Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78737.t1 | XP_013442387.1 | 82.4 | 204 | 26 | 2 | 1 | 204 | 1 | 194 | 4.90E-83 | 317.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78737.t1 | P87242 | 53.8 | 145 | 63 | 2 | 62 | 203 | 8 | 151 | 6.6e-36 | 152.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78737.t1 | A0A072TGE2 | 82.4 | 204 | 26 | 2 | 1 | 204 | 1 | 194 | 3.6e-83 | 317.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene87886 | MS.gene78737 | PPI |
| MS.gene99675 | MS.gene78737 | PPI |
| MS.gene046441 | MS.gene78737 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78737.t1 | MTR_0194s0040 | 88.406 | 207 | 8 | 4 | 1 | 204 | 1 | 194 | 1.10e-124 | 352 |
| MS.gene78737.t1 | MTR_4g129860 | 63.399 | 153 | 54 | 1 | 56 | 206 | 34 | 186 | 9.29e-67 | 204 |
| MS.gene78737.t1 | MTR_4g129850 | 64.000 | 150 | 52 | 1 | 56 | 203 | 33 | 182 | 3.13e-66 | 203 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78737.t1 | AT1G26160 | 66.832 | 202 | 51 | 4 | 15 | 203 | 17 | 215 | 1.65e-89 | 263 |
| MS.gene78737.t1 | AT1G26160 | 65.104 | 192 | 51 | 4 | 15 | 193 | 17 | 205 | 1.07e-81 | 242 |
| MS.gene78737.t1 | AT2G23820 | 71.053 | 152 | 44 | 0 | 52 | 203 | 68 | 219 | 1.43e-69 | 213 |
| MS.gene78737.t1 | AT2G23820 | 71.053 | 152 | 44 | 0 | 52 | 203 | 68 | 219 | 1.48e-69 | 213 |
Find 58 sgRNAs with CRISPR-Local
Find 139 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTGAGAAGGTTCATGTTTC+TGG | 0.077758 | 5.4:+42215124 | None:intergenic |
| CATACTCCAACCACAGTTCT+TGG | 0.247596 | 5.4:+42214093 | None:intergenic |
| TGAAAACAATTCTTCTTTAG+AGG | 0.265718 | 5.4:-42214072 | MS.gene78737:CDS |
| CTCATTGCTTCTGATATTCC+TGG | 0.268380 | 5.4:-42214876 | MS.gene78737:CDS |
| AACAAAATGTGCCAAGTTCT+TGG | 0.268598 | 5.4:-42214235 | MS.gene78737:CDS |
| AAGGTTCATGTTTCTGGGTC+TGG | 0.325139 | 5.4:+42215130 | None:intergenic |
| ACAAGCACTGGAATATGAAA+TGG | 0.360466 | 5.4:-42213250 | MS.gene78737:CDS |
| CAACTACGCTCCTCTCGTTT+CGG | 0.369772 | 5.4:-42215160 | MS.gene78737:CDS |
| TGGGTTAATCATGGGATTAA+AGG | 0.371640 | 5.4:-42214945 | MS.gene78737:CDS |
| GTGAGAAGGTTCATGTTTCT+GGG | 0.384306 | 5.4:+42215125 | None:intergenic |
| ATTGTATCAATAGCTATTGT+AGG | 0.387039 | 5.4:-42214322 | MS.gene78737:intron |
| AGGTTCATGTTTCTGGGTCT+GGG | 0.438240 | 5.4:+42215131 | None:intergenic |
| GGGTTAATCATGGGATTAAA+GGG | 0.440585 | 5.4:-42214944 | MS.gene78737:CDS |
| AGAAAAGGATGGGTTAATCA+TGG | 0.448993 | 5.4:-42214954 | MS.gene78737:CDS |
