Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054601.t1 | XP_003602973.1 | 97.4 | 389 | 10 | 0 | 1 | 389 | 1 | 389 | 9.00E-211 | 742.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054601.t1 | Q9S7T8 | 56.9 | 390 | 165 | 3 | 1 | 387 | 1 | 390 | 3.4e-126 | 453.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054601.t1 | G7J5Q8 | 97.4 | 389 | 10 | 0 | 1 | 389 | 1 | 389 | 6.5e-211 | 742.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene054601 | MS.gene060237 | 0.826652 | 2.41E-54 | -1.69E-46 |
| MS.gene054601 | MS.gene42091 | 0.806578 | 7.69E-50 | -1.69E-46 |
| MS.gene054601 | MS.gene78696 | 0.968103 | 3.33E-128 | -1.69E-46 |
| MS.gene054601 | MS.gene91301 | 0.806262 | 8.96E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene006610 | MS.gene054601 | PPI |
| MS.gene031697 | MS.gene054601 | PPI |
| MS.gene054601 | MS.gene045585 | PPI |
| MS.gene054601 | MS.gene065944 | PPI |
| MS.gene065945 | MS.gene054601 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054601.t1 | MTR_3g101010 | 97.429 | 389 | 10 | 0 | 1 | 389 | 1 | 389 | 0.0 | 771 |
| MS.gene054601.t1 | MTR_3g101030 | 73.116 | 398 | 87 | 4 | 10 | 389 | 34 | 429 | 0.0 | 579 |
| MS.gene054601.t1 | MTR_4g045707 | 74.160 | 387 | 96 | 2 | 4 | 389 | 5 | 388 | 0.0 | 574 |
| MS.gene054601.t1 | MTR_3g018740 | 72.165 | 388 | 105 | 2 | 1 | 387 | 1 | 386 | 0.0 | 557 |
| MS.gene054601.t1 | MTR_8g027395 | 70.026 | 387 | 112 | 1 | 3 | 389 | 15 | 397 | 0.0 | 548 |
| MS.gene054601.t1 | MTR_8g461160 | 70.543 | 387 | 110 | 2 | 5 | 387 | 6 | 392 | 0.0 | 540 |
| MS.gene054601.t1 | MTR_3g101050 | 73.368 | 383 | 79 | 6 | 9 | 387 | 33 | 396 | 0.0 | 525 |
| MS.gene054601.t1 | MTR_8g027420 | 67.442 | 387 | 111 | 2 | 3 | 389 | 4 | 375 | 0.0 | 523 |
| MS.gene054601.t1 | MTR_3g101180 | 66.917 | 399 | 121 | 4 | 1 | 388 | 1 | 399 | 0.0 | 521 |
| MS.gene054601.t1 | MTR_3g048000 | 67.708 | 384 | 103 | 3 | 6 | 388 | 28 | 391 | 0.0 | 520 |
| MS.gene054601.t1 | MTR_2g046030 | 66.752 | 391 | 121 | 3 | 1 | 387 | 1 | 386 | 0.0 | 512 |
| MS.gene054601.t1 | MTR_7g451890 | 65.296 | 389 | 131 | 2 | 5 | 389 | 14 | 402 | 0.0 | 509 |
| MS.gene054601.t1 | MTR_2g045980 | 66.496 | 391 | 122 | 3 | 1 | 387 | 1 | 386 | 0.0 | 508 |
| MS.gene054601.t1 | MTR_4g088525 | 68.767 | 365 | 110 | 1 | 24 | 388 | 8 | 368 | 3.99e-179 | 503 |
| MS.gene054601.t1 | MTR_7g047780 | 65.296 | 389 | 131 | 2 | 5 | 389 | 14 | 402 | 7.07e-178 | 501 |
| MS.gene054601.t1 | MTR_3g101130 | 64.267 | 389 | 132 | 3 | 4 | 389 | 5 | 389 | 9.79e-177 | 497 |
| MS.gene054601.t1 | MTR_7g050750 | 63.427 | 391 | 139 | 2 | 3 | 389 | 6 | 396 | 3.41e-176 | 496 |
| MS.gene054601.t1 | MTR_7g050810 | 63.359 | 393 | 132 | 3 | 5 | 389 | 16 | 404 | 7.17e-176 | 496 |
| MS.gene054601.t1 | MTR_4g088535 | 65.104 | 384 | 114 | 3 | 5 | 388 | 7 | 370 | 7.55e-171 | 482 |
| MS.gene054601.t1 | MTR_3g015620 | 62.532 | 387 | 117 | 4 | 5 | 387 | 16 | 378 | 1.82e-157 | 448 |
| MS.gene054601.t1 | MTR_3g102920 | 61.316 | 380 | 107 | 5 | 13 | 388 | 66 | 409 | 7.65e-152 | 435 |
| MS.gene054601.t1 | MTR_3g100995 | 78.988 | 257 | 51 | 2 | 133 | 389 | 11 | 264 | 4.61e-146 | 415 |
| MS.gene054601.t1 | MTR_3g101190 | 54.499 | 389 | 100 | 3 | 1 | 389 | 1 | 312 | 8.65e-139 | 398 |
