Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052824.t1 | RHN62458.1 | 94.7 | 244 | 13 | 0 | 1 | 244 | 273 | 516 | 2.70E-128 | 468 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052824.t1 | Q42716 | 59.0 | 229 | 92 | 1 | 11 | 239 | 275 | 501 | 2.0e-76 | 287.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052824.t1 | A0A396ICD9 | 94.7 | 244 | 13 | 0 | 1 | 244 | 273 | 516 | 1.9e-128 | 468.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049424 | MS.gene052824 | 0.819087 | 1.40E-52 | -1.69E-46 |
| MS.gene050987 | MS.gene052824 | 0.803282 | 3.76E-49 | -1.69E-46 |
| MS.gene052500 | MS.gene052824 | 0.947565 | 5.26E-106 | -1.69E-46 |
| MS.gene052502 | MS.gene052824 | 0.949822 | 5.83E-108 | -1.69E-46 |
| MS.gene052824 | MS.gene052826 | 0.949466 | 1.20E-107 | -1.69E-46 |
| MS.gene052824 | MS.gene052954 | 0.841212 | 5.45E-58 | -1.69E-46 |
| MS.gene052824 | MS.gene053216 | 0.800855 | 1.18E-48 | -1.69E-46 |
| MS.gene052824 | MS.gene056506 | 0.808809 | 2.58E-50 | -1.69E-46 |
| MS.gene052824 | MS.gene057079 | 0.811754 | 5.98E-51 | -1.69E-46 |
| MS.gene052824 | MS.gene059710 | 0.817986 | 2.48E-52 | -1.69E-46 |
| MS.gene052824 | MS.gene062501 | 0.83672 | 7.93E-57 | -1.69E-46 |
| MS.gene052824 | MS.gene063288 | 0.814894 | 1.22E-51 | -1.69E-46 |
| MS.gene052824 | MS.gene06667 | 0.809446 | 1.88E-50 | -1.69E-46 |
| MS.gene052824 | MS.gene067635 | 0.8255 | 4.53E-54 | -1.69E-46 |
| MS.gene052824 | MS.gene06797 | 0.802149 | 6.43E-49 | -1.69E-46 |
| MS.gene052824 | MS.gene068250 | 0.826064 | 3.33E-54 | -1.69E-46 |
| MS.gene052824 | MS.gene06883 | 0.807516 | 4.87E-50 | -1.69E-46 |
| MS.gene052824 | MS.gene069899 | 0.80251 | 5.42E-49 | -1.69E-46 |
| MS.gene052824 | MS.gene073032 | 0.814589 | 1.43E-51 | -1.69E-46 |
| MS.gene052824 | MS.gene09952 | 0.803714 | 3.06E-49 | -1.69E-46 |
| MS.gene052824 | MS.gene20430 | 0.821931 | 3.11E-53 | -1.69E-46 |
| MS.gene052824 | MS.gene22557 | 0.800676 | 1.29E-48 | -1.69E-46 |
| MS.gene052824 | MS.gene24429 | 0.809895 | 1.51E-50 | -1.69E-46 |
| MS.gene052824 | MS.gene24924 | 0.81812 | 2.31E-52 | -1.69E-46 |
| MS.gene052824 | MS.gene25201 | 0.80251 | 5.42E-49 | -1.69E-46 |
| MS.gene052824 | MS.gene28131 | 0.800431 | 1.45E-48 | -1.69E-46 |
| MS.gene052824 | MS.gene39213 | 0.804602 | 2.00E-49 | -1.69E-46 |
| MS.gene052824 | MS.gene39430 | 0.846735 | 1.80E-59 | -1.69E-46 |
| MS.gene052824 | MS.gene40366 | 0.8077 | 4.45E-50 | -1.69E-46 |
| MS.gene052824 | MS.gene40946 | 0.804687 | 1.92E-49 | -1.69E-46 |
| MS.gene052824 | MS.gene48059 | 0.801329 | 9.48E-49 | -1.69E-46 |
