Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78696.t1 | XP_003602973.1 | 97.4 | 389 | 10 | 0 | 1 | 389 | 1 | 389 | 9.00E-211 | 742.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78696.t1 | Q9S7T8 | 56.9 | 390 | 165 | 3 | 1 | 387 | 1 | 390 | 3.4e-126 | 453.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78696.t1 | G7J5Q8 | 97.4 | 389 | 10 | 0 | 1 | 389 | 1 | 389 | 6.5e-211 | 742.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051564 | MS.gene78696 | -0.816333 | 5.84E-52 | -1.69E-46 |
| MS.gene051566 | MS.gene78696 | -0.809561 | 1.78E-50 | -1.69E-46 |
| MS.gene054601 | MS.gene78696 | 0.968103 | 3.33E-128 | -1.69E-46 |
| MS.gene060237 | MS.gene78696 | 0.819104 | 1.38E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene006610 | MS.gene78696 | PPI |
| MS.gene045585 | MS.gene78696 | PPI |
| MS.gene065945 | MS.gene78696 | PPI |
| MS.gene031697 | MS.gene78696 | PPI |
| MS.gene065944 | MS.gene78696 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78696.t1 | MTR_3g101010 | 97.429 | 389 | 10 | 0 | 1 | 389 | 1 | 389 | 0.0 | 771 |
| MS.gene78696.t1 | MTR_3g101030 | 73.116 | 398 | 87 | 4 | 10 | 389 | 34 | 429 | 0.0 | 579 |
| MS.gene78696.t1 | MTR_4g045707 | 74.160 | 387 | 96 | 2 | 4 | 389 | 5 | 388 | 0.0 | 574 |
| MS.gene78696.t1 | MTR_3g018740 | 72.165 | 388 | 105 | 2 | 1 | 387 | 1 | 386 | 0.0 | 557 |
| MS.gene78696.t1 | MTR_8g027395 | 70.026 | 387 | 112 | 1 | 3 | 389 | 15 | 397 | 0.0 | 548 |
| MS.gene78696.t1 | MTR_8g461160 | 70.543 | 387 | 110 | 2 | 5 | 387 | 6 | 392 | 0.0 | 540 |
| MS.gene78696.t1 | MTR_3g101050 | 73.368 | 383 | 79 | 6 | 9 | 387 | 33 | 396 | 0.0 | 525 |
| MS.gene78696.t1 | MTR_8g027420 | 67.442 | 387 | 111 | 2 | 3 | 389 | 4 | 375 | 0.0 | 523 |
| MS.gene78696.t1 | MTR_3g101180 | 66.917 | 399 | 121 | 4 | 1 | 388 | 1 | 399 | 0.0 | 521 |
| MS.gene78696.t1 | MTR_3g048000 | 67.708 | 384 | 103 | 3 | 6 | 388 | 28 | 391 | 0.0 | 520 |
| MS.gene78696.t1 | MTR_2g046030 | 66.752 | 391 | 121 | 3 | 1 | 387 | 1 | 386 | 0.0 | 512 |
| MS.gene78696.t1 | MTR_7g451890 | 65.296 | 389 | 131 | 2 | 5 | 389 | 14 | 402 | 0.0 | 509 |
| MS.gene78696.t1 | MTR_2g045980 | 66.496 | 391 | 122 | 3 | 1 | 387 | 1 | 386 | 0.0 | 508 |
| MS.gene78696.t1 | MTR_4g088525 | 68.767 | 365 | 110 | 1 | 24 | 388 | 8 | 368 | 3.99e-179 | 503 |
| MS.gene78696.t1 | MTR_7g047780 | 65.296 | 389 | 131 | 2 | 5 | 389 | 14 | 402 | 7.07e-178 | 501 |
| MS.gene78696.t1 | MTR_3g101130 | 64.267 | 389 | 132 | 3 | 4 | 389 | 5 | 389 | 9.79e-177 | 497 |
| MS.gene78696.t1 | MTR_7g050750 | 63.427 | 391 | 139 | 2 | 3 | 389 | 6 | 396 | 3.41e-176 | 496 |
| MS.gene78696.t1 | MTR_7g050810 | 63.359 | 393 | 132 | 3 | 5 | 389 | 16 | 404 | 7.17e-176 | 496 |
| MS.gene78696.t1 | MTR_4g088535 | 65.104 | 384 | 114 | 3 | 5 | 388 | 7 | 370 | 7.55e-171 | 482 |
| MS.gene78696.t1 | MTR_3g015620 | 62.532 | 387 | 117 | 4 | 5 | 387 | 16 | 378 | 1.82e-157 | 448 |
| MS.gene78696.t1 | MTR_3g102920 | 61.316 | 380 | 107 | 5 | 13 | 388 | 66 | 409 | 7.65e-152 | 435 |
| MS.gene78696.t1 | MTR_3g100995 | 78.988 | 257 | 51 | 2 | 133 | 389 | 11 | 264 | 4.61e-146 | 415 |
| MS.gene78696.t1 | MTR_3g101190 | 54.499 | 389 | 100 | 3 | 1 | 389 | 1 | 312 | 8.65e-139 | 398 |
| MS.gene78696.t1 | MTR_3g101200 | 55.155 | 388 | 147 | 4 | 3 | 388 | 29 | 391 | 1.86e-135 | 393 |
