AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene59424

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene59424.t1 MTR_5g021190 98.695 843 11 0 1 843 1 843 0.0 1745
MS.gene59424.t1 MTR_8g016230 64.183 832 293 4 9 837 8 837 0.0 1150
MS.gene59424.t1 MTR_2g100110 65.568 819 277 4 22 837 24 840 0.0 1143
MS.gene59424.t1 MTR_3g112370 71.487 733 205 3 1 730 1 732 0.0 1126
MS.gene59424.t1 MTR_1g023120 72.702 729 194 3 1 725 1 728 0.0 1124
MS.gene59424.t1 MTR_1g023120 73.174 671 178 2 56 725 1 670 0.0 1060
MS.gene59424.t1 MTR_1g018200 63.314 706 254 5 22 724 27 730 0.0 956
MS.gene59424.t1 MTR_2g039120 60.331 726 284 4 1 724 3 726 0.0 938
MS.gene59424.t1 MTR_2g094020 55.357 840 338 14 24 843 20 842 0.0 930
MS.gene59424.t1 MTR_2g094060 55.836 831 334 12 24 838 20 833 0.0 927
MS.gene59424.t1 MTR_4g059680 54.225 852 361 12 1 837 1 838 0.0 909
MS.gene59424.t1 MTR_2g094060 55.975 795 318 11 24 802 20 798 0.0 892
MS.gene59424.t1 MTR_2g039120 60.116 692 272 4 1 690 3 692 0.0 892
MS.gene59424.t1 MTR_2g100110 68.551 566 175 2 22 585 24 588 0.0 839
MS.gene59424.t1 MTR_8g085210 49.304 862 385 12 25 843 49 901 0.0 832
MS.gene59424.t1 MTR_2g039120 59.615 624 249 3 1 623 3 624 0.0 795
MS.gene59424.t1 MTR_2g094060 57.016 677 267 8 24 688 20 684 0.0 791
MS.gene59424.t1 MTR_3g096900 53.078 731 325 6 9 723 5 733 0.0 789
MS.gene59424.t1 MTR_2g042610 46.643 849 411 11 6 838 7 829 0.0 774
MS.gene59424.t1 MTR_2g039120 60.410 586 230 2 1 585 3 587 0.0 758
MS.gene59424.t1 MTR_5g025830 46.699 833 396 13 25 837 27 831 0.0 751
MS.gene59424.t1 MTR_5g024080 46.394 832 407 13 18 837 2 806 0.0 746
MS.gene59424.t1 MTR_3g096900 52.722 698 312 6 9 690 5 700 0.0 743
MS.gene59424.t1 MTR_3g117840 42.874 856 438 14 4 838 2 827 0.0 724
MS.gene59424.t1 MTR_4g073290 43.494 853 434 16 6 838 1 825 0.0 718
MS.gene59424.t1 MTR_3g005570 43.562 831 418 11 1 819 1 792 0.0 696
MS.gene59424.t1 MTR_3g096910 49.581 716 326 8 25 734 26 712 0.0 694
MS.gene59424.t1 MTR_3g096900 53.045 624 279 5 9 620 5 626 0.0 665
MS.gene59424.t1 MTR_3g088520 49.381 727 309 17 8 720 6 687 0.0 664
MS.gene59424.t1 MTR_3g088520 49.040 677 288 16 56 720 1 632 0.0 610
MS.gene59424.t1 MTR_3g096910 45.347 591 288 8 150 734 1 562 1.24e-169 503
MS.gene59424.t1 MTR_4g126330 41.748 412 140 9 281 690 131 444 4.74e-88 287
MS.gene59424.t1 MTR_4g126330 72.826 92 25 0 81 172 25 116 2.05e-40 155
MS.gene59424.t1 MTR_5g022590 41.026 312 144 8 43 351 9 283 2.22e-69 236
MS.gene59424.t1 MTR_5g022590 34.211 114 72 2 691 801 305 418 6.94e-13 72.0
MS.gene59424.t1 MTR_3g005610 35.540 287 152 6 429 712 24 280 1.59e-40 152
MS.gene59424.t1 MTR_2g059440 33.798 287 156 6 429 712 24 279 2.67e-37 142
MS.gene59424.t1 MTR_2g100000 31.722 331 183 9 36 334 64 383 6.99e-35 142
MS.gene59424.t1 MTR_2g059430 32.197 264 117 5 449 712 10 211 5.24e-28 113
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene59424.t1 AT4G36360 78.966 832 169 2 9 839 21 847 0.0 1438
MS.gene59424.t1 AT4G36360 78.846 832 169 3 9 839 21 846 0.0 1432
MS.gene59424.t1 AT3G13750 65.783 830 279 4 12 838 20 847 0.0 1150
MS.gene59424.t1 AT1G45130 70.897 725 207 3 6 726 8 732 0.0 1102
MS.gene59424.t1 AT1G45130 70.938 640 185 1 88 726 14 653 0.0 986
MS.gene59424.t1 AT3G52840 62.017 724 266 7 7 725 61 780 0.0 948
MS.gene59424.t1 AT2G28470 56.919 831 334 14 24 838 30 852 0.0 948
MS.gene59424.t1 AT2G28470 56.919 831 334 14 24 838 30 852 0.0 948
MS.gene59424.t1 AT2G28470 56.919 831 334 14 24 838 24 846 0.0 947
MS.gene59424.t1 AT2G28470 56.919 831 334 14 24 838 24 846 0.0 947
MS.gene59424.t1 AT3G52840 62.017 724 266 7 7 725 7 726 0.0 947
MS.gene59424.t1 AT4G26140 61.581 721 268 8 9 725 12 727 0.0 937
MS.gene59424.t1 AT5G56870 62.117 718 265 7 9 724 12 724 0.0 933
MS.gene59424.t1 AT4G26140 59.651 746 267 9 9 725 12 752 0.0 925
MS.gene59424.t1 AT4G26140 59.494 711 254 9 9 690 12 717 0.0 877
MS.gene59424.t1 AT2G32810 49.255 873 397 14 8 840 13 879 0.0 845
MS.gene59424.t1 AT2G28470 58.555 678 261 10 24 688 30 700 0.0 811
MS.gene59424.t1 AT2G32810 49.581 835 375 14 8 802 13 841 0.0 807
MS.gene59424.t1 AT4G26140 61.912 617 227 7 9 622 12 623 0.0 805
MS.gene59424.t1 AT4G26140 61.626 615 230 6 9 622 12 621 0.0 804
MS.gene59424.t1 AT4G26140 61.626 615 230 6 9 622 12 621 0.0 804
MS.gene59424.t1 AT5G63810 52.846 738 334 6 3 728 6 741 0.0 788
MS.gene59424.t1 AT5G20710 47.703 849 401 14 3 837 7 826 0.0 774
MS.gene59424.t1 AT1G77410 48.009 854 384 14 6 838 1 815 0.0 771
MS.gene59424.t1 AT1G77410 47.730 859 384 15 6 838 1 820 0.0 765
MS.gene59424.t1 AT1G31740 46.429 840 371 16 11 837 6 779 0.0 733
MS.gene59424.t1 AT4G26140 63.469 542 191 6 9 547 12 549 0.0 722
MS.gene59424.t1 AT4G26140 60.847 567 190 7 9 547 12 574 0.0 708
MS.gene59424.t1 AT4G26140 60.847 567 190 7 9 547 12 574 0.0 708
MS.gene59424.t1 AT2G16730 42.635 835 434 17 25 843 43 848 0.0 697
MS.gene59424.t1 AT5G63800 48.831 727 340 8 13 735 19 717 0.0 689
MS.gene59424.t1 AT4G35010 41.959 827 441 15 25 838 40 840 0.0 679
MS.gene59424.t1 AT1G77410 47.260 730 329 13 126 838 19 709 0.0 631
MS.gene59424.t1 AT1G77410 47.260 730 329 13 126 838 19 709 0.0 631
MS.gene59424.t1 AT4G38590 41.384 795 425 16 56 837 1 767 0.0 629
MS.gene59424.t1 AT4G38590 39.649 855 455 21 10 837 11 831 0.0 616
MS.gene59424.t1 AT5G20710 43.827 648 323 13 204 837 1 621 5.51e-179 529
MS.gene59424.t1 AT2G04060 36.512 367 159 7 291 657 23 315 9.99e-60 211
MS.gene59424.t1 AT1G72990 34.431 334 174 11 36 336 18 339 1.40e-43 168
MS.gene59424.t1 AT1G72990 34.431 334 174 11 36 336 73 394 2.19e-43 168
MS.gene59424.t1 AT1G72990 34.431 334 174 11 36 336 73 394 2.19e-43 168
MS.gene59424.t1 AT1G72990 34.505 313 160 11 57 336 32 332 6.09e-39 154
MS.gene59424.t1 AT2G04062 39.344 183 70 3 26 198 7 158 5.24e-31 119
MS.gene59424.t1 AT3G53080 37.349 83 50 2 756 837 71 152 1.76e-13 69.3
MS.gene59424.t1 AT3G53075 34.118 85 55 1 756 840 82 165 4.02e-13 68.6
MS.gene59424.t1 AT3G53075 34.118 85 55 1 756 840 112 195 5.30e-13 68.9

Find 212 sgRNAs with CRISPR-Local

Find 376 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTTGTGCTGAATGGAATTT+TGG 0.144864 5.4:-12973586 MS.gene59424:CDS
TCCAAAGCTTGCAAATTTAA+TGG 0.170398 5.4:+12969482 None:intergenic
AACTAATCAGCTCCTTTAAT+TGG 0.192936 5.4:+12969064 None:intergenic
TGTAGGCTTGTAGGGTTTAT+TGG 0.193151 5.4:+12972503 None:intergenic
TTCATCAATGGTCGACTTTC+CGG 0.199118 5.4:-12970703 MS.gene59424:intron
TATCATGGAGGAACAAATTT+TGG 0.222886 5.4:-12972176 MS.gene59424:CDS
TCCATTAAATTTGCAAGCTT+TGG 0.229371 5.4:-12969483 MS.gene59424:CDS
CAAAAGACCTGTTCAGGATT+TGG 0.234447 5.4:-12972341 MS.gene59424:CDS
AAATATTGACAGGTTTAATT+AGG 0.244908 5.4:-12971895 MS.gene59424:intron
AAAGGTCAAATATGGATTAA+TGG 0.245950 5.4:-12969950 MS.gene59424:CDS
ACTGTATCAAACAGTAATTT+TGG 0.253526 5.4:-12969152 MS.gene59424:CDS
TTACAATGCAAGTGAACTTT+TGG 0.264877 5.4:+12969525 None:intergenic
CATACATCTGGGGTGCTTCT+AGG 0.279927 5.4:+12974010 None:intergenic
CTCCGACTATTACCAATTAA+AGG 0.292713 5.4:-12969076 None:intergenic
CATCACTCTGGCAGATGATT+TGG 0.293647 5.4:+12971622 None:intergenic
TGTCCACATTGTAGGCTTGT+AGG 0.299295 5.4:+12972494 None:intergenic
GTAGGCTTGTAGGGTTTATT+GGG 0.318414 5.4:+12972504 None:intergenic
GGGATACAAGTGATTATCTT+TGG 0.320944 5.4:-12971206 MS.gene59424:CDS
TTTCAGATTGAGAACGAGTA+TGG 0.322939 5.4:-12972805 MS.gene59424:intron
TAATTGAAACCTATGTGTTT+TGG 0.325172 5.4:-12973841 MS.gene59424:CDS