| MS.gene052824 | MS.gene51650 | 0.810352 | 1.20E-50 | -1.69E-46 |
| MS.gene052824 | MS.gene56285 | 0.801251 | 9.83E-49 | -1.69E-46 |
| MS.gene052824 | MS.gene63539 | 0.805401 | 1.36E-49 | -1.69E-46 |
| MS.gene052824 | MS.gene65895 | 0.805736 | 1.16E-49 | -1.69E-46 |
| MS.gene052824 | MS.gene65896 | 0.853315 | 2.59E-61 | -1.69E-46 |
| MS.gene052824 | MS.gene67136 | 0.802601 | 5.19E-49 | -1.69E-46 |
| MS.gene052824 | MS.gene70335 | 0.816251 | 6.09E-52 | -1.69E-46 |
| MS.gene052824 | MS.gene73270 | 0.821572 | 3.76E-53 | -1.69E-46 |
| MS.gene052824 | MS.gene73596 | 0.825725 | 4.01E-54 | -1.69E-46 |
| MS.gene052824 | MS.gene75626 | 0.800439 | 1.44E-48 | -1.69E-46 |
| MS.gene052824 | MS.gene77579 | 0.828778 | 7.44E-55 | -1.69E-46 |
| MS.gene052824 | MS.gene78685 | 0.802099 | 6.59E-49 | -1.69E-46 |
| MS.gene052824 | MS.gene82881 | 0.819032 | 1.44E-52 | -1.69E-46 |
| MS.gene052824 | MS.gene85663 | 0.82111 | 4.81E-53 | -1.69E-46 |
| MS.gene052824 | MS.gene87121 | 0.81343 | 2.57E-51 | -1.69E-46 |
| MS.gene052824 | MS.gene88148 | 0.817857 | 2.65E-52 | -1.69E-46 |
| MS.gene052824 | MS.gene88351 | 0.806396 | 8.39E-50 | -1.69E-46 |
| MS.gene052824 | MS.gene89511 | 0.820601 | 6.29E-53 | -1.69E-46 |
| MS.gene052824 | MS.gene92849 | 0.80661 | 7.57E-50 | -1.69E-46 |
| MS.gene052824 | MS.gene93875 | 0.823194 | 1.58E-53 | -1.69E-46 |
| MS.gene052824 | MS.gene95886 | 0.801171 | 1.02E-48 | -1.69E-46 |
| MS.gene052824 | MS.gene97220 | 0.811406 | 7.11E-51 | -1.69E-46 |
| MS.gene052824 | MS.gene99465 | 0.80694 | 6.44E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 53 sgRNAs with CRISPR-Local
Find 123 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAACTATTCATAAACCTTTC+TGG | 0.148087 | 4.3:+23776935 | None:intergenic |
| AATTGATAGAACTGCAATTA+AGG | 0.209450 | 4.3:-23778084 | MS.gene052824:CDS |
| TGCAATTAAGGGTTTGTTAC+TGG | 0.249499 | 4.3:-23778072 | MS.gene052824:intron |
| CAGGCAATTTCCAATCAAAT+TGG | 0.279422 | 4.3:+23776795 | None:intergenic |
| GATTTCCGAGGGACTAATAA+TGG | 0.309806 | 4.3:+23777073 | None:intergenic |
| ATTGATAGAACTGCAATTAA+GGG | 0.334613 | 4.3:-23778083 | MS.gene052824:CDS |
| TCATGTAACTGAAGAAGATT+TGG | 0.351651 | 4.3:-23777155 | MS.gene052824:CDS |
| ACCTTGTTTACCAATTTGAT+TGG | 0.352370 | 4.3:-23776805 | MS.gene052824:CDS |
| GCAATTTATGCATCACAGTT+TGG | 0.363381 | 4.3:+23777212 | None:intergenic |
| TGGAATAGCAGGGAAAGATT+TGG | 0.410048 | 4.3:-23776771 | MS.gene052824:CDS |
| CGAGGGACTAATAATGGAAT+CGG | 0.414477 | 4.3:+23777079 | None:intergenic |