| MS.gene78696.t1 | MTR_3g100010 | 61.465 | 314 | 73 | 2 | 30 | 310 | 42 | 340 | 7.13e-125 | 364 |
| MS.gene78696.t1 | MTR_3g018747 | 70.000 | 260 | 62 | 3 | 129 | 387 | 9 | 253 | 7.81e-124 | 358 |
| MS.gene78696.t1 | MTR_7g050830 | 56.688 | 314 | 103 | 3 | 5 | 296 | 16 | 318 | 3.58e-118 | 346 |
| MS.gene78696.t1 | MTR_3g015760 | 62.362 | 271 | 98 | 2 | 118 | 387 | 12 | 279 | 3.02e-107 | 317 |
| MS.gene78696.t1 | MTR_3g111160 | 74.762 | 210 | 50 | 2 | 181 | 389 | 13 | 220 | 1.60e-100 | 297 |
| MS.gene78696.t1 | MTR_3g100520 | 65.315 | 222 | 62 | 3 | 170 | 389 | 1 | 209 | 8.00e-97 | 288 |
| MS.gene78696.t1 | MTR_3g099970 | 69.898 | 196 | 42 | 2 | 129 | 324 | 20 | 198 | 4.17e-90 | 270 |
| MS.gene78696.t1 | MTR_3g114310 | 42.105 | 399 | 208 | 12 | 6 | 389 | 20 | 410 | 1.22e-88 | 274 |
| MS.gene78696.t1 | MTR_3g101110 | 60.581 | 241 | 61 | 4 | 129 | 363 | 68 | 280 | 3.24e-88 | 268 |
| MS.gene78696.t1 | MTR_2g046410 | 66.019 | 206 | 64 | 2 | 186 | 387 | 144 | 347 | 4.63e-87 | 268 |
| MS.gene78696.t1 | MTR_3g101020 | 70.899 | 189 | 24 | 3 | 203 | 389 | 1 | 160 | 5.50e-83 | 250 |
| MS.gene78696.t1 | MTR_3g101150 | 68.354 | 158 | 46 | 2 | 235 | 388 | 1 | 158 | 1.80e-68 | 213 |
| MS.gene78696.t1 | MTR_3g111150 | 61.017 | 177 | 45 | 2 | 7 | 183 | 1 | 153 | 6.69e-67 | 209 |
| MS.gene78696.t1 | MTR_3g102870 | 63.291 | 158 | 58 | 0 | 194 | 351 | 3 | 160 | 1.49e-63 | 201 |
| MS.gene78696.t1 | MTR_3g100990 | 69.925 | 133 | 40 | 0 | 1 | 133 | 1 | 133 | 4.53e-56 | 192 |
| MS.gene78696.t1 | MTR_4g093550 | 68.605 | 86 | 27 | 0 | 3 | 88 | 4 | 89 | 4.53e-32 | 117 |
| MS.gene78696.t1 | MTR_6g046890 | 70.238 | 84 | 22 | 1 | 13 | 96 | 7 | 87 | 8.05e-29 | 109 |
| MS.gene78696.t1 | MTR_3g101140 | 63.768 | 69 | 24 | 1 | 322 | 389 | 48 | 116 | 1.22e-18 | 81.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78696.t1 | AT1G47710 | 56.923 | 390 | 165 | 3 | 1 | 387 | 1 | 390 | 2.32e-163 | 464 |
| MS.gene78696.t1 | AT1G47710 | 56.923 | 390 | 165 | 3 | 1 | 387 | 28 | 417 | 1.62e-162 | 462 |
| MS.gene78696.t1 | AT3G45220 | 48.232 | 396 | 189 | 6 | 1 | 386 | 1 | 390 | 9.87e-129 | 375 |
| MS.gene78696.t1 | AT2G26390 | 49.747 | 396 | 179 | 8 | 1 | 386 | 1 | 386 | 1.04e-125 | 368 |
| MS.gene78696.t1 | AT2G25240 | 48.214 | 392 | 187 | 8 | 1 | 386 | 1 | 382 | 2.64e-123 | 362 |
| MS.gene78696.t1 | AT2G14540 | 45.269 | 391 | 187 | 6 | 1 | 386 | 29 | 397 | 9.61e-106 | 317 |
| MS.gene78696.t1 | AT1G62170 | 42.893 | 394 | 193 | 6 | 1 | 386 | 62 | 431 | 3.34e-104 | 315 |
| MS.gene78696.t1 | AT1G64030 | 43.367 | 392 | 195 | 6 | 1 | 386 | 1 | 371 | 4.60e-103 | 310 |
| MS.gene78696.t1 | AT1G62170 | 39.578 | 427 | 193 | 7 | 1 | 386 | 62 | 464 | 4.80e-97 | 297 |
| MS.gene78696.t1 | AT2G35580 | 40.967 | 393 | 189 | 9 | 1 | 386 | 15 | 371 | 5.75e-95 | 289 |
| MS.gene78696.t1 | AT1G64010 | 48.624 | 218 | 88 | 4 | 170 | 386 | 1 | 195 | 5.28e-65 | 206 |
| MS.gene78696.t1 | AT1G64010 | 47.783 | 203 | 82 | 4 | 185 | 386 | 2 | 181 | 3.35e-57 | 185 |
| MS.gene78696.t1 | AT1G63280 | 60.000 | 115 | 42 | 2 | 129 | 241 | 8 | 120 | 9.64e-41 | 140 |
| MS.gene78696.t1 | AT1G62160 | 38.009 | 221 | 109 | 4 | 171 | 386 | 21 | 218 | 3.02e-35 | 129 |
| MS.gene78696.t1 | AT1G51330 | 54.054 | 111 | 48 | 2 | 128 | 235 | 30 | 140 | 5.17e-30 | 114 |