TTAATTAGGCAACCAAAGTA+TGG 0.330593 5.4:-12971881 MS.gene59424:CDS
CACACCTGAGAGAGGATTAT+AGG 0.332372 5.4:+12972979 None:intergenic
GTATGGGTAAAGGTCAAATA+TGG 0.336417 5.4:-12969958 MS.gene59424:CDS
TCATAGCTGGTAGTGATAAA+AGG 0.337042 5.4:+12972137 None:intergenic
TCTTTGGCCATTGATGATAA+TGG 0.338833 5.4:+12974063 None:intergenic
GATAACCGCTTCAATACATT+TGG 0.339791 5.4:+12969116 None:intergenic
GTTTGGCTCAAGTATGTTCC+TGG 0.341896 5.4:-12973459 MS.gene59424:CDS
AGAGCCGTTGGCATTGGATA+TGG 0.353181 5.4:-12969984 MS.gene59424:CDS
AAGGTCAAATATGGATTAAT+GGG 0.354570 5.4:-12969949 MS.gene59424:CDS
CAAGCCTCTGTCCACATTGT+AGG 0.368026 5.4:+12972486 None:intergenic
CAAAGCTAAAGAAGGAGGTT+TGG 0.371203 5.4:-12973867 MS.gene59424:CDS
GATGCTCCACTAGATGAATA+TGG 0.376564 5.4:-12972110 MS.gene59424:intron
ACAAGACAATGAACCTTTCA+AGG 0.379762 5.4:-12973424 MS.gene59424:intron
AGTCTCATTGTTCAGTCAAC+CGG 0.380041 5.4:-12970742 MS.gene59424:CDS
TGTTATCCATGGACTTGATA+AGG 0.380836 5.4:-12970347 MS.gene59424:CDS
TTTCCTAATGAGGTAACAAC+TGG 0.386087 5.4:+12971797 None:intergenic
AATTGGCACATTGATAGTTA+TGG 0.387493 5.4:-12969570 MS.gene59424:CDS
CATTGATAGTTATGGAAAAT+CGG 0.389751 5.4:-12969562 MS.gene59424:CDS
CTATATGCTCATCTAAGAAT+TGG 0.393526 5.4:-12973616 MS.gene59424:CDS
GCCAACGGCTCTTCTCCTTC+AGG 0.398081 5.4:+12969995 None:intergenic
ACACCTGAGAGAGGATTATA+GGG 0.401661 5.4:+12972980 None:intergenic
GTCCACATTGTAGGCTTGTA+GGG 0.404490 5.4:+12972495 None:intergenic
GACCCAGTTGTTACCTCATT+AGG 0.404591 5.4:-12971800 MS.gene59424:CDS
TGGACTTGTCTTGGCAGAAA+TGG 0.405615 5.4:-12970318 MS.gene59424:CDS
TGAAAGTAAAGTACATTTCC+AGG 0.406491 5.4:+12973800 None:intergenic
GTAGCCCGATTTATACAAAA+AGG 0.406520 5.4:-12972310 MS.gene59424:CDS
ATCATCCTAATCTTAAGAAT+TGG 0.406667 5.4:-12969587 MS.gene59424:CDS
TATGTATACACCACAGAGTC+TGG 0.408684 5.4:-12971677 MS.gene59424:CDS
AATGTTCATGAACCTTCTCC+TGG 0.408807 5.4:-12973818 MS.gene59424:CDS
GAGAACCTCTCACTATTTGT+AGG 0.413141 5.4:+12971315 None:intergenic
AGAATGCTTACCACTGGATC+TGG 0.416491 5.4:+12972667 None:intergenic
GCAACTACAATCACTGCTTC+TGG 0.417667 5.4:-12971255 MS.gene59424:CDS
TGCAAATTTAATGGAAGAGA+TGG 0.418486 5.4:+12969491 None:intergenic
AATTCACAAAAGACCTGTTC+AGG 0.419782 5.4:-12972347 MS.gene59424:CDS
GTTATCCATGGACTTGATAA+GGG 0.420565 5.4:-12970346 MS.gene59424:CDS
AAAACAGCATTTCTACAATC+CGG 0.424631 5.4:+12971551 None:intergenic
AATCACTGCTTCTGGTCTCT+TGG 0.425257 5.4:-12971247 MS.gene59424:CDS
GGAACATACTTGAGCCAAAC+AGG 0.425899 5.4:+12973462 None:intergenic
GGATAAGTATCGGAAGATAC+TGG 0.430719 5.4:-12969928 MS.gene59424:CDS
ATGGCTGTTGAAATGGGAAC+TGG 0.431844 5.4:-12972724 MS.gene59424:CDS
TTGGCTATAATTATATGAGC+TGG 0.432960 5.4:-12972756 MS.gene59424:CDS
CTCATATAATTATAGCCAAC+AGG 0.433077 5.4:+12972760 None:intergenic
CACAGAGTCTGGAGATTGTT+CGG 0.434462 5.4:-12971666 MS.gene59424:CDS
GGCATTGGATATGGACGGTA+TGG 0.439770 5.4:-12969975 MS.gene59424:CDS
TCCTTTAGATGACCATACTT+TGG 0.441192 5.4:+12971869 None:intergenic
GACTGGGGCGCTTGCCTCCA+TGG 0.441580 5.4:+12970761 None:intergenic
GGTACCATGTACCGCGATCT+TGG 0.443450 5.4:-12969722 MS.gene59424:CDS
TCAAGTCCATGGATAACAAC+TGG 0.444007 5.4:+12970352 None:intergenic
GATACAGTTACTATGCATCT+TGG 0.447161 5.4:+12969167 None:intergenic
ATGTGCCAATTCTTAAGATT+AGG 0.447730 5.4:+12969582 None:intergenic
CTCTAACAGGTTGGGCTGAA+AGG 0.450155 5.4:-12970216 MS.gene59424:intron
GTCTGGAGATGCAAGATTCA+TGG 0.451253 5.4:+12970188 None:intergenic
GACCTTATGTTTGTGCTGAA+TGG 0.451811 5.4:-12973594 MS.gene59424:CDS
TGCAATGACTGCAACTATGC+CGG 0.452021 5.4:-12969884 MS.gene59424:CDS
GCAAATGCCAAATCCTGAAC+AGG 0.454857 5.4:+12972334 None:intergenic
GCAAGCTTTGGAACTCCGTT+GGG 0.457912 5.4:-12969471 MS.gene59424:CDS
CTCATTAGGAAACTTCCAAC+AGG 0.461938 5.4:-12971786 MS.gene59424:intron
GTTCACTTGCATTGTAATCC+TGG 0.466125 5.4:-12969519 MS.gene59424:CDS
AAACAACTGAGAACAATGTA+AGG 0.466165 5.4:+12974113 None:intergenic
ACTTTGTTCATGCAGTATCA+TGG 0.467380 5.4:-12972191 MS.gene59424:intron
TGCAAGCTTTGGAACTCCGT+TGG 0.468131 5.4:-12969472 MS.gene59424:CDS
TAGGTGGACATTTCGAGACT+TGG 0.469028 5.4:-12970393 MS.gene59424:CDS
TTGAAAACAGGTTCTGCCTA+TGG 0.473721 5.4:-12970609 MS.gene59424:intron
TTCCATTCAGCACAAACATA+AGG 0.476231 5.4:+12973592 None:intergenic
AGGAGAAGAGCCGTTGGCAT+TGG 0.476447 5.4:-12969990 MS.gene59424:CDS
AGGGAAAGTTGGACTTGTCT+TGG 0.479897 5.4:-12970327 MS.gene59424:CDS
AAATGGGAACTGGGGTTCCA+TGG 0.487177 5.4:-12972714 MS.gene59424:CDS
GGTTGACTGAACAATGAGAC+TGG 0.488528 5.4:+12970744 None:intergenic
AGTAAAATGCTTGGACCTGT+TGG 0.489122 5.4:-12972775 MS.gene59424:CDS
ATTATCTTTGGTATATAACT+AGG 0.491695 5.4:-12971194 MS.gene59424:intron
ATGGAAGAGATGGCTTGGCC+AGG 0.493929 5.4:+12969501 None:intergenic
AGAAAAGCCATTATCATCAA+TGG 0.494313 5.4:-12974070 MS.gene59424:CDS
CTGTTGGAAGTTTCCTAATG+AGG 0.496460 5.4:+12971787 None:intergenic
CTCCTTTAATTGGTAATAGT+CGG 0.497136 5.4:+12969074 None:intergenic
CGCTTCAATACATTTGGACA+CGG 0.497321 5.4:+12969122 None:intergenic
CAACCAAGCTGGCACTTTGG+AGG 0.500883 5.4:+12969851 None:intergenic
GGAACTCCGTTGGGAACCTG+TGG 0.501954 5.4:-12969462 MS.gene59424:CDS
TGGACTTGATAAGGGAAAGT+TGG 0.502894 5.4:-12970338 MS.gene59424:CDS
ACTTGGAACACAGGAATCCT+AGG 0.504422 5.4:-12970376 MS.gene59424:CDS
AGACCTCCAAAGTGCCAGCT+TGG 0.504856 5.4:-12969854 MS.gene59424:CDS
TAAAGTACATTTCCAGGAGA+AGG 0.507122 5.4:+12973806 None:intergenic
CCTATCCTCCCTCGTTCCAT+AGG 0.507305 5.4:+12970593 None:intergenic
TGGCCCTATAATCCTCTCTC+AGG 0.507906 5.4:-12972983 MS.gene59424:intron
GCTTTGCTCAGTGTTGCTGT+TGG 0.508572 5.4:-12970519 MS.gene59424:CDS
TCATCTAAAGGAGCTTCATA+AGG 0.510452 5.4:-12971858 MS.gene59424:CDS
ACTTTCCCTTATCAAGTCCA+TGG 0.511804 5.4:+12970341 None:intergenic
GAAAACATGCACAGCATGCC+CGG 0.512509 5.4:+12970723 None:intergenic
GGGTTCACTGAGAAAATTGT+GGG 0.515564 5.4:-12973042 MS.gene59424:CDS
TGAACGTCTCTATGAGTCAC+AGG 0.516166 5.4:-12973007 MS.gene59424:CDS
CCGCAACCAAGCTGGCACTT+TGG 0.516505 5.4:+12969848 None:intergenic
TAAACTTACCATCGCTGAGT+TGG 0.516833 5.4:+12969821 None:intergenic
AAACAGCATTTCTACAATCC+GGG 0.519384 5.4:+12971552 None:intergenic
CTAGGTCCAGTTGTTATCCA+TGG 0.519979 5.4:-12970358 MS.gene59424:CDS
CCAAAGTGCCAGCTTGGTTG+CGG 0.522281 5.4:-12969848 MS.gene59424:CDS
GATATGGACGGTATGGGTAA+AGG 0.524506 5.4:-12969968 MS.gene59424:CDS
CCTATGGAACGAGGGAGGAT+AGG 0.527657 5.4:-12970593 MS.gene59424:CDS
ATCTTATGACATCCTAGAGC+AGG 0.529494 5.4:-12969406 MS.gene59424:intron
GCGCTTGCCTCCATGGAGAA+AGG 0.529626 5.4:+12970768 None:intergenic
GTGGTCCGTCAGCATCCTCC+CGG 0.529747 5.4:-12971570 MS.gene59424:CDS
TCCTTGCTCGTAACTCCCAC+AGG 0.529981 5.4:+12969446 None:intergenic
TGGATTAATGGGATAAGTAT+CGG 0.531326 5.4:-12969938 MS.gene59424:CDS
TCATCTGAATCCTTTCTCCA+TGG 0.533331 5.4:-12970778 MS.gene59424:CDS
GGCGATGTAAATCTTCGTGC+TGG 0.533335 5.4:-12970555 MS.gene59424:CDS
CTCTCACCATATTCATCTAG+TGG 0.534089 5.4:+12972104 None:intergenic
ATTTAATGGAAGAGATGGCT+TGG 0.537298 5.4:+12969496 None:intergenic
TACTGGACTGCTATAGCTAC+TGG 0.538077 5.4:-12969911 MS.gene59424:CDS
CAAATAGTGAGAGGTTCTCA+TGG 0.540874 5.4:-12971311 MS.gene59424:CDS
GGTGCTTCTAGGATAATGTA+TGG 0.542014 5.4:+12974021 None:intergenic
TCAACCAAGATCGCGGTACA+TGG 0.542151 5.4:+12969718 None:intergenic
TCTTGTCTAAAGCTTATGCC+AGG 0.547655 5.4:+12973441 None:intergenic
CTACAATGTGGACAGAGGCT+TGG 0.548782 5.4:-12972485 MS.gene59424:CDS
GGACAGAGGCTTGGAGTGGC+TGG 0.550267 5.4:-12972476 MS.gene59424:intron