| TGCTATTGCTGTGAATGAAT+TGG | 0.426800 | 4.3:-23776837 | MS.gene052824:CDS |
| CACAGGTAATAATCAATGCT+TGG | 0.434796 | 4.3:-23777006 | MS.gene052824:CDS |
| TGCAAGAGATCCTTCATGTT+GGG | 0.438675 | 4.3:-23776978 | MS.gene052824:CDS |
| CTCTAGAGTTTAAACCAGAA+AGG | 0.453846 | 4.3:-23776949 | MS.gene052824:CDS |
| TCTTTCCCTGCTATTCCATC+AGG | 0.454081 | 4.3:+23776776 | None:intergenic |
| CCTCTCCTTCCTGCTCCAAA+TGG | 0.455402 | 4.3:+23776878 | None:intergenic |
| ATGGAAGATATCAAACTAAA+CGG | 0.459025 | 4.3:-23777049 | MS.gene052824:CDS |
| CTGCAGGACATGTTTGCTGC+AGG | 0.468755 | 4.3:-23777289 | MS.gene052824:intron |
| CTACCTACACAGTTCTAGAA+TGG | 0.481998 | 4.3:-23777258 | MS.gene052824:CDS |
| CGATTCCATTATTAGTCCCT+CGG | 0.487329 | 4.3:-23777078 | MS.gene052824:CDS |
| ACAGGTAATAATCAATGCTT+GGG | 0.490396 | 4.3:-23777005 | MS.gene052824:CDS |
| GCAGGAAGGAGAGGTTGTCC+TGG | 0.494521 | 4.3:-23776869 | MS.gene052824:CDS |
| AAATTGCCTGATGGAATAGC+AGG | 0.494543 | 4.3:-23776782 | MS.gene052824:CDS |
| GAACTTATTCCATTTGGAGC+AGG | 0.505797 | 4.3:-23776887 | MS.gene052824:CDS |
| TACCTACACAGTTCTAGAAT+GGG | 0.509605 | 4.3:-23777257 | MS.gene052824:CDS |
| AATAGTTCAATAGATTTCAA+AGG | 0.515652 | 4.3:-23776920 | MS.gene052824:CDS |
| TCCAATCAAATTGGTAAACA+AGG | 0.520541 | 4.3:+23776804 | None:intergenic |
| CAAAATGTCCACAAAATCAC+TGG | 0.523149 | 4.3:+23778142 | None:intergenic |
| ATTAGTCCCTCGGAAATCAA+TGG | 0.524618 | 4.3:-23777068 | MS.gene052824:CDS |
| AACGGCTATGACATTGAAGC+TGG | 0.527947 | 4.3:-23777031 | MS.gene052824:CDS |
| CTTTCTGGTTTAAACTCTAG+AGG | 0.530634 | 4.3:+23776950 | None:intergenic |
| ATCAGTGGTAGTAGATCTGA+TGG | 0.547787 | 4.3:-23778182 | None:intergenic |
| TTTGATTGGAAATTGCCTGA+TGG | 0.558885 | 4.3:-23776791 | MS.gene052824:CDS |
| GAGGGACTAATAATGGAATC+GGG | 0.563642 | 4.3:+23777080 | None:intergenic |
| TTGCAAGAGATCCTTCATGT+TGG | 0.572370 | 4.3:-23776979 | MS.gene052824:CDS |
| TGGTAGCTATTGCAATGAGA+GGG | 0.572985 | 4.3:+23776708 | None:intergenic |
| CCATTTGGAGCAGGAAGGAG+AGG | 0.573152 | 4.3:-23776878 | MS.gene052824:CDS |
| TTGGTAGCTATTGCAATGAG+AGG | 0.577308 | 4.3:+23776707 | None:intergenic |
| ATATCTTCCATTGATTTCCG+AGG | 0.578402 | 4.3:+23777061 | None:intergenic |
| AGAGGTTCTTCCCAACATGA+AGG | 0.584606 | 4.3:+23776968 | None:intergenic |
| TGACATTGAAGCTGGAACAC+AGG | 0.589604 | 4.3:-23777023 | MS.gene052824:CDS |
| TATCTTCCATTGATTTCCGA+GGG | 0.591643 | 4.3:+23777062 | None:intergenic |
| GCAATAGCAAACAACACTCC+AGG | 0.593216 | 4.3:+23776851 | None:intergenic |