| MS.gene054601.t1 | MTR_3g101200 | 55.155 | 388 | 147 | 4 | 3 | 388 | 29 | 391 | 1.86e-135 | 393 |
| MS.gene054601.t1 | MTR_3g100010 | 61.465 | 314 | 73 | 2 | 30 | 310 | 42 | 340 | 7.13e-125 | 364 |
| MS.gene054601.t1 | MTR_3g018747 | 70.000 | 260 | 62 | 3 | 129 | 387 | 9 | 253 | 7.81e-124 | 358 |
| MS.gene054601.t1 | MTR_7g050830 | 56.688 | 314 | 103 | 3 | 5 | 296 | 16 | 318 | 3.58e-118 | 346 |
| MS.gene054601.t1 | MTR_3g015760 | 62.362 | 271 | 98 | 2 | 118 | 387 | 12 | 279 | 3.02e-107 | 317 |
| MS.gene054601.t1 | MTR_3g111160 | 74.762 | 210 | 50 | 2 | 181 | 389 | 13 | 220 | 1.60e-100 | 297 |
| MS.gene054601.t1 | MTR_3g100520 | 65.315 | 222 | 62 | 3 | 170 | 389 | 1 | 209 | 8.00e-97 | 288 |
| MS.gene054601.t1 | MTR_3g099970 | 69.898 | 196 | 42 | 2 | 129 | 324 | 20 | 198 | 4.17e-90 | 270 |
| MS.gene054601.t1 | MTR_3g114310 | 42.105 | 399 | 208 | 12 | 6 | 389 | 20 | 410 | 1.22e-88 | 274 |
| MS.gene054601.t1 | MTR_3g101110 | 60.581 | 241 | 61 | 4 | 129 | 363 | 68 | 280 | 3.24e-88 | 268 |
| MS.gene054601.t1 | MTR_2g046410 | 66.019 | 206 | 64 | 2 | 186 | 387 | 144 | 347 | 4.63e-87 | 268 |
| MS.gene054601.t1 | MTR_3g101020 | 70.899 | 189 | 24 | 3 | 203 | 389 | 1 | 160 | 5.50e-83 | 250 |
| MS.gene054601.t1 | MTR_3g101150 | 68.354 | 158 | 46 | 2 | 235 | 388 | 1 | 158 | 1.80e-68 | 213 |
| MS.gene054601.t1 | MTR_3g111150 | 61.017 | 177 | 45 | 2 | 7 | 183 | 1 | 153 | 6.69e-67 | 209 |
| MS.gene054601.t1 | MTR_3g102870 | 63.291 | 158 | 58 | 0 | 194 | 351 | 3 | 160 | 1.49e-63 | 201 |
| MS.gene054601.t1 | MTR_3g100990 | 69.925 | 133 | 40 | 0 | 1 | 133 | 1 | 133 | 4.53e-56 | 192 |
| MS.gene054601.t1 | MTR_4g093550 | 68.605 | 86 | 27 | 0 | 3 | 88 | 4 | 89 | 4.53e-32 | 117 |
| MS.gene054601.t1 | MTR_6g046890 | 70.238 | 84 | 22 | 1 | 13 | 96 | 7 | 87 | 8.05e-29 | 109 |
| MS.gene054601.t1 | MTR_3g101140 | 63.768 | 69 | 24 | 1 | 322 | 389 | 48 | 116 | 1.22e-18 | 81.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054601.t1 | AT1G47710 | 56.923 | 390 | 165 | 3 | 1 | 387 | 1 | 390 | 2.32e-163 | 464 |
| MS.gene054601.t1 | AT1G47710 | 56.923 | 390 | 165 | 3 | 1 | 387 | 28 | 417 | 1.62e-162 | 462 |
| MS.gene054601.t1 | AT3G45220 | 48.232 | 396 | 189 | 6 | 1 | 386 | 1 | 390 | 9.87e-129 | 375 |
| MS.gene054601.t1 | AT2G26390 | 49.747 | 396 | 179 | 8 | 1 | 386 | 1 | 386 | 1.04e-125 | 368 |
| MS.gene054601.t1 | AT2G25240 | 48.214 | 392 | 187 | 8 | 1 | 386 | 1 | 382 | 2.64e-123 | 362 |
| MS.gene054601.t1 | AT2G14540 | 45.269 | 391 | 187 | 6 | 1 | 386 | 29 | 397 | 9.61e-106 | 317 |
| MS.gene054601.t1 | AT1G62170 | 42.893 | 394 | 193 | 6 | 1 | 386 | 62 | 431 | 3.34e-104 | 315 |
| MS.gene054601.t1 | AT1G64030 | 43.367 | 392 | 195 | 6 | 1 | 386 | 1 | 371 | 4.60e-103 | 310 |
| MS.gene054601.t1 | AT1G62170 | 39.578 | 427 | 193 | 7 | 1 | 386 | 62 | 464 | 4.80e-97 | 297 |
| MS.gene054601.t1 | AT2G35580 | 40.967 | 393 | 189 | 9 | 1 | 386 | 15 | 371 | 5.75e-95 | 289 |
| MS.gene054601.t1 | AT1G64010 | 48.624 | 218 | 88 | 4 | 170 | 386 | 1 | 195 | 5.28e-65 | 206 |
| MS.gene054601.t1 | AT1G64010 | 47.783 | 203 | 82 | 4 | 185 | 386 | 2 | 181 | 3.35e-57 | 185 |
| MS.gene054601.t1 | AT1G63280 | 60.000 | 115 | 42 | 2 | 129 | 241 | 8 | 120 | 9.64e-41 | 140 |
| MS.gene054601.t1 | AT1G62160 | 38.009 | 221 | 109 | 4 | 171 | 386 | 21 | 218 | 3.02e-35 | 129 |