| TTAAAGCTTCCTGCTCCATT+CGG | 0.449281 | 5.4:+42214257 | None:intergenic |
| AGCAGAAGAGGAGGAGGAGG+AGG | 0.452726 | 5.4:+42215098 | None:intergenic |
| TCATCCCTCCACCAAGAACT+TGG | 0.474015 | 5.4:+42214224 | None:intergenic |
| TCAAAGCCATACGGTACATA+TGG | 0.474924 | 5.4:+42214904 | None:intergenic |
| TGAAATGATTCTACAAGCAC+TGG | 0.492894 | 5.4:-42213262 | MS.gene78737:CDS |
| TGAAAAGAGCCGAATGGAGC+AGG | 0.493928 | 5.4:-42214266 | MS.gene78737:CDS |
| GAGGAGGAGGAGGTGTGAGA+AGG | 0.495903 | 5.4:+42215111 | None:intergenic |
| CAAGCACTGGAATATGAAAT+GGG | 0.501459 | 5.4:-42213249 | MS.gene78737:CDS |
| ATCGATAGCAGAAGAGGAGG+AGG | 0.510416 | 5.4:+42215092 | None:intergenic |
| GTGTAGACCACAAAGAGAAA+AGG | 0.512806 | 5.4:-42214969 | MS.gene78737:intron |
| ACATACCTTCTGCAATATCA+TGG | 0.513774 | 5.4:+42214736 | None:intergenic |
| ATGTGCCAAGTTCTTGGTGG+AGG | 0.521274 | 5.4:-42214229 | MS.gene78737:CDS |
| TTAATAATTACGCAAGCAGT+CGG | 0.524958 | 5.4:-42215257 | MS.gene78737:CDS |
| GAGAAAATCGATAGCAGAAG+AGG | 0.527137 | 5.4:+42215086 | None:intergenic |
| TTCCTGGATTGAGTAGAGAA+AGG | 0.531245 | 5.4:-42214860 | MS.gene78737:intron |
| GATAGCAGAAGAGGAGGAGG+AGG | 0.532295 | 5.4:+42215095 | None:intergenic |
| ACCATCTGATGGTGTGCCTA+AGG | 0.532689 | 5.4:-42214290 | MS.gene78737:CDS |
| GAGAGCATACCTTGAGAGTG+TGG | 0.537102 | 5.4:+42215055 | None:intergenic |
| GAAAAGGATGGGTTAATCAT+GGG | 0.538437 | 5.4:-42214953 | MS.gene78737:CDS |
| ACGGTACATATGGTCAGCTA+TGG | 0.543472 | 5.4:+42214914 | None:intergenic |
| AACCTTTCTCTACTCAATCC+AGG | 0.548626 | 5.4:+42214858 | None:intergenic |
| CGAGATCCAAGAACTGTGGT+TGG | 0.572991 | 5.4:-42214099 | MS.gene78737:CDS |
| AAAATGTGCCAAGTTCTTGG+TGG | 0.580446 | 5.4:-42214232 | MS.gene78737:CDS |
| AGCTGACCATATGTACCGTA+TGG | 0.583476 | 5.4:-42214910 | MS.gene78737:CDS |
| TAGTTGCGGAGAACAACAAA+GGG | 0.585261 | 5.4:+42215177 | None:intergenic |
| GACCACAAAGAGAAAAGGAT+GGG | 0.587555 | 5.4:-42214964 | MS.gene78737:CDS |
| CACTCTCTGCCACACTCTCA+AGG | 0.588274 | 5.4:-42215064 | MS.gene78737:intron |
| AAAATCGATAGCAGAAGAGG+AGG | 0.590653 | 5.4:+42215089 | None:intergenic |
| AAACGAGAGGAGCGTAGTTG+CGG | 0.590764 | 5.4:+42215163 | None:intergenic |
| CTCGTCCATGATATTGCAGA+AGG | 0.591615 | 5.4:-42214741 | MS.gene78737:intron |
| GTTCTTGGTGGAGGGATGAG+AGG | 0.593011 | 5.4:-42214220 | MS.gene78737:intron |
| CACCACTGCATCATCATCAA+CGG | 0.612278 | 5.4:-42215224 | MS.gene78737:CDS |
| GTAGTTGCGGAGAACAACAA+AGG | 0.625952 | 5.4:+42215176 | None:intergenic |
