Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78685.t1 | XP_024640378.1 | 99.3 | 281 | 2 | 0 | 1 | 281 | 1 | 281 | 3.90E-155 | 557.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78685.t1 | Q8GYR4 | 63.9 | 288 | 88 | 6 | 1 | 279 | 1 | 281 | 1.0e-92 | 341.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78685.t1 | G7K5T8 | 99.3 | 281 | 2 | 0 | 1 | 281 | 1 | 281 | 2.8e-155 | 557.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052500 | MS.gene78685 | 0.826941 | 2.06E-54 | -1.69E-46 |
| MS.gene052502 | MS.gene78685 | 0.821902 | 3.15E-53 | -1.69E-46 |
| MS.gene052824 | MS.gene78685 | 0.802099 | 6.59E-49 | -1.69E-46 |
| MS.gene052826 | MS.gene78685 | 0.823072 | 1.69E-53 | -1.69E-46 |
| MS.gene058635 | MS.gene78685 | 0.80611 | 9.64E-50 | -1.69E-46 |
| MS.gene060879 | MS.gene78685 | 0.829433 | 5.16E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78685.t1 | MTR_5g075710 | 99.288 | 281 | 2 | 0 | 1 | 281 | 1 | 281 | 0.0 | 577 |
| MS.gene78685.t1 | MTR_5g075710 | 99.200 | 250 | 2 | 0 | 32 | 281 | 17 | 266 | 0.0 | 513 |
| MS.gene78685.t1 | MTR_5g075710 | 97.951 | 244 | 5 | 0 | 38 | 281 | 1 | 244 | 1.60e-180 | 496 |
| MS.gene78685.t1 | MTR_7g074100 | 67.944 | 287 | 74 | 6 | 1 | 278 | 1 | 278 | 4.17e-128 | 365 |
| MS.gene78685.t1 | MTR_3g062640 | 75.966 | 233 | 47 | 3 | 7 | 232 | 3 | 233 | 2.99e-127 | 362 |
| MS.gene78685.t1 | MTR_8g005550 | 67.491 | 283 | 73 | 6 | 3 | 279 | 5 | 274 | 5.83e-125 | 357 |
| MS.gene78685.t1 | MTR_8g006580 | 67.491 | 283 | 73 | 6 | 3 | 279 | 5 | 274 | 5.83e-125 | 357 |
| MS.gene78685.t1 | MTR_8g006605 | 67.491 | 283 | 73 | 6 | 3 | 279 | 5 | 274 | 5.83e-125 | 357 |
| MS.gene78685.t1 | MTR_8g005430 | 66.784 | 283 | 74 | 7 | 3 | 279 | 5 | 273 | 2.57e-122 | 350 |
| MS.gene78685.t1 | MTR_3g010220 | 51.916 | 287 | 106 | 5 | 10 | 279 | 20 | 291 | 1.38e-89 | 268 |
| MS.gene78685.t1 | MTR_2g005590 | 50.562 | 267 | 113 | 5 | 28 | 279 | 47 | 309 | 4.23e-72 | 224 |
| MS.gene78685.t1 | MTR_2g005590 | 50.373 | 268 | 113 | 6 | 28 | 279 | 47 | 310 | 2.51e-70 | 219 |
| MS.gene78685.t1 | MTR_3g078050 | 66.116 | 121 | 28 | 3 | 58 | 172 | 118 | 231 | 6.76e-48 | 159 |
| MS.gene78685.t1 | MTR_4g088135 | 47.590 | 166 | 29 | 4 | 58 | 172 | 118 | 276 | 1.71e-38 | 136 |
| MS.gene78685.t1 | MTR_3g054280 | 47.590 | 166 | 29 | 4 | 58 | 172 | 118 | 276 | 1.71e-38 | 136 |
| MS.gene78685.t1 | MTR_4g036415 | 44.800 | 125 | 59 | 4 | 135 | 257 | 217 | 333 | 1.30e-24 | 103 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78685.t1 | AT3G08620 | 62.500 | 288 | 92 | 5 | 1 | 279 | 1 | 281 | 4.44e-119 | 343 |
| MS.gene78685.t1 | AT2G38610 | 64.846 | 293 | 80 | 10 | 1 | 279 | 1 | 284 | 7.79e-119 | 342 |
| MS.gene78685.t1 | AT2G38610 | 64.846 | 293 | 80 | 10 | 1 | 279 | 1 | 284 | 7.79e-119 | 342 |
| MS.gene78685.t1 | AT3G08620 | 62.917 | 240 | 76 | 3 | 49 | 279 | 1 | 236 | 1.09e-100 | 294 |
| MS.gene78685.t1 | AT5G56140 | 50.685 | 292 | 120 | 8 | 5 | 281 | 32 | 314 | 1.47e-86 | 261 |