| TTATTCCATTTGGAGCAGGA+AGG | 0.624618 | 4.3:-23776883 | MS.gene052824:CDS |
| AGTAGATCTGATGGACATGT+TGG | 0.635182 | 4.3:-23778173 | None:intergenic |
| ATCTGATGGACATGTTGGTG+AGG | 0.638109 | 4.3:-23778168 | MS.gene052824:CDS |
| TGCCCATTCTAGAACTGTGT+AGG | 0.653867 | 4.3:+23777255 | None:intergenic |
| TCTGATGGACATGTTGGTGA+GGG | 0.659786 | 4.3:-23778167 | MS.gene052824:CDS |
| AATTGCCTGATGGAATAGCA+GGG | 0.665553 | 4.3:-23776781 | MS.gene052824:CDS |
| GATGAGGTGAGAACTGTGGT+TGG | 0.681132 | 4.3:-23777187 | MS.gene052824:CDS |
| GATGCATAAATTGCAAGATG+AGG | 0.731506 | 4.3:-23777203 | MS.gene052824:CDS |
| GCAAGATGAGGTGAGAACTG+TGG | 0.770272 | 4.3:-23777191 | MS.gene052824:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATGTAAAATTATTTATGTA+TGG | + | chr4.3:23777014-23777033 | None:intergenic | 10.0% |
| !! | AATATATAACTAAAAGGAAA+GGG | + | chr4.3:23776829-23776848 | None:intergenic | 15.0% |
| !! | GTAAGTAATATATAACTAAA+AGG | + | chr4.3:23776835-23776854 | None:intergenic | 15.0% |
| !! | TAATATATAACTAAAAGGAA+AGG | + | chr4.3:23776830-23776849 | None:intergenic | 15.0% |
| !!! | GAATTCTTCAAATTTAATTT+AGG | - | chr4.3:23777320-23777339 | MS.gene052824:intron | 15.0% |
| !!! | TTATACATTTTTCTCATATT+TGG | + | chr4.3:23778171-23778190 | None:intergenic | 15.0% |
| !! | AATAGTTCAATAGATTTCAA+AGG | - | chr4.3:23777936-23777955 | MS.gene052824:intron | 20.0% |
| !! | TCAATTTGAATAGTTATGTT+TGG | + | chr4.3:23776960-23776979 | None:intergenic | 20.0% |
| !! | TTATTTGAATGAACTGATTA+TGG | + | chr4.3:23777056-23777075 | None:intergenic | 20.0% |
| ! | AATTGATAGAACTGCAATTA+AGG | - | chr4.3:23776772-23776791 | MS.gene052824:CDS | 25.0% |
| ! | ATGGAAGATATCAAACTAAA+CGG | - | chr4.3:23777807-23777826 | MS.gene052824:intron | 25.0% |
| ! | ATTGATAGAACTGCAATTAA+GGG | - | chr4.3:23776773-23776792 | MS.gene052824:CDS | 25.0% |
| ! | GAACTAAAAAATTGTATTGG+AGG | - | chr4.3:23777266-23777285 | MS.gene052824:CDS | 25.0% |
| ! | GAGGAACTAAAAAATTGTAT+TGG | - | chr4.3:23777263-23777282 | MS.gene052824:CDS | 25.0% |
| ! | TAAAAAATTGTATTGGAGGA+TGG | - | chr4.3:23777270-23777289 | MS.gene052824:CDS | 25.0% |
| !! | GATTTTGAACTTATTCCATT+TGG | - | chr4.3:23777963-23777982 | MS.gene052824:intron | 25.0% |
| !!! | AAGAGTAGTTTTTTAGAGAA+TGG | + | chr4.3:23777398-23777417 | None:intergenic | 25.0% |
| AAACCATACTAAATTCCCTA+TGG | + | chr4.3:23777512-23777531 | None:intergenic | 30.0% | |
| ACAGGTAATAATCAATGCTT+GGG | - | chr4.3:23777851-23777870 | MS.gene052824:intron | 30.0% | |
| ATAGGGAATTTAGTATGGTT+TGG | - | chr4.3:23777511-23777530 | MS.gene052824:intron | 30.0% | |