| GCCTTAGGCACACCATCAGA+TGG | 0.628508 | 5.4:+42214289 | None:intergenic |
| CGCCGTTGATGATGATGCAG+TGG | 0.639668 | 5.4:+42215222 | None:intergenic |
| TAAGGCTGAAAAGAGCCGAA+TGG | 0.640673 | 5.4:-42214272 | MS.gene78737:CDS |
| GGAGATATAACACCATCTGA+TGG | 0.641949 | 5.4:-42214301 | MS.gene78737:CDS |
| AGACCACAAAGAGAAAAGGA+TGG | 0.651747 | 5.4:-42214965 | MS.gene78737:CDS |
| TGAGTGACATCAAAGCCATA+CGG | 0.663318 | 5.4:+42214895 | None:intergenic |
| GGTTAATCATGGGATTAAAG+GGG | 0.672063 | 5.4:-42214943 | MS.gene78737:CDS |
| TGTGCCAAGTTCTTGGTGGA+GGG | 0.685831 | 5.4:-42214228 | MS.gene78737:CDS |
| TGGGAACGAACCGAAACGAG+AGG | 0.686476 | 5.4:+42215150 | None:intergenic |
| CACTGCATCATCATCAACGG+CGG | 0.717600 | 5.4:-42215221 | MS.gene78737:CDS |
| CTGACGAGATCCAAGAACTG+TGG | 0.718541 | 5.4:-42214103 | MS.gene78737:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATAAAGATAAACTGAATT+TGG | - | chr5.4:42214129-42214148 | MS.gene78737:intron | 15.0% |
| !! | AATAAAGATAAACTGAATTT+GGG | - | chr5.4:42214130-42214149 | MS.gene78737:intron | 15.0% |
| !!! | CAAATCAGAATATATTTTTA+TGG | - | chr5.4:42215061-42215080 | MS.gene78737:intron | 15.0% |
| !! | TAGATCTGTAATATGAAAAT+TGG | - | chr5.4:42215176-42215195 | MS.gene78737:CDS | 20.0% |
| !!! | AATTTGGAACATTAAAAACT+TGG | - | chr5.4:42214665-42214684 | MS.gene78737:intron | 20.0% |
| !!! | ATTACATTACATTTTCTCTT+CGG | - | chr5.4:42213916-42213935 | MS.gene78737:intron | 20.0% |
| !!! | CTGAAATTTTTGCTTATAAT+AGG | + | chr5.4:42213964-42213983 | None:intergenic | 20.0% |
| !!! | TGATTTTGAAGATAATATGA+AGG | - | chr5.4:42214690-42214709 | MS.gene78737:intron | 20.0% |
| !!! | TTTTTGCTTATAAAAGTGAT+TGG | - | chr5.4:42214066-42214085 | MS.gene78737:CDS | 20.0% |
| ! | ACATTCAATTCAATCAGATA+AGG | + | chr5.4:42213504-42213523 | None:intergenic | 25.0% |
| ! | ATTGTATCAATAGCTATTGT+AGG | - | chr5.4:42214181-42214200 | MS.gene78737:intron | 25.0% |
| ! | CATGAAATAACCAATGTATA+TGG | + | chr5.4:42214026-42214045 | None:intergenic | 25.0% |
| ! | CATTCAATTCAATCAGATAA+GGG | + | chr5.4:42213503-42213522 | None:intergenic | 25.0% |
| ! | TAATGTAATGTAATGCAATC+AGG | + | chr5.4:42213905-42213924 | None:intergenic | 25.0% |
| ! | TGAAAACAATTCTTCTTTAG+AGG | - | chr5.4:42214431-42214450 | MS.gene78737:intron | 25.0% |
| !! | TGACTAAATGATTGATTCTA+GGG | + | chr5.4:42214836-42214855 | None:intergenic | 25.0% |
| !!! | ATTTTTCTTTTAAGTTCCGT+CGG | - | chr5.4:42214319-42214338 | MS.gene78737:intron | 25.0% |