| MS.gene78685.t1 | AT4G26480 | 50.347 | 288 | 121 | 9 | 5 | 279 | 28 | 306 | 2.13e-84 | 255 |
| MS.gene78685.t1 | AT4G26480 | 50.347 | 288 | 121 | 9 | 5 | 279 | 28 | 306 | 2.13e-84 | 255 |
| MS.gene78685.t1 | AT1G09660 | 52.239 | 268 | 94 | 5 | 33 | 280 | 44 | 297 | 2.26e-83 | 253 |
| MS.gene78685.t1 | AT1G09660 | 52.239 | 268 | 94 | 5 | 33 | 280 | 44 | 297 | 2.26e-83 | 253 |
| MS.gene78685.t1 | AT4G26480 | 64.417 | 163 | 57 | 1 | 117 | 279 | 60 | 221 | 1.82e-73 | 224 |
| MS.gene78685.t1 | AT1G09660 | 50.691 | 217 | 83 | 3 | 33 | 235 | 44 | 250 | 1.21e-64 | 203 |
| MS.gene78685.t1 | AT5G51300 | 44.800 | 125 | 59 | 3 | 135 | 257 | 244 | 360 | 4.68e-24 | 102 |
| MS.gene78685.t1 | AT5G51300 | 44.800 | 125 | 59 | 3 | 135 | 257 | 244 | 360 | 4.68e-24 | 102 |
| MS.gene78685.t1 | AT5G51300 | 44.800 | 125 | 59 | 3 | 135 | 257 | 244 | 360 | 4.68e-24 | 102 |
Find 58 sgRNAs with CRISPR-Local
Find 147 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGTCAATGTTGTTGATTTA+AGG | 0.084192 | 5.1:-58229401 | MS.gene78685:CDS |
| AACTTTGTTGGGAGGCTTCT+TGG | 0.164659 | 5.1:-58229829 | MS.gene78685:CDS |
| TTGCTTCTCATGTTTATATT+TGG | 0.166777 | 5.1:+58231370 | None:intergenic |
| GAAAGACTATTGGTCAGTTT+TGG | 0.283012 | 5.1:+58228660 | None:intergenic |
| GAATTAGCCCTTGCTGTTCC+TGG | 0.348426 | 5.1:+58231394 | None:intergenic |
| TTGGGAGGCTTCTTGGCCCA+AGG | 0.368655 | 5.1:-58229822 | MS.gene78685:CDS |
| ATTTAAGAGTCTAGTACATA+AGG | 0.382326 | 5.1:+58230982 | None:intergenic |
| CGCTTCAGCGAATTACCCCT+TGG | 0.397848 | 5.1:+58229805 | None:intergenic |
| CGCGTATTTATCAGAGGAAA+AGG | 0.402670 | 5.1:-58229760 | MS.gene78685:CDS |
| ATCATTTCATTAGAGGTGAA+TGG | 0.424912 | 5.1:+58228691 | None:intergenic |
| TGGGAGGCTTCTTGGCCCAA+GGG | 0.460083 | 5.1:-58229821 | MS.gene78685:CDS |
| TCATTCAAGTGCTCAAATCC+TGG | 0.465607 | 5.1:+58229456 | None:intergenic |
| GACTATGACAGAGTGCAGTT+TGG | 0.471960 | 5.1:-58230517 | MS.gene78685:CDS |
| TGTACTAGACTCTTAAATCA+AGG | 0.476327 | 5.1:-58230977 | MS.gene78685:intron |
| CTACCAACTCAGTTAAGTAT+TGG | 0.476363 | 5.1:+58231044 | None:intergenic |
| GACACTACATCAAGTTTCAC+CGG | 0.479847 | 5.1:-58230463 | MS.gene78685:CDS |
| TTTAAGAGTCTAGTACATAA+GGG | 0.481131 | 5.1:+58230983 | None:intergenic |
| TTCAATAAAAGACTTCGATA+AGG | 0.496581 | 5.1:-58229737 | MS.gene78685:intron |
| ACAAATATCTTACAGTTGGA+TGG | 0.499395 | 5.1:+58230058 | None:intergenic |
| TTCAGTTCAACTTTGTTGGG+AGG | 0.499629 | 5.1:-58229837 | MS.gene78685:intron |
| CTTAAATCAACAACATTGAC+AGG | 0.499752 | 5.1:+58229402 | None:intergenic |
| AAGCGAGTGGAGGCTACTAC+TGG | 0.504350 | 5.1:-58229787 | MS.gene78685:CDS |
| ATGCGACAAGCTGTTCCATC+CGG | 0.511978 | 5.1:+58230444 | None:intergenic |
| GAGTTGCTGAGGGGAAGGCC+AGG | 0.515410 | 5.1:-58229474 | MS.gene78685:CDS |
| CTTGATGTAGTGTCTAAAGA+AGG | 0.537119 | 5.1:+58230472 | None:intergenic |
| ATCAGGGGCTAAATGTGGAT+TGG | 0.537326 | 5.1:-58230152 | MS.gene78685:intron |