| MS.gene054601.t1 | AT1G51330 | 54.054 | 111 | 48 | 2 | 128 | 235 | 30 | 140 | 5.17e-30 | 114 |
| MS.gene054601.t1 | AT1G64020 | 31.707 | 123 | 77 | 4 | 1 | 119 | 1 | 120 | 3.27e-12 | 63.5 |
Find 89 sgRNAs with CRISPR-Local
Find 131 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGGAAGAAGTTCTTTAATA+AGG | 0.229650 | 3.4:-88976552 | None:intergenic |
| TTATCTTCGCCTTGCTTATA+AGG | 0.250540 | 3.4:-88976778 | None:intergenic |
| GATGTTGTTGTCTGATTCTT+TGG | 0.267730 | 3.4:-88975263 | None:intergenic |
| GAAAGACTTGTGAAATATAT+TGG | 0.284781 | 3.4:-88977070 | None:intergenic |
| AAGTGGAAGTAGGTGACTTT+AGG | 0.307716 | 3.4:+88976914 | MS.gene054601:CDS |
| CCAAAGTTCAATATTTCATT+TGG | 0.319061 | 3.4:+88976940 | MS.gene054601:CDS |
| CATAGAAACATACCTTGTTC+TGG | 0.320072 | 3.4:-88975573 | None:intergenic |
| GTTGAGATGATCGGTGGATT+TGG | 0.324906 | 3.4:-88975380 | None:intergenic |
| GTGTTAAGCATAATCGCTTC+TGG | 0.336647 | 3.4:+88975313 | MS.gene054601:CDS |
| TTTCTTCCAAATGCAAAAGA+TGG | 0.368008 | 3.4:+88976823 | MS.gene054601:CDS |
| ACTGGAACAATCATCTTTGT+TGG | 0.369413 | 3.4:+88977231 | MS.gene054601:CDS |
| ATTAAAGAACTTCTTCCTCT+TGG | 0.374691 | 3.4:+88976556 | MS.gene054601:CDS |
| CAGGTGCTCAATCCTCTTGT+TGG | 0.380464 | 3.4:+88977255 | MS.gene054601:CDS |
| AGCCCATGAATTCACTTCAT+TGG | 0.383156 | 3.4:-88976512 | None:intergenic |
| TTAAAGAACTTCTTCCTCTT+GGG | 0.399952 | 3.4:+88976557 | MS.gene054601:CDS |
| CTGCTGCATCTATATTGTTA+AGG | 0.411072 | 3.4:+88977133 | MS.gene054601:CDS |
| GAAAGAGAGGAGAGGACCGC+CGG | 0.415990 | 3.4:-88975452 | None:intergenic |
| AGGTGCTCAATCCTCTTGTT+GGG | 0.421016 | 3.4:+88977256 | MS.gene054601:CDS |
| AATCAGTGGCGACGATTTGT+TGG | 0.421422 | 3.4:-88975522 | None:intergenic |
| CGATTATGCTTAACACAACT+TGG | 0.425025 | 3.4:-88975306 | None:intergenic |
| GGAAGGAAGGTTGAAGAGAA+AGG | 0.426729 | 3.4:-88975501 | None:intergenic |
| TGACCAATGAAGTGAATTCA+TGG | 0.438108 | 3.4:+88976509 | MS.gene054601:CDS |
| AACAATCATCTTTGTTGGAC+AGG | 0.442686 | 3.4:+88977236 | MS.gene054601:CDS |
| TCTCTAATCATAAACAAGAA+AGG | 0.443816 | 3.4:-88977201 | None:intergenic |
| CCAAATGAAATATTGAACTT+TGG | 0.444637 | 3.4:-88976940 | None:intergenic |
| GTCATGAAAGGAACCTTGAC+TGG | 0.444676 | 3.4:-88976700 | None:intergenic |
| CGCTGAGTGATACGTTGGTT+TGG | 0.454352 | 3.4:-88975222 | None:intergenic |
| TTCATTGAAGTGAATGAAGA+AGG | 0.456815 | 3.4:+88977090 | MS.gene054601:CDS |
| CTCTAATCATAAACAAGAAA+GGG | 0.468439 | 3.4:-88977200 | None:intergenic |
| TCTCTTTCGTCGACGGCGTG+TGG | 0.470722 | 3.4:+88975467 | MS.gene054601:CDS |
| GAAGGAAGGTTGAAGAGAAA+GGG | 0.477583 | 3.4:-88975500 | None:intergenic |
| ACCGCCGGCGGGAGCAGCGT+CGG | 0.480997 | 3.4:-88975437 | None:intergenic |
| ATGATTAGAGAAGATTTGAC+TGG | 0.486911 | 3.4:+88977213 | MS.gene054601:CDS |
| CTCTTTCGTCGACGGCGTGT+GGG | 0.489030 | 3.4:+88975468 | MS.gene054601:CDS |
| GTGAGACCTCCACCAGAGAA+AGG | 0.492502 | 3.4:-88977006 | None:intergenic |
| TTCTTCCAAATGCAAAAGAT+GGG | 0.493850 | 3.4:+88976824 | MS.gene054601:CDS |
| GATGATCGGTGGATTTGGAT+TGG | 0.502023 | 3.4:-88975375 | None:intergenic |
| GGCAGCATTGGTTGAAAAGG+TGG | 0.507398 | 3.4:+88976849 | MS.gene054601:CDS |
| GCGACGATTTGTTGGAAGGA+AGG | 0.507919 | 3.4:-88975514 | None:intergenic |
| CATAATCGCTTCTGGTTCTG+AGG | 0.508427 | 3.4:+88975321 | MS.gene054601:CDS |
