
CAACCAAGCTGGCACTTTGG+AGG 0.500883 5.1:+12434356 None:intergenic
GCGAAAATGGCTGTTGAAAT+GGG 0.500883 5.1:-12437028 MS.gene010574:CDS
GGAACTCCGTTGGGAACCTG+TGG 0.501954 5.1:-12433967 MS.gene010574:CDS
TGGACTTGATAAGGGAAAGT+TGG 0.502894 5.1:-12434844 MS.gene010574:CDS
ACTTGGAACACAGGAATCCT+AGG 0.504422 5.1:-12434882 MS.gene010574:CDS
AGACCTCCAAAGTGCCAGCT+TGG 0.504856 5.1:-12434359 MS.gene010574:CDS
TAAAGTACATTTCCAGGAGA+AGG 0.507122 5.1:+12438085 None:intergenic
CCTATCCTCCCTCGTTCCAT+AGG 0.507305 5.1:+12435099 None:intergenic
GCTTTGCTCAGTGTTGCTGT+TGG 0.508572 5.1:-12435025 MS.gene010574:CDS
CTATATGCTCATCTAAGGAT+TGG 0.509830 5.1:-12437911 MS.gene010574:CDS
TCATCTAAAGGAGCTTCATA+AGG 0.510452 5.1:-12436156 MS.gene010574:CDS
ACTTTCCCTTATCAAGTCCA+TGG 0.511804 5.1:+12434847 None:intergenic
AGTAAAATGCTCGGACCTGT+TGG 0.512159 5.1:-12437073 MS.gene010574:CDS
GGGTTCACTGAGAAAATTGT+GGG 0.515564 5.1:-12437339 MS.gene010574:CDS
CCGCAACCAAGCTGGCACTT+TGG 0.516505 5.1:+12434353 None:intergenic
TAAACTTACCATCGCTGAGT+TGG 0.516833 5.1:+12434326 None:intergenic
CGAACGTCTCTATGAGTCAC+AGG 0.517270 5.1:-12437304 MS.gene010574:CDS
TTCAGATTGAGAACGAGTAC+GGG 0.518121 5.1:-12437102 MS.gene010574:intron
AAACAGCATTTCTACAATCC+GGG 0.519384 5.1:+12435850 None:intergenic
CTAGGTCCAGTTGTTATCCA+TGG 0.519979 5.1:-12434864 MS.gene010574:CDS
TCTAAACAGGTTGGGCTGAA+AGG 0.520731 5.1:-12434721 MS.gene010574:intron
CCAAAGTGCCAGCTTGGTTG+CGG 0.522281 5.1:-12434353 MS.gene010574:CDS
GTCTCATTGTTCAGTCAACT+GGG 0.522806 5.1:-12435247 MS.gene010574:CDS
GATATGGACGGTATGGGTAA+AGG 0.524506 5.1:-12434473 MS.gene010574:CDS
CCTATGGAACGAGGGAGGAT+AGG 0.527657 5.1:-12435099 MS.gene010574:CDS
ATCTTATGACATCCTAGAGC+AGG 0.529494 5.1:-12433911 MS.gene010574:intron
GCGCTTGCCTCCATGGAGAA+AGG 0.529626 5.1:+12435274 None:intergenic
GTGGTCCGTCAGCATCCTCC+CGG 0.529747 5.1:-12435868 MS.gene010574:CDS
TCCTTGCTCGTAACTCCCAC+AGG 0.529981 5.1:+12433951 None:intergenic
TGGATTAATGGGATAAGTAT+CGG 0.531326 5.1:-12434443 MS.gene010574:CDS
TCATCTGAATCCTTTCTCCA+TGG 0.533331 5.1:-12435284 MS.gene010574:CDS
GGCGATGTAAATCTTCGTGC+TGG 0.533335 5.1:-12435061 MS.gene010574:CDS
CTCTCACCATATTCATCTAG+TGG 0.534089 5.1:+12436401 None:intergenic
ATTCAGACAGTGCATAAAGC+AGG 0.537187 5.1:-12437935 MS.gene010574:CDS
ATTTAATGGAAGAGATGGCT+TGG 0.537298 5.1:+12434001 None:intergenic
TACTGGACTGCTATAGCTAC+TGG 0.538077 5.1:-12434416 MS.gene010574:CDS
TGGCCCTATAATCCTCTCTC+AGG 0.540553 5.1:-12437280 MS.gene010574:intron
CAAATAGTGAGAGGTTCTCA+TGG 0.540874 5.1:-12435609 MS.gene010574:CDS
GGTGCTTCTAGGATAATGTA+TGG 0.542014 5.1:+12438300 None:intergenic
TGGAGCATCATAATCATAGC+TGG 0.543197 5.1:+12436421 None:intergenic
TCTTGTCTAAAGCTTATGCC+AGG 0.547655 5.1:+12437733 None:intergenic
CTACAATGTGGACAGAGGCT+TGG 0.548782 5.1:-12436782 MS.gene010574:CDS
GGACAGAGGCTTGGAGTGGC+TGG 0.550267 5.1:-12436773 MS.gene010574:intron
GCAATGACTGCAACTATGCC+GGG 0.550704 5.1:-12434388 MS.gene010574:CDS
ATCCTTTGTAAACTACTACA+TGG 0.552138 5.1:-12436581 MS.gene010574:intron
ACCAAAGTATGGTCATCTAA+AGG 0.556252 5.1:-12436168 MS.gene010574:CDS
ATGAACATTCCAAAACACAT+AGG 0.556850 5.1:+12438111 None:intergenic
TCTTCCTTGCACATAATCCA+TGG 0.561005 5.1:+12436995 None:intergenic
TGGCTGTTGAAATGGGAACT+GGG 0.561613 5.1:-12437021 MS.gene010574:CDS
TGGCTATAATTATATGAGCT+GGG 0.564896 5.1:-12437053 MS.gene010574:CDS
ATGGTTGAGTTACCTGCTCT+AGG 0.565522 5.1:+12433899 None:intergenic
TTCTGTAGAGTGGATGCAGT+CGG 0.566147 5.1:-12434662 MS.gene010574:CDS
AGGGAAGAAATGACCTTGTG+AGG 0.567058 5.1:-12437961 MS.gene010574:CDS
TTGGTTGACCGCAACCAAGC+TGG 0.567877 5.1:+12434345 None:intergenic
TCTACAGAAGAGATACCGTC+TGG 0.572481 5.1:+12434676 None:intergenic
TTGGCAGAAATGGACTTACC+AGG 0.575230 5.1:-12434814 MS.gene010574:intron
AAAATGAAAGAAACCTTGAA+AGG 0.578101 5.1:+12437703 None:intergenic
CTTTGGAGGTCTAAATGACC+CGG 0.586826 5.1:+12434370 None:intergenic
GATAGGAGATTCAGATACAC+TGG 0.587998 5.1:-12435082 MS.gene010574:CDS
TTAAGAAGGAACATACATCT+GGG 0.588259 5.1:+12438278 None:intergenic
CTGTCTGAATAAACCTCACA+AGG 0.590928 5.1:+12437948 None:intergenic
ACGGTATCTCTTCTGTAGAG+TGG 0.591236 5.1:-12434672 MS.gene010574:CDS
AGTACCTTGTGCCATGTCAG+TGG 0.600254 5.1:+12434616 None:intergenic
GCATTGGATATGGACGGTAT+GGG 0.601630 5.1:-12434479 MS.gene010574:CDS
TCCTGAAGGAGAAGAGCCGT+TGG 0.602178 5.1:-12434501 MS.gene010574:CDS
CAGGTTCTGCCTATGGAACG+AGG 0.608599 5.1:-12435108 MS.gene010574:CDS
GTTGACTGAACAATGAGACT+GGG 0.608641 5.1:+12435251 None:intergenic
GGGAGGATGCTGACGGACCA+CGG 0.608959 5.1:+12435870 None:intergenic
AAAGGTTACACGCCTGAGAG+AGG 0.610777 5.1:+12437268 None:intergenic
TGACAGATAAACACCTGCAA+TGG 0.611125 5.1:-12436846 MS.gene010574:intron
AGGGTTCACTGAGAAAATTG+TGG 0.611742 5.1:-12437340 MS.gene010574:CDS
CGTGTCCAAATGTATTGAAG+CGG 0.611974 5.1:-12433626 MS.gene010574:CDS
TCAACCAAGATCGCGGTACA+GGG 0.613309 5.1:+12434223 None:intergenic
CATGGATAACAACTGGACCT+AGG 0.619397 5.1:+12434865 None:intergenic
ACCTGTGGGAGTTACGAGCA+AGG 0.622090 5.1:-12433952 MS.gene010574:CDS
GGTTCCATGGATTATGTGCA+AGG 0.622891 5.1:-12436999 MS.gene010574:CDS
ACAGGTTGGGCTGAAAGGAG+AGG 0.624284 5.1:-12434716 MS.gene010574:intron
AAATAGTGAGAGGTTCTCAT+GGG 0.625927 5.1:-12435608 MS.gene010574:CDS
CATTTCGAGACTTGGAACAC+AGG 0.627929 5.1:-12434891 MS.gene010574:CDS
GTGCTGTCAAAGAACGTAGG+TGG 0.632196 5.1:-12434915 MS.gene010574:intron
GAACTCCGTTGGGAACCTGT+GGG 0.632994 5.1:-12433966 MS.gene010574:CDS
TGTGTCGATAGTGTTGATGT+AGG 0.635805 5.1:-12435308 MS.gene010574:intron
GCGGTCAACCAACTCAGCGA+TGG 0.636481 5.1:-12434334 MS.gene010574:intron
ATGAATCTTGCATCTCCAGA+CGG 0.639322 5.1:-12434691 MS.gene010574:CDS
TAATGAGGTAACAACTGGGT+CGG 0.642934 5.1:+12436100 None:intergenic
AAAGAAATCAGCCACTGACA+TGG 0.643939 5.1:-12434627 MS.gene010574:CDS
ACAATCCGGGAGGATGCTGA+CGG 0.647302 5.1:+12435863 None:intergenic