| AGGAAGAGTTGCTGAGGGGA+AGG | 0.539626 | 5.1:-58229479 | MS.gene78685:CDS |
| GTAGCAGAATATCAGAAGCT+TGG | 0.544343 | 5.1:-58231025 | MS.gene78685:CDS |
| AAGGGTAGGACTTGCATGAA+AGG | 0.548903 | 5.1:+58231001 | None:intergenic |
| TTAAGGGCTTCTGGAAAGAG+TGG | 0.550881 | 5.1:-58230565 | MS.gene78685:CDS |
| TGTGAAGAAGATGTTGCGCT+TGG | 0.554183 | 5.1:-58230097 | MS.gene78685:CDS |
| TGTCATAGTCACTAAACCCT+TGG | 0.557531 | 5.1:+58230530 | None:intergenic |
| TAGCCAATACTTAACTGAGT+TGG | 0.564535 | 5.1:-58231047 | MS.gene78685:CDS |
| GCTTCAGCGAATTACCCCTT+GGG | 0.565469 | 5.1:+58229806 | None:intergenic |
| ATCTAAAGGAAGAGTTGCTG+AGG | 0.572490 | 5.1:-58229485 | MS.gene78685:intron |
| AGCCCTTGCTGTTCCTGGTG+AGG | 0.578872 | 5.1:+58231399 | None:intergenic |
| GGGAGGCTTCTTGGCCCAAG+GGG | 0.580940 | 5.1:-58229820 | MS.gene78685:CDS |
| ATGTGAGAATTTGAGACTGC+TGG | 0.585989 | 5.1:+58230120 | None:intergenic |
| GTGGATTGATGCAGAACCAA+GGG | 0.591733 | 5.1:-58230546 | MS.gene78685:CDS |
| GGGTAATTCGCTGAAGCGAG+TGG | 0.598682 | 5.1:-58229800 | MS.gene78685:CDS |
| TCTAAAGAAGGCATAAGACT+AGG | 0.599631 | 5.1:+58230484 | None:intergenic |
| ATTACATCAGGGGCTAAATG+TGG | 0.599851 | 5.1:-58230157 | MS.gene78685:intron |
| CTACATCAAGTTTCACCGGA+TGG | 0.606030 | 5.1:-58230459 | MS.gene78685:CDS |
| TCTAAAGGAAGAGTTGCTGA+GGG | 0.609826 | 5.1:-58229484 | MS.gene78685:intron |
| GAGAGACTACCACTCAGTTG+AGG | 0.613051 | 5.1:+58228715 | None:intergenic |
| AGAGTCTAGTACATAAGGGT+AGG | 0.616507 | 5.1:+58230987 | None:intergenic |
| ACAGTTGGATGGTTATCATG+AGG | 0.620762 | 5.1:+58230069 | None:intergenic |
| TTTCCTCACCAGGAACAGCA+AGG | 0.622680 | 5.1:-58231402 | MS.gene78685:CDS |
| TTCCTCACCAGGAACAGCAA+GGG | 0.622720 | 5.1:-58231401 | MS.gene78685:CDS |
| AGTGGATTGATGCAGAACCA+AGG | 0.632569 | 5.1:-58230547 | MS.gene78685:CDS |
| GCCTCAATCAAAATGTGCAG+TGG | 0.633269 | 5.1:+58229432 | None:intergenic |
| AACAATCAGATTTCCTCACC+AGG | 0.634098 | 5.1:-58231412 | MS.gene78685:CDS |
| GGTTGCCGCGTATTTATCAG+AGG | 0.641272 | 5.1:-58229766 | MS.gene78685:CDS |
| AGTCACAAGACATTTACAAG+AGG | 0.649466 | 5.1:-58228789 | MS.gene78685:CDS |
| GAAGAGAGTCCTCAACTGAG+TGG | 0.680778 | 5.1:-58228724 | MS.gene78685:CDS |
| TAATTCGCTGAAGCGAGTGG+AGG | 0.685966 | 5.1:-58229797 | MS.gene78685:CDS |
| CGAAGAGCTACTCAAACCTG+TGG | 0.704906 | 5.1:-58229355 | MS.gene78685:intron |
| CTAAAGGAAGAGTTGCTGAG+GGG | 0.733546 | 5.1:-58229483 | MS.gene78685:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAAAAAACCTTTAATATA+TGG | + | chr5.1:58229157-58229176 | None:intergenic | 10.0% |
| !!! | ATATTAAAGGTTTTTTATTT+TGG | - | chr5.1:58229158-58229177 | MS.gene78685:intron | 10.0% |
| !!! | TATTTTACAATTTTTTACAA+TGG | + | chr5.1:58229786-58229805 | None:intergenic | 10.0% |
| !! | ATTCTAAATCCATATATTAA+AGG | - | chr5.1:58229145-58229164 | MS.gene78685:intron | 15.0% |
| !! | TAGCAAATTTAATGATTAAA+GGG | + | chr5.1:58229900-58229919 | None:intergenic | 15.0% |