| !!! | TGTTGTTAAAGATTTTGACA+AGG | - | chr5.4:42214458-42214477 | MS.gene78737:intron | 25.0% |
| !!! | TTTGAGATGACATTCTTTTT+TGG | - | chr5.4:42214368-42214387 | MS.gene78737:intron | 25.0% |
| AACAGAGAAAGGATTAATGA+AGG | + | chr5.4:42214539-42214558 | None:intergenic | 30.0% | |
| AATTTACTTTGAGTCCAAGA+TGG | + | chr5.4:42214564-42214583 | None:intergenic | 30.0% | |
| ACATAAAAGAAAGCAAGCAT+GGG | + | chr5.4:42214866-42214885 | None:intergenic | 30.0% | |
| AGATAAACTGAATTTGGGTA+AGG | - | chr5.4:42214135-42214154 | MS.gene78737:intron | 30.0% | |
| ATGATAACTAATGCTACAAG+AGG | + | chr5.4:42214599-42214618 | None:intergenic | 30.0% | |
| CAATAGGGATTCATGTTTAA+TGG | - | chr5.4:42214891-42214910 | MS.gene78737:CDS | 30.0% | |
| CATTAAACATGAATCCCTAT+TGG | + | chr5.4:42214893-42214912 | None:intergenic | 30.0% | |
| GAAAAAAATGATGATACGCA+TGG | + | chr5.4:42215023-42215042 | None:intergenic | 30.0% | |
| GAGGGAAAAAAACATAGTAA+AGG | + | chr5.4:42215142-42215161 | None:intergenic | 30.0% | |
| GTAGTATAGACCATATACAT+TGG | - | chr5.4:42214013-42214032 | MS.gene78737:intron | 30.0% | |
| TGATAACTAATGCTACAAGA+GGG | + | chr5.4:42214598-42214617 | None:intergenic | 30.0% | |
| TTAATAATTACGCAAGCAGT+CGG | - | chr5.4:42213246-42213265 | MS.gene78737:CDS | 30.0% | |
| ! | AACGATTATCAAAGCACTAT+AGG | + | chr5.4:42213875-42213894 | None:intergenic | 30.0% |
| ! | ATCTAAAGATGCATTTTACG+AGG | + | chr5.4:42215161-42215180 | None:intergenic | 30.0% |
| ! | ATTATCAAAGCACTATAGGT+AGG | + | chr5.4:42213871-42213890 | None:intergenic | 30.0% |
| ! | CTACGATAATAGATTTTCGT+TGG | + | chr5.4:42214635-42214654 | None:intergenic | 30.0% |
| ! | GTGACTAAATGATTGATTCT+AGG | + | chr5.4:42214837-42214856 | None:intergenic | 30.0% |
| ! | TACATTTTCTCTTCGGTAAA+AGG | - | chr5.4:42213923-42213942 | MS.gene78737:intron | 30.0% |
| ! | TCGTAGATGTATCTGAAATT+TGG | - | chr5.4:42214649-42214668 | MS.gene78737:intron | 30.0% |
| ! | TCTAAAGATGCATTTTACGA+GGG | + | chr5.4:42215160-42215179 | None:intergenic | 30.0% |
| ! | TCTTTTATGTGTAGCCAATA+GGG | - | chr5.4:42214876-42214895 | MS.gene78737:CDS | 30.0% |
| ! | TTCTTTTATGTGTAGCCAAT+AGG | - | chr5.4:42214875-42214894 | MS.gene78737:CDS | 30.0% |
| !!! | CTAATTGCATTGTTTTGATC+AGG | - | chr5.4:42215217-42215236 | MS.gene78737:CDS | 30.0% |
| AAAATGATGATACGCATGGA+AGG | + | chr5.4:42215019-42215038 | None:intergenic | 35.0% | |
| AAATGATGATACGCATGGAA+GGG | + | chr5.4:42215018-42215037 | None:intergenic | 35.0% | |
| AACAAAATGTGCCAAGTTCT+TGG | - | chr5.4:42214268-42214287 | MS.gene78737:CDS | 35.0% | |