TGGAGCATCATAGTCATAGC+TGG 0.550681 5.4:+12972124 None:intergenic
GCAATGACTGCAACTATGCC+GGG 0.550704 5.4:-12969883 MS.gene59424:CDS
ATCCTTTGTAAACTACTACA+TGG 0.552138 5.4:-12972284 MS.gene59424:intron
TTCAGATTGAGAACGAGTAT+GGG 0.552659 5.4:-12972804 MS.gene59424:intron
ACCAAAGTATGGTCATCTAA+AGG 0.556252 5.4:-12971870 MS.gene59424:CDS
ATGAACATTCCAAAACACAT+AGG 0.556850 5.4:+12973832 None:intergenic
TCTTCCTTGCACATAATCCA+TGG 0.561005 5.4:+12972697 None:intergenic
TGGCTGTTGAAATGGGAACT+GGG 0.561613 5.4:-12972723 MS.gene59424:CDS
TGGCTATAATTATATGAGCT+GGG 0.564896 5.4:-12972755 MS.gene59424:CDS
ATGGTTGAGTTACCTGCTCT+AGG 0.565522 5.4:+12969394 None:intergenic
TTCTGTAGAGTGGATGCAGT+CGG 0.566147 5.4:-12970157 MS.gene59424:CDS
AGGGAAGAAATGACCTTGTG+AGG 0.567058 5.4:-12973666 MS.gene59424:CDS
TTGGTTGACCGCAACCAAGC+TGG 0.567877 5.4:+12969840 None:intergenic
ATTCAGACAGTACATAAAGC+AGG 0.571846 5.4:-12973640 MS.gene59424:CDS
TCTACAGAAGAGATACCGTC+TGG 0.572481 5.4:+12970171 None:intergenic
CTGTCTGAATAAACCTCACA+AGG 0.573535 5.4:+12973653 None:intergenic
TTGGCAGAAATGGACTTACC+AGG 0.575230 5.4:-12970308 MS.gene59424:intron
AAAATGAAAGAAACCTTGAA+AGG 0.578101 5.4:+12973411 None:intergenic
GGGGTTCAGAGTAAAATGCT+TGG 0.578448 5.4:-12972784 MS.gene59424:CDS
TGGAACAGATAAACGTAACA+AGG 0.578762 5.4:-12971227 MS.gene59424:CDS
GTCTCATTGTTCAGTCAACC+GGG 0.579266 5.4:-12970741 MS.gene59424:CDS
CTTTGGAGGTCTAAATGACC+CGG 0.586826 5.4:+12969865 None:intergenic
GATAGGAGATTCAGATACAC+TGG 0.587998 5.4:-12970576 MS.gene59424:CDS
ACGGTATCTCTTCTGTAGAG+TGG 0.591236 5.4:-12970167 MS.gene59424:CDS
AGTACCTTGTGCCATGTCAG+TGG 0.600254 5.4:+12970111 None:intergenic
GCATTGGATATGGACGGTAT+GGG 0.601630 5.4:-12969974 MS.gene59424:CDS
TCCTGAAGGAGAAGAGCCGT+TGG 0.602178 5.4:-12969996 MS.gene59424:CDS
AAACAGAAATTTGGAAACTG+AGG 0.603430 5.4:+12974147 None:intergenic
CAGGTTCTGCCTATGGAACG+AGG 0.608599 5.4:-12970602 MS.gene59424:CDS
GGGAGGATGCTGACGGACCA+CGG 0.608959 5.4:+12971572 None:intergenic
GTTGACTGAACAATGAGACT+GGG 0.611037 5.4:+12970745 None:intergenic
AGGGTTCACTGAGAAAATTG+TGG 0.611742 5.4:-12973043 MS.gene59424:CDS
CGTGTCCAAATGTATTGAAG+CGG 0.611974 5.4:-12969121 MS.gene59424:CDS
CATATTGTTGAACATCACTC+TGG 0.614278 5.4:+12971610 None:intergenic
CATGGATAACAACTGGACCT+AGG 0.619397 5.4:+12970359 None:intergenic
ACCTGTGGGAGTTACGAGCA+AGG 0.622090 5.4:-12969447 MS.gene59424:CDS
GGTTCCATGGATTATGTGCA+AGG 0.622891 5.4:-12972701 MS.gene59424:CDS
AAATAGTGAGAGGTTCTCAT+GGG 0.625927 5.4:-12971310 MS.gene59424:CDS
TCAGATTGAGAACGAGTATG+GGG 0.627580 5.4:-12972803 MS.gene59424:intron
CATTTCGAGACTTGGAACAC+AGG 0.627929 5.4:-12970385 MS.gene59424:CDS
AAAGTTTACACACCTGAGAG+AGG 0.629106 5.4:+12972971 None:intergenic
GTGCTGTCAAAGAACGTAGG+TGG 0.632196 5.4:-12970409 MS.gene59424:intron
GAACTCCGTTGGGAACCTGT+GGG 0.632994 5.4:-12969461 MS.gene59424:CDS
TGTGTCGATAGTGTTGATGT+AGG 0.635805 5.4:-12970802 MS.gene59424:intron
GCGGTCAACCAACTCAGCGA+TGG 0.636481 5.4:-12969829 MS.gene59424:intron
AACAACTGAGAACAATGTAA+GGG 0.638142 5.4:+12974114 None:intergenic
ATGAATCTTGCATCTCCAGA+CGG 0.639322 5.4:-12970186 MS.gene59424:CDS
TAATGAGGTAACAACTGGGT+CGG 0.642934 5.4:+12971802 None:intergenic
AAAGAAATCAGCCACTGACA+TGG 0.643939 5.4:-12970122 MS.gene59424:CDS
ACAGGTTGGGCTGAAAGGAG+AGG 0.644107 5.4:-12970211 MS.gene59424:intron
ACAATCCGGGAGGATGCTGA+CGG 0.647302 5.4:+12971565 None:intergenic
GGCTGTTGAAATGGGAACTG+GGG 0.648362 5.4:-12972722 MS.gene59424:CDS
TTCTGCCTATGGAACGAGGG+AGG 0.648951 5.4:-12970598 MS.gene59424:CDS
CGAACAATCTCCAGACTCTG+TGG 0.651892 5.4:+12971667 None:intergenic
GCTTCAATACATTTGGACAC+GGG 0.653797 5.4:+12969123 None:intergenic
TAACTCCCACAGGTTCCCAA+CGG 0.655357 5.4:+12969456 None:intergenic
TGACAGATAAACACTTGCAA+TGG 0.655453 5.4:-12972549 MS.gene59424:intron
TCTGAATCCTTTCTCCATGG+AGG 0.655908 5.4:-12970775 MS.gene59424:CDS
AGATGATGCTCCAGATCCAG+TGG 0.655965 5.4:-12972677 MS.gene59424:intron
AACCATGTAGTAGTTTACAA+AGG 0.656727 5.4:+12972282 None:intergenic
CCGTCCATATCCAATGCCAA+CGG 0.663142 5.4:+12969980 None:intergenic
TGTTGCCTACAAATAGTGAG+AGG 0.667469 5.4:-12971320 MS.gene59424:CDS
CCGTTGGCATTGGATATGGA+CGG 0.668995 5.4:-12969980 MS.gene59424:CDS
TCAGCCACTGACATGGCACA+AGG 0.674579 5.4:-12970115 MS.gene59424:intron
GGAACAGATAAACGTAACAA+GGG 0.678072 5.4:-12971226 MS.gene59424:CDS
AGGTTCTGCCTATGGAACGA+GGG 0.683437 5.4:-12970601 MS.gene59424:CDS
AACCCTACAAGCCTACAATG+TGG 0.692362 5.4:-12972497 MS.gene59424:CDS
CAAGCCTACAATGTGGACAG+AGG 0.694525 5.4:-12972490 MS.gene59424:CDS
TGCACTATAACTTACCTCCG+TGG 0.705990 5.4:-12971589 MS.gene59424:CDS
TAAAAGGACCTCCAGCTGTG+CGG 0.707061 5.4:+12972153 None:intergenic
TTGTTCATGCAGTATCATGG+AGG 0.707548 5.4:-12972188 MS.gene59424:intron
TTCCTAATGAGGTAACAACT+GGG 0.708927 5.4:+12971798 None:intergenic
GAACGTCTCTATGAGTCACA+GGG 0.714444 5.4:-12973006 MS.gene59424:CDS
TTAGAAGGAACATACATCTG+GGG 0.714681 5.4:+12974000 None:intergenic
ATGTGGACAGAGGCTTGGAG+TGG 0.718389 5.4:-12972480 MS.gene59424:CDS
TTTGTGCTGTCAAAGAACGT+AGG 0.718616 5.4:-12970412 MS.gene59424:intron
TTGACTGAACAATGAGACTG+GGG 0.727456 5.4:+12970746 None:intergenic
CAGCATTTCTACAATCCGGG+AGG 0.731201 5.4:+12971555 None:intergenic
CGTCTCTATGAGTCACAGGG+TGG 0.740354 5.4:-12973003 MS.gene59424:CDS
AGGATGCTGACGGACCACGG+AGG 0.817951 5.4:+12971575 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AGTTTTTTTTTTTAAATGAA+TGG - chr5.4:12970151-12970170 MS.gene59424:CDS 10.0%
!! AACATAAAATCATTAAACAA+TGG + chr5.4:12969736-12969755 None:intergenic 15.0%
!! TATTTCAATTGAAAAAATGA+AGG + chr5.4:12970132-12970151 None:intergenic 15.0%
!!! ATAATGTTAATAACTTTTGA+GGG + chr5.4:12970603-12970622 None:intergenic 15.0%
!!! ATTGATTTTCTTAATTTAGA+AGG + chr5.4:12969254-12969273 None:intergenic 15.0%
!!! CTTTTCTAAAAACAATTAAA+GGG + chr5.4:12970333-12970352 None:intergenic 15.0%
!!! TATTCGTTAATTAACATTTT+AGG - chr5.4:12973440-12973459 MS.gene59424:CDS 15.0%
!!! TTTTCTAAAAACAATTAAAG+GGG + chr5.4:12970332-12970351 None:intergenic 15.0%
!! AAATATTGACAGGTTTAATT+AGG - chr5.4:12971341-12971360 MS.gene59424:CDS 20.0%
!! AACAAAAAGAAACAGAAATT+TGG + chr5.4:12969101-12969120 None:intergenic 20.0%
!! AGTAGAATTTCAGAAAATAA+AGG + chr5.4:12972767-12972786 None:intergenic 20.0%
!! ATTATCTTTGGTATATAACT+AGG - chr5.4:12972042-12972061 MS.gene59424:intron 20.0%
!! TCACTAGTCATATTTATATT+TGG + chr5.4:12970083-12970102 None:intergenic 20.0%
!! TGATATATATGATTGAAAAC+AGG - chr5.4:12972615-12972634 MS.gene59424:intron 20.0%
!! TGATTGTTAAATGAAGAAAA+TGG + chr5.4:12973864-12973883 None:intergenic 20.0%
!! TTGTTACAATAAATATTGAC+AGG - chr5.4:12971331-12971350 MS.gene59424:CDS 20.0%
!!! ATCAGTTATTTCATCATTTT+TGG + chr5.4:12973191-12973210 None:intergenic 20.0%
!!! ATTTCTGTCAACTTTATTTT+TGG - chr5.4:12973987-12974006 MS.gene59424:intron 20.0%
!!! CATAATGTTAATAACTTTTG+AGG + chr5.4:12970604-12970623 None:intergenic 20.0%
!!! CCTTTAATTGTTTTTAGAAA+AGG - chr5.4:12970331-12970350 MS.gene59424:CDS 20.0%
!!! CCTTTTCTAAAAACAATTAA+AGG + chr5.4:12970334-12970353 None:intergenic 20.0%
!!! TAATGTTAATAACTTTTGAG+GGG + chr5.4:12970602-12970621 None:intergenic 20.0%
!!! TCAGTTATTTCATCATTTTT+GGG + chr5.4:12973190-12973209 None:intergenic 20.0%
!!! TTGCTAATGAAATTTTTGAA+GGG + chr5.4:12973590-12973609 None:intergenic 20.0%
!!! TTTGCTAATGAAATTTTTGA+AGG + chr5.4:12973591-12973610 None:intergenic 20.0%