| MS.gene78696.t1 | AT1G64020 | 31.707 | 123 | 77 | 4 | 1 | 119 | 1 | 120 | 3.27e-12 | 63.5 |
Find 90 sgRNAs with CRISPR-Local
Find 132 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGGAAGAAGTTCTTTAATA+AGG | 0.229650 | 3.2:-84092607 | None:intergenic |
| TTATCTTCGCCTTGCTTATA+AGG | 0.250540 | 3.2:-84092833 | None:intergenic |
| GATGTTGTTGTCTGATTCTT+TGG | 0.267730 | 3.2:-84091318 | None:intergenic |
| GAAAGACTTGTGAAATATAT+TGG | 0.284781 | 3.2:-84093125 | None:intergenic |
| AAGTGGAAGTAGGTGACTTT+AGG | 0.307716 | 3.2:+84092969 | MS.gene78696:CDS |
| CCAAAGTTCAATATTTCATT+TGG | 0.319061 | 3.2:+84092995 | MS.gene78696:CDS |
| CATAGAAACATACCTTGTTC+TGG | 0.320072 | 3.2:-84091628 | None:intergenic |
| GTTGAGATGATCGGTGGATT+TGG | 0.324906 | 3.2:-84091435 | None:intergenic |
| GTGTTAAGCATAATCGCTTC+TGG | 0.336647 | 3.2:+84091368 | MS.gene78696:CDS |
| TTTCTTCCAAATGCAAAAGA+TGG | 0.368008 | 3.2:+84092878 | MS.gene78696:CDS |
| ACTGGAACAATCATCTTTGT+TGG | 0.369413 | 3.2:+84093286 | MS.gene78696:CDS |
| ATTAAAGAACTTCTTCCTCT+TGG | 0.374691 | 3.2:+84092611 | MS.gene78696:CDS |
| CAGGTGCTCAATCCTCTTGT+TGG | 0.380464 | 3.2:+84093310 | MS.gene78696:CDS |
| AGCCCATGAATTCACTTCAT+TGG | 0.383156 | 3.2:-84092567 | None:intergenic |
| TTAAAGAACTTCTTCCTCTT+GGG | 0.399952 | 3.2:+84092612 | MS.gene78696:CDS |
| TTCTGAGGGTCCCACGCAAC+AGG | 0.407965 | 3.2:+84091391 | MS.gene78696:CDS |
| CTGCTGCATCTATATTGTTA+AGG | 0.411072 | 3.2:+84093188 | MS.gene78696:CDS |
| GAAAGAGAGGAGAGGACCGC+CGG | 0.415990 | 3.2:-84091507 | None:intergenic |
| AGGTGCTCAATCCTCTTGTT+GGG | 0.421016 | 3.2:+84093311 | MS.gene78696:CDS |
| AATCAGTGGCGACGATTTGT+TGG | 0.421422 | 3.2:-84091577 | None:intergenic |
| CGATTATGCTTAACACAACT+TGG | 0.425025 | 3.2:-84091361 | None:intergenic |
| GGAAGGAAGGTTGAAGAGAA+AGG | 0.426729 | 3.2:-84091556 | None:intergenic |
| TGACCAATGAAGTGAATTCA+TGG | 0.438108 | 3.2:+84092564 | MS.gene78696:CDS |
| AACAATCATCTTTGTTGGAC+AGG | 0.442686 | 3.2:+84093291 | MS.gene78696:CDS |
| TCTCTAATCATAAACAAGAA+AGG | 0.443816 | 3.2:-84093256 | None:intergenic |
| CCAAATGAAATATTGAACTT+TGG | 0.444637 | 3.2:-84092995 | None:intergenic |
| GTCATGAAAGGAACCTTGAC+TGG | 0.444676 | 3.2:-84092755 | None:intergenic |
| CGCTGAGTGATACGTTGGTT+TGG | 0.454352 | 3.2:-84091277 | None:intergenic |
| TTCATTGAAGTGAATGAAGA+AGG | 0.456815 | 3.2:+84093145 | MS.gene78696:CDS |
| CTCTAATCATAAACAAGAAA+GGG | 0.468439 | 3.2:-84093255 | None:intergenic |
| TCTCTTTCGTCGACGGCGTG+TGG | 0.470722 | 3.2:+84091522 | MS.gene78696:CDS |
| GAAGGAAGGTTGAAGAGAAA+GGG | 0.477583 | 3.2:-84091555 | None:intergenic |
| ACCGCCGGCGGGAGCAGCGT+CGG | 0.480997 | 3.2:-84091492 | None:intergenic |
| ATGATTAGAGAAGATTTGAC+TGG | 0.486911 | 3.2:+84093268 | MS.gene78696:CDS |
| CTCTTTCGTCGACGGCGTGT+GGG | 0.489030 | 3.2:+84091523 | MS.gene78696:CDS |
| GTGAGACCTCCACCAGAGAA+AGG | 0.492502 | 3.2:-84093061 | None:intergenic |
| TTCTTCCAAATGCAAAAGAT+GGG | 0.493850 | 3.2:+84092879 | MS.gene78696:CDS |
| GATGATCGGTGGATTTGGAT+TGG | 0.502023 | 3.2:-84091430 | None:intergenic |
| GGCAGCATTGGTTGAAAAGG+TGG | 0.507398 | 3.2:+84092904 | MS.gene78696:CDS |
| GCGACGATTTGTTGGAAGGA+AGG | 0.507919 | 3.2:-84091569 | None:intergenic |
| CATAATCGCTTCTGGTTCTG+AGG | 0.508427 | 3.2:+84091376 | MS.gene78696:CDS |