| AAAAGATGGGTTGGCAGCAT+TGG | 0.509349 | 3.4:+88976837 | MS.gene054601:CDS |
| GTGCATTGGCAAAGATGAGC+CGG | 0.510572 | 3.4:-88976597 | None:intergenic |
| TGAAACTTCTGATATGCTAA+AGG | 0.511157 | 3.4:+88976966 | MS.gene054601:CDS |
| TCCTTTGAAGTATAGTGCAT+TGG | 0.511249 | 3.4:-88976611 | None:intergenic |
| TCCAAATGCAAAAGATGGGT+TGG | 0.513480 | 3.4:+88976828 | MS.gene054601:CDS |
| GATCGGTGGATTTGGATTGG+AGG | 0.520767 | 3.4:-88975372 | None:intergenic |
| GTTGGCAGCATTGGTTGAAA+AGG | 0.523393 | 3.4:+88976846 | MS.gene054601:CDS |
| CTTGGTCTTCCTTATAAGCA+AGG | 0.532609 | 3.4:+88976769 | MS.gene054601:CDS |
| TGACTGGGCTACCATTCAAA+AGG | 0.534936 | 3.4:-88976684 | None:intergenic |
| CTCTCCGACGCTGCTCCCGC+CGG | 0.545449 | 3.4:+88975433 | MS.gene054601:CDS |
| CCTCTCCTCTCTTTCGTCGA+CGG | 0.547618 | 3.4:+88975460 | MS.gene054601:CDS |
| AGAGAGGAGAGGACCGCCGG+CGG | 0.548453 | 3.4:-88975449 | None:intergenic |
| TCCGACGCTGCTCCCGCCGG+CGG | 0.548583 | 3.4:+88975436 | MS.gene054601:CDS |
| GAGAGGAGAGGACCGCCGGC+GGG | 0.549070 | 3.4:-88975448 | None:intergenic |
| GCCAATGCACTATACTTCAA+AGG | 0.552753 | 3.4:+88976610 | MS.gene054601:CDS |
| TGGGCTGACAAAGAGACAAA+TGG | 0.553610 | 3.4:+88976529 | MS.gene054601:CDS |
| TTCCGTTGATTTCCAGAACA+AGG | 0.553793 | 3.4:+88975561 | MS.gene054601:CDS |
| TCTGATATGCTAAAGGAGCT+AGG | 0.556026 | 3.4:+88976973 | MS.gene054601:CDS |
| AGTGGCGACGATTTGTTGGA+AGG | 0.557837 | 3.4:-88975518 | None:intergenic |
| TTGAAAAGTTCTTGTTGCGT+GGG | 0.558109 | 3.4:-88975346 | None:intergenic |
| GAGTGATACGTTGGTTTGGT+TGG | 0.571674 | 3.4:-88975218 | None:intergenic |
| TGCATTGGCAAAGATGAGCC+GGG | 0.576228 | 3.4:-88976596 | None:intergenic |
| TTTGAATGGTAGCCCAGTCA+AGG | 0.578981 | 3.4:+88976687 | MS.gene054601:CDS |
| GTTGAAAAGTTCTTGTTGCG+TGG | 0.579308 | 3.4:-88975347 | None:intergenic |
| AGAACTTCTTCCTCTTGGGT+CGG | 0.580984 | 3.4:+88976561 | MS.gene054601:CDS |
| AGCAGCGTCGGAGAGGATGA+CGG | 0.586515 | 3.4:-88975425 | None:intergenic |
| TGCGACGCTGAGTGATACGT+TGG | 0.588549 | 3.4:-88975227 | None:intergenic |
| CAAAGCTGCTTTAAAATCAG+TGG | 0.588821 | 3.4:-88975536 | None:intergenic |
| TAGTCGAGGTGGAATACTCA+TGG | 0.595090 | 3.4:-88977160 | None:intergenic |
| GGTCGGTCAACAACGCAACC+CGG | 0.601235 | 3.4:+88976578 | MS.gene054601:CDS |
| CACTATACTTCAAAGGAGCG+TGG | 0.606664 | 3.4:+88976617 | MS.gene054601:CDS |
| CCCTAAGATCACCCAACAAG+AGG | 0.607235 | 3.4:-88977267 | None:intergenic |
| ACACGCCGTCGACGAAAGAG+AGG | 0.607937 | 3.4:-88975465 | None:intergenic |
| GAAATATATTGGAAACACAA+AGG | 0.608551 | 3.4:-88977059 | None:intergenic |
| AGCGAAGTAGTTGAGATGAT+CGG | 0.609929 | 3.4:-88975389 | None:intergenic |
| AACACAACTTGGAGTGAGAG+TGG | 0.612789 | 3.4:-88975295 | None:intergenic |
| CGGCGGGAGCAGCGTCGGAG+AGG | 0.615687 | 3.4:-88975432 | None:intergenic |
| TACCTTGTTCTGGAAATCAA+CGG | 0.617645 | 3.4:-88975563 | None:intergenic |
| TCATGAAAGGAACCTTGACT+GGG | 0.618368 | 3.4:-88976699 | None:intergenic |
| ATAATCGCTTCTGGTTCTGA+GGG | 0.633560 | 3.4:+88975322 | MS.gene054601:CDS |
| TAATCATAAACAAGAAAGGG+TGG | 0.640706 | 3.4:-88977197 | None:intergenic |
| AGAAGGCACTGAAGCTGCTG+CGG | 0.641571 | 3.4:+88977107 | MS.gene054601:CDS |
| GCTACAAAGTCTAGTCGAGG+TGG | 0.662510 | 3.4:-88977171 | None:intergenic |