GGCTGTTGAAATGGGAACTG+GGG 0.648362 5.1:-12437020 MS.gene010574:CDS
TTCTGCCTATGGAACGAGGG+AGG 0.648951 5.1:-12435104 MS.gene010574:CDS
CGAACAATCTCCAGACTCTG+TGG 0.651892 5.1:+12435965 None:intergenic
GCTTCAATACATTTGGACAC+GGG 0.653797 5.1:+12433628 None:intergenic
TAACTCCCACAGGTTCCCAA+CGG 0.655357 5.1:+12433961 None:intergenic
TCTGAATCCTTTCTCCATGG+AGG 0.655908 5.1:-12435281 MS.gene010574:CDS
AGATGATGCTCCAGATCCAG+TGG 0.655965 5.1:-12436975 MS.gene010574:intron
AACCATGTAGTAGTTTACAA+AGG 0.656727 5.1:+12436579 None:intergenic
CCGTCCATATCCAATGCCAA+CGG 0.663142 5.1:+12434485 None:intergenic
TGTTGCCTACAAATAGTGAG+AGG 0.667469 5.1:-12435618 MS.gene010574:CDS
TGGAACAGATAAACGTAACG+AGG 0.667526 5.1:-12435525 MS.gene010574:CDS
CCGTTGGCATTGGATATGGA+CGG 0.668995 5.1:-12434485 MS.gene010574:CDS
TCAGCCACTGACATGGCACA+AGG 0.674579 5.1:-12434620 MS.gene010574:intron
GGGGTACAGAGTAAAATGCT+CGG 0.677281 5.1:-12437082 MS.gene010574:CDS
AGGTTCTGCCTATGGAACGA+GGG 0.683437 5.1:-12435107 MS.gene010574:CDS
GGAACAGATAAACGTAACGA+GGG 0.684679 5.1:-12435524 MS.gene010574:CDS
GAACGTCTCTATGAGTCACA+GGG 0.688976 5.1:-12437303 MS.gene010574:CDS
AACCCTACAAGCCTACAATG+TGG 0.692362 5.1:-12436794 MS.gene010574:CDS
CAAGCCTACAATGTGGACAG+AGG 0.694525 5.1:-12436787 MS.gene010574:CDS
TAAGAAGGAACATACATCTG+GGG 0.694839 5.1:+12438279 None:intergenic
TCAGATTGAGAACGAGTACG+GGG 0.703138 5.1:-12437101 MS.gene010574:intron
TGCACTATAACTTACCTCCG+TGG 0.705990 5.1:-12435887 MS.gene010574:CDS
TAAAAGGACCTCCAGCTGTG+CGG 0.707061 5.1:+12436450 None:intergenic
TTCCTAATGAGGTAACAACT+GGG 0.708927 5.1:+12436096 None:intergenic
ATGTGGACAGAGGCTTGGAG+TGG 0.718389 5.1:-12436777 MS.gene010574:CDS
TTTGTGCTGTCAAAGAACGT+AGG 0.718616 5.1:-12434918 MS.gene010574:intron
TTGACTGAACAATGAGACTG+GGG 0.724383 5.1:+12435252 None:intergenic
CAGCATTTCTACAATCCGGG+AGG 0.731201 5.1:+12435853 None:intergenic
TCGTTCATGCAGTATCATGG+AGG 0.745456 5.1:-12436485 MS.gene010574:intron
CGTCTCTATGAGTCACAGGG+TGG 0.748644 5.1:-12437300 MS.gene010574:CDS
AGGATGCTGACGGACCACGG+AGG 0.817951 5.1:+12435873 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATAATGTTAATAACTTTTAA+GGG + chr5.1:12434983-12435002 None:intergenic 10.0%
!! AAAAAGCAAATTAACAATAA+AGG + chr5.1:12434667-12434686 None:intergenic 15.0%
!! AACATAAAATCATTAAACAA+TGG + chr5.1:12434122-12434141 None:intergenic 15.0%
!!! CAAATTTTCAATTGTTAAAT+CGG + chr5.1:12435373-12435392 None:intergenic 15.0%
!!! CATAATGTTAATAACTTTTA+AGG + chr5.1:12434984-12435003 None:intergenic 15.0%
!!! TAATGTTAATAACTTTTAAG+GGG + chr5.1:12434982-12435001 None:intergenic 15.0%
!!! TATTCGTTAATTAACATTTT+AGG - chr5.1:12437613-12437632 MS.gene010574:intron 15.0%
!!! TTTGATTTTCTTAATTAAGA+AGG + chr5.1:12433653-12433672 None:intergenic 15.0%
!! AAATATTGACAGGTTTAATT+AGG - chr5.1:12435721-12435740 MS.gene010574:intron 20.0%
!! AATTGTTAAATCTCTATGAA+TGG + chr5.1:12436204-12436223 None:intergenic 20.0%
!! ACTTCAATTGAAAAAAATGA+AGG + chr5.1:12434517-12434536 None:intergenic 20.0%
!! ATTATCTTTGGTATATAACT+AGG - chr5.1:12436422-12436441 MS.gene010574:CDS 20.0%
!! CGATTTAACAATTGAAAATT+TGG - chr5.1:12435371-12435390 MS.gene010574:intron 20.0%
!! CTTTCCTAAAAACAATTAAA+GGG + chr5.1:12434713-12434732 None:intergenic 20.0%
!! TCATAAACAAACTGAAAAAA+AGG + chr5.1:12433694-12433713 None:intergenic 20.0%
!! TGATATATATGATTGAAAAC+AGG - chr5.1:12436787-12436806 MS.gene010574:CDS 20.0%
!! TGATTGTTAAATGAAGAAAA+TGG + chr5.1:12438037-12438056 None:intergenic 20.0%
!! TTGTTTCAATAAATATTGAC+AGG - chr5.1:12435711-12435730 MS.gene010574:intron 20.0%
!!! AATGTTAATAACTTTTAAGG+GGG + chr5.1:12434981-12435000 None:intergenic 20.0%
!!! ATCAGTTATTTCATCATTTT+TGG + chr5.1:12437364-12437383 None:intergenic 20.0%
!!! ATTTCTGTCAACTTTATTTT+TGG - chr5.1:12438160-12438179 MS.gene010574:CDS 20.0%
!!! GAAGTAGTTTTTTTAATGAA+TGG - chr5.1:12434532-12434551 MS.gene010574:intron 20.0%
!!! TCAGTTATTTCATCATTTTT+GGG + chr5.1:12437363-12437382 None:intergenic 20.0%
!!! TTGCTAATGAAATTTTTGAA+GGG + chr5.1:12437763-12437782 None:intergenic 20.0%
!!! TTTGCTAATGAAATTTTTGA+AGG + chr5.1:12437764-12437783 None:intergenic 20.0%
! AAAATGAAAGAAACCTTGAA+AGG + chr5.1:12434214-12434233 None:intergenic 25.0%
! AAGTTATTAACATTATGCAC+CGG - chr5.1:12434987-12435006 MS.gene010574:intron 25.0%
! AGGAGAATTTCAGAAAATAA+AGG + chr5.1:12436939-12436958 None:intergenic 25.0%
! ATCATCCTAATCTTAAGAAT+TGG - chr5.1:12437822-12437841 MS.gene010574:intron 25.0%
! ATTTCCGAAATTCCAAAATA+TGG + chr5.1:12435193-12435212 None:intergenic 25.0%
! CCTTTCCTAAAAACAATTAA+AGG + chr5.1:12434714-12434733 None:intergenic 25.0%
! GGTTAAAAAATACCTAACAT+GGG - chr5.1:12437649-12437668 MS.gene010574:intron 25.0%
! TCACTAGTCATGTATATATT+TGG + chr5.1:12434468-12434487 None:intergenic 25.0%
! TGGTTAAAAAATACCTAACA+TGG - chr5.1:12437648-12437667 MS.gene010574:intron 25.0%
! TTTCCGAAATTCCAAAATAT+GGG + chr5.1:12435192-12435211 None:intergenic 25.0%
!! AAAGGTCAAATATGGATTAA+TGG - chr5.1:12437459-12437478 MS.gene010574:intron 25.0%
!! AAATTAGTACAGAAGTATGT+GGG + chr5.1:12436574-12436593 None:intergenic 25.0%
!! AAGGTCAAATATGGATTAAT+GGG - chr5.1:12437460-12437479 MS.gene010574:intron 25.0%
!! ACTGTATCAAACAGTAATTT+TGG - chr5.1:12438257-12438276 MS.gene010574:intron 25.0%
!! ATCCTCCTTTTTGTATAAAT+CGG + chr5.1:12435315-12435334 None:intergenic 25.0%
!! ATTCATTTTCTCCCTATATT+AGG - chr5.1:12436246-12436265 MS.gene010574:intron 25.0%
!! ATTTTTACACAGAAATGTGT+AGG - chr5.1:12438215-12438234 MS.gene010574:intron 25.0%
!! CATTGATAGTTATGGAAAAT+CGG - chr5.1:12437847-12437866 MS.gene010574:intron 25.0%
!! CTGTATCAAACAGTAATTTT+GGG - chr5.1:12438258-12438277 MS.gene010574:intron 25.0%
!! TAAATTAGTACAGAAGTATG+TGG + chr5.1:12436575-12436594 None:intergenic 25.0%