! AAAATGAAAGAAACCTTGAA+AGG + chr5.4:12969828-12969847 None:intergenic 25.0%
! AAGTTATTAACATTATGCAC+CGG - chr5.4:12970607-12970626 MS.gene59424:intron 25.0%
! AATTGTTAAATCTCGTTGAA+TGG + chr5.4:12971824-12971843 None:intergenic 25.0%
! ATCATCCTAATCTTAAGAAT+TGG - chr5.4:12973649-12973668 MS.gene59424:CDS 25.0%
! GGTTAAAAAATACCTAACAT+GGG - chr5.4:12973476-12973495 MS.gene59424:intron 25.0%
! TAATTTCTGTGTATACTGAA+TGG - chr5.4:12969521-12969540 MS.gene59424:CDS 25.0%
! TCACAAACAAACTGAAAAAA+AGG + chr5.4:12969295-12969314 None:intergenic 25.0%
! TGATTTAACAATCGACAATT+TGG - chr5.4:12970990-12971009 MS.gene59424:intron 25.0%
! TGGTTAAAAAATACCTAACA+TGG - chr5.4:12973475-12973494 MS.gene59424:intron 25.0%
!! AAAGGTCAAATATGGATTAA+TGG - chr5.4:12973286-12973305 MS.gene59424:intron 25.0%
!! AAGGTCAAATATGGATTAAT+GGG - chr5.4:12973287-12973306 MS.gene59424:intron 25.0%
!! AATTACTTACTCCCATATTT+TGG - chr5.4:12970797-12970816 MS.gene59424:intron 25.0%
!! ACTGTATCAAACAGTAATTT+TGG - chr5.4:12974084-12974103 MS.gene59424:CDS 25.0%
!! ATCCTCCTTTTTGTATAAAT+CGG + chr5.4:12970934-12970953 None:intergenic 25.0%
!! ATTCATTTTCTCCCTATATT+AGG - chr5.4:12971866-12971885 MS.gene59424:CDS 25.0%
!! ATTTTTACACAGAAATGTGT+AGG - chr5.4:12974042-12974061 MS.gene59424:CDS 25.0%
!! CATTGATAGTTATGGAAAAT+CGG - chr5.4:12973674-12973693 MS.gene59424:CDS 25.0%
!! CTGTATCAAACAGTAATTTT+GGG - chr5.4:12974085-12974104 MS.gene59424:CDS 25.0%
!! TAATTGAAACCTATGTGTTT+TGG - chr5.4:12969395-12969414 MS.gene59424:intron 25.0%
!! TTTTCTTTTGTCAAACATGA+AGG - chr5.4:12970846-12970865 MS.gene59424:intron 25.0%
!!! AATGTTAATAACTTTTGAGG+GGG + chr5.4:12970601-12970620 None:intergenic 25.0%
!!! CAGTTATTTCATCATTTTTG+GGG + chr5.4:12973189-12973208 None:intergenic 25.0%
!!! TAATCTGTTAGTTGTTTTTG+AGG - chr5.4:12973551-12973570 MS.gene59424:intron 25.0%
!!! TAGAAATGCTGTTTTTAACA+CGG - chr5.4:12971693-12971712 MS.gene59424:intron 25.0%
!!! TGTTTCCTTTAACTTTTTGA+TGG + chr5.4:12972595-12972614 None:intergenic 25.0%
!!! TTTAGAAAAGGTGCTAATTA+TGG - chr5.4:12970343-12970362 MS.gene59424:CDS 25.0%
AAAACAGCATTTCTACAATC+CGG + chr5.4:12971688-12971707 None:intergenic 30.0%
AAACAACTGAGAACAATGTA+AGG + chr5.4:12969126-12969145 None:intergenic 30.0%
AAACAGAAATTTGGAAACTG+AGG + chr5.4:12969092-12969111 None:intergenic 30.0%
AACAAAGTAAGTTACTCAAG+TGG + chr5.4:12971033-12971052 None:intergenic 30.0%
AACAACTGAGAACAATGTAA+GGG + chr5.4:12969125-12969144 None:intergenic 30.0%
AACCATGTAGTAGTTTACAA+AGG + chr5.4:12970957-12970976 None:intergenic 30.0%
AAGGTGAATAAATTGAGTAC+AGG + chr5.4:12971793-12971812 None:intergenic 30.0%
AAGTTGACAGAAATTAGAGA+CGG + chr5.4:12973981-12974000 None:intergenic 30.0%
AATGTATGGAACCAGAAAAA+AGG + chr5.4:12969204-12969223 None:intergenic 30.0%
AGAAAAGCCATTATCATCAA+TGG - chr5.4:12969166-12969185 MS.gene59424:CDS 30.0%
AGGTAGAAAACAAAACTTAC+TGG + chr5.4:12972747-12972766 None:intergenic 30.0%
ATATCCACTTGTGTCAATAA+AGG + chr5.4:12971522-12971541 None:intergenic 30.0%
ATATGACTAGTGAAACCAAA+TGG - chr5.4:12969898-12969917 MS.gene59424:CDS 30.0%
ATCCTTTGTAAACTACTACA+TGG - chr5.4:12970952-12970971 MS.gene59424:intron 30.0%
ATGAACATTCCAAAACACAT+AGG + chr5.4:12969407-12969426 None:intergenic 30.0%
ATGTGCCAATTCTTAAGATT+AGG + chr5.4:12973657-12973676 None:intergenic 30.0%
ATTTAGAAGGAACATACATC+TGG + chr5.4:12969241-12969260 None:intergenic 30.0%
ATTTCCGCTAATCCAAAATA+TGG + chr5.4:12970812-12970831 None:intergenic 30.0%
CACTTCCATCAAAAAGTTAA+AGG - chr5.4:12972587-12972606 MS.gene59424:intron 30.0%
CAGAAAAAAGGATTCTTCTT+TGG + chr5.4:12969192-12969211 None:intergenic 30.0%
CTATATGCTCATCTAAGAAT+TGG - chr5.4:12969620-12969639 MS.gene59424:CDS 30.0%
CTCATATAATTATAGCCAAC+AGG + chr5.4:12970479-12970498 None:intergenic 30.0%
TCCAAAGCTTGCAAATTTAA+TGG + chr5.4:12973757-12973776 None:intergenic 30.0%
TCCATTAAATTTGCAAGCTT+TGG - chr5.4:12973753-12973772 MS.gene59424:intron 30.0%
TGAAAGTAAAGTACATTTCC+AGG + chr5.4:12969439-12969458 None:intergenic 30.0%
TGCAAATTTAATGGAAGAGA+TGG + chr5.4:12973748-12973767 None:intergenic 30.0%
TGGATTAATGGGATAAGTAT+CGG - chr5.4:12973298-12973317 MS.gene59424:intron 30.0%
TGGCTATAATTATATGAGCT+GGG - chr5.4:12970481-12970500 MS.gene59424:intron 30.0%
TGTGTCAATAAAGGAACTTA+AGG + chr5.4:12971513-12971532 None:intergenic 30.0%
TTAATTAGGCAACCAAAGTA+TGG - chr5.4:12971355-12971374 MS.gene59424:intron 30.0%
TTGGCTATAATTATATGAGC+TGG - chr5.4:12970480-12970499 MS.gene59424:intron 30.0%
TTTAGAAGCTAAAGAACCTT+AGG + chr5.4:12972375-12972394 None:intergenic 30.0%
TTTAGAAGGAACATACATCT+GGG + chr5.4:12969240-12969259 None:intergenic 30.0%
TTTCCGCTAATCCAAAATAT+GGG + chr5.4:12970811-12970830 None:intergenic 30.0%
TTTGTAAACTACTACATGGT+TGG - chr5.4:12970956-12970975 MS.gene59424:intron 30.0%
! AAATCTTGAAGTGAAAGCAT+TGG + chr5.4:12971248-12971267 None:intergenic 30.0%
! AATTGGCACATTGATAGTTA+TGG - chr5.4:12973666-12973685 MS.gene59424:CDS 30.0%
! ACATGAAGGTTTTCAGAATT+CGG - chr5.4:12970860-12970879 MS.gene59424:intron 30.0%
! ACTCTACTTTCAACTAGTTT+GGG + chr5.4:12972155-12972174 None:intergenic 30.0%
! ATAAAGGCGTAAGTAATTTC+CGG + chr5.4:12972129-12972148 None:intergenic 30.0%
! ATTTTCAAAGCTAAAGAAGG+AGG - chr5.4:12969364-12969383 MS.gene59424:intron 30.0%
! ATTTTCTCCCTATATTAGGT+TGG - chr5.4:12971870-12971889 MS.gene59424:CDS 30.0%
! CAACTAGTTTGGGAATATAA+AGG + chr5.4:12972145-12972164 None:intergenic 30.0%
! CTGATTTTCAAAGCTAAAGA+AGG - chr5.4:12969361-12969380 MS.gene59424:intron 30.0%
! TATCATGGAGGAACAAATTT+TGG - chr5.4:12971060-12971079 MS.gene59424:intron 30.0%
! TCAATGCAGTACAATTTTGA+GGG - chr5.4:12969551-12969570 MS.gene59424:CDS 30.0%
! TCCTCCTTTTTGTATAAATC+GGG + chr5.4:12970933-12970952 None:intergenic 30.0%
! TTACAATGCAAGTGAACTTT+TGG + chr5.4:12973714-12973733 None:intergenic 30.0%
! TTCAATGCAGTACAATTTTG+AGG - chr5.4:12969550-12969569 MS.gene59424:CDS 30.0%
! TTTGTGCTGAATGGAATTTT+GGG - chr5.4:12969651-12969670 MS.gene59424:CDS 30.0%
!! CTTAAGTTGACATAGTTACA+AGG - chr5.4:12972973-12972992 MS.gene59424:intron 30.0%
!!! ACATTTTGACTGAATTCCTA+AGG - chr5.4:12972356-12972375 MS.gene59424:CDS 30.0%
!!! CAAAGAAGAATCCTTTTTTC+TGG - chr5.4:12969190-12969209 MS.gene59424:intron 30.0%
!!! TAGTTGTTTTTGAGGAACTT+GGG - chr5.4:12973559-12973578 MS.gene59424:intron 30.0%
!!! TCTTGAAAAGTTTGCTGTTT+TGG - chr5.4:12969691-12969710 MS.gene59424:CDS 30.0%
!!! TTAGTTGTTTTTGAGGAACT+TGG - chr5.4:12973558-12973577 MS.gene59424:intron 30.0%
AAACAGCATTTCTACAATCC+GGG + chr5.4:12971687-12971706 None:intergenic 35.0%
AAATAGTGAGAGGTTCTCAT+GGG - chr5.4:12971926-12971945 MS.gene59424:intron 35.0%
AACATGAAGTAACCCATGTT+AGG + chr5.4:12973491-12973510 None:intergenic 35.0%
AAGATGATCTCTTCTCTAAC+AGG - chr5.4:12973007-12973026 MS.gene59424:CDS 35.0%
AATATGCAACCACATGTTAC+CGG + chr5.4:12970629-12970648 None:intergenic 35.0%
AATTCACAAAAGACCTGTTC+AGG - chr5.4:12970889-12970908 MS.gene59424:intron 35.0%
ACAAGACAATGAACCTTTCA+AGG - chr5.4:12969812-12969831 MS.gene59424:intron 35.0%
ACCAAAGTATGGTCATCTAA+AGG - chr5.4:12971366-12971385 MS.gene59424:intron 35.0%
ACTGAAGGTCAAATTGATTG+GGG - chr5.4:12969947-12969966 MS.gene59424:CDS 35.0%
ACTTTGTTCATGCAGTATCA+TGG - chr5.4:12971045-12971064 MS.gene59424:intron 35.0%
AGTTCCTTTATTGACACAAG+TGG - chr5.4:12971515-12971534 MS.gene59424:intron 35.0%
ATATCAACCACTTGATTCCA+TGG + chr5.4:12972290-12972309 None:intergenic 35.0%
ATGACTAGTGACAGATTAGA+AGG - chr5.4:12970092-12970111 MS.gene59424:intron 35.0%