| ACATACCTTCTGCAATATCA+TGG | + | chr5.4:42213770-42213789 | None:intergenic | 35.0% | |
| CAAGGCAGTAATTAGGAAAA+TGG | - | chr5.4:42214755-42214774 | MS.gene78737:CDS | 35.0% | |
| CACATAAAAGAAAGCAAGCA+TGG | + | chr5.4:42214867-42214886 | None:intergenic | 35.0% | |
| GCTTATAAAAGTGATTGGAG+AGG | - | chr5.4:42214071-42214090 | MS.gene78737:CDS | 35.0% | |
| GGGTTAATCATGGGATTAAA+GGG | - | chr5.4:42213559-42213578 | MS.gene78737:intron | 35.0% | |
| GGTTAATCATGGGATTAAAG+GGG | - | chr5.4:42213560-42213579 | MS.gene78737:intron | 35.0% | |
| TATGAAAATTGGAGACCTTC+TGG | - | chr5.4:42215187-42215206 | MS.gene78737:CDS | 35.0% | |
| TCAATCAGATAAGGGATGAA+TGG | + | chr5.4:42213495-42213514 | None:intergenic | 35.0% | |
| TGAAATGATTCTACAAGCAC+TGG | - | chr5.4:42215241-42215260 | MS.gene78737:CDS | 35.0% | |
| TGGGTTAATCATGGGATTAA+AGG | - | chr5.4:42213558-42213577 | MS.gene78737:intron | 35.0% | |
| ! | CATTGACAAGCTTTTATTGC+TGG | + | chr5.4:42214959-42214978 | None:intergenic | 35.0% |
| ! | GATTGATTCTAGGGAAGTTT+AGG | + | chr5.4:42214827-42214846 | None:intergenic | 35.0% |
| ! | TTTTCCTAATTACTGCCTTG+AGG | + | chr5.4:42214755-42214774 | None:intergenic | 35.0% |
| !! | ACAAGCACTGGAATATGAAA+TGG | - | chr5.4:42215253-42215272 | MS.gene78737:CDS | 35.0% |
| !! | AGAAAAGGATGGGTTAATCA+TGG | - | chr5.4:42213549-42213568 | MS.gene78737:intron | 35.0% |
| !! | CAAGCACTGGAATATGAAAT+GGG | - | chr5.4:42215254-42215273 | MS.gene78737:CDS | 35.0% |
| !! | GAAAAGGATGGGTTAATCAT+GGG | - | chr5.4:42213550-42213569 | MS.gene78737:intron | 35.0% |
| AAAATCGATAGCAGAAGAGG+AGG | + | chr5.4:42213417-42213436 | None:intergenic | 40.0% | |
| AAAATGTGCCAAGTTCTTGG+TGG | - | chr5.4:42214271-42214290 | MS.gene78737:CDS | 40.0% | |
| AACCTTTCTCTACTCAATCC+AGG | + | chr5.4:42213648-42213667 | None:intergenic | 40.0% | |
| AGACCACAAAGAGAAAAGGA+TGG | - | chr5.4:42213538-42213557 | MS.gene78737:intron | 40.0% | |
| ATCCATCTGCATTACGTACT+AGG | + | chr5.4:42214497-42214516 | None:intergenic | 40.0% | |
| CACAACACAGAAGAAAGCAA+AGG | + | chr5.4:42213723-42213742 | None:intergenic | 40.0% | |
| CCAAACAGTCTTCATGTTGA+GGG | - | chr5.4:42214986-42215005 | MS.gene78737:intron | 40.0% | |
| CCAAGATGGTAAACAGAGAA+AGG | + | chr5.4:42214550-42214569 | None:intergenic | 40.0% | |
| CCTCAACATGAAGACTGTTT+GGG | + | chr5.4:42214988-42215007 | None:intergenic | 40.0% | |
| CCTTTCTCTGTTTACCATCT+TGG | - | chr5.4:42214547-42214566 | MS.gene78737:intron | 40.0% | |