!! TAATTGAAACCTATGTGTTT+TGG - chr5.1:12433794-12433813 MS.gene010574:intron 25.0%
!! TAATTTGTGTGTATACTGAA+TGG - chr5.1:12433904-12433923 MS.gene010574:intron 25.0%
!!! AAGTCCCTTTAATTGTTTTT+AGG - chr5.1:12434706-12434725 MS.gene010574:CDS 25.0%
!!! ATATTTTGGAATTTCGGAAA+TGG - chr5.1:12435192-12435211 MS.gene010574:intron 25.0%
!!! CAGTTATTTCATCATTTTTG+GGG + chr5.1:12437362-12437381 None:intergenic 25.0%
!!! CCTTTAATTGTTTTTAGGAA+AGG - chr5.1:12434711-12434730 MS.gene010574:CDS 25.0%
!!! TAATCTGTTAGTTGTTTTTG+AGG - chr5.1:12437724-12437743 MS.gene010574:CDS 25.0%
!!! TGTTTCCTTTAACTTTTTGA+TGG + chr5.1:12436767-12436786 None:intergenic 25.0%
AAAACAGCATTTCTACAATC+CGG + chr5.1:12436068-12436087 None:intergenic 30.0%
AACCATGTAGTAGTTTACAA+AGG + chr5.1:12435338-12435357 None:intergenic 30.0%
AAGGTGAATAAATTGTGTAC+AGG + chr5.1:12436173-12436192 None:intergenic 30.0%
AAGTTGACAGAAATTAGAGA+CGG + chr5.1:12438154-12438173 None:intergenic 30.0%
AATGTATGGAACCAGAAAAA+AGG + chr5.1:12433603-12433622 None:intergenic 30.0%
ACTCTACTTTCAACTAGTTA+GGG + chr5.1:12436535-12436554 None:intergenic 30.0%
AGGTAGAAAACAAAACTTAC+TGG + chr5.1:12436919-12436938 None:intergenic 30.0%
ATATGACTAGTGAAACCAAA+TGG - chr5.1:12434284-12434303 MS.gene010574:intron 30.0%
ATCCTTTGTAAACTACTACA+TGG - chr5.1:12435333-12435352 MS.gene010574:intron 30.0%
ATGAACATTCCAAAACACAT+AGG + chr5.1:12433806-12433825 None:intergenic 30.0%
ATGTGCCAATTCTTAAGATT+AGG + chr5.1:12437830-12437849 None:intergenic 30.0%
ATTAAGAAGGAACATACATC+TGG + chr5.1:12433640-12433659 None:intergenic 30.0%
ATTGAAGGTAAAATCGATTG+GGG - chr5.1:12434333-12434352 MS.gene010574:intron 30.0%
CAACTAGTTAGGGAATATAA+AGG + chr5.1:12436525-12436544 None:intergenic 30.0%
CACTTCCATCAAAAAGTTAA+AGG - chr5.1:12436759-12436778 MS.gene010574:intron 30.0%
CAGAAAAAAGGATTCTTCTT+TGG + chr5.1:12433591-12433610 None:intergenic 30.0%
CATTGAAGGTAAAATCGATT+GGG - chr5.1:12434332-12434351 MS.gene010574:intron 30.0%
CTCATATAATTATAGCCAAC+AGG + chr5.1:12434859-12434878 None:intergenic 30.0%
TAAAGTACAATTAAGCAACC+TGG + chr5.1:12437121-12437140 None:intergenic 30.0%
TCATTGAAGGTAAAATCGAT+TGG - chr5.1:12434331-12434350 MS.gene010574:intron 30.0%
TCCAAAGCTTGCAAATTTAA+TGG + chr5.1:12437930-12437949 None:intergenic 30.0%
TCCATTAAATTTGCAAGCTT+TGG - chr5.1:12437926-12437945 MS.gene010574:CDS 30.0%
TGAAAGTAAAGTACATTTCC+AGG + chr5.1:12433838-12433857 None:intergenic 30.0%
TGCAAATTTAATGGAAGAGA+TGG + chr5.1:12437921-12437940 None:intergenic 30.0%
TGGATTAATGGGATAAGTAT+CGG - chr5.1:12437471-12437490 MS.gene010574:intron 30.0%
TGGCTATAATTATATGAGCT+GGG - chr5.1:12434861-12434880 MS.gene010574:CDS 30.0%
TGTGTCAATAAAGGAACTTA+CGG + chr5.1:12435893-12435912 None:intergenic 30.0%
TTAAGAAGGAACATACATCT+GGG + chr5.1:12433639-12433658 None:intergenic 30.0%
TTAATTAGGCAACCAAAGTA+TGG - chr5.1:12435735-12435754 MS.gene010574:intron 30.0%
TTGCATATTCAGGAATTTGA+TGG - chr5.1:12435020-12435039 MS.gene010574:CDS 30.0%
TTGGCTATAATTATATGAGC+TGG - chr5.1:12434860-12434879 MS.gene010574:CDS 30.0%
TTTGTAAACTACTACATGGT+TGG - chr5.1:12435337-12435356 MS.gene010574:intron 30.0%
! AATTGGCACATTGATAGTTA+TGG - chr5.1:12437839-12437858 MS.gene010574:intron 30.0%
! ACATGAAGGTTTTCAGAATT+CGG - chr5.1:12435241-12435260 MS.gene010574:CDS 30.0%
! AGTTACTTACTCCCATATTT+TGG - chr5.1:12435178-12435197 MS.gene010574:intron 30.0%
! ATAAAGGCGTAAGTAATTTC+CGG + chr5.1:12436509-12436528 None:intergenic 30.0%
! ATTCTGAAAACCTTCATGTT+TGG + chr5.1:12435240-12435259 None:intergenic 30.0%
! ATTTTCAAAGCTAAAGAAGG+AGG - chr5.1:12433763-12433782 MS.gene010574:intron 30.0%
! ATTTTCTCCCTATATTAGGT+TGG - chr5.1:12436250-12436269 MS.gene010574:intron 30.0%
! CTGATTTTCAAAGCTAAAGA+AGG - chr5.1:12433760-12433779 MS.gene010574:intron 30.0%
! TATCATGGAGGAACAAATTT+TGG - chr5.1:12435441-12435460 MS.gene010574:intron 30.0%
! TCAATGCAGTACAATTTTGA+GGG - chr5.1:12433934-12433953 MS.gene010574:CDS 30.0%
! TCCTCCTTTTTGTATAAATC+GGG + chr5.1:12435314-12435333 None:intergenic 30.0%
! TTACAATGCAAGTGAACTTT+TGG + chr5.1:12437887-12437906 None:intergenic 30.0%
! TTCAATGCAGTACAATTTTG+AGG - chr5.1:12433933-12433952 MS.gene010574:CDS 30.0%
! TTTGTGCTGAATGGAATTTT+GGG - chr5.1:12434034-12434053 MS.gene010574:CDS 30.0%
! TTTTCTTTTGCCAAACATGA+AGG - chr5.1:12435227-12435246 MS.gene010574:CDS 30.0%
!! TTTAGGAAAGGTGCTAATTA+TGG - chr5.1:12434723-12434742 MS.gene010574:intron 30.0%
!!! ACTCCCATATTTTGGAATTT+CGG - chr5.1:12435186-12435205 MS.gene010574:intron 30.0%
!!! CAAAGAAGAATCCTTTTTTC+TGG - chr5.1:12433589-12433608 MS.gene010574:CDS 30.0%
!!! TAGTTGTTTTTGAGGAACTT+GGG - chr5.1:12437732-12437751 MS.gene010574:CDS 30.0%
!!! TCTTGAAAAGTTTGCTGTTT+TGG - chr5.1:12434077-12434096 MS.gene010574:CDS 30.0%
!!! TTAGTTGTTTTTGAGGAACT+TGG - chr5.1:12437731-12437750 MS.gene010574:CDS 30.0%
AAACAGCATTTCTACAATCC+GGG + chr5.1:12436067-12436086 None:intergenic 35.0%
AAATAGTGAGAGGTTCTCAT+GGG - chr5.1:12436306-12436325 MS.gene010574:intron 35.0%
AACATGAAGTAACCCATGTT+AGG + chr5.1:12437664-12437683 None:intergenic 35.0%
AACGAAGTAAGTTACTCAAG+TGG + chr5.1:12435414-12435433 None:intergenic 35.0%
AATATGCAACCACATGTTAC+CGG + chr5.1:12435009-12435028 None:intergenic 35.0%
AATTCACAAAAGACCTGTTC+AGG - chr5.1:12435270-12435289 MS.gene010574:CDS 35.0%
ACAAGACAATGAACCTTTCA+AGG - chr5.1:12434198-12434217 MS.gene010574:CDS 35.0%
ACCAAAGTATGGTCATCTAA+AGG - chr5.1:12435746-12435765 MS.gene010574:intron 35.0%
ACCCTGGAAGAAACAATAAT+TGG - chr5.1:12434370-12434389 MS.gene010574:CDS 35.0%
AGATGATCTCTTCTCTAAAC+AGG - chr5.1:12437180-12437199 MS.gene010574:intron 35.0%
AGTTCCTTTATTGACACAAG+TGG - chr5.1:12435895-12435914 MS.gene010574:CDS 35.0%
ATACCCACTTGTGTCAATAA+AGG + chr5.1:12435902-12435921 None:intergenic 35.0%
ATCACAATAAAAGCCATTGC+AGG + chr5.1:12435084-12435103 None:intergenic 35.0%