| GACCAATGAAGTGAATTCAT+GGG | 0.663853 | 3.4:+88976510 | MS.gene054601:CDS |
| CCGTCGACGAAAGAGAGGAG+AGG | 0.679367 | 3.4:-88975460 | None:intergenic |
| TATGCTAAAGGAGCTAGGTG+TGG | 0.687658 | 3.4:+88976978 | MS.gene054601:CDS |
| TCAGCTACAAAGTCTAGTCG+AGG | 0.690824 | 3.4:-88977174 | None:intergenic |
| GAAGTAGTTGAGATGATCGG+TGG | 0.701068 | 3.4:-88975386 | None:intergenic |
| GCGTTGTTGACCGACCCAAG+AGG | 0.750211 | 3.4:-88976571 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTGATTTTTTAAATTTGATA+TGG | + | chr3.4:88976469-88976488 | MS.gene054601:intron | 10.0% |
| !! | GATTTATTTGAATAACATAA+AGG | - | chr3.4:88976059-88976078 | None:intergenic | 15.0% |
| !! | TTAAATTTGATATGGTTTAA+AGG | + | chr3.4:88976477-88976496 | MS.gene054601:intron | 15.0% |
| !! | AAGATAGAAAAACATTCTAA+TGG | - | chr3.4:88975929-88975948 | None:intergenic | 20.0% |
| !! | ATAAGCTTATATGAATGAAA+AGG | - | chr3.4:88975872-88975891 | None:intergenic | 20.0% |
| !! | TAAATGTATATCAAGCAAAA+AGG | + | chr3.4:88976106-88976125 | MS.gene054601:intron | 20.0% |
| !! | TAGTACTACAAAAATTTAAG+TGG | - | chr3.4:88976203-88976222 | None:intergenic | 20.0% |
| !!! | AAATTTTTGTAGTACTAAAG+AGG | + | chr3.4:88976206-88976225 | MS.gene054601:intron | 20.0% |
| !!! | AATTTTTGTAGTACTAAAGA+GGG | + | chr3.4:88976207-88976226 | MS.gene054601:intron | 20.0% |
| !!! | ATGATAAGCTTTTAAGATTT+AGG | + | chr3.4:88975676-88975695 | MS.gene054601:intron | 20.0% |
| !!! | TGATAAGCTTTTAAGATTTA+GGG | + | chr3.4:88975677-88975696 | MS.gene054601:intron | 20.0% |
| ! | CCAAAGTTCAATATTTCATT+TGG | + | chr3.4:88976940-88976959 | MS.gene054601:CDS | 25.0% |
| ! | CCAAATGAAATATTGAACTT+TGG | - | chr3.4:88976943-88976962 | None:intergenic | 25.0% |
| ! | CTCTAATCATAAACAAGAAA+GGG | - | chr3.4:88977203-88977222 | None:intergenic | 25.0% |
| ! | GAAAGACTTGTGAAATATAT+TGG | - | chr3.4:88977073-88977092 | None:intergenic | 25.0% |
| ! | GAAATATATTGGAAACACAA+AGG | - | chr3.4:88977062-88977081 | None:intergenic | 25.0% |
| ! | TCTCTAATCATAAACAAGAA+AGG | - | chr3.4:88977204-88977223 | None:intergenic | 25.0% |
| ! | TTATTTATAGCTTACGTGTT+TGG | - | chr3.4:88975766-88975785 | None:intergenic | 25.0% |
| !! | AGAAGAATTGAACATTTTGT+TGG | - | chr3.4:88976405-88976424 | None:intergenic | 25.0% |
| !!! | TTTGATGGTTTTAAAGTTCT+TGG | + | chr3.4:88976751-88976770 | MS.gene054601:CDS | 25.0% |
| ATGAATGAAAAGGACTCATT+CGG | - | chr3.4:88975862-88975881 | None:intergenic | 30.0% | |
| ATGATTAGAGAAGATTTGAC+TGG | + | chr3.4:88977213-88977232 | MS.gene054601:CDS | 30.0% | |
| ATTAAAGAACTTCTTCCTCT+TGG | + | chr3.4:88976556-88976575 | MS.gene054601:CDS | 30.0% | |
| GAGGAAGAAGTTCTTTAATA+AGG | - | chr3.4:88976555-88976574 | None:intergenic | 30.0% | |
| GCATTACAAGCTAAATTAGT+TGG | - | chr3.4:88976370-88976389 | None:intergenic | 30.0% | |
| TAACATAAAGGTTTGTCACA+TGG | - | chr3.4:88976047-88976066 | None:intergenic | 30.0% | |
| TAATCATAAACAAGAAAGGG+TGG | - | chr3.4:88977200-88977219 | None:intergenic | 30.0% | |
| TATAAGCTTATAAGCTAAGC+TGG | + | chr3.4:88975881-88975900 | MS.gene054601:intron | 30.0% | |
| TGAAACTTCTGATATGCTAA+AGG | + | chr3.4:88976966-88976985 | MS.gene054601:CDS | 30.0% | |
| TGAAAGCTGTGGTATATATT+TGG | + | chr3.4:88975951-88975970 | MS.gene054601:intron | 30.0% | |