| ATTTATTATTCAGCTCACGT+AGG | - | chr4.3:23776981-23777000 | MS.gene052824:CDS | 30.0% | |
| GAACTATTCATAAACCTTTC+TGG | + | chr4.3:23777924-23777943 | None:intergenic | 30.0% | |
| TCATGTAACTGAAGAAGATT+TGG | - | chr4.3:23777701-23777720 | MS.gene052824:intron | 30.0% | |
| TCCAATCAAATTGGTAAACA+AGG | + | chr4.3:23778055-23778074 | None:intergenic | 30.0% | |
| TGGAAGAAATAGAGGAAAAT+GGG | - | chr4.3:23777184-23777203 | MS.gene052824:CDS | 30.0% | |
| ! | ACCTTGTTTACCAATTTGAT+TGG | - | chr4.3:23778051-23778070 | MS.gene052824:intron | 30.0% |
| !!! | TTTTTTAGTTCCTCCAAATG+AGG | + | chr4.3:23777257-23777276 | None:intergenic | 30.0% |
| AAGCCATAGGGAATTTAGTA+TGG | - | chr4.3:23777506-23777525 | MS.gene052824:intron | 35.0% | |
| CAAAATGTCCACAAAATCAC+TGG | + | chr4.3:23776717-23776736 | None:intergenic | 35.0% | |
| CACAGGTAATAATCAATGCT+TGG | - | chr4.3:23777850-23777869 | MS.gene052824:intron | 35.0% | |
| CAGGCAATTTCCAATCAAAT+TGG | + | chr4.3:23778064-23778083 | None:intergenic | 35.0% | |
| GATGCATAAATTGCAAGATG+AGG | - | chr4.3:23777653-23777672 | MS.gene052824:intron | 35.0% | |
| GCAAACAAAGCCTATATCTT+AGG | + | chr4.3:23777113-23777132 | None:intergenic | 35.0% | |
| GCAATTTATGCATCACAGTT+TGG | + | chr4.3:23777647-23777666 | None:intergenic | 35.0% | |
| GTGGAAGAAATAGAGGAAAA+TGG | - | chr4.3:23777183-23777202 | MS.gene052824:CDS | 35.0% | |
| TAAAACTGTACTTTCTCTGC+AGG | - | chr4.3:23777551-23777570 | MS.gene052824:intron | 35.0% | |
| TATACAAAACCCTCCTCATT+TGG | - | chr4.3:23777241-23777260 | MS.gene052824:CDS | 35.0% | |
| TGCTATTGCTGTGAATGAAT+TGG | - | chr4.3:23778019-23778038 | MS.gene052824:intron | 35.0% | |
| TTTGATTGGAAATTGCCTGA+TGG | - | chr4.3:23778065-23778084 | MS.gene052824:intron | 35.0% | |
| ! | ATTGTATTGGAGGATGGTTT+TGG | - | chr4.3:23777276-23777295 | MS.gene052824:CDS | 35.0% |
| ! | TTGTATTGGAGGATGGTTTT+GGG | - | chr4.3:23777277-23777296 | MS.gene052824:CDS | 35.0% |
| !! | AGTATGGTTTGGTAACTACA+TGG | - | chr4.3:23777522-23777541 | MS.gene052824:intron | 35.0% |
| !! | ATATCTTCCATTGATTTCCG+AGG | + | chr4.3:23777798-23777817 | None:intergenic | 35.0% |
| !! | CTCTAGAGTTTAAACCAGAA+AGG | - | chr4.3:23777907-23777926 | MS.gene052824:intron | 35.0% |
| !! | CTTTCTGGTTTAAACTCTAG+AGG | + | chr4.3:23777909-23777928 | None:intergenic | 35.0% |
| !! | TACCTACACAGTTCTAGAAT+GGG | - | chr4.3:23777599-23777618 | MS.gene052824:intron | 35.0% |
| !! | TATCTTCCATTGATTTCCGA+GGG | + | chr4.3:23777797-23777816 | None:intergenic | 35.0% |