ATCTCTTCTCTAAACAGGTT+GGG - chr5.1:12437185-12437204 MS.gene010574:intron 35.0%
ATGACTAGTGACAGATTAGA+AGG - chr5.1:12434477-12434496 MS.gene010574:CDS 35.0%
ATGTTGTCATCATCAATTGC+CGG - chr5.1:12436487-12436506 MS.gene010574:intron 35.0%
ATTTAATGGAAGAGATGGCT+TGG + chr5.1:12437916-12437935 None:intergenic 35.0%
CTATATGCTCATCTAAGGAT+TGG - chr5.1:12434003-12434022 MS.gene010574:CDS 35.0%
GAAACAGACTAACTACATAC+CGG + chr5.1:12436727-12436746 None:intergenic 35.0%
GACTCTACTTTCAACTAGTT+AGG + chr5.1:12436536-12436555 None:intergenic 35.0%
GATAACCGCTTCAATACATT+TGG + chr5.1:12438296-12438315 None:intergenic 35.0%
GATACAGTTACTATGCATCT+TGG + chr5.1:12438245-12438264 None:intergenic 35.0%
GGGATACAAGTGATTATCTT+TGG - chr5.1:12436410-12436429 MS.gene010574:CDS 35.0%
GTAGCCCGATTTATACAAAA+AGG - chr5.1:12435307-12435326 MS.gene010574:intron 35.0%
GTATGGGTAAAGGTCAAATA+TGG - chr5.1:12437451-12437470 MS.gene010574:intron 35.0%
GTCGGGAGATAAATAAAGTT+TGG + chr5.1:12434396-12434415 None:intergenic 35.0%
GTTATCCATGGACTTGATAA+GGG - chr5.1:12437062-12437081 MS.gene010574:CDS 35.0%
GTTCCTTTATTGACACAAGT+GGG - chr5.1:12435896-12435915 MS.gene010574:CDS 35.0%
TAAAGTACATTTCCAGGAGA+AGG + chr5.1:12433832-12433851 None:intergenic 35.0%
TAACATGTGGTTGCATATTC+AGG - chr5.1:12435010-12435029 MS.gene010574:intron 35.0%
TAAGAAGGAACATACATCTG+GGG + chr5.1:12433638-12433657 None:intergenic 35.0%
TAGGGAGAAAATGAATTCAG+TGG + chr5.1:12436242-12436261 None:intergenic 35.0%
TCATCTAAAGGAGCTTCATA+AGG - chr5.1:12435758-12435777 MS.gene010574:intron 35.0%
TCCTTTAGATGACCATACTT+TGG + chr5.1:12435750-12435769 None:intergenic 35.0%
TCTATGAATGGAGATGTTGA+AGG + chr5.1:12436192-12436211 None:intergenic 35.0%
TGACTAGTGACAGATTAGAA+GGG - chr5.1:12434478-12434497 MS.gene010574:CDS 35.0%
TGGTTAATGAGCTTCATTGA+AGG - chr5.1:12434318-12434337 MS.gene010574:intron 35.0%
TGTATACATAAGCCTGAGAA+AGG + chr5.1:12435929-12435948 None:intergenic 35.0%
TGTTATCCATGGACTTGATA+AGG - chr5.1:12437061-12437080 MS.gene010574:CDS 35.0%
TTCCATTCAGCACAAACATA+AGG + chr5.1:12434030-12434049 None:intergenic 35.0%
TTCCTAATGAGGTAACAACT+GGG + chr5.1:12435821-12435840 None:intergenic 35.0%
TTCTTTGACAGCACAAAACA+CGG + chr5.1:12436993-12437012 None:intergenic 35.0%
TTGAAGGTAAAATCGATTGG+GGG - chr5.1:12434334-12434353 MS.gene010574:intron 35.0%
TTGCACTCCAACCTAATATA+GGG + chr5.1:12436260-12436279 None:intergenic 35.0%
TTTCAGATTGAGAACGAGTA+CGG - chr5.1:12434811-12434830 MS.gene010574:intron 35.0%
TTTCCTAATGAGGTAACAAC+TGG + chr5.1:12435822-12435841 None:intergenic 35.0%
TTTGCACTCCAACCTAATAT+AGG + chr5.1:12436261-12436280 None:intergenic 35.0%
! GCCAATTATTGTTTCTTCCA+GGG + chr5.1:12434374-12434393 None:intergenic 35.0%
! GTTTGTGCTGAATGGAATTT+TGG - chr5.1:12434033-12434052 MS.gene010574:CDS 35.0%
! TAGTAAGTACTAAGTACTGC+AGG + chr5.1:12436959-12436978 None:intergenic 35.0%
! TCATAGCTGGTAGTGATAAA+AGG + chr5.1:12435483-12435502 None:intergenic 35.0%
! TGAACAGGTCTTTTGTGAAT+TGG + chr5.1:12435271-12435290 None:intergenic 35.0%
! TTTTATGTTGTCATGTGCAG+AGG - chr5.1:12434133-12434152 MS.gene010574:CDS 35.0%
! TTTTGCAGAAAGCAATGCAA+GGG - chr5.1:12434555-12434574 MS.gene010574:intron 35.0%
!! ATTTTAGGTGATGCATGACT+TGG - chr5.1:12437628-12437647 MS.gene010574:intron 35.0%
!! TATATTTGGTCTTAACCCTC+CGG + chr5.1:12434454-12434473 None:intergenic 35.0%
!! TTCTTCTAGATCTAGCTTTG+TGG - chr5.1:12434753-12434772 MS.gene010574:intron 35.0%
!!! AGTTGTTTTTGAGGAACTTG+GGG - chr5.1:12437733-12437752 MS.gene010574:CDS 35.0%
!!! TGCTGTTTTTAACACAGCAA+AGG - chr5.1:12436079-12436098 MS.gene010574:intron 35.0%
!!! TTGCTGTTTTGGTCTTTTGA+GGG - chr5.1:12434088-12434107 MS.gene010574:CDS 35.0%
!!! TTTGCTGTTTTGGTCTTTTG+AGG - chr5.1:12434087-12434106 MS.gene010574:CDS 35.0%
AAAGAAATCAGCCACTGACA+TGG - chr5.1:12437287-12437306 MS.gene010574:CDS 40.0%
AAGTAGTCAGTTTAGTCCTC+CGG + chr5.1:12435690-12435709 None:intergenic 40.0%
AATAACTGCTTCTGGTCTCT+TGG - chr5.1:12436369-12436388 MS.gene010574:intron 40.0%
AATGTTCATGAACCTTCTCC+TGG - chr5.1:12433817-12433836 MS.gene010574:intron 40.0%
ACTTCGTTCATGCAGTATCA+TGG - chr5.1:12435426-12435445 MS.gene010574:intron 40.0%
ACTTTCCCTTATCAAGTCCA+TGG + chr5.1:12437070-12437089 None:intergenic 40.0%
AGAATGAGAATGCTTACCAC+TGG + chr5.1:12434958-12434977 None:intergenic 40.0%
AGGGTTCACTGAGAAAATTG+TGG - chr5.1:12434574-12434593 MS.gene010574:intron 40.0%
AGTCTCATTGTTCAGTCAAC+TGG - chr5.1:12436666-12436685 MS.gene010574:CDS 40.0%
AGTTGACTGAACAATGAGAC+TGG + chr5.1:12436667-12436686 None:intergenic 40.0%
ATCTTATGACATCCTAGAGC+AGG - chr5.1:12438003-12438022 MS.gene010574:intron 40.0%
ATCTTCCCACATCTGCAAAA+GGG + chr5.1:12433740-12433759 None:intergenic 40.0%
ATGAATCTTGCATCTCCAGA+CGG - chr5.1:12437223-12437242 MS.gene010574:intron 40.0%
ATTCAGACAGTGCATAAAGC+AGG - chr5.1:12433979-12433998 MS.gene010574:CDS 40.0%
CAAAAGACCTGTTCAGGATT+TGG - chr5.1:12435276-12435295 MS.gene010574:CDS 40.0%
CAAAGCTAAAGAAGGAGGTT+TGG - chr5.1:12433768-12433787 MS.gene010574:intron 40.0%
CAAATAGTGAGAGGTTCTCA+TGG - chr5.1:12436305-12436324 MS.gene010574:intron 40.0%
CAGGACTATATGCTCATCTA+AGG - chr5.1:12433998-12434017 MS.gene010574:CDS 40.0%
CATCACTCTTGCAGAAGATT+TGG + chr5.1:12435997-12436016 None:intergenic 40.0%
CGCTTCAATACATTTGGACA+CGG + chr5.1:12438290-12438309 None:intergenic 40.0%
CGTGTCCAAATGTATTGAAG+CGG - chr5.1:12438288-12438307 MS.gene010574:intron 40.0%
CTCATTAGGAAACTTCCAAC+AGG - chr5.1:12435830-12435849 MS.gene010574:intron 40.0%
CTCTCACCATATTCATCTAG+TGG + chr5.1:12435516-12435535 None:intergenic 40.0%
CTGTCTGAATAAACCTCACA+AGG + chr5.1:12433969-12433988 None:intergenic 40.0%
CTGTTGGAAGTTTCCTAATG+AGG + chr5.1:12435832-12435851 None:intergenic 40.0%
GACCAGATTTCAGATTACGA+GGG - chr5.1:12434413-12434432 MS.gene010574:CDS 40.0%