| TGCTTGATATACATTTACGA+AGG | - | chr3.4:88976103-88976122 | None:intergenic | 30.0% | |
| TTAAAGAACTTCTTCCTCTT+GGG | + | chr3.4:88976557-88976576 | MS.gene054601:CDS | 30.0% | |
| TTCATTGAAGTGAATGAAGA+AGG | + | chr3.4:88977090-88977109 | MS.gene054601:CDS | 30.0% | |
| TTCTATCTTAATGAAAGCTG+TGG | + | chr3.4:88975940-88975959 | MS.gene054601:intron | 30.0% | |
| TTCTTCCAAATGCAAAAGAT+GGG | + | chr3.4:88976824-88976843 | MS.gene054601:CDS | 30.0% | |
| TTTCTTCCAAATGCAAAAGA+TGG | + | chr3.4:88976823-88976842 | MS.gene054601:CDS | 30.0% | |
| ! | AATAAACTGCTTCTTTTTGC+TGG | - | chr3.4:88976725-88976744 | None:intergenic | 30.0% |
| ! | CAGTTTATTAGAGCTTTTGA+TGG | + | chr3.4:88976736-88976755 | MS.gene054601:CDS | 30.0% |
| ! | GGTAACTATCATTTTCTCAT+GGG | - | chr3.4:88975841-88975860 | None:intergenic | 30.0% |
| ! | TTAAGATTTAGGGTCTATCT+CGG | + | chr3.4:88975687-88975706 | MS.gene054601:intron | 30.0% |
| AACAATCATCTTTGTTGGAC+AGG | + | chr3.4:88977236-88977255 | MS.gene054601:CDS | 35.0% | |
| AAGCTGTGGTATATATTTGG+AGG | + | chr3.4:88975954-88975973 | MS.gene054601:intron | 35.0% | |
| AAGGAAAGACAAACAGGTAT+AGG | - | chr3.4:88976084-88976103 | None:intergenic | 35.0% | |
| ACTGGAACAATCATCTTTGT+TGG | + | chr3.4:88977231-88977250 | MS.gene054601:CDS | 35.0% | |
| CATAGAAACATACCTTGTTC+TGG | - | chr3.4:88975576-88975595 | None:intergenic | 35.0% | |
| CGATTATGCTTAACACAACT+TGG | - | chr3.4:88975309-88975328 | None:intergenic | 35.0% | |
| CTGCTGCATCTATATTGTTA+AGG | + | chr3.4:88977133-88977152 | MS.gene054601:CDS | 35.0% | |
| GACCAATGAAGTGAATTCAT+GGG | + | chr3.4:88976510-88976529 | MS.gene054601:CDS | 35.0% | |
| GATGTTGTTGTCTGATTCTT+TGG | - | chr3.4:88975266-88975285 | None:intergenic | 35.0% | |
| TGACCAATGAAGTGAATTCA+TGG | + | chr3.4:88976509-88976528 | MS.gene054601:CDS | 35.0% | |
| TGGATACTAGAAAACAGCAA+AGG | - | chr3.4:88976350-88976369 | None:intergenic | 35.0% | |
| TTATCTTCGCCTTGCTTATA+AGG | - | chr3.4:88976781-88976800 | None:intergenic | 35.0% | |
| TTGAAAAGTTCTTGTTGCGT+GGG | - | chr3.4:88975349-88975368 | None:intergenic | 35.0% | |
| TTTACGAAGGAAAGACAAAC+AGG | - | chr3.4:88976090-88976109 | None:intergenic | 35.0% | |
| ! | CGGTAACTATCATTTTCTCA+TGG | - | chr3.4:88975842-88975861 | None:intergenic | 35.0% |
| ! | TACGAGTTTCACCTTTTGAA+TGG | + | chr3.4:88976673-88976692 | MS.gene054601:CDS | 35.0% |
| ! | TTCTTTTTGCTGGTCATGAA+AGG | - | chr3.4:88976715-88976734 | None:intergenic | 35.0% |
| !! | CAAAGCTGCTTTAAAATCAG+TGG | - | chr3.4:88975539-88975558 | None:intergenic | 35.0% |
| !! | TACCTTGTTCTGGAAATCAA+CGG | - | chr3.4:88975566-88975585 | None:intergenic | 35.0% |
| !! | TCCTTTGAAGTATAGTGCAT+TGG | - | chr3.4:88976614-88976633 | None:intergenic | 35.0% |
| AAGTGGAAGTAGGTGACTTT+AGG | + | chr3.4:88976914-88976933 | MS.gene054601:CDS | 40.0% | |
| AGCCCATGAATTCACTTCAT+TGG | - | chr3.4:88976515-88976534 | None:intergenic | 40.0% | |
| AGCGAAGTAGTTGAGATGAT+CGG | - | chr3.4:88975392-88975411 | None:intergenic | 40.0% | |
| CAAGCTTCCTCTTGAAAAAG+TGG | + | chr3.4:88976897-88976916 | MS.gene054601:CDS | 40.0% | |
| CCTCTTGAAAAAGTGGAAGT+AGG | + | chr3.4:88976904-88976923 | MS.gene054601:CDS | 40.0% | |
| GAAGGAAGGTTGAAGAGAAA+GGG | - | chr3.4:88975503-88975522 | None:intergenic | 40.0% | |