| !! | TTAGCAAATTTAATGATTAA+AGG | + | chr5.1:58229901-58229920 | None:intergenic | 15.0% |
| !!! | CATATACATATAACTATTTT+TGG | + | chr5.1:58228974-58228993 | None:intergenic | 15.0% |
| !!! | TTTATTATCAGAGATTTTAA+GGG | - | chr5.1:58229512-58229531 | MS.gene78685:intron | 15.0% |
| !! | ATATAGTCAAGATATCAATA+CGG | - | chr5.1:58231185-58231204 | MS.gene78685:intron | 20.0% |
| !! | ATGAAAAATATAAATACCAC+AGG | + | chr5.1:58230757-58230776 | None:intergenic | 20.0% |
| !! | ATGAATGAAAAAGAAATGTA+AGG | + | chr5.1:58229856-58229875 | None:intergenic | 20.0% |
| !! | ATTAAGTTCAATATTACATC+AGG | - | chr5.1:58229924-58229943 | MS.gene78685:intron | 20.0% |
| !! | CCTTTAGATTATAACAAAAT+AGG | + | chr5.1:58230597-58230616 | None:intergenic | 20.0% |
| !! | CTTCTGTCAAATATATATAT+AGG | + | chr5.1:58229373-58229392 | None:intergenic | 20.0% |
| !! | TGAATGAAAAAGAAATGTAA+GGG | + | chr5.1:58229855-58229874 | None:intergenic | 20.0% |
| !! | TTAAGTTCAATATTACATCA+GGG | - | chr5.1:58229925-58229944 | MS.gene78685:intron | 20.0% |
| !!! | ATATTTTGATTTTACCAAAC+CGG | - | chr5.1:58230994-58231013 | MS.gene78685:CDS | 20.0% |
| !!! | CATATTTAACTACTTTTAGT+TGG | - | chr5.1:58229445-58229464 | MS.gene78685:CDS | 20.0% |
| !!! | CCTATTTTGTTATAATCTAA+AGG | - | chr5.1:58230594-58230613 | MS.gene78685:intron | 20.0% |
| !!! | CTTTATTATCAGAGATTTTA+AGG | - | chr5.1:58229511-58229530 | MS.gene78685:intron | 20.0% |
| !!! | TCTTTTTATCATTTCATTAG+AGG | + | chr5.1:58231412-58231431 | None:intergenic | 20.0% |
| !!! | TGATGAGTTTAATTAACTTT+TGG | - | chr5.1:58228997-58229016 | MS.gene78685:intron | 20.0% |
| ! | AACTAACACAAATCAAAAGA+AGG | + | chr5.1:58230529-58230548 | None:intergenic | 25.0% |
| ! | AATAGAAGAATACAGATCAA+TGG | + | chr5.1:58229818-58229837 | None:intergenic | 25.0% |
| ! | ATCATAAAACCAAATTCGTA+AGG | - | chr5.1:58230454-58230473 | MS.gene78685:CDS | 25.0% |
| ! | ATTTAAGAGTCTAGTACATA+AGG | + | chr5.1:58229114-58229133 | None:intergenic | 25.0% |
| ! | CATGAAAATGCAGATTATAA+TGG | + | chr5.1:58230846-58230865 | None:intergenic | 25.0% |
| ! | GAATGAAAAAGAAATGTAAG+GGG | + | chr5.1:58229854-58229873 | None:intergenic | 25.0% |
| ! | GATTACATTCAAACTATTAC+CGG | + | chr5.1:58229703-58229722 | None:intergenic | 25.0% |
| ! | TAAGTTCAATATTACATCAG+GGG | - | chr5.1:58229926-58229945 | MS.gene78685:intron | 25.0% |
| ! | TATAAGAACAGACATAAAGT+AGG | + | chr5.1:58229478-58229497 | None:intergenic | 25.0% |
| ! | TATCTCATATTTGTGTTATG+AGG | - | chr5.1:58229286-58229305 | MS.gene78685:intron | 25.0% |
| ! | TGTTACAAATATCTTACAGT+TGG | + | chr5.1:58230042-58230061 | None:intergenic | 25.0% |
| ! | TTCAATAAAAGACTTCGATA+AGG | - | chr5.1:58230356-58230375 | MS.gene78685:intron | 25.0% |
| ! | TTGCTTCTCATGTTTATATT+TGG | + | chr5.1:58228726-58228745 | None:intergenic | 25.0% |
| ! | TTTAAGAGTCTAGTACATAA+GGG | + | chr5.1:58229113-58229132 | None:intergenic | 25.0% |
| !! | AAGGAGAGTTAGAAATATTT+TGG | + | chr5.1:58231262-58231281 | None:intergenic | 25.0% |