GACCTTATGTTTGTGCTGAA+TGG - chr5.1:12434025-12434044 MS.gene010574:CDS 40.0%
GAGAACCTCTCACTATTTGT+AGG + chr5.1:12436304-12436323 None:intergenic 40.0%
GATAGGAGATTCAGATACAC+TGG - chr5.1:12436832-12436851 MS.gene010574:CDS 40.0%
GATCTCTTCTCTAAACAGGT+TGG - chr5.1:12437184-12437203 MS.gene010574:intron 40.0%
GATGCTCCACTAGATGAATA+TGG - chr5.1:12435507-12435526 MS.gene010574:CDS 40.0%
GCAACTACAATAACTGCTTC+TGG - chr5.1:12436361-12436380 MS.gene010574:intron 40.0%
GCCCGATTTATACAAAAAGG+AGG - chr5.1:12435310-12435329 MS.gene010574:intron 40.0%
GCGAAAATGGCTGTTGAAAT+GGG - chr5.1:12434886-12434905 MS.gene010574:CDS 40.0%
GCTTCAATACATTTGGACAC+GGG + chr5.1:12438289-12438308 None:intergenic 40.0%
GGAACAGATAAACGTAACGA+GGG - chr5.1:12436390-12436409 MS.gene010574:intron 40.0%
GGGTTCACTGAGAAAATTGT+GGG - chr5.1:12434575-12434594 MS.gene010574:intron 40.0%
GTAGGCTTGTAGGGTTTATT+GGG + chr5.1:12435116-12435135 None:intergenic 40.0%
GTCTCATTGTTCAGTCAACT+GGG - chr5.1:12436667-12436686 MS.gene010574:CDS 40.0%
GTTCACTTGCATTGTAATCC+TGG - chr5.1:12437890-12437909 MS.gene010574:CDS 40.0%
GTTGACTGAACAATGAGACT+GGG + chr5.1:12436666-12436685 None:intergenic 40.0%
TAAACTTACCATCGCTGAGT+TGG + chr5.1:12437591-12437610 None:intergenic 40.0%
TAATGAGGTAACAACTGGGT+CGG + chr5.1:12435817-12435836 None:intergenic 40.0%
TACTTCAGTCTAGTGAAGTG+TGG + chr5.1:12435593-12435612 None:intergenic 40.0%
TATGTATACACCACAGAGTC+TGG - chr5.1:12435939-12435958 MS.gene010574:CDS 40.0%
TCAAGTCCATGGATAACAAC+TGG + chr5.1:12437059-12437078 None:intergenic 40.0%
TCATCTGAATCCTTTCTCCA+TGG - chr5.1:12436630-12436649 MS.gene010574:CDS 40.0%
TCTTCCTTGCACATAATCCA+TGG + chr5.1:12434922-12434941 None:intergenic 40.0%
TGAAAGCGAGTTTAACCTGT+TGG + chr5.1:12435848-12435867 None:intergenic 40.0%
TGACAGATAAACACCTGCAA+TGG - chr5.1:12435068-12435087 MS.gene010574:CDS 40.0%
TGCGAAAATGGCTGTTGAAA+TGG - chr5.1:12434885-12434904 MS.gene010574:CDS 40.0%
TGGAACAGATAAACGTAACG+AGG - chr5.1:12436389-12436408 MS.gene010574:intron 40.0%
TGGACTTGATAAGGGAAAGT+TGG - chr5.1:12437070-12437089 MS.gene010574:CDS 40.0%
TGTAGGCTTGTAGGGTTTAT+TGG + chr5.1:12435117-12435136 None:intergenic 40.0%
TGTTGCCTACAAATAGTGAG+AGG - chr5.1:12436296-12436315 MS.gene010574:intron 40.0%
TTCAGATTGAGAACGAGTAC+GGG - chr5.1:12434812-12434831 MS.gene010574:intron 40.0%
TTGAAAACAGGTTCTGCCTA+TGG - chr5.1:12436799-12436818 MS.gene010574:CDS 40.0%
TTGACTGAACAATGAGACTG+GGG + chr5.1:12436665-12436684 None:intergenic 40.0%
TTTGTGCTGTCAAAGAACGT+AGG - chr5.1:12436996-12437015 MS.gene010574:CDS 40.0%
! AATGACCCTTTTGCAGATGT+GGG - chr5.1:12433732-12433751 MS.gene010574:intron 40.0%
! CAATGCAAGTGAACTTTTGG+AGG + chr5.1:12437884-12437903 None:intergenic 40.0%
! CATGGGTTACTTCATGTTTC+AGG - chr5.1:12437666-12437685 MS.gene010574:intron 40.0%
! CTCGTAATCTGAAATCTGGT+CGG + chr5.1:12434414-12434433 None:intergenic 40.0%
! GCTGTGCATGTTTTCATCAA+TGG - chr5.1:12436693-12436712 MS.gene010574:intron 40.0%
! GGCCAATTATTGTTTCTTCC+AGG + chr5.1:12434375-12434394 None:intergenic 40.0%
! GTTTTGCAGAAAGCAATGCA+AGG - chr5.1:12434554-12434573 MS.gene010574:intron 40.0%
! TAATGACCCTTTTGCAGATG+TGG - chr5.1:12433731-12433750 MS.gene010574:intron 40.0%
! TCGTAATCTGAAATCTGGTC+GGG + chr5.1:12434413-12434432 None:intergenic 40.0%
! TCTTGTCTAAAGCTTATGCC+AGG + chr5.1:12434184-12434203 None:intergenic 40.0%
! TGAAGGTTTTCAGAATTCGG+AGG - chr5.1:12435244-12435263 MS.gene010574:CDS 40.0%
! TGGAGCATCATAATCATAGC+TGG + chr5.1:12435496-12435515 None:intergenic 40.0%
! TTCATCAATGGTCGACTTTC+CGG - chr5.1:12436705-12436724 MS.gene010574:intron 40.0%
! TTTTGCTTCAACCAAGATCG+CGG + chr5.1:12437701-12437720 None:intergenic 40.0%
!! GGATAAGTATCGGAAGATAC+TGG - chr5.1:12437481-12437500 MS.gene010574:intron 40.0%
!! GGTGCTTCTAGGATAATGTA+TGG + chr5.1:12433617-12433636 None:intergenic 40.0%
!! TGTGTCGATAGTGTTGATGT+AGG - chr5.1:12436606-12436625 MS.gene010574:CDS 40.0%
!!! ACTTTTTTCGATGCTCCTGA+AGG - chr5.1:12437399-12437418 MS.gene010574:intron 40.0%
!!! GTTGTTTTTGAGGAACTTGG+GGG - chr5.1:12437734-12437753 MS.gene010574:CDS 40.0%
!!! TGCTGTTTTGGTCTTTTGAG+GGG - chr5.1:12434089-12434108 MS.gene010574:CDS 40.0%
!!! TTGTTTTTGAGGAACTTGGG+GGG - chr5.1:12437735-12437754 MS.gene010574:CDS 40.0%
AACCCTACAAGCCTACAATG+TGG - chr5.1:12435120-12435139 MS.gene010574:intron 45.0%
ACCACTAGAGCTCAACCATT+TGG + chr5.1:12434302-12434321 None:intergenic 45.0%
ACGCCTGAGAGAGGATTATA+GGG + chr5.1:12434640-12434659 None:intergenic 45.0%
ACGGTATCTCTTCTGTAGAG+TGG - chr5.1:12437242-12437261 MS.gene010574:intron 45.0%
ACTTGGAACACAGGAATCCT+AGG - chr5.1:12437032-12437051 MS.gene010574:CDS 45.0%
AGAATGCTTACCACTGGATC+TGG + chr5.1:12434952-12434971 None:intergenic 45.0%
AGGGAAAGTTGGACTTGTCT+TGG - chr5.1:12437081-12437100 MS.gene010574:CDS 45.0%
AGGGAAGAAATGACCTTGTG+AGG - chr5.1:12433953-12433972 MS.gene010574:CDS 45.0%
AGTAAAATGCTCGGACCTGT+TGG - chr5.1:12434841-12434860 MS.gene010574:CDS 45.0%
ATGGCTGTTGAAATGGGAAC+TGG - chr5.1:12434892-12434911 MS.gene010574:CDS 45.0%
ATGGTTGAGTTACCTGCTCT+AGG + chr5.1:12438018-12438037 None:intergenic 45.0%
CACAGAGTCTGGAGATTGTT+CGG - chr5.1:12435950-12435969 MS.gene010574:CDS 45.0%
CAGCTCACAACAGTATCCAT+AGG - chr5.1:12435656-12435675 MS.gene010574:intron 45.0%
CATGGATAACAACTGGACCT+AGG + chr5.1:12437052-12437071 None:intergenic 45.0%
CATTTCGAGACTTGGAACAC+AGG - chr5.1:12437023-12437042 MS.gene010574:CDS 45.0%
CGACCAGATTTCAGATTACG+AGG - chr5.1:12434412-12434431 MS.gene010574:CDS 45.0%
CTAGGTCCAGTTGTTATCCA+TGG - chr5.1:12437050-12437069 MS.gene010574:CDS 45.0%
GAACGTCTCTATGAGTCACA+GGG - chr5.1:12434611-12434630 MS.gene010574:intron 45.0%
GACCCAGTTGTTACCTCATT+AGG - chr5.1:12435816-12435835 MS.gene010574:intron 45.0%
GATATGGACGGTATGGGTAA+AGG - chr5.1:12437441-12437460 MS.gene010574:intron 45.0%