| GCCAATGCACTATACTTCAA+AGG | + | chr3.4:88976610-88976629 | MS.gene054601:CDS | 40.0% | |
| GTGTTAAGCATAATCGCTTC+TGG | + | chr3.4:88975313-88975332 | MS.gene054601:CDS | 40.0% | |
| GTTGAAAAGTTCTTGTTGCG+TGG | - | chr3.4:88975350-88975369 | None:intergenic | 40.0% | |
| TCATGAAAGGAACCTTGACT+GGG | - | chr3.4:88976702-88976721 | None:intergenic | 40.0% | |
| TCCAAATGCAAAAGATGGGT+TGG | + | chr3.4:88976828-88976847 | MS.gene054601:CDS | 40.0% | |
| TCTGATATGCTAAAGGAGCT+AGG | + | chr3.4:88976973-88976992 | MS.gene054601:CDS | 40.0% | |
| ! | CTTGGTCTTCCTTATAAGCA+AGG | + | chr3.4:88976769-88976788 | MS.gene054601:CDS | 40.0% |
| !! | ATAATCGCTTCTGGTTCTGA+GGG | + | chr3.4:88975322-88975341 | MS.gene054601:CDS | 40.0% |
| !! | TTCCGTTGATTTCCAGAACA+AGG | + | chr3.4:88975561-88975580 | MS.gene054601:CDS | 40.0% |
| !!! | CCTACTTCCACTTTTTCAAG+AGG | - | chr3.4:88976907-88976926 | None:intergenic | 40.0% |
| AACACAACTTGGAGTGAGAG+TGG | - | chr3.4:88975298-88975317 | None:intergenic | 45.0% | |
| AATCAGTGGCGACGATTTGT+TGG | - | chr3.4:88975525-88975544 | None:intergenic | 45.0% | |
| AGAACTTCTTCCTCTTGGGT+CGG | + | chr3.4:88976561-88976580 | MS.gene054601:CDS | 45.0% | |
| AGGTGCTCAATCCTCTTGTT+GGG | + | chr3.4:88977256-88977275 | MS.gene054601:CDS | 45.0% | |
| CACTATACTTCAAAGGAGCG+TGG | + | chr3.4:88976617-88976636 | MS.gene054601:CDS | 45.0% | |
| GAAGTAGTTGAGATGATCGG+TGG | - | chr3.4:88975389-88975408 | None:intergenic | 45.0% | |
| GGAAGGAAGGTTGAAGAGAA+AGG | - | chr3.4:88975504-88975523 | None:intergenic | 45.0% | |
| GTCATGAAAGGAACCTTGAC+TGG | - | chr3.4:88976703-88976722 | None:intergenic | 45.0% | |
| TAGTCGAGGTGGAATACTCA+TGG | - | chr3.4:88977163-88977182 | None:intergenic | 45.0% | |
| TATGCTAAAGGAGCTAGGTG+TGG | + | chr3.4:88976978-88976997 | MS.gene054601:CDS | 45.0% | |
| TCAGCTACAAAGTCTAGTCG+AGG | - | chr3.4:88977177-88977196 | None:intergenic | 45.0% | |
| TCTGCAATTCCCTGCTACAA+TGG | + | chr3.4:88976154-88976173 | MS.gene054601:intron | 45.0% | |
| TGACTGGGCTACCATTCAAA+AGG | - | chr3.4:88976687-88976706 | None:intergenic | 45.0% | |
| TGGGCTGACAAAGAGACAAA+TGG | + | chr3.4:88976529-88976548 | MS.gene054601:CDS | 45.0% | |
| TGGTGGAGGTCTCACAAAAA+TGG | + | chr3.4:88977014-88977033 | MS.gene054601:CDS | 45.0% | |
| TGTGAAGAGCCATTGTAGCA+GGG | - | chr3.4:88976166-88976185 | None:intergenic | 45.0% | |
| TTTGAATGGTAGCCCAGTCA+AGG | + | chr3.4:88976687-88976706 | MS.gene054601:CDS | 45.0% | |
| ! | GATGATCGGTGGATTTGGAT+TGG | - | chr3.4:88975378-88975397 | None:intergenic | 45.0% |
| ! | GCCAACCCATCTTTTGCATT+TGG | - | chr3.4:88976832-88976851 | None:intergenic | 45.0% |
| ! | GTTGAGATGATCGGTGGATT+TGG | - | chr3.4:88975383-88975402 | None:intergenic | 45.0% |
| ! | GTTTTACCTTTCTCTGGTGG+AGG | + | chr3.4:88977000-88977019 | MS.gene054601:CDS | 45.0% |
| !! | AAAAGATGGGTTGGCAGCAT+TGG | + | chr3.4:88976837-88976856 | MS.gene054601:CDS | 45.0% |
| !! | CATAATCGCTTCTGGTTCTG+AGG | + | chr3.4:88975321-88975340 | MS.gene054601:CDS | 45.0% |
| !! | GAGTGATACGTTGGTTTGGT+TGG | - | chr3.4:88975221-88975240 | None:intergenic | 45.0% |
| !! | GGTGTGGTTTTACCTTTCTC+TGG | + | chr3.4:88976994-88977013 | MS.gene054601:CDS | 45.0% |
| !! | GTGGTTTTACCTTTCTCTGG+TGG | + | chr3.4:88976997-88977016 | MS.gene054601:CDS | 45.0% |