| AAAAGATGGGTTGGCAGCAT+TGG | 0.509349 | 3.2:+84092892 | MS.gene78696:CDS |
| GTGCATTGGCAAAGATGAGC+CGG | 0.510572 | 3.2:-84092652 | None:intergenic |
| TGAAACTTCTGATATGCTAA+AGG | 0.511157 | 3.2:+84093021 | MS.gene78696:CDS |
| TCCTTTGAAGTATAGTGCAT+TGG | 0.511249 | 3.2:-84092666 | None:intergenic |
| TCCAAATGCAAAAGATGGGT+TGG | 0.513480 | 3.2:+84092883 | MS.gene78696:CDS |
| GATCGGTGGATTTGGATTGG+AGG | 0.520767 | 3.2:-84091427 | None:intergenic |
| GTTGGCAGCATTGGTTGAAA+AGG | 0.523393 | 3.2:+84092901 | MS.gene78696:CDS |
| CTTGGTCTTCCTTATAAGCA+AGG | 0.532609 | 3.2:+84092824 | MS.gene78696:CDS |
| GTTGAAAAGTTCCTGTTGCG+TGG | 0.533671 | 3.2:-84091402 | None:intergenic |
| TGACTGGGCTACCATTCAAA+AGG | 0.534936 | 3.2:-84092739 | None:intergenic |
| CTCTCCGACGCTGCTCCCGC+CGG | 0.545449 | 3.2:+84091488 | MS.gene78696:CDS |
| CCTCTCCTCTCTTTCGTCGA+CGG | 0.547618 | 3.2:+84091515 | MS.gene78696:CDS |
| AGAGAGGAGAGGACCGCCGG+CGG | 0.548453 | 3.2:-84091504 | None:intergenic |
| TCCGACGCTGCTCCCGCCGG+CGG | 0.548583 | 3.2:+84091491 | MS.gene78696:CDS |
| GAGAGGAGAGGACCGCCGGC+GGG | 0.549070 | 3.2:-84091503 | None:intergenic |
| GCCAATGCACTATACTTCAA+AGG | 0.552753 | 3.2:+84092665 | MS.gene78696:CDS |
| TGGGCTGACAAAGAGACAAA+TGG | 0.553610 | 3.2:+84092584 | MS.gene78696:CDS |
| TTCCGTTGATTTCCAGAACA+AGG | 0.553793 | 3.2:+84091616 | MS.gene78696:CDS |
| TCTGATATGCTAAAGGAGCT+AGG | 0.556026 | 3.2:+84093028 | MS.gene78696:CDS |
| AGTGGCGACGATTTGTTGGA+AGG | 0.557837 | 3.2:-84091573 | None:intergenic |
| TTGAAAAGTTCCTGTTGCGT+GGG | 0.570036 | 3.2:-84091401 | None:intergenic |
| GAGTGATACGTTGGTTTGGT+TGG | 0.571674 | 3.2:-84091273 | None:intergenic |
| TGCATTGGCAAAGATGAGCC+GGG | 0.576228 | 3.2:-84092651 | None:intergenic |
| TTTGAATGGTAGCCCAGTCA+AGG | 0.578981 | 3.2:+84092742 | MS.gene78696:CDS |
| AGAACTTCTTCCTCTTGGGT+CGG | 0.580984 | 3.2:+84092616 | MS.gene78696:CDS |
| AGCAGCGTCGGAGAGGATGA+CGG | 0.586515 | 3.2:-84091480 | None:intergenic |
| TGCGACGCTGAGTGATACGT+TGG | 0.588549 | 3.2:-84091282 | None:intergenic |
| CAAAGCTGCTTTAAAATCAG+TGG | 0.588821 | 3.2:-84091591 | None:intergenic |
| TAGTCGAGGTGGAATACTCA+TGG | 0.595090 | 3.2:-84093215 | None:intergenic |
| GGTCGGTCAACAACGCAACC+CGG | 0.601235 | 3.2:+84092633 | MS.gene78696:CDS |
| CACTATACTTCAAAGGAGCG+TGG | 0.606664 | 3.2:+84092672 | MS.gene78696:CDS |
| CCCTAAGATCACCCAACAAG+AGG | 0.607235 | 3.2:-84093322 | None:intergenic |
| ACACGCCGTCGACGAAAGAG+AGG | 0.607937 | 3.2:-84091520 | None:intergenic |
| GAAATATATTGGAAACACAA+AGG | 0.608551 | 3.2:-84093114 | None:intergenic |
| AGCGAAGTAGTTGAGATGAT+CGG | 0.609929 | 3.2:-84091444 | None:intergenic |
| AACACAACTTGGAGTGAGAG+TGG | 0.612789 | 3.2:-84091350 | None:intergenic |
| CGGCGGGAGCAGCGTCGGAG+AGG | 0.615687 | 3.2:-84091487 | None:intergenic |
| TACCTTGTTCTGGAAATCAA+CGG | 0.617645 | 3.2:-84091618 | None:intergenic |
| TCATGAAAGGAACCTTGACT+GGG | 0.618368 | 3.2:-84092754 | None:intergenic |
| ATAATCGCTTCTGGTTCTGA+GGG | 0.633560 | 3.2:+84091377 | MS.gene78696:CDS |
| TAATCATAAACAAGAAAGGG+TGG | 0.640706 | 3.2:-84093252 | None:intergenic |
| AGAAGGCACTGAAGCTGCTG+CGG | 0.641571 | 3.2:+84093162 | MS.gene78696:CDS |
| GCTACAAAGTCTAGTCGAGG+TGG | 0.662510 | 3.2:-84093226 | None:intergenic |