GATCTTCCCACATCTGCAAA+AGG + chr5.1:12433741-12433760 None:intergenic 45.0%
GCAAATGCCAAATCCTGAAC+AGG + chr5.1:12435286-12435305 None:intergenic 45.0%
GCATTGGATATGGACGGTAT+GGG - chr5.1:12437435-12437454 MS.gene010574:intron 45.0%
GGAACATACTTGAGCCAAAC+AGG + chr5.1:12434163-12434182 None:intergenic 45.0%
GGGGTACAGAGTAAAATGCT+CGG - chr5.1:12434832-12434851 MS.gene010574:CDS 45.0%
GTATCCATAGGCTACATTGC+CGG - chr5.1:12435668-12435687 MS.gene010574:intron 45.0%
GTCCACATTGTAGGCTTGTA+GGG + chr5.1:12435125-12435144 None:intergenic 45.0%
GTCTGGAGATGCAAGATTCA+TGG + chr5.1:12437224-12437243 None:intergenic 45.0%
GTGGGTATTCATCCTTTCTC+AGG - chr5.1:12435914-12435933 MS.gene010574:CDS 45.0%
TACTGGACTGCTATAGCTAC+TGG - chr5.1:12437498-12437517 MS.gene010574:intron 45.0%
TAGGTGGACATTTCGAGACT+TGG - chr5.1:12437015-12437034 MS.gene010574:CDS 45.0%
TCAGATTGAGAACGAGTACG+GGG - chr5.1:12434813-12434832 MS.gene010574:intron 45.0%
TCGTTCATGCAGTATCATGG+AGG - chr5.1:12435429-12435448 MS.gene010574:intron 45.0%
TCTACAGAAGAGATACCGTC+TGG + chr5.1:12437241-12437260 None:intergenic 45.0%
TCTGAATCCTTTCTCCATGG+AGG - chr5.1:12436633-12436652 MS.gene010574:CDS 45.0%
TGCAATGACTGCAACTATGC+CGG - chr5.1:12437525-12437544 MS.gene010574:intron 45.0%
TGCACTATAACTTACCTCCG+TGG - chr5.1:12436027-12436046 MS.gene010574:intron 45.0%
TGGACTTGTCTTGGCAGAAA+TGG - chr5.1:12437090-12437109 MS.gene010574:CDS 45.0%
TGGCTGTTGAAATGGGAACT+GGG - chr5.1:12434893-12434912 MS.gene010574:CDS 45.0%
TGTCCACATTGTAGGCTTGT+AGG + chr5.1:12435126-12435145 None:intergenic 45.0%
TTCTGTAGAGTGGATGCAGT+CGG - chr5.1:12437252-12437271 MS.gene010574:intron 45.0%
! ACCAAATGGTTGAGCTCTAG+TGG - chr5.1:12434298-12434317 MS.gene010574:intron 45.0%
! ATTACGAGGGTCCTTTTCCT+TGG - chr5.1:12434426-12434445 MS.gene010574:CDS 45.0%
! CATTATGCACCGGTAACATG+TGG - chr5.1:12434997-12435016 MS.gene010574:intron 45.0%
! CTTTGGAGGTCTAAATGACC+CGG + chr5.1:12437547-12437566 None:intergenic 45.0%
! GACCCTCGTAATCTGAAATC+TGG + chr5.1:12434418-12434437 None:intergenic 45.0%
! GGTTCCATGGATTATGTGCA+AGG - chr5.1:12434915-12434934 MS.gene010574:intron 45.0%
! GTTCTCATGGGAGAGTTTTG+AGG - chr5.1:12436318-12436337 MS.gene010574:intron 45.0%
! GTTTGGCTCAAGTATGTTCC+TGG - chr5.1:12434163-12434182 MS.gene010574:CDS 45.0%
! TCTAAACAGGTTGGGCTGAA+AGG - chr5.1:12437193-12437212 MS.gene010574:intron 45.0%
! TGTGCAGAGGTTTTCCTGTT+TGG - chr5.1:12434146-12434165 MS.gene010574:CDS 45.0%
! TTGGCAGAAATGGACTTACC+AGG - chr5.1:12437100-12437119 MS.gene010574:CDS 45.0%
!! GCAAGTGAACTTTTGGAGGA+TGG + chr5.1:12437880-12437899 None:intergenic 45.0%
!! TGTTTTTGAGGAACTTGGGG+GGG - chr5.1:12437736-12437755 MS.gene010574:CDS 45.0%
AAAGGTTACACGCCTGAGAG+AGG + chr5.1:12434649-12434668 None:intergenic 50.0%
AAATGGGAACTGGGGTTCCA+TGG - chr5.1:12434902-12434921 MS.gene010574:CDS 50.0%
AGATGATGCTCCAGATCCAG+TGG - chr5.1:12434939-12434958 MS.gene010574:intron 50.0%
AGGTTCTGCCTATGGAACGA+GGG - chr5.1:12436807-12436826 MS.gene010574:CDS 50.0%
AGTACCTTGTGCCATGTCAG+TGG + chr5.1:12437301-12437320 None:intergenic 50.0%
CAAGCCTACAATGTGGACAG+AGG - chr5.1:12435127-12435146 MS.gene010574:intron 50.0%
CAAGCCTCTGTCCACATTGT+AGG + chr5.1:12435134-12435153 None:intergenic 50.0%
CACGCCTGAGAGAGGATTAT+AGG + chr5.1:12434641-12434660 None:intergenic 50.0%
CAGCATTTCTACAATCCGGG+AGG + chr5.1:12436064-12436083 None:intergenic 50.0%
CAGTCTAGTGAAGTGTGGCA+AGG + chr5.1:12435588-12435607 None:intergenic 50.0%
CCGTCCATATCCAATGCCAA+CGG + chr5.1:12437432-12437451 None:intergenic 50.0%
CGAACAATCTCCAGACTCTG+TGG + chr5.1:12435952-12435971 None:intergenic 50.0%
CGAACGTCTCTATGAGTCAC+AGG - chr5.1:12434610-12434629 MS.gene010574:intron 50.0%
CTACAATGTGGACAGAGGCT+TGG - chr5.1:12435132-12435151 MS.gene010574:intron 50.0%
GCAATGACTGCAACTATGCC+GGG - chr5.1:12437526-12437545 MS.gene010574:intron 50.0%
GGAACTTACGGAGCAGTGAA+AGG + chr5.1:12435881-12435900 None:intergenic 50.0%
GGCGATGTAAATCTTCGTGC+TGG - chr5.1:12436853-12436872 MS.gene010574:intron 50.0%
GGCTGTTGAAATGGGAACTG+GGG - chr5.1:12434894-12434913 MS.gene010574:CDS 50.0%
GTGCTGTCAAAGAACGTAGG+TGG - chr5.1:12436999-12437018 MS.gene010574:CDS 50.0%
TAAAAGGACCTCCAGCTGTG+CGG + chr5.1:12435467-12435486 None:intergenic 50.0%
TAACTCCCACAGGTTCCCAA+CGG + chr5.1:12437956-12437975 None:intergenic 50.0%
TATGAGCTGGGCTGCGAAAA+TGG - chr5.1:12434873-12434892 MS.gene010574:CDS 50.0%
TCAACCAAGATCGCGGTACA+GGG + chr5.1:12437694-12437713 None:intergenic 50.0%
TGGCCCTATAATCCTCTCTC+AGG - chr5.1:12434634-12434653 MS.gene010574:CDS 50.0%
TTCAACCAAGATCGCGGTAC+AGG + chr5.1:12437695-12437714 None:intergenic 50.0%
! AGAGCCGTTGGCATTGGATA+TGG - chr5.1:12437425-12437444 MS.gene010574:intron 50.0%
! AGGGTCCTTTTCCTTGGAAC+CGG - chr5.1:12434432-12434451 MS.gene010574:CDS 50.0%
! CATACATCTGGGGTGCTTCT+AGG + chr5.1:12433628-12433647 None:intergenic 50.0%
! CCGTTGGCATTGGATATGGA+CGG - chr5.1:12437429-12437448 MS.gene010574:intron 50.0%
! GCTTTGCTCAGTGTTGCTGT+TGG - chr5.1:12436889-12436908 MS.gene010574:intron 50.0%
! GGCATTGGATATGGACGGTA+TGG - chr5.1:12437434-12437453 MS.gene010574:intron 50.0%
! TCCTTTTCCTTGGAACCGGA+GGG - chr5.1:12434436-12434455 MS.gene010574:CDS 50.0%
!! ACAAATTTTGGCCGCACAGC+TGG - chr5.1:12435453-12435472 MS.gene010574:intron 50.0%
!! GCAAGCTTTGGAACTCCGTT+GGG - chr5.1:12437938-12437957 MS.gene010574:CDS 50.0%
!! TGCAAGCTTTGGAACTCCGT+TGG - chr5.1:12437937-12437956 MS.gene010574:CDS 50.0%
ACAATCCGGGAGGATGCTGA+CGG + chr5.1:12436054-12436073 None:intergenic 55.0%
ACCCTCCGGTTCCAAGGAAA+AGG + chr5.1:12434440-12434459 None:intergenic 55.0%
ACCTGTGGGAGTTACGAGCA+AGG - chr5.1:12437962-12437981 MS.gene010574:CDS 55.0%
AGGAGAAGAGCCGTTGGCAT+TGG - chr5.1:12437419-12437438 MS.gene010574:intron 55.0%
ATGTGGACAGAGGCTTGGAG+TGG - chr5.1:12435137-12435156 MS.gene010574:intron 55.0%