ATGTTGTCATCATCAATTGC+CGG - chr5.4:12972107-12972126 MS.gene59424:intron 35.0%
ATTCAGACAGTACATAAAGC+AGG - chr5.4:12969596-12969615 MS.gene59424:CDS 35.0%
ATTTAATGGAAGAGATGGCT+TGG + chr5.4:12973743-12973762 None:intergenic 35.0%
CACTGAAGGTCAAATTGATT+GGG - chr5.4:12969946-12969965 MS.gene59424:CDS 35.0%
CATATTGTTGAACATCACTC+TGG + chr5.4:12971629-12971648 None:intergenic 35.0%
GAAACAGACTAACTACATAC+CGG + chr5.4:12972555-12972574 None:intergenic 35.0%
GACTCTACTTTCAACTAGTT+TGG + chr5.4:12972156-12972175 None:intergenic 35.0%
GATAACCGCTTCAATACATT+TGG + chr5.4:12974123-12974142 None:intergenic 35.0%
GATACAGTTACTATGCATCT+TGG + chr5.4:12974072-12974091 None:intergenic 35.0%
GCAAAAATGGCTGTTGAAAT+GGG - chr5.4:12970506-12970525 MS.gene59424:intron 35.0%
GGAACAGATAAACGTAACAA+GGG - chr5.4:12972010-12972029 MS.gene59424:intron 35.0%
GGGATACAAGTGATTATCTT+TGG - chr5.4:12972030-12972049 MS.gene59424:intron 35.0%
GTAGCCCGATTTATACAAAA+AGG - chr5.4:12970926-12970945 MS.gene59424:intron 35.0%
GTATGGGTAAAGGTCAAATA+TGG - chr5.4:12973278-12973297 MS.gene59424:intron 35.0%
GTTATCCATGGACTTGATAA+GGG - chr5.4:12972890-12972909 MS.gene59424:intron 35.0%
TAAAGTACATTTCCAGGAGA+AGG + chr5.4:12969433-12969452 None:intergenic 35.0%
TAAAGTACGATTAAGCAACC+TGG + chr5.4:12972949-12972968 None:intergenic 35.0%
TAACATGTGGTTGCATATTC+AGG - chr5.4:12970630-12970649 MS.gene59424:intron 35.0%
TAGGGAGAAAATGAATTCAG+TGG + chr5.4:12971862-12971881 None:intergenic 35.0%
TCACTGAAGGTCAAATTGAT+TGG - chr5.4:12969945-12969964 MS.gene59424:CDS 35.0%
TCATCTAAAGGAGCTTCATA+AGG - chr5.4:12971378-12971397 MS.gene59424:intron 35.0%
TCCTTTAGATGACCATACTT+TGG + chr5.4:12971370-12971389 None:intergenic 35.0%
TCGTTAATAAGCTTCACTGA+AGG - chr5.4:12969932-12969951 MS.gene59424:CDS 35.0%
TGACAGATAAACACTTGCAA+TGG - chr5.4:12970687-12970706 MS.gene59424:intron 35.0%
TGACTAGTGACAGATTAGAA+GGG - chr5.4:12970093-12970112 MS.gene59424:intron 35.0%
TGCAAAAATGGCTGTTGAAA+TGG - chr5.4:12970505-12970524 MS.gene59424:intron 35.0%
TGGAACAGATAAACGTAACA+AGG - chr5.4:12972009-12972028 MS.gene59424:intron 35.0%
TGGTTGCATATTCAGGAATT+TGG - chr5.4:12970637-12970656 MS.gene59424:intron 35.0%
TGTATACATAAGCCTGAGAA+AGG + chr5.4:12971549-12971568 None:intergenic 35.0%
TGTTATCCATGGACTTGATA+AGG - chr5.4:12972889-12972908 MS.gene59424:intron 35.0%
TTAGAAGGAACATACATCTG+GGG + chr5.4:12969239-12969258 None:intergenic 35.0%
TTCAGATTGAGAACGAGTAT+GGG - chr5.4:12970432-12970451 MS.gene59424:intron 35.0%
TTCCATTCAGCACAAACATA+AGG + chr5.4:12969647-12969666 None:intergenic 35.0%
TTCCTAATGAGGTAACAACT+GGG + chr5.4:12971441-12971460 None:intergenic 35.0%
TTCTTTGACAGCACAAAACA+CGG + chr5.4:12972821-12972840 None:intergenic 35.0%
TTGCACTCCAACCTAATATA+GGG + chr5.4:12971880-12971899 None:intergenic 35.0%
TTTCAGATTGAGAACGAGTA+TGG - chr5.4:12970431-12970450 MS.gene59424:intron 35.0%
TTTCCTAATGAGGTAACAAC+TGG + chr5.4:12971442-12971461 None:intergenic 35.0%
TTTGCACTCCAACCTAATAT+AGG + chr5.4:12971881-12971900 None:intergenic 35.0%
! GCCAATTATTGTTTCTTCCA+GGG + chr5.4:12969989-12970008 None:intergenic 35.0%
! GTTTGTGCTGAATGGAATTT+TGG - chr5.4:12969650-12969669 MS.gene59424:CDS 35.0%
! TCATAGCTGGTAGTGATAAA+AGG + chr5.4:12971102-12971121 None:intergenic 35.0%
! TCTTTGGCCATTGATGATAA+TGG + chr5.4:12969176-12969195 None:intergenic 35.0%
! TGAACAGGTCTTTTGTGAAT+TGG + chr5.4:12970890-12970909 None:intergenic 35.0%
! TTTTATGTTGTCATGTGCAG+AGG - chr5.4:12969747-12969766 MS.gene59424:intron 35.0%
! TTTTGCAGAAAGCAATGCAA+GGG - chr5.4:12970174-12970193 MS.gene59424:CDS 35.0%
!! ACTCCCATATTTTGGATTAG+CGG - chr5.4:12970805-12970824 MS.gene59424:intron 35.0%
!! ATTTTAGGTGATGCATGACT+TGG - chr5.4:12973455-12973474 MS.gene59424:CDS 35.0%
!!! AGTTGTTTTTGAGGAACTTG+GGG - chr5.4:12973560-12973579 MS.gene59424:intron 35.0%
!!! TTGCTGTTTTGGTCTTTTGA+GGG - chr5.4:12969702-12969721 MS.gene59424:CDS 35.0%
!!! TTTGCTGTTTTGGTCTTTTG+AGG - chr5.4:12969701-12969720 MS.gene59424:CDS 35.0%
AAAGAAATCAGCCACTGACA+TGG - chr5.4:12973114-12973133 MS.gene59424:intron 40.0%
AAAGTTTACACACCTGAGAG+AGG + chr5.4:12970268-12970287 None:intergenic 40.0%
AAGTAGTCAGTTTAGTCCTC+CGG + chr5.4:12971310-12971329 None:intergenic 40.0%
AATGTTCATGAACCTTCTCC+TGG - chr5.4:12969418-12969437 MS.gene59424:CDS 40.0%
ACACCTGAGAGAGGATTATA+GGG + chr5.4:12970259-12970278 None:intergenic 40.0%
ACAGTCATTGTCGATGTATG+TGG + chr5.4:12972195-12972214 None:intergenic 40.0%
ACTTTCCCTTATCAAGTCCA+TGG + chr5.4:12972898-12972917 None:intergenic 40.0%
AGAATGAGAATGCTTACCAC+TGG + chr5.4:12970578-12970597 None:intergenic 40.0%
AGGGTTCACTGAGAAAATTG+TGG - chr5.4:12970193-12970212 MS.gene59424:CDS 40.0%
AGTAAAATGCTTGGACCTGT+TGG - chr5.4:12970461-12970480 MS.gene59424:intron 40.0%
AGTCTCATTGTTCAGTCAAC+CGG - chr5.4:12972494-12972513 MS.gene59424:CDS 40.0%
ATCTTATGACATCCTAGAGC+AGG - chr5.4:12973830-12973849 MS.gene59424:CDS 40.0%
ATCTTCCCACATCTGCAAAA+GGG + chr5.4:12969341-12969360 None:intergenic 40.0%
ATGAATCTTGCATCTCCAGA+CGG - chr5.4:12973050-12973069 MS.gene59424:CDS 40.0%
CAAAAGACCTGTTCAGGATT+TGG - chr5.4:12970895-12970914 MS.gene59424:intron 40.0%
CAAAGCTAAAGAAGGAGGTT+TGG - chr5.4:12969369-12969388 MS.gene59424:intron 40.0%
CAAATAGTGAGAGGTTCTCA+TGG - chr5.4:12971925-12971944 MS.gene59424:intron 40.0%
CAGTCATTGTCGATGTATGT+GGG + chr5.4:12972194-12972213 None:intergenic 40.0%
CGCTTCAATACATTTGGACA+CGG + chr5.4:12974117-12974136 None:intergenic 40.0%
CGTGTCCAAATGTATTGAAG+CGG - chr5.4:12974115-12974134 MS.gene59424:CDS 40.0%
CTCATTAGGAAACTTCCAAC+AGG - chr5.4:12971450-12971469 MS.gene59424:intron 40.0%
CTCTCACCATATTCATCTAG+TGG + chr5.4:12971135-12971154 None:intergenic 40.0%
CTGAAGGTCAAATTGATTGG+GGG - chr5.4:12969948-12969967 MS.gene59424:CDS 40.0%
CTGTCTGAATAAACCTCACA+AGG + chr5.4:12969586-12969605 None:intergenic 40.0%
CTGTTGGAAGTTTCCTAATG+AGG + chr5.4:12971452-12971471 None:intergenic 40.0%
GACCTTATGTTTGTGCTGAA+TGG - chr5.4:12969642-12969661 MS.gene59424:CDS 40.0%
GAGAACCTCTCACTATTTGT+AGG + chr5.4:12971924-12971943 None:intergenic 40.0%
GATAGGAGATTCAGATACAC+TGG - chr5.4:12972660-12972679 MS.gene59424:intron 40.0%
GATCTCTTCTCTAACAGGTT+GGG - chr5.4:12973012-12973031 MS.gene59424:CDS 40.0%
GATGCTCCACTAGATGAATA+TGG - chr5.4:12971126-12971145 MS.gene59424:intron 40.0%
GATTTCATGTCTGACACTTC+TGG + chr5.4:12971731-12971750 None:intergenic 40.0%
GCCCGATTTATACAAAAAGG+AGG - chr5.4:12970929-12970948 MS.gene59424:intron 40.0%
GCCCTGGAAGAAACAATAAT+TGG - chr5.4:12969985-12970004 MS.gene59424:CDS 40.0%
GCTTCAATACATTTGGACAC+GGG + chr5.4:12974116-12974135 None:intergenic 40.0%
GGAACTTAAGGAACAGTGAA+AGG + chr5.4:12971501-12971520 None:intergenic 40.0%
GGGTTCACTGAGAAAATTGT+GGG - chr5.4:12970194-12970213 MS.gene59424:CDS 40.0%
GTAGGCTTGTAGGGTTTATT+GGG + chr5.4:12970735-12970754 None:intergenic 40.0%
GTCGGGAGGTAAATAAAGTT+TGG + chr5.4:12970011-12970030 None:intergenic 40.0%
GTGGATATTCATCCTTTCTC+AGG - chr5.4:12971534-12971553 MS.gene59424:intron 40.0%
GTTCACTTGCATTGTAATCC+TGG - chr5.4:12973717-12973736 MS.gene59424:intron 40.0%
GTTGACTGAACAATGAGACT+GGG + chr5.4:12972494-12972513 None:intergenic 40.0%
TAAACTTACCATCGCTGAGT+TGG + chr5.4:12973418-12973437 None:intergenic 40.0%
TAATGAGGTAACAACTGGGT+CGG + chr5.4:12971437-12971456 None:intergenic 40.0%
TACTTCGTTCTAGTGAAGTG+TGG + chr5.4:12971213-12971232 None:intergenic 40.0%