| CTCATTGCTTCTGATATTCC+TGG | - | chr5.4:42213627-42213646 | MS.gene78737:intron | 40.0% | |
| GACCACAAAGAGAAAAGGAT+GGG | - | chr5.4:42213539-42213558 | MS.gene78737:intron | 40.0% | |
| GAGAAAATCGATAGCAGAAG+AGG | + | chr5.4:42213420-42213439 | None:intergenic | 40.0% | |
| GCAATTAGAAAGCAACCAGA+AGG | + | chr5.4:42215205-42215224 | None:intergenic | 40.0% | |
| GCTTATAATAGGTGACCAGA+GGG | + | chr5.4:42213953-42213972 | None:intergenic | 40.0% | |
| GGAGATATAACACCATCTGA+TGG | - | chr5.4:42214202-42214221 | MS.gene78737:intron | 40.0% | |
| GTGAGAAGGTTCATGTTTCT+GGG | + | chr5.4:42213381-42213400 | None:intergenic | 40.0% | |
| GTGTAGACCACAAAGAGAAA+AGG | - | chr5.4:42213534-42213553 | MS.gene78737:intron | 40.0% | |
| TACCTAGTACGTAATGCAGA+TGG | - | chr5.4:42214492-42214511 | MS.gene78737:intron | 40.0% | |
| TAGTTGCGGAGAACAACAAA+GGG | + | chr5.4:42213329-42213348 | None:intergenic | 40.0% | |
| TCAAAGCCATACGGTACATA+TGG | + | chr5.4:42213602-42213621 | None:intergenic | 40.0% | |
| TCAGTACTATCACCTCTGAA+AGG | - | chr5.4:42214721-42214740 | MS.gene78737:intron | 40.0% | |
| TGAGTGACATCAAAGCCATA+CGG | + | chr5.4:42213611-42213630 | None:intergenic | 40.0% | |
| TGCTTATAATAGGTGACCAG+AGG | + | chr5.4:42213954-42213973 | None:intergenic | 40.0% | |
| TGTGAGAAGGTTCATGTTTC+TGG | + | chr5.4:42213382-42213401 | None:intergenic | 40.0% | |
| TTAAAGCTTCCTGCTCCATT+CGG | + | chr5.4:42214249-42214268 | None:intergenic | 40.0% | |
| TTCCTGGATTGAGTAGAGAA+AGG | - | chr5.4:42213643-42213662 | MS.gene78737:intron | 40.0% | |
| ! | AACCCATCCTTTTCTCTTTG+TGG | + | chr5.4:42213544-42213563 | None:intergenic | 40.0% |
| ACGGTACATATGGTCAGCTA+TGG | + | chr5.4:42213592-42213611 | None:intergenic | 45.0% | |
| AGCTGACCATATGTACCGTA+TGG | - | chr5.4:42213593-42213612 | MS.gene78737:intron | 45.0% | |
| CACCACTGCATCATCATCAA+CGG | - | chr5.4:42213279-42213298 | MS.gene78737:intron | 45.0% | |
| CATACTCCAACCACAGTTCT+TGG | + | chr5.4:42214413-42214432 | None:intergenic | 45.0% | |
| CCCAAACAGTCTTCATGTTG+AGG | - | chr5.4:42214985-42215004 | MS.gene78737:intron | 45.0% | |
| CCCTCAACATGAAGACTGTT+TGG | + | chr5.4:42214989-42215008 | None:intergenic | 45.0% | |
| CTAATTACTGCCTTGAGGAC+AGG | + | chr5.4:42214750-42214769 | None:intergenic | 45.0% | |
| CTCGTCCATGATATTGCAGA+AGG | - | chr5.4:42213762-42213781 | MS.gene78737:intron | 45.0% | |
| CTCTTCCAAAGTGACGTTGT+TGG | - | chr5.4:42214793-42214812 | MS.gene78737:intron | 45.0% | |
| CTGTCCTCAAGGCAGTAATT+AGG | - | chr5.4:42214748-42214767 | MS.gene78737:CDS | 45.0% | |