| !! | ACTCAGTTTTCTTAATAACT+TGG | - | chr5.1:58229258-58229277 | MS.gene78685:intron | 25.0% |
| !! | ATTTTCAGTTCAACTTTGTT+GGG | - | chr5.1:58230253-58230272 | MS.gene78685:intron | 25.0% |
| !! | TATTTTCAGTTCAACTTTGT+TGG | - | chr5.1:58230252-58230271 | MS.gene78685:intron | 25.0% |
| !! | TTTTTCACGTAAAATTCTCT+CGG | - | chr5.1:58230186-58230205 | MS.gene78685:intron | 25.0% |
| !!! | CTTTTTATGTTACTTGAATC+AGG | - | chr5.1:58229224-58229243 | MS.gene78685:intron | 25.0% |
| !!! | TGATGTTATTTTTCTACTCT+CGG | + | chr5.1:58230151-58230170 | None:intergenic | 25.0% |
| !!! | TTCAAGTTACATTTTAAAGC+CGG | + | chr5.1:58231016-58231035 | None:intergenic | 25.0% |
| AATTTACCTTGATACATTGC+CGG | + | chr5.1:58231228-58231247 | None:intergenic | 30.0% | |
| ACAAATATCTTACAGTTGGA+TGG | + | chr5.1:58230038-58230057 | None:intergenic | 30.0% | |
| ACGAGATTAGATTTGAAAAC+AGG | + | chr5.1:58230501-58230520 | None:intergenic | 30.0% | |
| ATAAAACCAAATTCGTAAGG+TGG | - | chr5.1:58230457-58230476 | MS.gene78685:CDS | 30.0% | |
| ATAACATCAAGAACTGTACA+CGG | - | chr5.1:58230162-58230181 | MS.gene78685:intron | 30.0% | |
| ATCATTTCATTAGAGGTGAA+TGG | + | chr5.1:58231405-58231424 | None:intergenic | 30.0% | |
| CTTAAATCAACAACATTGAC+AGG | + | chr5.1:58230694-58230713 | None:intergenic | 30.0% | |
| GGTTAAGTCGAATTTATTGT+CGG | - | chr5.1:58228890-58228909 | MS.gene78685:intron | 30.0% | |
| TAATATTATCTACGCACCAA+GGG | + | chr5.1:58230392-58230411 | None:intergenic | 30.0% | |
| TGAAAACAGGTTATAAAGAG+TGG | + | chr5.1:58230488-58230507 | None:intergenic | 30.0% | |
| TGCGTAGATAATATTACGAA+TGG | - | chr5.1:58230396-58230415 | MS.gene78685:intron | 30.0% | |
| TGTACTAGACTCTTAAATCA+AGG | - | chr5.1:58229116-58229135 | MS.gene78685:intron | 30.0% | |
| TTACTTTCCGAAGTTAAAAG+AGG | - | chr5.1:58230890-58230909 | MS.gene78685:intron | 30.0% | |
| ! | ATAATCTGCATTTTCATGCA+AGG | - | chr5.1:58230848-58230867 | MS.gene78685:intron | 30.0% |
| ! | GTAGCACCTTTTATTCTAAA+AGG | + | chr5.1:58229748-58229767 | None:intergenic | 30.0% |
| !! | CTGTCAATGTTGTTGATTTA+AGG | - | chr5.1:58230692-58230711 | MS.gene78685:intron | 30.0% |
| !! | GAAGCAATTTTGATGTTGAT+AGG | - | chr5.1:58228739-58228758 | MS.gene78685:CDS | 30.0% |
| !!! | GAAATATTTTGGCACAAGAA+TGG | + | chr5.1:58231251-58231270 | None:intergenic | 30.0% |
| AGTCACAAGACATTTACAAG+AGG | - | chr5.1:58231304-58231323 | MS.gene78685:intron | 35.0% | |
| ATTCTTCTACTCTCACAGTT+AGG | - | chr5.1:58230213-58230232 | MS.gene78685:intron | 35.0% | |
| CAAGAAATATTGTTTGCGCA+AGG | + | chr5.1:58230558-58230577 | None:intergenic | 35.0% | |
| CCTGCACAAAAGAATAACAA+AGG | + | chr5.1:58231281-58231300 | None:intergenic | 35.0% | |
| CTACCAACTCAGTTAAGTAT+TGG | + | chr5.1:58229052-58229071 | None:intergenic | 35.0% | |
| CTAGACTCTTAAATCAAGGT+TGG | - | chr5.1:58229120-58229139 | MS.gene78685:intron | 35.0% | |
| CTTGATGTAGTGTCTAAAGA+AGG | + | chr5.1:58229624-58229643 | None:intergenic | 35.0% | |