TATGTATACACCACAGAGTC+TGG - chr5.4:12971559-12971578 MS.gene59424:CDS 40.0%
TCAAGTCCATGGATAACAAC+TGG + chr5.4:12972887-12972906 None:intergenic 40.0%
TCAGATTGAGAACGAGTATG+GGG - chr5.4:12970433-12970452 MS.gene59424:intron 40.0%
TCATCTGAATCCTTTCTCCA+TGG - chr5.4:12972458-12972477 MS.gene59424:intron 40.0%
TCGTTGAATGGAGATGTTGA+AGG + chr5.4:12971812-12971831 None:intergenic 40.0%
TCTTCCTTGCACATAATCCA+TGG + chr5.4:12970542-12970561 None:intergenic 40.0%
TGAAAGCGAGTTTAACCTGT+TGG + chr5.4:12971468-12971487 None:intergenic 40.0%
TGAAGGTCAAATTGATTGGG+GGG - chr5.4:12969949-12969968 MS.gene59424:CDS 40.0%
TGATCTCTTCTCTAACAGGT+TGG - chr5.4:12973011-12973030 MS.gene59424:CDS 40.0%
TGGACTTGATAAGGGAAAGT+TGG - chr5.4:12972898-12972917 MS.gene59424:intron 40.0%
TGTAGGCTTGTAGGGTTTAT+TGG + chr5.4:12970736-12970755 None:intergenic 40.0%
TGTTGCCTACAAATAGTGAG+AGG - chr5.4:12971916-12971935 MS.gene59424:intron 40.0%
TTGAAAACAGGTTCTGCCTA+TGG - chr5.4:12972627-12972646 MS.gene59424:intron 40.0%
TTGACTGAACAATGAGACTG+GGG + chr5.4:12972493-12972512 None:intergenic 40.0%
TTGTTCATGCAGTATCATGG+AGG - chr5.4:12971048-12971067 MS.gene59424:intron 40.0%
TTTGTGCTGTCAAAGAACGT+AGG - chr5.4:12972824-12972843 MS.gene59424:intron 40.0%
! AATGACCCTTTTGCAGATGT+GGG - chr5.4:12969333-12969352 MS.gene59424:intron 40.0%
! CAATGCAAGTGAACTTTTGG+AGG + chr5.4:12973711-12973730 None:intergenic 40.0%
! CATGGGTTACTTCATGTTTC+AGG - chr5.4:12973493-12973512 MS.gene59424:intron 40.0%
! CTCGTAATCTGAAATCTGGT+CGG + chr5.4:12970029-12970048 None:intergenic 40.0%
! GCTGTGCATGTTTTCATCAA+TGG - chr5.4:12972521-12972540 MS.gene59424:CDS 40.0%
! GGCCAATTATTGTTTCTTCC+AGG + chr5.4:12969990-12970009 None:intergenic 40.0%
! GTTTTGCAGAAAGCAATGCA+AGG - chr5.4:12970173-12970192 MS.gene59424:CDS 40.0%
! TAATGACCCTTTTGCAGATG+TGG - chr5.4:12969332-12969351 MS.gene59424:intron 40.0%
! TCGTAATCTGAAATCTGGTC+GGG + chr5.4:12970028-12970047 None:intergenic 40.0%
! TCTTGTCTAAAGCTTATGCC+AGG + chr5.4:12969798-12969817 None:intergenic 40.0%
! TGAAGGTTTTCAGAATTCGG+AGG - chr5.4:12970863-12970882 MS.gene59424:intron 40.0%
! TTCATCAATGGTCGACTTTC+CGG - chr5.4:12972533-12972552 MS.gene59424:CDS 40.0%
! TTTTGCTTCAACCAAGATCG+CGG + chr5.4:12973528-12973547 None:intergenic 40.0%
!! GGATAAGTATCGGAAGATAC+TGG - chr5.4:12973308-12973327 MS.gene59424:intron 40.0%
!! GGTGCTTCTAGGATAATGTA+TGG + chr5.4:12969218-12969237 None:intergenic 40.0%
!! TGTGTCGATAGTGTTGATGT+AGG - chr5.4:12972434-12972453 MS.gene59424:intron 40.0%
!!! ACTTTTTTCGATGCTCCTGA+AGG - chr5.4:12973226-12973245 MS.gene59424:intron 40.0%
!!! GTTGTTTTTGAGGAACTTGG+GGG - chr5.4:12973561-12973580 MS.gene59424:intron 40.0%
!!! TGCTGTTTTGGTCTTTTGAG+GGG - chr5.4:12969703-12969722 MS.gene59424:CDS 40.0%
!!! TGCTGTTTTTAACACGGCAA+AGG - chr5.4:12971699-12971718 MS.gene59424:intron 40.0%
!!! TTGTTTTTGAGGAACTTGGG+GGG - chr5.4:12973562-12973581 MS.gene59424:intron 40.0%
AACCCTACAAGCCTACAATG+TGG - chr5.4:12970739-12970758 MS.gene59424:CDS 45.0%
AATCACTGCTTCTGGTCTCT+TGG - chr5.4:12971989-12972008 MS.gene59424:intron 45.0%
ACGACTTGAGCTCAACCATT+TGG + chr5.4:12969916-12969935 None:intergenic 45.0%
ACTTGGAACACAGGAATCCT+AGG - chr5.4:12972860-12972879 MS.gene59424:intron 45.0%
AGAATGCTTACCACTGGATC+TGG + chr5.4:12970572-12970591 None:intergenic 45.0%
AGGGAAAGTTGGACTTGTCT+TGG - chr5.4:12972909-12972928 MS.gene59424:intron 45.0%
AGGGAAGAAATGACCTTGTG+AGG - chr5.4:12969570-12969589 MS.gene59424:CDS 45.0%
ATGGCTGTTGAAATGGGAAC+TGG - chr5.4:12970512-12970531 MS.gene59424:CDS 45.0%
ATGGTTGAGTTACCTGCTCT+AGG + chr5.4:12973845-12973864 None:intergenic 45.0%
CACACCTGAGAGAGGATTAT+AGG + chr5.4:12970260-12970279 None:intergenic 45.0%
CACAGAGTCTGGAGATTGTT+CGG - chr5.4:12971570-12971589 MS.gene59424:CDS 45.0%
CATCACTCTGGCAGATGATT+TGG + chr5.4:12971617-12971636 None:intergenic 45.0%
CATGGATAACAACTGGACCT+AGG + chr5.4:12972880-12972899 None:intergenic 45.0%
CATTTCGAGACTTGGAACAC+AGG - chr5.4:12972851-12972870 MS.gene59424:intron 45.0%
CTAGCAAGTTGCATCAACCA+TGG - chr5.4:12972270-12972289 MS.gene59424:intron 45.0%
CTAGGTCCAGTTGTTATCCA+TGG - chr5.4:12972878-12972897 MS.gene59424:intron 45.0%
GAACGTCTCTATGAGTCACA+GGG - chr5.4:12970230-12970249 MS.gene59424:intron 45.0%
GACCCAGTTGTTACCTCATT+AGG - chr5.4:12971436-12971455 MS.gene59424:intron 45.0%
GATATGGACGGTATGGGTAA+AGG - chr5.4:12973268-12973287 MS.gene59424:intron 45.0%
GATCTTCCCACATCTGCAAA+AGG + chr5.4:12969342-12969361 None:intergenic 45.0%
GCAAATGCCAAATCCTGAAC+AGG + chr5.4:12970905-12970924 None:intergenic 45.0%
GCAACTACAATCACTGCTTC+TGG - chr5.4:12971981-12972000 MS.gene59424:intron 45.0%
GCATCAACCATGGAATCAAG+TGG - chr5.4:12972280-12972299 MS.gene59424:intron 45.0%
GCATTGGATATGGACGGTAT+GGG - chr5.4:12973262-12973281 MS.gene59424:intron 45.0%
GGAACATACTTGAGCCAAAC+AGG + chr5.4:12969777-12969796 None:intergenic 45.0%
GGGGTTCAGAGTAAAATGCT+TGG - chr5.4:12970452-12970471 MS.gene59424:intron 45.0%
GGTTGACTGAACAATGAGAC+TGG + chr5.4:12972495-12972514 None:intergenic 45.0%
GTCCACATTGTAGGCTTGTA+GGG + chr5.4:12970744-12970763 None:intergenic 45.0%
GTCTCATTGTTCAGTCAACC+GGG - chr5.4:12972495-12972514 MS.gene59424:CDS 45.0%
GTCTGGAGATGCAAGATTCA+TGG + chr5.4:12973051-12973070 None:intergenic 45.0%
TACTGGACTGCTATAGCTAC+TGG - chr5.4:12973325-12973344 MS.gene59424:intron 45.0%
TAGGTGGACATTTCGAGACT+TGG - chr5.4:12972843-12972862 MS.gene59424:intron 45.0%
TATGAGCTGGGCTGCAAAAA+TGG - chr5.4:12970493-12970512 MS.gene59424:intron 45.0%
TCTGAATCCTTTCTCCATGG+AGG - chr5.4:12972461-12972480 MS.gene59424:intron 45.0%
TGAACGTCTCTATGAGTCAC+AGG - chr5.4:12970229-12970248 MS.gene59424:intron 45.0%
TGCAATGACTGCAACTATGC+CGG - chr5.4:12973352-12973371 MS.gene59424:intron 45.0%
TGCACTATAACTTACCTCCG+TGG - chr5.4:12971647-12971666 MS.gene59424:CDS 45.0%
TGGACTTGTCTTGGCAGAAA+TGG - chr5.4:12972918-12972937 MS.gene59424:intron 45.0%
TGGCTGTTGAAATGGGAACT+GGG - chr5.4:12970513-12970532 MS.gene59424:CDS 45.0%
TGTCCACATTGTAGGCTTGT+AGG + chr5.4:12970745-12970764 None:intergenic 45.0%
TTCTGTAGAGTGGATGCAGT+CGG - chr5.4:12973079-12973098 MS.gene59424:intron 45.0%
! ATTACGAGAGCCCTTTTCCT+TGG - chr5.4:12970041-12970060 MS.gene59424:intron 45.0%
! CATTATGCACCGGTAACATG+TGG - chr5.4:12970617-12970636 MS.gene59424:intron 45.0%
! CTTTGGAGGTCTAAATGACC+CGG + chr5.4:12973374-12973393 None:intergenic 45.0%
! GGCTCTCGTAATCTGAAATC+TGG + chr5.4:12970033-12970052 None:intergenic 45.0%
! GGTTCCATGGATTATGTGCA+AGG - chr5.4:12970535-12970554 MS.gene59424:CDS 45.0%
! GTTCTCATGGGAGAGTTTTG+AGG - chr5.4:12971938-12971957 MS.gene59424:intron 45.0%
! GTTTGGCTCAAGTATGTTCC+TGG - chr5.4:12969777-12969796 MS.gene59424:intron 45.0%
! TAATCTGAAATCTGGTCGGG+AGG + chr5.4:12970025-12970044 None:intergenic 45.0%
! TGGAGCATCATAGTCATAGC+TGG + chr5.4:12971115-12971134 None:intergenic 45.0%
! TGTGCAGAGGTTTTCCTGTT+TGG - chr5.4:12969760-12969779 MS.gene59424:intron 45.0%
! TTGGCAGAAATGGACTTACC+AGG - chr5.4:12972928-12972947 MS.gene59424:intron 45.0%
!! GCAAGTGAACTTTTGGAGGA+TGG + chr5.4:12973707-12973726 None:intergenic 45.0%
!! TGTTTTTGAGGAACTTGGGG+GGG - chr5.4:12973563-12973582 MS.gene59424:intron 45.0%
AAATGGGAACTGGGGTTCCA+TGG - chr5.4:12970522-12970541 MS.gene59424:CDS 50.0%
ACCCTCCAGTTCCAAGGAAA+AGG + chr5.4:12970055-12970074 None:intergenic 50.0%
AGATGATGCTCCAGATCCAG+TGG - chr5.4:12970559-12970578 MS.gene59424:CDS 50.0%
AGGTTCTGCCTATGGAACGA+GGG - chr5.4:12972635-12972654 MS.gene59424:intron 50.0%