| GCCAAATTTCAAAGCTCCGA+CGG | + | chr5.4:42214338-42214357 | None:intergenic | 45.0% | |
| GTAGTTGCGGAGAACAACAA+AGG | + | chr5.4:42213330-42213349 | None:intergenic | 45.0% | |
| TAAGGCTGAAAAGAGCCGAA+TGG | - | chr5.4:42214231-42214250 | MS.gene78737:CDS | 45.0% | |
| TGAGTAAGTGAGTGAGTGAG+AGG | + | chr5.4:42213798-42213817 | None:intergenic | 45.0% | |
| TGGAAGAGGAAAGTAGCACT+GGG | + | chr5.4:42214781-42214800 | None:intergenic | 45.0% | |
| TTGGAAGAGGAAAGTAGCAC+TGG | + | chr5.4:42214782-42214801 | None:intergenic | 45.0% | |
| ! | ATTCGGCTCTTTTCAGCCTT+AGG | + | chr5.4:42214232-42214251 | None:intergenic | 45.0% |
| ! | CAACAACGTCACTTTGGAAG+AGG | + | chr5.4:42214795-42214814 | None:intergenic | 45.0% |
| !! | AAGGTTCATGTTTCTGGGTC+TGG | + | chr5.4:42213376-42213395 | None:intergenic | 45.0% |
| !! | AGGTTCATGTTTCTGGGTCT+GGG | + | chr5.4:42213375-42213394 | None:intergenic | 45.0% |
| !! | TCCGTCGGAGCTTTGAAATT+TGG | - | chr5.4:42214334-42214353 | MS.gene78737:intron | 45.0% |
| ATCGATAGCAGAAGAGGAGG+AGG | + | chr5.4:42213414-42213433 | None:intergenic | 50.0% | |
| ATGTGCCAAGTTCTTGGTGG+AGG | - | chr5.4:42214274-42214293 | MS.gene78737:CDS | 50.0% | |
| CAACTACGCTCCTCTCGTTT+CGG | - | chr5.4:42213343-42213362 | MS.gene78737:intron | 50.0% | |
| CACTGCATCATCATCAACGG+CGG | - | chr5.4:42213282-42213301 | MS.gene78737:intron | 50.0% | |
| CGAGATCCAAGAACTGTGGT+TGG | - | chr5.4:42214404-42214423 | MS.gene78737:intron | 50.0% | |
| CGATGTTTCGCGGTTGAAGA+AGG | + | chr5.4:42214927-42214946 | None:intergenic | 50.0% | |
| CTGACGAGATCCAAGAACTG+TGG | - | chr5.4:42214400-42214419 | MS.gene78737:intron | 50.0% | |
| GACAGAGCTACGATGTTTCG+CGG | + | chr5.4:42214937-42214956 | None:intergenic | 50.0% | |
| TCATCCCTCCACCAAGAACT+TGG | + | chr5.4:42214282-42214301 | None:intergenic | 50.0% | |
| TCCAAAGTGACGTTGTTGGC+TGG | - | chr5.4:42214797-42214816 | MS.gene78737:intron | 50.0% | |
| TGAAAAGAGCCGAATGGAGC+AGG | - | chr5.4:42214237-42214256 | MS.gene78737:CDS | 50.0% | |
| TGTGCCAAGTTCTTGGTGGA+GGG | - | chr5.4:42214275-42214294 | MS.gene78737:CDS | 50.0% | |
| ! | AAACGAGAGGAGCGTAGTTG+CGG | + | chr5.4:42213343-42213362 | None:intergenic | 50.0% |
| ! | ACCATCTGATGGTGTGCCTA+AGG | - | chr5.4:42214213-42214232 | MS.gene78737:intron | 50.0% |
| ! | GAGAGCATACCTTGAGAGTG+TGG | + | chr5.4:42213451-42213470 | None:intergenic | 50.0% |
| !! | TCGGTAAAAGGTACTCCCTC+TGG | - | chr5.4:42213935-42213954 | MS.gene78737:intron | 50.0% |