CAACCAAGCTGGCACTTTGG+AGG + chr5.1:12437561-12437580 None:intergenic 55.0%
CAGGTTCTGCCTATGGAACG+AGG - chr5.1:12436806-12436825 MS.gene010574:CDS 55.0%
CCTATCCTCCCTCGTTCCAT+AGG + chr5.1:12436818-12436837 None:intergenic 55.0%
CCTATGGAACGAGGGAGGAT+AGG - chr5.1:12436815-12436834 MS.gene010574:CDS 55.0%
CGTCTCTATGAGTCACAGGG+TGG - chr5.1:12434614-12434633 MS.gene010574:intron 55.0%
GAACTCCGTTGGGAACCTGT+GGG - chr5.1:12437948-12437967 MS.gene010574:CDS 55.0%
GTCTTAACCCTCCGGTTCCA+AGG + chr5.1:12434446-12434465 None:intergenic 55.0%
TCAGCCACTGACATGGCACA+AGG - chr5.1:12437294-12437313 MS.gene010574:CDS 55.0%
TCCATAGGCTACATTGCCGG+AGG - chr5.1:12435671-12435690 MS.gene010574:intron 55.0%
TCCTCCGGCAATGTAGCCTA+TGG + chr5.1:12435675-12435694 None:intergenic 55.0%
TCCTGAAGGAGAAGAGCCGT+TGG - chr5.1:12437413-12437432 MS.gene010574:intron 55.0%
TCCTTGCTCGTAACTCCCAC+AGG + chr5.1:12437966-12437985 None:intergenic 55.0%
TTCTGCCTATGGAACGAGGG+AGG - chr5.1:12436810-12436829 MS.gene010574:CDS 55.0%
! ACAGGTTGGGCTGAAAGGAG+AGG - chr5.1:12437198-12437217 MS.gene010574:intron 55.0%
! AGACCTCCAAAGTGCCAGCT+TGG - chr5.1:12437555-12437574 MS.gene010574:intron 55.0%
! ATGGAAGAGATGGCTTGGCC+AGG + chr5.1:12437911-12437930 None:intergenic 55.0%
! GTCCTTTTCCTTGGAACCGG+AGG - chr5.1:12434435-12434454 MS.gene010574:CDS 55.0%
!! AATTTTGGCCGCACAGCTGG+AGG - chr5.1:12435456-12435475 MS.gene010574:intron 55.0%
CCGCAACCAAGCTGGCACTT+TGG + chr5.1:12437564-12437583 None:intergenic 60.0%
GCCAACGGCTCTTCTCCTTC+AGG + chr5.1:12437417-12437436 None:intergenic 60.0%
GCGCTTGCCTCCATGGAGAA+AGG + chr5.1:12436643-12436662 None:intergenic 60.0%
GGAACTCCGTTGGGAACCTG+TGG - chr5.1:12437947-12437966 MS.gene010574:CDS 60.0%
GGGTACTCGAGCATGAACCC+TGG - chr5.1:12434354-12434373 MS.gene010574:CDS 60.0%
GGTACCCTGTACCGCGATCT+TGG - chr5.1:12437687-12437706 MS.gene010574:intron 60.0%
GGACAGAGGCTTGGAGTGGC+TGG - chr5.1:12435141-12435160 MS.gene010574:intron 65.0%
GTGGTCCGTCAGCATCCTCC+CGG - chr5.1:12436046-12436065 MS.gene010574:intron 65.0%
! AGGATGCTGACGGACCACGG+AGG + chr5.1:12436044-12436063 None:intergenic 65.0%
! GGGAGGATGCTGACGGACCA+CGG + chr5.1:12436047-12436066 None:intergenic 65.0%
! GACTGGGGCGCTTGCCTCCA+TGG + chr5.1:12436650-12436669 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr5.1 gene 12433584 12438352 12433584 ID=MS.gene010574
chr5.1 mRNA 12433584 12438352 12433584 ID=MS.gene010574.t1;Parent=MS.gene010574
chr5.1 exon 12438290 12438352 12438290 ID=MS.gene010574.t1.exon1;Parent=MS.gene010574.t1
chr5.1 CDS 12438290 12438352 12438290 ID=cds.MS.gene010574.t1;Parent=MS.gene010574.t1
chr5.1 exon 12438093 12438188 12438093 ID=MS.gene010574.t1.exon2;Parent=MS.gene010574.t1
chr5.1 CDS 12438093 12438188 12438093 ID=cds.MS.gene010574.t1;Parent=MS.gene010574.t1
chr5.1 exon 12437881 12437993 12437881 ID=MS.gene010574.t1.exon3;Parent=MS.gene010574.t1
chr5.1 CDS 12437881 12437993 12437881 ID=cds.MS.gene010574.t1;Parent=MS.gene010574.t1
chr5.1 exon 12437717 12437783 12437717 ID=MS.gene010574.t1.exon4;Parent=MS.gene010574.t1
chr5.1 CDS 12437717 12437783 12437717 ID=cds.MS.gene010574.t1;Parent=MS.gene010574.t1
chr5.1 exon 12437281 12437373 12437281 ID=MS.gene010574.t1.exon5;Parent=MS.gene010574.t1
chr5.1 CDS 12437281 12437373 12437281 ID=cds.MS.gene010574.t1;Parent=MS.gene010574.t1
chr5.1 exon 12436976 12437119 12436976 ID=MS.gene010574.t1.exon6;Parent=MS.gene010574.t1
chr5.1 CDS 12436976 12437119 12436976 ID=cds.MS.gene010574.t1;Parent=MS.gene010574.t1
chr5.1 exon 12436774 12436862 12436774 ID=MS.gene010574.t1.exon7;Parent=MS.gene010574.t1
chr5.1 CDS 12436774 12436862 12436774 ID=cds.MS.gene010574.t1;Parent=MS.gene010574.t1
chr5.1 exon 12436582 12436687 12436582 ID=MS.gene010574.t1.exon8;Parent=MS.gene010574.t1
chr5.1 CDS 12436582 12436687 12436582 ID=cds.MS.gene010574.t1;Parent=MS.gene010574.t1
chr5.1 exon 12436408 12436495 12436408 ID=MS.gene010574.t1.exon9;Parent=MS.gene010574.t1
chr5.1 CDS 12436408 12436495 12436408 ID=cds.MS.gene010574.t1;Parent=MS.gene010574.t1
chr5.1 exon 12436085 12436203 12436085 ID=MS.gene010574.t1.exon10;Parent=MS.gene010574.t1
chr5.1 CDS 12436085 12436203 12436085 ID=cds.MS.gene010574.t1;Parent=MS.gene010574.t1
chr5.1 exon 12435836 12436000 12435836 ID=MS.gene010574.t1.exon11;Parent=MS.gene010574.t1
chr5.1 CDS 12435836 12436000 12435836 ID=cds.MS.gene010574.t1;Parent=MS.gene010574.t1
chr5.1 exon 12435493 12435668 12435493 ID=MS.gene010574.t1.exon12;Parent=MS.gene010574.t1
chr5.1 CDS 12435493 12435668 12435493 ID=cds.MS.gene010574.t1;Parent=MS.gene010574.t1
chr5.1 exon 12435210 12435319 12435210 ID=MS.gene010574.t1.exon13;Parent=MS.gene010574.t1
chr5.1 CDS 12435210 12435319 12435210 ID=cds.MS.gene010574.t1;Parent=MS.gene010574.t1
chr5.1 exon 12435018 12435127 12435018 ID=MS.gene010574.t1.exon14;Parent=MS.gene010574.t1
chr5.1 CDS 12435018 12435127 12435018 ID=cds.MS.gene010574.t1;Parent=MS.gene010574.t1
chr5.1 exon 12434815 12434925 12434815 ID=MS.gene010574.t1.exon15;Parent=MS.gene010574.t1
chr5.1 CDS 12434815 12434925 12434815 ID=cds.MS.gene010574.t1;Parent=MS.gene010574.t1
chr5.1 exon 12434621 12434734 12434621 ID=MS.gene010574.t1.exon16;Parent=MS.gene010574.t1
chr5.1 CDS 12434621 12434734 12434621 ID=cds.MS.gene010574.t1;Parent=MS.gene010574.t1
chr5.1 exon 12434335 12434537 12434335 ID=MS.gene010574.t1.exon17;Parent=MS.gene010574.t1
chr5.1 CDS 12434335 12434537 12434335 ID=cds.MS.gene010574.t1;Parent=MS.gene010574.t1
chr5.1 exon 12433912 12434248 12433912 ID=MS.gene010574.t1.exon18;Parent=MS.gene010574.t1
chr5.1 CDS 12433912 12434248 12433912 ID=cds.MS.gene010574.t1;Parent=MS.gene010574.t1
chr5.1 exon 12433584 12433709 12433584 ID=MS.gene010574.t1.exon19;Parent=MS.gene010574.t1
chr5.1 CDS 12433584 12433709 12433584 ID=cds.MS.gene010574.t1;Parent=MS.gene010574.t1