| GGTTGTAAAATGCTTTACAC+CGG | - | chr5.1:58231206-58231225 | MS.gene78685:intron | 35.0% | |
| GTAATATTATCTACGCACCA+AGG | + | chr5.1:58230393-58230412 | None:intergenic | 35.0% | |
| TAGCCAATACTTAACTGAGT+TGG | - | chr5.1:58229046-58229065 | MS.gene78685:intron | 35.0% | |
| TGGTCTAAATTGATAGACTC+TGG | - | chr5.1:58230416-58230435 | MS.gene78685:intron | 35.0% | |
| TTCGGCTATTGAATGAAGAT+CGG | - | chr5.1:58230964-58230983 | MS.gene78685:intron | 35.0% | |
| ! | CTTTTCCTCTGATAAATACG+CGG | + | chr5.1:58230335-58230354 | None:intergenic | 35.0% |
| ! | TATGTTACTTGAATCAGGCT+TGG | - | chr5.1:58229229-58229248 | MS.gene78685:intron | 35.0% |
| ! | TCTAAAGAAGGCATAAGACT+AGG | + | chr5.1:58229612-58229631 | None:intergenic | 35.0% |
| ! | TTTTTCTACTCTCGGACATA+TGG | + | chr5.1:58230143-58230162 | None:intergenic | 35.0% |
| !! | ATAAGGTATTTTCTCTCCCT+TGG | - | chr5.1:58230373-58230392 | MS.gene78685:intron | 35.0% |
| !! | ATTGTTTCTGTTCTATGCAC+CGG | - | chr5.1:58229681-58229700 | MS.gene78685:intron | 35.0% |
| !! | TCTAAAACAACGAGTTTTCC+AGG | + | chr5.1:58231128-58231147 | None:intergenic | 35.0% |
| !!! | CCTTTGTTATTCTTTTGTGC+AGG | - | chr5.1:58231278-58231297 | MS.gene78685:intron | 35.0% |
| !!! | GACACGCCTTTTAGAATAAA+AGG | - | chr5.1:58229739-58229758 | MS.gene78685:CDS | 35.0% |
| !!! | GTTACATTTTAAAGCCGGTT+TGG | + | chr5.1:58231011-58231030 | None:intergenic | 35.0% |
| !!! | TCCAAGTCCTCTTTTAACTT+CGG | + | chr5.1:58230900-58230919 | None:intergenic | 35.0% |
| AACAATCAGATTTCCTCACC+AGG | - | chr5.1:58228681-58228700 | MS.gene78685:CDS | 40.0% | |
| ACAGTTGGATGGTTATCATG+AGG | + | chr5.1:58230027-58230046 | None:intergenic | 40.0% | |
| ACCAAGCGATTGAACTCAAA+TGG | - | chr5.1:58228869-58228888 | MS.gene78685:intron | 40.0% | |
| AGAGTCTAGTACATAAGGGT+AGG | + | chr5.1:58229109-58229128 | None:intergenic | 40.0% | |
| ATCACACAGTCAAGTGAGTT+CGG | - | chr5.1:58230946-58230965 | MS.gene78685:intron | 40.0% | |
| ATCTAAAGGAAGAGTTGCTG+AGG | - | chr5.1:58230608-58230627 | MS.gene78685:intron | 40.0% | |
| ATTACATCAGGGGCTAAATG+TGG | - | chr5.1:58229936-58229955 | MS.gene78685:intron | 40.0% | |
| CGCGTATTTATCAGAGGAAA+AGG | - | chr5.1:58230333-58230352 | MS.gene78685:intron | 40.0% | |
| GACACTACATCAAGTTTCAC+CGG | - | chr5.1:58229630-58229649 | MS.gene78685:intron | 40.0% | |
| GAGAATCCAATTCCTCTAAG+TGG | - | chr5.1:58231099-58231118 | MS.gene78685:intron | 40.0% | |
| GTAGCAGAATATCAGAAGCT+TGG | - | chr5.1:58229068-58229087 | MS.gene78685:intron | 40.0% | |
| GTATTCCGTAATTCGTCAGA+AGG | + | chr5.1:58228917-58228936 | None:intergenic | 40.0% | |
| TCATTCAAGTGCTCAAATCC+TGG | + | chr5.1:58230640-58230659 | None:intergenic | 40.0% | |
| TCCGAAGTTAAAAGAGGACT+TGG | - | chr5.1:58230896-58230915 | MS.gene78685:intron | 40.0% | |
| TCTAAAGGAAGAGTTGCTGA+GGG | - | chr5.1:58230609-58230628 | MS.gene78685:intron | 40.0% | |
| TGTCATAGTCACTAAACCCT+TGG | + | chr5.1:58229566-58229585 | None:intergenic | 40.0% | |