| !! | TGCAATTAAGGGTTTGTTAC+TGG | - | chr4.3:23776784-23776803 | MS.gene052824:CDS | 35.0% |
| AAACTCGCAAACAAAGCCAT+AGG | - | chr4.3:23777493-23777512 | MS.gene052824:intron | 40.0% | |
| AAATTGCCTGATGGAATAGC+AGG | - | chr4.3:23778074-23778093 | MS.gene052824:CDS | 40.0% | |
| AACTCGCAAACAAAGCCATA+GGG | - | chr4.3:23777494-23777513 | MS.gene052824:intron | 40.0% | |
| AATTGCCTGATGGAATAGCA+GGG | - | chr4.3:23778075-23778094 | MS.gene052824:CDS | 40.0% | |
| AGCCTATATCTTAGGACACT+TGG | + | chr4.3:23777105-23777124 | None:intergenic | 40.0% | |
| ATTAGTCCCTCGGAAATCAA+TGG | - | chr4.3:23777788-23777807 | MS.gene052824:intron | 40.0% | |
| CACCAAGTGTCCTAAGATAT+AGG | - | chr4.3:23777100-23777119 | MS.gene052824:CDS | 40.0% | |
| CGATTCCATTATTAGTCCCT+CGG | - | chr4.3:23777778-23777797 | MS.gene052824:intron | 40.0% | |
| GAAATAGAGGAAAATGGGAG+AGG | - | chr4.3:23777189-23777208 | MS.gene052824:CDS | 40.0% | |
| GATTTCCGAGGGACTAATAA+TGG | + | chr4.3:23777786-23777805 | None:intergenic | 40.0% | |
| GGAAAAAAGGAATGAGCATG+TGG | - | chr4.3:23777164-23777183 | MS.gene052824:CDS | 40.0% | |
| TGAGCATGTGGAAGAAATAG+AGG | - | chr4.3:23777176-23777195 | MS.gene052824:CDS | 40.0% | |
| TGCAAGAGATCCTTCATGTT+GGG | - | chr4.3:23777878-23777897 | MS.gene052824:intron | 40.0% | |
| TGGAATAGCAGGGAAAGATT+TGG | - | chr4.3:23778085-23778104 | MS.gene052824:CDS | 40.0% | |
| TGGTAGCTATTGCAATGAGA+GGG | + | chr4.3:23778151-23778170 | None:intergenic | 40.0% | |
| TTAGTTCCTCCAAATGAGGA+GGG | + | chr4.3:23777253-23777272 | None:intergenic | 40.0% | |
| TTGCAAGAGATCCTTCATGT+TGG | - | chr4.3:23777877-23777896 | MS.gene052824:intron | 40.0% | |
| ! | AAGGAAAGGAAAGGCTTTGA+GGG | + | chr4.3:23777466-23777485 | None:intergenic | 40.0% |
| ! | CGAGGGACTAATAATGGAAT+CGG | + | chr4.3:23777780-23777799 | None:intergenic | 40.0% |
| ! | GAACTTATTCCATTTGGAGC+AGG | - | chr4.3:23777969-23777988 | MS.gene052824:intron | 40.0% |
| ! | GAGGGACTAATAATGGAATC+GGG | + | chr4.3:23777779-23777798 | None:intergenic | 40.0% |
| ! | TTATTCCATTTGGAGCAGGA+AGG | - | chr4.3:23777973-23777992 | MS.gene052824:intron | 40.0% |
| ! | TTGGTAGCTATTGCAATGAG+AGG | + | chr4.3:23778152-23778171 | None:intergenic | 40.0% |
| ! | TTTAGTTCCTCCAAATGAGG+AGG | + | chr4.3:23777254-23777273 | None:intergenic | 40.0% |
| !! | ATAGGCTTTGTTTGCGAGTT+TGG | - | chr4.3:23777118-23777137 | MS.gene052824:CDS | 40.0% |
| !! | CTACCTACACAGTTCTAGAA+TGG | - | chr4.3:23777598-23777617 | MS.gene052824:intron | 40.0% |
| !! | TATGGCTTTGTTTGCGAGTT+TGG | + | chr4.3:23777494-23777513 | None:intergenic | 40.0% |