| !! | TGAAAGGTGTCCTGTCCTCA+AGG | - | chr5.4:42214737-42214756 | MS.gene78737:intron | 50.0% |
| CACTCTCTGCCACACTCTCA+AGG | - | chr5.4:42213439-42213458 | MS.gene78737:intron | 55.0% | |
| GAGGACAGGACACCTTTCAG+AGG | + | chr5.4:42214736-42214755 | None:intergenic | 55.0% | |
| GATAGCAGAAGAGGAGGAGG+AGG | + | chr5.4:42213411-42213430 | None:intergenic | 55.0% | |
| GCCAGCCAACAACGTCACTT+TGG | + | chr5.4:42214801-42214820 | None:intergenic | 55.0% | |
| GCCTTAGGCACACCATCAGA+TGG | + | chr5.4:42214217-42214236 | None:intergenic | 55.0% | |
| GTTCTTGGTGGAGGGATGAG+AGG | - | chr5.4:42214283-42214302 | MS.gene78737:CDS | 55.0% | |
| TGGGAACGAACCGAAACGAG+AGG | + | chr5.4:42213356-42213375 | None:intergenic | 55.0% | |
| !! | CGCCGTTGATGATGATGCAG+TGG | + | chr5.4:42213284-42213303 | None:intergenic | 55.0% |
| AGAAGAGGAGGAGGAGGAGG+AGG | + | chr5.4:42213405-42213424 | None:intergenic | 60.0% | |
| AGCAGAAGAGGAGGAGGAGG+AGG | + | chr5.4:42213408-42213427 | None:intergenic | 60.0% | |
| ! | GAGGAGGAGGAGGTGTGAGA+AGG | + | chr5.4:42213395-42213414 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 42213239 | 42215286 | 42213239 | ID=MS.gene78737 |
| chr5.4 | mRNA | 42213239 | 42215286 | 42213239 | ID=MS.gene78737.t1;Parent=MS.gene78737 |
| chr5.4 | exon | 42215065 | 42215286 | 42215065 | ID=MS.gene78737.t1.exon1;Parent=MS.gene78737.t1 |
| chr5.4 | CDS | 42215065 | 42215286 | 42215065 | ID=cds.MS.gene78737.t1;Parent=MS.gene78737.t1 |
| chr5.4 | exon | 42214861 | 42214985 | 42214861 | ID=MS.gene78737.t1.exon2;Parent=MS.gene78737.t1 |
| chr5.4 | CDS | 42214861 | 42214985 | 42214861 | ID=cds.MS.gene78737.t1;Parent=MS.gene78737.t1 |
| chr5.4 | exon | 42214742 | 42214779 | 42214742 | ID=MS.gene78737.t1.exon3;Parent=MS.gene78737.t1 |
| chr5.4 | CDS | 42214742 | 42214779 | 42214742 | ID=cds.MS.gene78737.t1;Parent=MS.gene78737.t1 |
| chr5.4 | exon | 42214221 | 42214331 | 42214221 | ID=MS.gene78737.t1.exon4;Parent=MS.gene78737.t1 |
| chr5.4 | CDS | 42214221 | 42214331 | 42214221 | ID=cds.MS.gene78737.t1;Parent=MS.gene78737.t1 |
| chr5.4 | exon | 42214046 | 42214125 | 42214046 | ID=MS.gene78737.t1.exon5;Parent=MS.gene78737.t1 |
| chr5.4 | CDS | 42214046 | 42214125 | 42214046 | ID=cds.MS.gene78737.t1;Parent=MS.gene78737.t1 |
| chr5.4 | exon | 42213239 | 42213286 | 42213239 | ID=MS.gene78737.t1.exon6;Parent=MS.gene78737.t1 |
| chr5.4 | CDS | 42213239 | 42213286 | 42213239 | ID=cds.MS.gene78737.t1;Parent=MS.gene78737.t1 |
| Gene Sequence |
| Protein sequence |