AGTACCTTGTGCCATGTCAG+TGG + chr5.4:12973128-12973147 None:intergenic 50.0%
CAAGCCTACAATGTGGACAG+AGG - chr5.4:12970746-12970765 MS.gene59424:CDS 50.0%
CAAGCCTCTGTCCACATTGT+AGG + chr5.4:12970753-12970772 None:intergenic 50.0%
CAGCATTTCTACAATCCGGG+AGG + chr5.4:12971684-12971703 None:intergenic 50.0%
CAGCTCACAACAGTATCCAC+AGG - chr5.4:12971276-12971295 MS.gene59424:CDS 50.0%
CCCTCCAGTTCCAAGGAAAA+GGG + chr5.4:12970054-12970073 None:intergenic 50.0%
CCGTCCATATCCAATGCCAA+CGG + chr5.4:12973259-12973278 None:intergenic 50.0%
CGAACAATCTCCAGACTCTG+TGG + chr5.4:12971572-12971591 None:intergenic 50.0%
CTACAATGTGGACAGAGGCT+TGG - chr5.4:12970751-12970770 MS.gene59424:CDS 50.0%
GAAAACATGCACAGCATGCC+CGG + chr5.4:12972516-12972535 None:intergenic 50.0%
GCAATGACTGCAACTATGCC+GGG - chr5.4:12973353-12973372 MS.gene59424:intron 50.0%
GGCGATGTAAATCTTCGTGC+TGG - chr5.4:12972681-12972700 MS.gene59424:CDS 50.0%
GGCTGTTGAAATGGGAACTG+GGG - chr5.4:12970514-12970533 MS.gene59424:CDS 50.0%
GTATCCACAGGCTACATTGC+CGG - chr5.4:12971288-12971307 MS.gene59424:CDS 50.0%
GTCTTAACCCTCCAGTTCCA+AGG + chr5.4:12970061-12970080 None:intergenic 50.0%
GTGCTGTCAAAGAACGTAGG+TGG - chr5.4:12972827-12972846 MS.gene59424:intron 50.0%
TAAAAGGACCTCCAGCTGTG+CGG + chr5.4:12971086-12971105 None:intergenic 50.0%
TAACTCCCACAGGTTCCCAA+CGG + chr5.4:12973783-12973802 None:intergenic 50.0%
TCAACCAAGATCGCGGTACA+TGG + chr5.4:12973521-12973540 None:intergenic 50.0%
TGGCCCTATAATCCTCTCTC+AGG - chr5.4:12970253-12970272 MS.gene59424:intron 50.0%
! AGAGCCCTTTTCCTTGGAAC+TGG - chr5.4:12970047-12970066 MS.gene59424:intron 50.0%
! AGAGCCGTTGGCATTGGATA+TGG - chr5.4:12973252-12973271 MS.gene59424:intron 50.0%
! CATACATCTGGGGTGCTTCT+AGG + chr5.4:12969229-12969248 None:intergenic 50.0%
! CCCTTTTCCTTGGAACTGGA+GGG - chr5.4:12970051-12970070 MS.gene59424:intron 50.0%
! CCGTTGGCATTGGATATGGA+CGG - chr5.4:12973256-12973275 MS.gene59424:intron 50.0%
! CTCTAACAGGTTGGGCTGAA+AGG - chr5.4:12973020-12973039 MS.gene59424:CDS 50.0%
! GCTTTGCTCAGTGTTGCTGT+TGG - chr5.4:12972717-12972736 MS.gene59424:CDS 50.0%
! GGCATTGGATATGGACGGTA+TGG - chr5.4:12973261-12973280 MS.gene59424:intron 50.0%
!! ACAAATTTTGGCCGCACAGC+TGG - chr5.4:12971072-12971091 MS.gene59424:intron 50.0%
!! GCAAGCTTTGGAACTCCGTT+GGG - chr5.4:12973765-12973784 MS.gene59424:intron 50.0%
!! TGCAAGCTTTGGAACTCCGT+TGG - chr5.4:12973764-12973783 MS.gene59424:intron 50.0%
ACAATCCGGGAGGATGCTGA+CGG + chr5.4:12971674-12971693 None:intergenic 55.0%
ACCTGTGGGAGTTACGAGCA+AGG - chr5.4:12973789-12973808 MS.gene59424:intron 55.0%
AGGAGAAGAGCCGTTGGCAT+TGG - chr5.4:12973246-12973265 MS.gene59424:intron 55.0%
ATGTGGACAGAGGCTTGGAG+TGG - chr5.4:12970756-12970775 MS.gene59424:CDS 55.0%
CAACCAAGCTGGCACTTTGG+AGG + chr5.4:12973388-12973407 None:intergenic 55.0%
CAGGTTCTGCCTATGGAACG+AGG - chr5.4:12972634-12972653 MS.gene59424:intron 55.0%
CCTATCCTCCCTCGTTCCAT+AGG + chr5.4:12972646-12972665 None:intergenic 55.0%
CCTATGGAACGAGGGAGGAT+AGG - chr5.4:12972643-12972662 MS.gene59424:intron 55.0%
CGTCTCTATGAGTCACAGGG+TGG - chr5.4:12970233-12970252 MS.gene59424:intron 55.0%
GAACTCCGTTGGGAACCTGT+GGG - chr5.4:12973775-12973794 MS.gene59424:intron 55.0%
GGTACCATGTACCGCGATCT+TGG - chr5.4:12973514-12973533 MS.gene59424:intron 55.0%
TCAGCCACTGACATGGCACA+AGG - chr5.4:12973121-12973140 MS.gene59424:intron 55.0%
TCCTGAAGGAGAAGAGCCGT+TGG - chr5.4:12973240-12973259 MS.gene59424:intron 55.0%
TCCTTGCTCGTAACTCCCAC+AGG + chr5.4:12973793-12973812 None:intergenic 55.0%
TTCTGCCTATGGAACGAGGG+AGG - chr5.4:12972638-12972657 MS.gene59424:intron 55.0%
TTGGTTGACCGCAACCAAGC+TGG + chr5.4:12973399-12973418 None:intergenic 55.0%
! ACAGGTTGGGCTGAAAGGAG+AGG - chr5.4:12973025-12973044 MS.gene59424:CDS 55.0%
! AGACCTCCAAAGTGCCAGCT+TGG - chr5.4:12973382-12973401 MS.gene59424:intron 55.0%
! ATGGAAGAGATGGCTTGGCC+AGG + chr5.4:12973738-12973757 None:intergenic 55.0%
! CCAAAGTGCCAGCTTGGTTG+CGG - chr5.4:12973388-12973407 MS.gene59424:intron 55.0%
! GCCCTTTTCCTTGGAACTGG+AGG - chr5.4:12970050-12970069 MS.gene59424:intron 55.0%
!! AATTTTGGCCGCACAGCTGG+AGG - chr5.4:12971075-12971094 MS.gene59424:intron 55.0%
CCGCAACCAAGCTGGCACTT+TGG + chr5.4:12973391-12973410 None:intergenic 60.0%
GCCAACGGCTCTTCTCCTTC+AGG + chr5.4:12973244-12973263 None:intergenic 60.0%
GCGCTTGCCTCCATGGAGAA+AGG + chr5.4:12972471-12972490 None:intergenic 60.0%
GCGGTCAACCAACTCAGCGA+TGG - chr5.4:12973407-12973426 MS.gene59424:intron 60.0%
GGAACTCCGTTGGGAACCTG+TGG - chr5.4:12973774-12973793 MS.gene59424:intron 60.0%
GGGTACTCGAGTATGAGCCC+TGG - chr5.4:12969969-12969988 MS.gene59424:CDS 60.0%
TCCACAGGCTACATTGCCGG+AGG - chr5.4:12971291-12971310 MS.gene59424:CDS 60.0%
TCCTCCGGCAATGTAGCCTG+TGG + chr5.4:12971295-12971314 None:intergenic 60.0%
GGACAGAGGCTTGGAGTGGC+TGG - chr5.4:12970760-12970779 MS.gene59424:CDS 65.0%
GTGGTCCGTCAGCATCCTCC+CGG - chr5.4:12971666-12971685 MS.gene59424:CDS 65.0%
! AGGATGCTGACGGACCACGG+AGG + chr5.4:12971664-12971683 None:intergenic 65.0%
! GGGAGGATGCTGACGGACCA+CGG + chr5.4:12971667-12971686 None:intergenic 65.0%
! GACTGGGGCGCTTGCCTCCA+TGG + chr5.4:12972478-12972497 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr5.4 gene 12969079 12974179 12969079 ID=MS.gene59424
chr5.4 mRNA 12969079 12974179 12969079 ID=MS.gene59424.t1;Parent=MS.gene59424
chr5.4 exon 12974015 12974179 12974015 ID=MS.gene59424.t1.exon1;Parent=MS.gene59424.t1
chr5.4 CDS 12974015 12974179 12974015 ID=cds.MS.gene59424.t1;Parent=MS.gene59424.t1
chr5.4 exon 12973814 12973909 12973814 ID=MS.gene59424.t1.exon2;Parent=MS.gene59424.t1
chr5.4 CDS 12973814 12973909 12973814 ID=cds.MS.gene59424.t1;Parent=MS.gene59424.t1
chr5.4 exon 12973586 12973698 12973586 ID=MS.gene59424.t1.exon3;Parent=MS.gene59424.t1
chr5.4 CDS 12973586 12973698 12973586 ID=cds.MS.gene59424.t1;Parent=MS.gene59424.t1
chr5.4 exon 12973425 12973491 12973425 ID=MS.gene59424.t1.exon4;Parent=MS.gene59424.t1
chr5.4 CDS 12973425 12973491 12973425 ID=cds.MS.gene59424.t1;Parent=MS.gene59424.t1
chr5.4 exon 12972984 12973076 12972984 ID=MS.gene59424.t1.exon5;Parent=MS.gene59424.t1
chr5.4 CDS 12972984 12973076 12972984 ID=cds.MS.gene59424.t1;Parent=MS.gene59424.t1
chr5.4 exon 12972678 12972821 12972678 ID=MS.gene59424.t1.exon6;Parent=MS.gene59424.t1
chr5.4 CDS 12972678 12972821 12972678 ID=cds.MS.gene59424.t1;Parent=MS.gene59424.t1
chr5.4 exon 12972477 12972565 12972477 ID=MS.gene59424.t1.exon7;Parent=MS.gene59424.t1
chr5.4 CDS 12972477 12972565 12972477 ID=cds.MS.gene59424.t1;Parent=MS.gene59424.t1
chr5.4 exon 12972285 12972390 12972285 ID=MS.gene59424.t1.exon8;Parent=MS.gene59424.t1
chr5.4 CDS 12972285 12972390 12972285 ID=cds.MS.gene59424.t1;Parent=MS.gene59424.t1
chr5.4 exon 12972111 12972198 12972111 ID=MS.gene59424.t1.exon9;Parent=MS.gene59424.t1
chr5.4 CDS 12972111 12972198 12972111 ID=cds.MS.gene59424.t1;Parent=MS.gene59424.t1
chr5.4 exon 12971787 12971905 12971787 ID=MS.gene59424.t1.exon10;Parent=MS.gene59424.t1
chr5.4 CDS 12971787 12971905 12971787 ID=cds.MS.gene59424.t1;Parent=MS.gene59424.t1
chr5.4 exon 12971538 12971702 12971538 ID=MS.gene59424.t1.exon11;Parent=MS.gene59424.t1
chr5.4 CDS 12971538 12971702 12971538 ID=cds.MS.gene59424.t1;Parent=MS.gene59424.t1
chr5.4 exon 12971195 12971370 12971195 ID=MS.gene59424.t1.exon12;Parent=MS.gene59424.t1