| TTCAGTTCAACTTTGTTGGG+AGG | - | chr5.1:58230256-58230275 | MS.gene78685:intron | 40.0% | |
| TTTACACCGGCAATGTATCA+AGG | - | chr5.1:58231219-58231238 | MS.gene78685:intron | 40.0% | |
| ! | ACCATTTGAGTTCAATCGCT+TGG | + | chr5.1:58228873-58228892 | None:intergenic | 40.0% |
| ! | AGAGTCATCTTCTAGAGAAC+TGG | - | chr5.1:58228938-58228957 | MS.gene78685:intron | 40.0% |
| ! | ATGTGAGAATTTGAGACTGC+TGG | + | chr5.1:58229976-58229995 | None:intergenic | 40.0% |
| !! | TCAGAGATTTTAAGGGCTTC+TGG | - | chr5.1:58229519-58229538 | MS.gene78685:intron | 40.0% |
| !!! | ACCACTGCACATTTTGATTG+AGG | - | chr5.1:58230660-58230679 | MS.gene78685:intron | 40.0% |
| AACTTTGTTGGGAGGCTTCT+TGG | - | chr5.1:58230264-58230283 | MS.gene78685:intron | 45.0% | |
| AAGAGGACTTGGATTTCCTG+CGG | - | chr5.1:58230907-58230926 | MS.gene78685:intron | 45.0% | |
| AAGGGTAGGACTTGCATGAA+AGG | + | chr5.1:58229095-58229114 | None:intergenic | 45.0% | |
| AATTCCTCTAAGTGGAAGCC+TGG | - | chr5.1:58231107-58231126 | MS.gene78685:intron | 45.0% | |
| ACTTGGATTTCCTGCGGTAA+GGG | - | chr5.1:58230913-58230932 | MS.gene78685:intron | 45.0% | |
| AGGCTTCCACTTAGAGGAAT+TGG | + | chr5.1:58231108-58231127 | None:intergenic | 45.0% | |
| ATCAGGGGCTAAATGTGGAT+TGG | - | chr5.1:58229941-58229960 | MS.gene78685:intron | 45.0% | |
| CTAAAGGAAGAGTTGCTGAG+GGG | - | chr5.1:58230610-58230629 | MS.gene78685:intron | 45.0% | |
| CTACATCAAGTTTCACCGGA+TGG | - | chr5.1:58229634-58229653 | MS.gene78685:intron | 45.0% | |
| GACTATGACAGAGTGCAGTT+TGG | - | chr5.1:58229576-58229595 | MS.gene78685:intron | 45.0% | |
| GCCTCAATCAAAATGTGCAG+TGG | + | chr5.1:58230664-58230683 | None:intergenic | 45.0% | |
| TCGGACCTTCTGACGAATTA+CGG | - | chr5.1:58228909-58228928 | MS.gene78685:intron | 45.0% | |
| TGTGAAGAAGATGTTGCGCT+TGG | - | chr5.1:58229996-58230015 | MS.gene78685:intron | 45.0% | |
| ! | GTGGATTGATGCAGAACCAA+GGG | - | chr5.1:58229547-58229566 | MS.gene78685:intron | 45.0% |
| ! | TTAAGGGCTTCTGGAAAGAG+TGG | - | chr5.1:58229528-58229547 | MS.gene78685:intron | 45.0% |
| ! | TTTTCCAGGCTTCCACTTAG+AGG | + | chr5.1:58231114-58231133 | None:intergenic | 45.0% |
| !! | AGTGGATTGATGCAGAACCA+AGG | - | chr5.1:58229546-58229565 | MS.gene78685:intron | 45.0% |
| ATGCGACAAGCTGTTCCATC+CGG | + | chr5.1:58229652-58229671 | None:intergenic | 50.0% | |
| CGAAGAGCTACTCAAACCTG+TGG | - | chr5.1:58230738-58230757 | MS.gene78685:intron | 50.0% | |
| GAAGAGAGTCCTCAACTGAG+TGG | - | chr5.1:58231369-58231388 | MS.gene78685:CDS | 50.0% | |
| GACTTGGATTTCCTGCGGTA+AGG | - | chr5.1:58230912-58230931 | MS.gene78685:intron | 50.0% | |
| GAGAGACTACCACTCAGTTG+AGG | + | chr5.1:58231381-58231400 | None:intergenic | 50.0% | |
| GCGCTTCCACCTTACGAATT+TGG | + | chr5.1:58230466-58230485 | None:intergenic | 50.0% | |
| GCTTCAGCGAATTACCCCTT+GGG | + | chr5.1:58230290-58230309 | None:intergenic | 50.0% | |
| GGTTGCCGCGTATTTATCAG+AGG | - | chr5.1:58230327-58230346 | MS.gene78685:intron | 50.0% | |