Gene Sequence

>MS.gene010574

ATGGCCAAAGAAGAATCCTTTTTTCTGGTTCCATACATTATCCTAGAAGCACCCCAGATGTATGTTCCTTCTTAATTAAGAAAATCAAAATAAAAATTGAAATTTTACCTTTTTTTCAGTTTGTTTATGATTTTTTTTTGACATATGTAATGACCCTTTTGCAGATGTGGGAAGATCTGATTTTCAAAGCTAAAGAAGGAGGTTTGGATGTAATTGAAACCTATGTGTTTTGGAATGTTCATGAACCTTCTCCTGGAAATGTACTTTACTTTCACACTCTCTTTCTCAAGTTTTTGTTTTTATTTTGCTTAGTTTTGTTTTAATTTGTGTGTATACTGAATGGAATTTGTTCAATGCAGTACAATTTTGAGGGAAGAAATGACCTTGTGAGGTTTATTCAGACAGTGCATAAAGCAGGACTATATGCTCATCTAAGGATTGGACCTTATGTTTGTGCTGAATGGAATTTTGGGTACTTTACTTATTATTATTATCTTGAAAAGTTTGCTGTTTTGGTCTTTTGAGGGGTAATTTTCCATTGTTTAATGATTTTATGTTGTCATGTGCAGAGGTTTTCCTGTTTGGCTCAAGTATGTTCCTGGCATAAGCTTTAGACAAGACAATGAACCTTTCAAGGTTTCTTTCATTTTTTAAGTACTTTCTTCAAAAACATTTTTTGTTAGAACATTGCTTTTTATATATATGACTAGTGAAACCAAATGGTTGAGCTCTAGTGGTTAATGAGCTTCATTGAAGGTAAAATCGATTGGGGGTACTCGAGCATGAACCCTGGAAGAAACAATAATTGGCCAAACTTTATTTATCTCCCGACCAGATTTCAGATTACGAGGGTCCTTTTCCTTGGAACCGGAGGGTTAAGACCAAATATATACATGACTAGTGACAGATTAGAAGGGAATTTATGAAATTCCTTCATTTTTTTCAATTGAAGTAGTTTTTTTAATGAATGGTTTTGCAGAAAGCAATGCAAGGGTTCACTGAGAAAATTGTGGGAATGATGAAGAGCGAACGTCTCTATGAGTCACAGGGTGGCCCTATAATCCTCTCTCAGGCGTGTAACCTTTATTGTTAATTTGCTTTTTGTGTATTTGTAAACTATCAAAGTCCCTTTAATTGTTTTTAGGAAAGGTGCTAATTATGGTAAATTTTTCTTCTAGATCTAGCTTTGTGGCAACAATAATAATGATACATATACACTATATGTTGTTTCAGATTGAGAACGAGTACGGGGTACAGAGTAAAATGCTCGGACCTGTTGGCTATAATTATATGAGCTGGGCTGCGAAAATGGCTGTTGAAATGGGAACTGGGGTTCCATGGATTATGTGCAAGGAAGATGATGCTCCAGATCCAGTGGTAAGCATTCTCATTCTCCCCCTTAAAAGTTATTAACATTATGCACCGGTAACATGTGGTTGCATATTCAGGAATTTGATGGATAAATTTATCTGTTTTCTGTTATGTGACAGATAAACACCTGCAATGGCTTTTATTGTGATAAATTTACTCCCAATAAACCCTACAAGCCTACAATGTGGACAGAGGCTTGGAGTGGCTGGTAATCATTTTTTTAAGTTACTTACTCCCATATTTTGGAATTTCGGAAATGGATTTGCATAATTTTTTCTTTTGCCAAACATGAAGGTTTTCAGAATTCGGAGGTCCAATTCACAAAAGACCTGTTCAGGATTTGGCATTTGCAGTAGCCCGATTTATACAAAAAGGAGGATCCTTTGTAAACTACTACATGGTTGGTTTTCTCATACCGATTTAACAATTGAAAATTTGGTGATGAATTGATGACAGCCACTTGAGTAACTTACTTCGTTCATGCAGTATCATGGAGGAACAAATTTTGGCCGCACAGCTGGAGGTCCTTTTATCACTACCAGCTATGATTATGATGCTCCACTAGATGAATATGGTGAGAGCTGATAGTTCACAAACACTTATGCATGAATTAGCAATTTTGAGTTCTAACCTTGCCACACTTCACTAGACTGAAGTAACACAATATTATTCAATGCTTTCACTTCAAGATTTTGTTGTCACAGCTCACAACAGTATCCATAGGCTACATTGCCGGAGGACTAAACTGACTACTTTTTGTTTCAATAAATATTGACAGGTTTAATTAGGCAACCAAAGTATGGTCATCTAAAGGAGCTTCATAAGGCTATTAAGATGTGTGAGAAAGCTTTAATTTCAACCGACCCAGTTGTTACCTCATTAGGAAACTTCCAACAGGTTAAACTCGCTTTCAAACATTATTTCCTTTCACTGCTCCGTAAGTTCCTTTATTGACACAAGTGGGTATTCATCCTTTCTCAGGCTTATGTATACACCACAGAGTCTGGAGATTGTTCGGCTTTTCTCTCAAACTATGACTCCAAATCTTCTGCAAGAGTGATGTTCAACAATATGCACTATAACTTACCTCCGTGGTCCGTCAGCATCCTCCCGGATTGTAGAAATGCTGTTTTTAACACAGCAAAGGTATGTAACAGAAGCGTCAGACATGAAATCATCATACAACATTGATACTCAACGATCACAATTATGCTTCCTGTACACAATTTATTCACCTTCAACATCTCCATTCATAGAGATTTAACAATTTAGCGTTTTGTTAAACCACTGAATTCATTTTCTCCCTATATTAGGTTGGAGTGCAAACATCTCAAATGCAAATGTTGCCTACAAATAGTGAGAGGTTCTCATGGGAGAGTTTTGAGGAAGATACTTCTTCTAGTTCTGCAACTACAATAACTGCTTCTGGTCTCTTGGAACAGATAAACGTAACGAGGGATACAAGTGATTATCTTTGGTATATAACTAGGTAAGATTCATTTTGTAAGTTGTTTACGTTTGCTCGTTAATTGATGTTGTCATCATCAATTGCCGGAAATTACTTACGCCTTTATATTCCCTAACTAGTTGAAAGTAGAGTCATTCTTTATTTTCATCCCACATACTTCTGTACTAATTTATTTCATGTCAATGTGTCGATAGTGTTGATGTAGGTTCATCTGAATCCTTTCTCCATGGAGGCAAGCGCCCCAGTCTCATTGTTCAGTCAACTGGGCATGCTGTGCATGTTTTCATCAATGGTCGACTTTCCGGTATGTAGTTAGTCTGTTTCTTTAGTAGATCTCACTTCCATCAAAAAGTTAAAGGAAACATGATATATATGATTGAAAACAGGTTCTGCCTATGGAACGAGGGAGGATAGGAGATTCAGATACACTGGCGATGTAAATCTTCGTGCTGGAACAAACACTATAGCTTTGCTCAGTGTTGCTGTTGGACTTCCAGTAAGTTTTGTTTTCTACCTTTATTTTCTGAAATTCTCCTGCAGTACTTAGTACTTACTAATATCATTCATCCGTGTTTTGTGCTGTCAAAGAACGTAGGTGGACATTTCGAGACTTGGAACACAGGAATCCTAGGTCCAGTTGTTATCCATGGACTTGATAAGGGAAAGTTGGACTTGTCTTGGCAGAAATGGACTTACCAGGTTGCTTAATTGTACTTTAGCAGCTTAAGTTGACATAGTTACAAAGAAATTTCAATTAAGATGATCTCTTCTCTAAACAGGTTGGGCTGAAAGGAGAGGCCATGAATCTTGCATCTCCAGACGGTATCTCTTCTGTAGAGTGGATGCAGTCGGCGTTAGTTGTACAAAGAAATCAGCCACTGACATGGCACAAGGTACTAAAAAAGTGCTTAAGATCGACTTAAATAAAATATTTGACCCCAAAAATGATGAAATAACTGATCAGTAAACTTCGCAGACTTTTTTCGATGCTCCTGAAGGAGAAGAGCCGTTGGCATTGGATATGGACGGTATGGGTAAAGGTCAAATATGGATTAATGGGATAAGTATCGGAAGATACTGGACTGCTATAGCTACTGGTAGTTGCAATGACTGCAACTATGCCGGGTCATTTAGACCTCCAAAGTGCCAGCTTGGTTGCGGTCAACCAACTCAGCGATGGTAAGTTTATTTATTCGTTAATTAACATTTTAGGTGATGCATGACTTGGTTAAAAAATACCTAACATGGGTTACTTCATGTTTCAGGTACCCTGTACCGCGATCTTGGTTGAAGCAAAATCATAATCTGTTAGTTGTTTTTGAGGAACTTGGGGGGGACCCTTCAAAAATTTCATTAGCAAAGAGATCAGTGAGCAGTGTGTGCGCTGATGTATCAGAGTATCATCCTAATCTTAAGAATTGGCACATTGATAGTTATGGAAAATCGGAAAATTTCCATCCTCCAAAAGTTCACTTGCATTGTAATCCTGGCCAAGCCATCTCTTCCATTAAATTTGCAAGCTTTGGAACTCCGTTGGGAACCTGTGGGAGTTACGAGCAAGGAGCTTGTCATTCTTCTGCATCTTATGACATCCTAGAGCAGGTAACTCAACCATTTTCTTCATTTAACAATCAAACATTGACTTTTAATATTATAAAAAGTTATATTGTCTCTAGTTCAGTTGCTCAGTGTTAATAGACACTAAATTTGAGACTAATTTTGTTTTTTCCGTCTCTAATTTCTGTCAACTTTATTTTTGGATGATAACATTGCTGATGCTATTTGTTTTTTCATTTTTACACAGAAATGTGTAGGAAAGCCAAGATGCATAGTAACTGTATCAAACAGTAATTTTGGGCGAGACCCGTGTCCAAATGTATTGAAGCGGTTATCAGTTGAAGCTGTTTGCGCTCCGACTATTACCAATTAA
Protein sequence

>MS.gene010574.t1

MAKEESFFLVPYIILEAPQMYMWEDLIFKAKEGGLDVIETYVFWNVHEPSPGNYNFEGRNDLVRFIQTVHKAGLYAHLRIGPYVCAEWNFGGFPVWLKYVPGISFRQDNEPFKKAMQGFTEKIVGMMKSERLYESQGGPIILSQIENEYGVQSKMLGPVGYNYMSWAAKMAVEMGTGVPWIMCKEDDAPDPVINTCNGFYCDKFTPNKPYKPTMWTEAWSGWFSEFGGPIHKRPVQDLAFAVARFIQKGGSFVNYYMYHGGTNFGRTAGGPFITTSYDYDAPLDEYGLIRQPKYGHLKELHKAIKMCEKALISTDPVVTSLGNFQQAYVYTTESGDCSAFLSNYDSKSSARVMFNNMHYNLPPWSVSILPDCRNAVFNTAKVGVQTSQMQMLPTNSERFSWESFEEDTSSSSATTITASGLLEQINVTRDTSDYLWYITSVDVGSSESFLHGGKRPSLIVQSTGHAVHVFINGRLSGSAYGTREDRRFRYTGDVNLRAGTNTIALLSVAVGLPNVGGHFETWNTGILGPVVIHGLDKGKLDLSWQKWTYQVGLKGEAMNLASPDGISSVEWMQSALVVQRNQPLTWHKTFFDAPEGEEPLALDMDGMGKGQIWINGISIGRYWTAIATGSCNDCNYAGSFRPPKCQLGCGQPTQRWYPVPRSWLKQNHNLLVVFEELGGDPSKISLAKRSVSSVCADVSEYHPNLKNWHIDSYGKSENFHPPKVHLHCNPGQAISSIKFASFGTPLGTCGSYEQGACHSSASYDILEQKCVGKPRCIVTVSNSNFGRDPCPNVLKRLSVEAVCAPTITN