| !! | TGTATTGGAGGATGGTTTTG+GGG | - | chr4.3:23777278-23777297 | MS.gene052824:CDS | 40.0% |
| AACGGCTATGACATTGAAGC+TGG | - | chr4.3:23777825-23777844 | MS.gene052824:intron | 45.0% | |
| ACAAAACCCTCCTCATTTGG+AGG | - | chr4.3:23777244-23777263 | MS.gene052824:CDS | 45.0% | |
| AGAGGTTCTTCCCAACATGA+AGG | + | chr4.3:23777891-23777910 | None:intergenic | 45.0% | |
| ATAGAGGAAAATGGGAGAGG+AGG | - | chr4.3:23777192-23777211 | MS.gene052824:CDS | 45.0% | |
| GAAGGAAAGGAAAGGCTTTG+AGG | + | chr4.3:23777467-23777486 | None:intergenic | 45.0% | |
| GCAATAGCAAACAACACTCC+AGG | + | chr4.3:23778008-23778027 | None:intergenic | 45.0% | |
| TAGAGGAAAATGGGAGAGGA+GGG | - | chr4.3:23777193-23777212 | MS.gene052824:CDS | 45.0% | |
| TCTTTCCCTGCTATTCCATC+AGG | + | chr4.3:23778083-23778102 | None:intergenic | 45.0% | |
| TGACATTGAAGCTGGAACAC+AGG | - | chr4.3:23777833-23777852 | MS.gene052824:intron | 45.0% | |
| ! | ATCTGATGGACATGTTGGTG+AGG | - | chr4.3:23776688-23776707 | MS.gene052824:CDS | 45.0% |
| ! | CTTTGTTTGCGAGTTTGGAG+GGG | - | chr4.3:23777123-23777142 | MS.gene052824:CDS | 45.0% |
| ! | CTTTGTTTGCGAGTTTGGAG+GGG | + | chr4.3:23777142-23777123 | None:intergenic | 45.0% |
| ! | TCTGATGGACATGTTGGTGA+GGG | - | chr4.3:23776689-23776708 | MS.gene052824:CDS | 45.0% |
| ! | TGAGGGAACCAGTGATTTTG+TGG | - | chr4.3:23776706-23776725 | MS.gene052824:CDS | 45.0% |
| !! | AGGAAAGGAAAGGCTTTGAG+GGG | + | chr4.3:23777465-23777484 | None:intergenic | 45.0% |
| !! | GCTTTGTTTGCGAGTTTGGA+GGG | - | chr4.3:23777122-23777141 | MS.gene052824:CDS | 45.0% |
| !! | GCTTTGTTTGCGAGTTTGGA+GGG | + | chr4.3:23777141-23777122 | None:intergenic | 45.0% |
| !! | TGCCCATTCTAGAACTGTGT+AGG | + | chr4.3:23777604-23777623 | None:intergenic | 45.0% |
| !!! | GTATTGGAGGATGGTTTTGG+GGG | - | chr4.3:23777279-23777298 | MS.gene052824:CDS | 45.0% |
| !!! | TATTGGAGGATGGTTTTGGG+GGG | - | chr4.3:23777280-23777299 | MS.gene052824:CDS | 45.0% |
| AAATGGGAGAGGAGGGCTTT+AGG | - | chr4.3:23777200-23777219 | MS.gene052824:CDS | 50.0% | |
| AATGGGAGAGGAGGGCTTTA+GGG | - | chr4.3:23777201-23777220 | MS.gene052824:CDS | 50.0% | |
| AGGGGAAGGCTTGGGAAAAA+AGG | - | chr4.3:23777151-23777170 | MS.gene052824:CDS | 50.0% | |
| GATGAGGTGAGAACTGTGGT+TGG | - | chr4.3:23777669-23777688 | MS.gene052824:intron | 50.0% | |
| GCAAGATGAGGTGAGAACTG+TGG | - | chr4.3:23777665-23777684 | MS.gene052824:intron | 50.0% | |
| TTGGAGGGGAAGGAAAGGAA+AGG | + | chr4.3:23777475-23777494 | None:intergenic | 50.0% | |