| TAATTCGCTGAAGCGAGTGG+AGG | - | chr5.1:58230296-58230315 | MS.gene78685:intron | 50.0% | |
| TTCCTCACCAGGAACAGCAA+GGG | - | chr5.1:58228692-58228711 | MS.gene78685:CDS | 50.0% | |
| TTTCCTCACCAGGAACAGCA+AGG | - | chr5.1:58228691-58228710 | MS.gene78685:CDS | 50.0% | |
| !! | GAATTAGCCCTTGCTGTTCC+TGG | + | chr5.1:58228702-58228721 | None:intergenic | 50.0% |
| AAGCGAGTGGAGGCTACTAC+TGG | - | chr5.1:58230306-58230325 | MS.gene78685:intron | 55.0% | |
| AGGAAGAGTTGCTGAGGGGA+AGG | - | chr5.1:58230614-58230633 | MS.gene78685:intron | 55.0% | |
| CGCTTCAGCGAATTACCCCT+TGG | + | chr5.1:58230291-58230310 | None:intergenic | 55.0% | |
| GGGTAATTCGCTGAAGCGAG+TGG | - | chr5.1:58230293-58230312 | MS.gene78685:intron | 55.0% | |
| TGCACACTTTCCCTTACCGC+AGG | + | chr5.1:58230926-58230945 | None:intergenic | 55.0% | |
| TGGGAGGCTTCTTGGCCCAA+GGG | - | chr5.1:58230272-58230291 | MS.gene78685:intron | 60.0% | |
| TTGGGAGGCTTCTTGGCCCA+AGG | - | chr5.1:58230271-58230290 | MS.gene78685:intron | 60.0% | |
| !! | AGCCCTTGCTGTTCCTGGTG+AGG | + | chr5.1:58228697-58228716 | None:intergenic | 60.0% |
| GAGTTGCTGAGGGGAAGGCC+AGG | - | chr5.1:58230619-58230638 | MS.gene78685:intron | 65.0% | |
| GGGAGGCTTCTTGGCCCAAG+GGG | - | chr5.1:58230273-58230292 | MS.gene78685:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 58228666 | 58231449 | 58228666 | ID=MS.gene78685 |
| chr5.1 | mRNA | 58228666 | 58231449 | 58228666 | ID=MS.gene78685.t1;Parent=MS.gene78685 |
| chr5.1 | exon | 58231355 | 58231449 | 58231355 | ID=MS.gene78685.t1.exon1;Parent=MS.gene78685.t1 |
| chr5.1 | CDS | 58231355 | 58231449 | 58231355 | ID=cds.MS.gene78685.t1;Parent=MS.gene78685.t1 |
| chr5.1 | exon | 58230978 | 58231066 | 58230978 | ID=MS.gene78685.t1.exon2;Parent=MS.gene78685.t1 |
| chr5.1 | CDS | 58230978 | 58231066 | 58230978 | ID=cds.MS.gene78685.t1;Parent=MS.gene78685.t1 |
| chr5.1 | exon | 58230441 | 58230592 | 58230441 | ID=MS.gene78685.t1.exon3;Parent=MS.gene78685.t1 |
| chr5.1 | CDS | 58230441 | 58230592 | 58230441 | ID=cds.MS.gene78685.t1;Parent=MS.gene78685.t1 |
| chr5.1 | exon | 58230071 | 58230169 | 58230071 | ID=MS.gene78685.t1.exon4;Parent=MS.gene78685.t1 |
| chr5.1 | CDS | 58230071 | 58230169 | 58230071 | ID=cds.MS.gene78685.t1;Parent=MS.gene78685.t1 |
| chr5.1 | exon | 58229738 | 58229854 | 58229738 | ID=MS.gene78685.t1.exon5;Parent=MS.gene78685.t1 |
| chr5.1 | CDS | 58229738 | 58229854 | 58229738 | ID=cds.MS.gene78685.t1;Parent=MS.gene78685.t1 |
| chr5.1 | exon | 58229356 | 58229499 | 58229356 | ID=MS.gene78685.t1.exon6;Parent=MS.gene78685.t1 |
| chr5.1 | CDS | 58229356 | 58229499 | 58229356 | ID=cds.MS.gene78685.t1;Parent=MS.gene78685.t1 |
| chr5.1 | exon | 58228666 | 58228815 | 58228666 | ID=MS.gene78685.t1.exon7;Parent=MS.gene78685.t1 |
| chr5.1 | CDS | 58228666 | 58228815 | 58228666 | ID=cds.MS.gene78685.t1;Parent=MS.gene78685.t1 |
| Gene Sequence |
| Protein sequence |