| GACCAATGAAGTGAATTCAT+GGG | 0.663853 | 3.2:+84092565 | MS.gene78696:CDS |
| CCGTCGACGAAAGAGAGGAG+AGG | 0.679367 | 3.2:-84091515 | None:intergenic |
| TATGCTAAAGGAGCTAGGTG+TGG | 0.687658 | 3.2:+84093033 | MS.gene78696:CDS |
| TCAGCTACAAAGTCTAGTCG+AGG | 0.690824 | 3.2:-84093229 | None:intergenic |
| GAAGTAGTTGAGATGATCGG+TGG | 0.701068 | 3.2:-84091441 | None:intergenic |
| GCGTTGTTGACCGACCCAAG+AGG | 0.750211 | 3.2:-84092626 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTGATTTTTTAAATTTGATA+TGG | + | chr3.2:84092524-84092543 | MS.gene78696:intron | 10.0% |
| !! | GATTTATTTGAATAACATAA+AGG | - | chr3.2:84092114-84092133 | None:intergenic | 15.0% |
| !! | TTAAATTTGATATGGTTTAA+AGG | + | chr3.2:84092532-84092551 | MS.gene78696:intron | 15.0% |
| !! | AAGATAGAAAAACATTCTAA+TGG | - | chr3.2:84091984-84092003 | None:intergenic | 20.0% |
| !! | ATAAGCTTATATGAATGAAA+AGG | - | chr3.2:84091927-84091946 | None:intergenic | 20.0% |
| !! | TAAATGTATATCAAGCAAAA+AGG | + | chr3.2:84092161-84092180 | MS.gene78696:intron | 20.0% |
| !! | TAGTACTACAAAAATTTAAG+TGG | - | chr3.2:84092258-84092277 | None:intergenic | 20.0% |
| !!! | AAATTTTTGTAGTACTAAAG+AGG | + | chr3.2:84092261-84092280 | MS.gene78696:intron | 20.0% |
| !!! | AATTTTTGTAGTACTAAAGA+GGG | + | chr3.2:84092262-84092281 | MS.gene78696:intron | 20.0% |
| !!! | ATGATAAGCTTTTAAGATTT+AGG | + | chr3.2:84091731-84091750 | MS.gene78696:intron | 20.0% |
| !!! | TGATAAGCTTTTAAGATTTA+GGG | + | chr3.2:84091732-84091751 | MS.gene78696:intron | 20.0% |
| ! | CCAAAGTTCAATATTTCATT+TGG | + | chr3.2:84092995-84093014 | MS.gene78696:CDS | 25.0% |
| ! | CCAAATGAAATATTGAACTT+TGG | - | chr3.2:84092998-84093017 | None:intergenic | 25.0% |
| ! | CTCTAATCATAAACAAGAAA+GGG | - | chr3.2:84093258-84093277 | None:intergenic | 25.0% |
| ! | GAAAGACTTGTGAAATATAT+TGG | - | chr3.2:84093128-84093147 | None:intergenic | 25.0% |
| ! | GAAATATATTGGAAACACAA+AGG | - | chr3.2:84093117-84093136 | None:intergenic | 25.0% |
| ! | TCTCTAATCATAAACAAGAA+AGG | - | chr3.2:84093259-84093278 | None:intergenic | 25.0% |
| ! | TTATTTATAGCTTACGTGTT+TGG | - | chr3.2:84091821-84091840 | None:intergenic | 25.0% |
| !! | AGAAGAATTGAACATTTTGT+TGG | - | chr3.2:84092460-84092479 | None:intergenic | 25.0% |
| !!! | TTTGATGGTTTTAAAGTTCT+TGG | + | chr3.2:84092806-84092825 | MS.gene78696:CDS | 25.0% |
| ATGAATGAAAAGGACTCATT+CGG | - | chr3.2:84091917-84091936 | None:intergenic | 30.0% | |
| ATGATTAGAGAAGATTTGAC+TGG | + | chr3.2:84093268-84093287 | MS.gene78696:CDS | 30.0% | |
| ATTAAAGAACTTCTTCCTCT+TGG | + | chr3.2:84092611-84092630 | MS.gene78696:CDS | 30.0% | |
| GAGGAAGAAGTTCTTTAATA+AGG | - | chr3.2:84092610-84092629 | None:intergenic | 30.0% | |
| GCATTACAAGCTAAATTAGT+TGG | - | chr3.2:84092425-84092444 | None:intergenic | 30.0% | |
| TAACATAAAGGTTTGTCACA+TGG | - | chr3.2:84092102-84092121 | None:intergenic | 30.0% | |
| TAATCATAAACAAGAAAGGG+TGG | - | chr3.2:84093255-84093274 | None:intergenic | 30.0% | |
| TATAAGCTTATAAGCTAAGC+TGG | + | chr3.2:84091936-84091955 | MS.gene78696:intron | 30.0% | |
| TGAAACTTCTGATATGCTAA+AGG | + | chr3.2:84093021-84093040 | MS.gene78696:CDS | 30.0% | |
| TGAAAGCTGTGGTATATATT+TGG | + | chr3.2:84092006-84092025 | MS.gene78696:intron | 30.0% | |