chr5.4 CDS 12971195 12971370 12971195 ID=cds.MS.gene59424.t1;Parent=MS.gene59424.t1
chr5.4 exon 12970704 12970813 12970704 ID=MS.gene59424.t1.exon13;Parent=MS.gene59424.t1
chr5.4 CDS 12970704 12970813 12970704 ID=cds.MS.gene59424.t1;Parent=MS.gene59424.t1
chr5.4 exon 12970512 12970621 12970512 ID=MS.gene59424.t1.exon14;Parent=MS.gene59424.t1
chr5.4 CDS 12970512 12970621 12970512 ID=cds.MS.gene59424.t1;Parent=MS.gene59424.t1
chr5.4 exon 12970309 12970419 12970309 ID=MS.gene59424.t1.exon15;Parent=MS.gene59424.t1
chr5.4 CDS 12970309 12970419 12970309 ID=cds.MS.gene59424.t1;Parent=MS.gene59424.t1
chr5.4 exon 12970116 12970229 12970116 ID=MS.gene59424.t1.exon16;Parent=MS.gene59424.t1
chr5.4 CDS 12970116 12970229 12970116 ID=cds.MS.gene59424.t1;Parent=MS.gene59424.t1
chr5.4 exon 12969830 12970032 12969830 ID=MS.gene59424.t1.exon17;Parent=MS.gene59424.t1
chr5.4 CDS 12969830 12970032 12969830 ID=cds.MS.gene59424.t1;Parent=MS.gene59424.t1
chr5.4 exon 12969407 12969743 12969407 ID=MS.gene59424.t1.exon18;Parent=MS.gene59424.t1
chr5.4 CDS 12969407 12969743 12969407 ID=cds.MS.gene59424.t1;Parent=MS.gene59424.t1
chr5.4 exon 12969079 12969204 12969079 ID=MS.gene59424.t1.exon19;Parent=MS.gene59424.t1
chr5.4 CDS 12969079 12969204 12969079 ID=cds.MS.gene59424.t1;Parent=MS.gene59424.t1
Gene Sequence

>MS.gene59424

ATGGAAACTACCTCAGTTTCCAAATTTCTGTTTCTTTTTGTTTCCCTTACATTGTTCTCAGTTGTTTACTCTGATGTTACATATGACAGAAAAGCCATTATCATCAATGGCCAAAGAAGAATCCTTTTTTCTGGTTCCATACATTATCCTAGAAGCACCCCAGATGTATGTTCCTTCTAAATTAAGAAAATCAATATAAAAATCGAAACTTTACCTTTTTTTCAGTTTGTTTGTGAATTTTTTTTGACATATGTAATGACCCTTTTGCAGATGTGGGAAGATCTGATTTTCAAAGCTAAAGAAGGAGGTTTGGATGTAATTGAAACCTATGTGTTTTGGAATGTTCATGAACCTTCTCCTGGAAATGTACTTTACTTTCACACTCTCTTTCTCAAGTTTTTGTTTTTGTTTTGTTTTTCTTTGTTGAATTTGAGTTTTATTTTAATTTCTGTGTATACTGAATGGAATTTGTTCAATGCAGTACAATTTTGAGGGAAGAAATGACCTTGTGAGGTTTATTCAGACAGTACATAAAGCAGGACTATATGCTCATCTAAGAATTGGACCTTATGTTTGTGCTGAATGGAATTTTGGGTACTTTACTTATTATTATCTTGAAAAGTTTGCTGTTTTGGTCTTTTGAGGGGTAATTTTCCATTGTTTAATGATTTTATGTTGTCATGTGCAGAGGTTTTCCTGTTTGGCTCAAGTATGTTCCTGGCATAAGCTTTAGACAAGACAATGAACCTTTCAAGGTTTCTTTCATTTTTTAAGTACTTTCTTCAAAAACATTTTTTGTTAGAACATTGCTTTTTATATATATGACTAGTGAAACCAAATGGTTGAGCTCAAGTCGTTAATAAGCTTCACTGAAGGTCAAATTGATTGGGGGGTACTCGAGTATGAGCCCTGGAAGAAACAATAATTGGCCAAACTTTATTTACCTCCCGACCAGATTTCAGATTACGAGAGCCCTTTTCCTTGGAACTGGAGGGTTAAGACCAAATATAAATATGACTAGTGACAGATTAGAAGGGAATTTATGAAATTCCTTCATTTTTTCAATTGAAATAGTTTTTTTTTTTAAATGAATGGTTTTGCAGAAAGCAATGCAAGGGTTCACTGAGAAAATTGTGGGAATGATGAAGAGTGAACGTCTCTATGAGTCACAGGGTGGCCCTATAATCCTCTCTCAGGTGTGTAAACTTTATTGTTAATTTGCTTTTTGTGTAATTGTAAACTATCAAAGTCCCCTTTAATTGTTTTTAGAAAAGGTGCTAATTATGGTAGATTTTTCTTCTAGATCTAGCTTTGTAGCAACAATATAAATGATACATATACACTATATGTTGTTTCAGATTGAGAACGAGTATGGGGTTCAGAGTAAAATGCTTGGACCTGTTGGCTATAATTATATGAGCTGGGCTGCAAAAATGGCTGTTGAAATGGGAACTGGGGTTCCATGGATTATGTGCAAGGAAGATGATGCTCCAGATCCAGTGGTAAGCATTCTCATTCTCCCCCTCAAAAGTTATTAACATTATGCACCGGTAACATGTGGTTGCATATTCAGGAATTTGGTTGATAATTAATCTGTTCTCTGTTGTGTGACAGATAAACACTTGCAATGGTTTTTATTGTGATAAATTTACTCCCAATAAACCCTACAAGCCTACAATGTGGACAGAGGCTTGGAGTGGCTGGTAATCATTTTTTTAAATTACTTACTCCCATATTTTGGATTAGCGGAAATGAATTTGCTTAATTTTTTCTTTTGTCAAACATGAAGGTTTTCAGAATTCGGAGGTCCAATTCACAAAAGACCTGTTCAGGATTTGGCATTTGCAGTAGCCCGATTTATACAAAAAGGAGGATCCTTTGTAAACTACTACATGGTTGGTTTTCTCATACTGATTTAACAATCGACAATTTGGTGATGAATTGATGACAGCCACTTGAGTAACTTACTTTGTTCATGCAGTATCATGGAGGAACAAATTTTGGCCGCACAGCTGGAGGTCCTTTTATCACTACCAGCTATGACTATGATGCTCCACTAGATGAATATGGTGAGAGCTGATAGTTCGCAAACTCTTATGCATGAATTAGCAATTTTGAGTTCTAACACTTACCACACTTCACTAGAACGAAGTAACACACTATTATCCAATGCTTTCACTTCAAGATTTTGTTGTCACAGCTCACAACAGTATCCACAGGCTACATTGCCGGAGGACTAAACTGACTACTTTTTGTTACAATAAATATTGACAGGTTTAATTAGGCAACCAAAGTATGGTCATCTAAAGGAGCTTCATAAGGCTATTAAGATGTGTGAGAAAGCTTTAATTTCAACCGACCCAGTTGTTACCTCATTAGGAAACTTCCAACAGGTTAAACTCGCTTTCAAACGTTATTTCCTTTCACTGTTCCTTAAGTTCCTTTATTGACACAAGTGGATATTCATCCTTTCTCAGGCTTATGTATACACCACAGAGTCTGGAGATTGTTCGGCTTTTCTCTCAAATTATGACTCCAAATCATCTGCCAGAGTGATGTTCAACAATATGCACTATAACTTACCTCCGTGGTCCGTCAGCATCCTCCCGGATTGTAGAAATGCTGTTTTTAACACGGCAAAGGTATGTACCAGAAGTGTCAGACATGAAATCATCATACAACATTGATACTCAACGATCACAATTACGCTTCCTGTACTCAATTTATTCACCTTCAACATCTCCATTCAACGAGATTTAACAATTTAGCGTTTTGTTAAACCACTGAATTCATTTTCTCCCTATATTAGGTTGGAGTGCAAACATCTAAAATGCAAATGTTGCCTACAAATAGTGAGAGGTTCTCATGGGAGAGTTTTGAGGAAGATACTTCTTCTAGTTCTGCAACTACAATCACTGCTTCTGGTCTCTTGGAACAGATAAACGTAACAAGGGATACAAGTGATTATCTTTGGTATATAACTAGGTAAGATTCATTTTGTAAGTTGTTTACGCTTGCTCGTTAATTGATGTTGTCATCATCAATTGCCGGAAATTACTTACGCCTTTATATTCCCAAACTAGTTGAAAGTAGAGTCATTCTTTATTTTCATCCCACATACATCGACAATGACTGTATTGAGTCATAATGCTTAGCAATTCTCTTGCATTTTTCTAGCACACTCTAGATCACTAGCAAGTTGCATCAACCATGGAATCAAGTGGTTGATATTTCTATATGCTGTATTAAAATTGACATCTAAAATTGCACGACTTTGACATTTTGACTGAATTCCTAAGGTTCTTTAGCTTCTAAACAAAAACTACTTCTGCTGTACTAATTTATTTCATGTCAATGTGTCGATAGTGTTGATGTAGGTTCATCTGAATCCTTTCTCCATGGAGGCAAGCGCCCCAGTCTCATTGTTCAGTCAACCGGGCATGCTGTGCATGTTTTCATCAATGGTCGACTTTCCGGTATGTAGTTAGTCTGTTTCTTTAGTAGATCTCACTTCCATCAAAAAGTTAAAGGAAACATGATATATATGATTGAAAACAGGTTCTGCCTATGGAACGAGGGAGGATAGGAGATTCAGATACACTGGCGATGTAAATCTTCGTGCTGGAACAAACACTATAGCTTTGCTCAGTGTTGCTGTTGGACTTCCAGTAAGTTTTGTTTTCTACCTTTATTTTCTGAAATTCTACTGCAGTACTTAGTACTTACTAATATCATTCATCCGTGTTTTGTGCTGTCAAAGAACGTAGGTGGACATTTCGAGACTTGGAACACAGGAATCCTAGGTCCAGTTGTTATCCATGGACTTGATAAGGGAAAGTTGGACTTGTCTTGGCAGAAATGGACTTACCAGGTTGCTTAATCGTACTTTAGCAGCTTAAGTTGACATAGTTACAAGGAAATTTCAATTAAGATGATCTCTTCTCTAACAGGTTGGGCTGAAAGGAGAGGCCATGAATCTTGCATCTCCAGACGGTATCTCTTCTGTAGAGTGGATGCAGTCGGCGTTAGTTGTACAAAGAAATCAGCCACTGACATGGCACAAGGTACTAAAAAAGTGCTTAAGATCGACTTAAATAAAATATTTGACCCCAAAAATGATGAAATAACTGATCAGTAAACTTCGCAGACTTTTTTCGATGCTCCTGAAGGAGAAGAGCCGTTGGCATTGGATATGGACGGTATGGGTAAAGGTCAAATATGGATTAATGGGATAAGTATCGGAAGATACTGGACTGCTATAGCTACTGGTAGTTGCAATGACTGCAACTATGCCGGGTCATTTAGACCTCCAAAGTGCCAGCTTGGTTGCGGTCAACCAACTCAGCGATGGTAAGTTTATTTATTCGTTAATTAACATTTTAGGTGATGCATGACTTGGTTAAAAAATACCTAACATGGGTTACTTCATGTTTCAGGTACCATGTACCGCGATCTTGGTTGAAGCAAAATCATAATCTGTTAGTTGTTTTTGAGGAACTTGGGGGGGACCCTTCAAAAATTTCATTAGCAAAGAGATCAGTGAGCAGTGTGTGCGCTGATGTATCAGAGTATCATCCTAATCTTAAGAATTGGCACATTGATAGTTATGGAAAATCGGAAAATTTCCATCCTCCAAAAGTTCACTTGCATTGTAATCCTGGCCAAGCCATCTCTTCCATTAAATTTGCAAGCTTTGGAACTCCGTTGGGAACCTGTGGGAGTTACGAGCAAGGAGCTTGTCATTCTTCTGCATCTTATGACATCCTAGAGCAGGTAACTCAACCATTTTCTTCATTTAACAATCAAACATTGACTTTTAATATTATAAAAAGTTATATTGTCTCTAGTTCAGTTGCTCAGTGTTAATAGACACTAAATTTGAGACTAATTTTGTTTTTTCCGTCTCTAATTTCTGTCAACTTTATTTTTGGATGATAACATTGCTGATGCTATTTGTTTTTTCATTTTTACACAGAAATGTGTAGGAAAGCCAAGATGCATAGTAACTGTATCAAACAGTAATTTTGGGCGAGACCCGTGTCCAAATGTATTGAAGCGGTTATCAGTTGAAGCTGTTTGCGCTCCGACTATTACCAATTAA
Protein sequence

>MS.gene59424.t1

METTSVSKFLFLFVSLTLFSVVYSDVTYDRKAIIINGQRRILFSGSIHYPRSTPDMWEDLIFKAKEGGLDVIETYVFWNVHEPSPGNYNFEGRNDLVRFIQTVHKAGLYAHLRIGPYVCAEWNFGGFPVWLKYVPGISFRQDNEPFKKAMQGFTEKIVGMMKSERLYESQGGPIILSQIENEYGVQSKMLGPVGYNYMSWAAKMAVEMGTGVPWIMCKEDDAPDPVINTCNGFYCDKFTPNKPYKPTMWTEAWSGWFSEFGGPIHKRPVQDLAFAVARFIQKGGSFVNYYMYHGGTNFGRTAGGPFITTSYDYDAPLDEYGLIRQPKYGHLKELHKAIKMCEKALISTDPVVTSLGNFQQAYVYTTESGDCSAFLSNYDSKSSARVMFNNMHYNLPPWSVSILPDCRNAVFNTAKVGVQTSKMQMLPTNSERFSWESFEEDTSSSSATTITASGLLEQINVTRDTSDYLWYITSVDVGSSESFLHGGKRPSLIVQSTGHAVHVFINGRLSGSAYGTREDRRFRYTGDVNLRAGTNTIALLSVAVGLPNVGGHFETWNTGILGPVVIHGLDKGKLDLSWQKWTYQVGLKGEAMNLASPDGISSVEWMQSALVVQRNQPLTWHKTFFDAPEGEEPLALDMDGMGKGQIWINGISIGRYWTAIATGSCNDCNYAGSFRPPKCQLGCGQPTQRWYHVPRSWLKQNHNLLVVFEELGGDPSKISLAKRSVSSVCADVSEYHPNLKNWHIDSYGKSENFHPPKVHLHCNPGQAISSIKFASFGTPLGTCGSYEQGACHSSASYDILEQKCVGKPRCIVTVSNSNFGRDPCPNVLKRLSVEAVCAPTITN