| !! | GTTGGCAGCATTGGTTGAAA+AGG | + | chr3.4:88976846-88976865 | MS.gene054601:CDS | 45.0% |
| CAGGTGCTCAATCCTCTTGT+TGG | + | chr3.4:88977255-88977274 | MS.gene054601:CDS | 50.0% | |
| CTGTGAAGAGCCATTGTAGC+AGG | - | chr3.4:88976167-88976186 | None:intergenic | 50.0% | |
| GCTACAAAGTCTAGTCGAGG+TGG | - | chr3.4:88977174-88977193 | None:intergenic | 50.0% | |
| ! | CGCTGAGTGATACGTTGGTT+TGG | - | chr3.4:88975225-88975244 | None:intergenic | 50.0% |
| ! | GATCGGTGGATTTGGATTGG+AGG | - | chr3.4:88975375-88975394 | None:intergenic | 50.0% |
| ! | GTGCATTGGCAAAGATGAGC+CGG | - | chr3.4:88976600-88976619 | None:intergenic | 50.0% |
| ! | TGCATTGGCAAAGATGAGCC+GGG | - | chr3.4:88976599-88976618 | None:intergenic | 50.0% |
| !! | AGTGGCGACGATTTGTTGGA+AGG | - | chr3.4:88975521-88975540 | None:intergenic | 50.0% |
| !! | GCGACGATTTGTTGGAAGGA+AGG | - | chr3.4:88975517-88975536 | None:intergenic | 50.0% |
| !! | GGCAGCATTGGTTGAAAAGG+TGG | + | chr3.4:88976849-88976868 | MS.gene054601:CDS | 50.0% |
| CCTCTCCTCTCTTTCGTCGA+CGG | + | chr3.4:88975460-88975479 | MS.gene054601:CDS | 55.0% | |
| GTGAGACCTCCACCAGAGAA+AGG | - | chr3.4:88977009-88977028 | None:intergenic | 55.0% | |
| TGCGACGCTGAGTGATACGT+TGG | - | chr3.4:88975230-88975249 | None:intergenic | 55.0% | |
| !! | AGAAGGCACTGAAGCTGCTG+CGG | + | chr3.4:88977107-88977126 | MS.gene054601:CDS | 55.0% |
| ACACGCCGTCGACGAAAGAG+AGG | - | chr3.4:88975468-88975487 | None:intergenic | 60.0% | |
| CCGTCGACGAAAGAGAGGAG+AGG | - | chr3.4:88975463-88975482 | None:intergenic | 60.0% | |
| CTCTTTCGTCGACGGCGTGT+GGG | + | chr3.4:88975468-88975487 | MS.gene054601:CDS | 60.0% | |
| GAAAGAGAGGAGAGGACCGC+CGG | - | chr3.4:88975455-88975474 | None:intergenic | 60.0% | |
| GCGTTGTTGACCGACCCAAG+AGG | - | chr3.4:88976574-88976593 | None:intergenic | 60.0% | |
| GGTCGGTCAACAACGCAACC+CGG | + | chr3.4:88976578-88976597 | MS.gene054601:CDS | 60.0% | |
| TCTCTTTCGTCGACGGCGTG+TGG | + | chr3.4:88975467-88975486 | MS.gene054601:CDS | 60.0% | |
| ! | AGCAGCGTCGGAGAGGATGA+CGG | - | chr3.4:88975428-88975447 | None:intergenic | 60.0% |
| AGAGAGGAGAGGACCGCCGG+CGG | - | chr3.4:88975452-88975471 | None:intergenic | 70.0% | |
| CTCTCCGACGCTGCTCCCGC+CGG | + | chr3.4:88975433-88975452 | MS.gene054601:CDS | 75.0% | |
| GAGAGGAGAGGACCGCCGGC+GGG | - | chr3.4:88975451-88975470 | None:intergenic | 75.0% | |
| ! | ACCGCCGGCGGGAGCAGCGT+CGG | - | chr3.4:88975440-88975459 | None:intergenic | 80.0% |
| ! | TCCGACGCTGCTCCCGCCGG+CGG | + | chr3.4:88975436-88975455 | MS.gene054601:CDS | 80.0% |
| !! | CGGCGGGAGCAGCGTCGGAG+AGG | - | chr3.4:88975435-88975454 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 88975196 | 88977281 | 88975196 | ID=MS.gene054601 |
| chr3.4 | mRNA | 88975196 | 88977281 | 88975196 | ID=MS.gene054601.t1;Parent=MS.gene054601 |
| chr3.4 | exon | 88975196 | 88975582 | 88975196 | ID=MS.gene054601.t1.exon1;Parent=MS.gene054601.t1 |
| chr3.4 | CDS | 88975196 | 88975582 | 88975196 | ID=cds.MS.gene054601.t1;Parent=MS.gene054601.t1 |
| chr3.4 | exon | 88976499 | 88977281 | 88976499 | ID=MS.gene054601.t1.exon2;Parent=MS.gene054601.t1 |
| chr3.4 | CDS | 88976499 | 88977281 | 88976499 | ID=cds.MS.gene054601.t1;Parent=MS.gene054601.t1 |
| Gene Sequence |
| Protein sequence |