| TGCTTGATATACATTTACGA+AGG | - | chr3.2:84092158-84092177 | None:intergenic | 30.0% | |
| TTAAAGAACTTCTTCCTCTT+GGG | + | chr3.2:84092612-84092631 | MS.gene78696:CDS | 30.0% | |
| TTCATTGAAGTGAATGAAGA+AGG | + | chr3.2:84093145-84093164 | MS.gene78696:CDS | 30.0% | |
| TTCTATCTTAATGAAAGCTG+TGG | + | chr3.2:84091995-84092014 | MS.gene78696:intron | 30.0% | |
| TTCTTCCAAATGCAAAAGAT+GGG | + | chr3.2:84092879-84092898 | MS.gene78696:CDS | 30.0% | |
| TTTCTTCCAAATGCAAAAGA+TGG | + | chr3.2:84092878-84092897 | MS.gene78696:CDS | 30.0% | |
| ! | AATAAACTGCTTCTTTTTGC+TGG | - | chr3.2:84092780-84092799 | None:intergenic | 30.0% |
| ! | CAGTTTATTAGAGCTTTTGA+TGG | + | chr3.2:84092791-84092810 | MS.gene78696:CDS | 30.0% |
| ! | GGTAACTATCATTTTCTCAT+GGG | - | chr3.2:84091896-84091915 | None:intergenic | 30.0% |
| ! | TTAAGATTTAGGGTCTATCT+CGG | + | chr3.2:84091742-84091761 | MS.gene78696:intron | 30.0% |
| AACAATCATCTTTGTTGGAC+AGG | + | chr3.2:84093291-84093310 | MS.gene78696:CDS | 35.0% | |
| AAGCTGTGGTATATATTTGG+AGG | + | chr3.2:84092009-84092028 | MS.gene78696:intron | 35.0% | |
| AAGGAAAGACAAACAGGTAT+AGG | - | chr3.2:84092139-84092158 | None:intergenic | 35.0% | |
| ACTGGAACAATCATCTTTGT+TGG | + | chr3.2:84093286-84093305 | MS.gene78696:CDS | 35.0% | |
| CATAGAAACATACCTTGTTC+TGG | - | chr3.2:84091631-84091650 | None:intergenic | 35.0% | |
| CGATTATGCTTAACACAACT+TGG | - | chr3.2:84091364-84091383 | None:intergenic | 35.0% | |
| CTGCTGCATCTATATTGTTA+AGG | + | chr3.2:84093188-84093207 | MS.gene78696:CDS | 35.0% | |
| GACCAATGAAGTGAATTCAT+GGG | + | chr3.2:84092565-84092584 | MS.gene78696:CDS | 35.0% | |
| GATGTTGTTGTCTGATTCTT+TGG | - | chr3.2:84091321-84091340 | None:intergenic | 35.0% | |
| TGACCAATGAAGTGAATTCA+TGG | + | chr3.2:84092564-84092583 | MS.gene78696:CDS | 35.0% | |
| TGGATACTAGAAAACAGCAA+AGG | - | chr3.2:84092405-84092424 | None:intergenic | 35.0% | |
| TTATCTTCGCCTTGCTTATA+AGG | - | chr3.2:84092836-84092855 | None:intergenic | 35.0% | |
| TTTACGAAGGAAAGACAAAC+AGG | - | chr3.2:84092145-84092164 | None:intergenic | 35.0% | |
| ! | CGGTAACTATCATTTTCTCA+TGG | - | chr3.2:84091897-84091916 | None:intergenic | 35.0% |
| ! | TACGAGTTTCACCTTTTGAA+TGG | + | chr3.2:84092728-84092747 | MS.gene78696:CDS | 35.0% |
| ! | TTCTTTTTGCTGGTCATGAA+AGG | - | chr3.2:84092770-84092789 | None:intergenic | 35.0% |
| !! | CAAAGCTGCTTTAAAATCAG+TGG | - | chr3.2:84091594-84091613 | None:intergenic | 35.0% |
| !! | TACCTTGTTCTGGAAATCAA+CGG | - | chr3.2:84091621-84091640 | None:intergenic | 35.0% |
| !! | TCCTTTGAAGTATAGTGCAT+TGG | - | chr3.2:84092669-84092688 | None:intergenic | 35.0% |
| AAGTGGAAGTAGGTGACTTT+AGG | + | chr3.2:84092969-84092988 | MS.gene78696:CDS | 40.0% | |
| AGCCCATGAATTCACTTCAT+TGG | - | chr3.2:84092570-84092589 | None:intergenic | 40.0% | |
| AGCGAAGTAGTTGAGATGAT+CGG | - | chr3.2:84091447-84091466 | None:intergenic | 40.0% | |
| CAAGCTTCCTCTTGAAAAAG+TGG | + | chr3.2:84092952-84092971 | MS.gene78696:CDS | 40.0% | |
| CCTCTTGAAAAAGTGGAAGT+AGG | + | chr3.2:84092959-84092978 | MS.gene78696:CDS | 40.0% | |
| GAAGGAAGGTTGAAGAGAAA+GGG | - | chr3.2:84091558-84091577 | None:intergenic | 40.0% | |
| GCCAATGCACTATACTTCAA+AGG | + | chr3.2:84092665-84092684 | MS.gene78696:CDS | 40.0% | |
| GTGTTAAGCATAATCGCTTC+TGG | + | chr3.2:84091368-84091387 | MS.gene78696:CDS | 40.0% | |