| TTTGCGAGTTTGGAGGGGAA+GGG | - | chr4.3:23777128-23777147 | MS.gene052824:CDS | 50.0% | |
| !! | GGCTTTGTTTGCGAGTTTGG+AGG | - | chr4.3:23777121-23777140 | MS.gene052824:CDS | 50.0% |
| !! | GGCTTTGTTTGCGAGTTTGG+AGG | + | chr4.3:23777140-23777121 | None:intergenic | 50.0% |
| !!! | AGGATGGTTTTGGGGGGTTT+TGG | - | chr4.3:23777286-23777305 | MS.gene052824:CDS | 50.0% |
| !!! | ATGGTTTTGGGGGGTTTTGG+AGG | - | chr4.3:23777289-23777308 | MS.gene052824:intron | 50.0% |
| !!! | TGGTTTTGGGGGGTTTTGGA+GGG | - | chr4.3:23777290-23777309 | MS.gene052824:intron | 50.0% |
| CCTCTCCTTCCTGCTCCAAA+TGG | + | chr4.3:23777981-23778000 | None:intergenic | 55.0% | |
| CGAGTTTGGAGGGGAAGGAA+AGG | + | chr4.3:23777480-23777499 | None:intergenic | 55.0% | |
| GTTTGCGAGTTTGGAGGGGA+AGG | - | chr4.3:23777127-23777146 | MS.gene052824:CDS | 55.0% | |
| GTTTGCGAGTTTGGAGGGGA+AGG | + | chr4.3:23777146-23777127 | None:intergenic | 55.0% | |
| ! | ATGGGAGAGGAGGGCTTTAG+GGG | - | chr4.3:23777202-23777221 | MS.gene052824:CDS | 55.0% |
| ! | CCATTTGGAGCAGGAAGGAG+AGG | - | chr4.3:23777978-23777997 | MS.gene052824:intron | 55.0% |
| ! | CTGCAGGACATGTTTGCTGC+AGG | - | chr4.3:23777567-23777586 | MS.gene052824:intron | 55.0% |
| CGAGTTTGGAGGGGAAGGGA+GGG | - | chr4.3:23777132-23777151 | MS.gene052824:CDS | 60.0% | |
| GAGTTTGGAGGGGAAGGGAG+GGG | - | chr4.3:23777133-23777152 | MS.gene052824:CDS | 60.0% | |
| GCAGGAAGGAGAGGTTGTCC+TGG | - | chr4.3:23777987-23778006 | MS.gene052824:intron | 60.0% | |
| !! | TGGGAGAGGAGGGCTTTAGG+GGG | - | chr4.3:23777203-23777222 | MS.gene052824:CDS | 60.0% |
| GCGAGTTTGGAGGGGAAGGG+AGG | - | chr4.3:23777131-23777150 | MS.gene052824:CDS | 65.0% | |
| GGGAAGGGAGGGGAAGGCTT+GGG | - | chr4.3:23777143-23777162 | MS.gene052824:CDS | 65.0% | |
| TTGGAGGGGAAGGGAGGGGA+AGG | - | chr4.3:23777137-23777156 | MS.gene052824:CDS | 65.0% | |
| GGGGAAGGGAGGGGAAGGCT+TGG | - | chr4.3:23777142-23777161 | MS.gene052824:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 23776688 | 23778190 | 23776688 | ID=MS.gene052824 |
| chr4.3 | mRNA | 23776688 | 23778190 | 23776688 | ID=MS.gene052824.t1;Parent=MS.gene052824 |
| chr4.3 | exon | 23778073 | 23778190 | 23778073 | ID=MS.gene052824.t1.exon1;Parent=MS.gene052824.t1 |
| chr4.3 | CDS | 23778073 | 23778190 | 23778073 | ID=cds.MS.gene052824.t1;Parent=MS.gene052824.t1 |
| chr4.3 | exon | 23776688 | 23777305 | 23776688 | ID=MS.gene052824.t1.exon2;Parent=MS.gene052824.t1 |
| chr4.3 | CDS | 23776688 | 23777305 | 23776688 | ID=cds.MS.gene052824.t1;Parent=MS.gene052824.t1 |
| Gene Sequence |
| Protein sequence |