| TCATGAAAGGAACCTTGACT+GGG | - | chr3.2:84092757-84092776 | None:intergenic | 40.0% | |
| TCCAAATGCAAAAGATGGGT+TGG | + | chr3.2:84092883-84092902 | MS.gene78696:CDS | 40.0% | |
| TCTGATATGCTAAAGGAGCT+AGG | + | chr3.2:84093028-84093047 | MS.gene78696:CDS | 40.0% | |
| TTGAAAAGTTCCTGTTGCGT+GGG | - | chr3.2:84091404-84091423 | None:intergenic | 40.0% | |
| ! | CTTGGTCTTCCTTATAAGCA+AGG | + | chr3.2:84092824-84092843 | MS.gene78696:CDS | 40.0% |
| !! | ATAATCGCTTCTGGTTCTGA+GGG | + | chr3.2:84091377-84091396 | MS.gene78696:CDS | 40.0% |
| !! | TTCCGTTGATTTCCAGAACA+AGG | + | chr3.2:84091616-84091635 | MS.gene78696:CDS | 40.0% |
| !!! | CCTACTTCCACTTTTTCAAG+AGG | - | chr3.2:84092962-84092981 | None:intergenic | 40.0% |
| AACACAACTTGGAGTGAGAG+TGG | - | chr3.2:84091353-84091372 | None:intergenic | 45.0% | |
| AATCAGTGGCGACGATTTGT+TGG | - | chr3.2:84091580-84091599 | None:intergenic | 45.0% | |
| AGAACTTCTTCCTCTTGGGT+CGG | + | chr3.2:84092616-84092635 | MS.gene78696:CDS | 45.0% | |
| AGGTGCTCAATCCTCTTGTT+GGG | + | chr3.2:84093311-84093330 | MS.gene78696:CDS | 45.0% | |
| CACTATACTTCAAAGGAGCG+TGG | + | chr3.2:84092672-84092691 | MS.gene78696:CDS | 45.0% | |
| GAAGTAGTTGAGATGATCGG+TGG | - | chr3.2:84091444-84091463 | None:intergenic | 45.0% | |
| GGAAGGAAGGTTGAAGAGAA+AGG | - | chr3.2:84091559-84091578 | None:intergenic | 45.0% | |
| GTCATGAAAGGAACCTTGAC+TGG | - | chr3.2:84092758-84092777 | None:intergenic | 45.0% | |
| GTTGAAAAGTTCCTGTTGCG+TGG | - | chr3.2:84091405-84091424 | None:intergenic | 45.0% | |
| TAGTCGAGGTGGAATACTCA+TGG | - | chr3.2:84093218-84093237 | None:intergenic | 45.0% | |
| TATGCTAAAGGAGCTAGGTG+TGG | + | chr3.2:84093033-84093052 | MS.gene78696:CDS | 45.0% | |
| TCAGCTACAAAGTCTAGTCG+AGG | - | chr3.2:84093232-84093251 | None:intergenic | 45.0% | |
| TCTGCAATTCCCTGCTACAA+TGG | + | chr3.2:84092209-84092228 | MS.gene78696:intron | 45.0% | |
| TGACTGGGCTACCATTCAAA+AGG | - | chr3.2:84092742-84092761 | None:intergenic | 45.0% | |
| TGGGCTGACAAAGAGACAAA+TGG | + | chr3.2:84092584-84092603 | MS.gene78696:CDS | 45.0% | |
| TGGTGGAGGTCTCACAAAAA+TGG | + | chr3.2:84093069-84093088 | MS.gene78696:CDS | 45.0% | |
| TGTGAAGAGCCATTGTAGCA+GGG | - | chr3.2:84092221-84092240 | None:intergenic | 45.0% | |
| TTTGAATGGTAGCCCAGTCA+AGG | + | chr3.2:84092742-84092761 | MS.gene78696:CDS | 45.0% | |
| ! | GATGATCGGTGGATTTGGAT+TGG | - | chr3.2:84091433-84091452 | None:intergenic | 45.0% |
| ! | GCCAACCCATCTTTTGCATT+TGG | - | chr3.2:84092887-84092906 | None:intergenic | 45.0% |
| ! | GTTGAGATGATCGGTGGATT+TGG | - | chr3.2:84091438-84091457 | None:intergenic | 45.0% |
| ! | GTTTTACCTTTCTCTGGTGG+AGG | + | chr3.2:84093055-84093074 | MS.gene78696:CDS | 45.0% |
| !! | AAAAGATGGGTTGGCAGCAT+TGG | + | chr3.2:84092892-84092911 | MS.gene78696:CDS | 45.0% |
| !! | CATAATCGCTTCTGGTTCTG+AGG | + | chr3.2:84091376-84091395 | MS.gene78696:CDS | 45.0% |
| !! | GAGTGATACGTTGGTTTGGT+TGG | - | chr3.2:84091276-84091295 | None:intergenic | 45.0% |
| !! | GGTGTGGTTTTACCTTTCTC+TGG | + | chr3.2:84093049-84093068 | MS.gene78696:CDS | 45.0% |
| !! | GTGGTTTTACCTTTCTCTGG+TGG | + | chr3.2:84093052-84093071 | MS.gene78696:CDS | 45.0% |
| !! | GTTGGCAGCATTGGTTGAAA+AGG | + | chr3.2:84092901-84092920 | MS.gene78696:CDS | 45.0% |
| CAGGTGCTCAATCCTCTTGT+TGG | + | chr3.2:84093310-84093329 | MS.gene78696:CDS | 50.0% | |
| CTGTGAAGAGCCATTGTAGC+AGG | - | chr3.2:84092222-84092241 | None:intergenic | 50.0% | |
| GCTACAAAGTCTAGTCGAGG+TGG | - | chr3.2:84093229-84093248 | None:intergenic | 50.0% | |
| ! | CGCTGAGTGATACGTTGGTT+TGG | - | chr3.2:84091280-84091299 | None:intergenic | 50.0% |
| ! | GATCGGTGGATTTGGATTGG+AGG | - | chr3.2:84091430-84091449 | None:intergenic | 50.0% |
| ! | GTGCATTGGCAAAGATGAGC+CGG | - | chr3.2:84092655-84092674 | None:intergenic | 50.0% |
| ! | TGCATTGGCAAAGATGAGCC+GGG | - | chr3.2:84092654-84092673 | None:intergenic | 50.0% |
| !! | AGTGGCGACGATTTGTTGGA+AGG | - | chr3.2:84091576-84091595 | None:intergenic | 50.0% |
| !! | GCGACGATTTGTTGGAAGGA+AGG | - | chr3.2:84091572-84091591 | None:intergenic | 50.0% |
| !! | GGCAGCATTGGTTGAAAAGG+TGG | + | chr3.2:84092904-84092923 | MS.gene78696:CDS | 50.0% |
| CCTCTCCTCTCTTTCGTCGA+CGG | + | chr3.2:84091515-84091534 | MS.gene78696:CDS | 55.0% | |
| GTGAGACCTCCACCAGAGAA+AGG | - | chr3.2:84093064-84093083 | None:intergenic | 55.0% | |
| TGCGACGCTGAGTGATACGT+TGG | - | chr3.2:84091285-84091304 | None:intergenic | 55.0% | |
| !! | AGAAGGCACTGAAGCTGCTG+CGG | + | chr3.2:84093162-84093181 | MS.gene78696:CDS | 55.0% |
| ACACGCCGTCGACGAAAGAG+AGG | - | chr3.2:84091523-84091542 | None:intergenic | 60.0% | |
| CCGTCGACGAAAGAGAGGAG+AGG | - | chr3.2:84091518-84091537 | None:intergenic | 60.0% | |
| CTCTTTCGTCGACGGCGTGT+GGG | + | chr3.2:84091523-84091542 | MS.gene78696:CDS | 60.0% | |
| GAAAGAGAGGAGAGGACCGC+CGG | - | chr3.2:84091510-84091529 | None:intergenic | 60.0% | |
| GCGTTGTTGACCGACCCAAG+AGG | - | chr3.2:84092629-84092648 | None:intergenic | 60.0% | |
| GGTCGGTCAACAACGCAACC+CGG | + | chr3.2:84092633-84092652 | MS.gene78696:CDS | 60.0% | |
| TCTCTTTCGTCGACGGCGTG+TGG | + | chr3.2:84091522-84091541 | MS.gene78696:CDS | 60.0% | |
| ! | AGCAGCGTCGGAGAGGATGA+CGG | - | chr3.2:84091483-84091502 | None:intergenic | 60.0% |
| ! | TTCTGAGGGTCCCACGCAAC+AGG | + | chr3.2:84091391-84091410 | MS.gene78696:CDS | 60.0% |
| AGAGAGGAGAGGACCGCCGG+CGG | - | chr3.2:84091507-84091526 | None:intergenic | 70.0% | |
| CTCTCCGACGCTGCTCCCGC+CGG | + | chr3.2:84091488-84091507 | MS.gene78696:CDS | 75.0% | |
| GAGAGGAGAGGACCGCCGGC+GGG | - | chr3.2:84091506-84091525 | None:intergenic | 75.0% | |
| ! | ACCGCCGGCGGGAGCAGCGT+CGG | - | chr3.2:84091495-84091514 | None:intergenic | 80.0% |
| ! | TCCGACGCTGCTCCCGCCGG+CGG | + | chr3.2:84091491-84091510 | MS.gene78696:CDS | 80.0% |
| !! | CGGCGGGAGCAGCGTCGGAG+AGG | - | chr3.2:84091490-84091509 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 84091251 | 84093336 | 84091251 | ID=MS.gene78696 |
| chr3.2 | mRNA | 84091251 | 84093336 | 84091251 | ID=MS.gene78696.t1;Parent=MS.gene78696 |
| chr3.2 | exon | 84091251 | 84091637 | 84091251 | ID=MS.gene78696.t1.exon1;Parent=MS.gene78696.t1 |
| chr3.2 | CDS | 84091251 | 84091637 | 84091251 | ID=cds.MS.gene78696.t1;Parent=MS.gene78696.t1 |
| chr3.2 | exon | 84092554 | 84093336 | 84092554 | ID=MS.gene78696.t1.exon2;Parent=MS.gene78696.t1 |
| chr3.2 | CDS | 84092554 | 84093336 | 84092554 | ID=cds.MS.gene78696.t1;Parent=MS.gene78696.t1 |
| Gene Sequence |
| Protein sequence |
