AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene79040

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene79040.t1 MTR_6g007663 98.417 379 6 0 1 379 1 379 0.0 755
MS.gene79040.t1 MTR_2g436750 35.974 303 134 4 75 372 47 294 2.88e-55 184
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene79040.t1 AT5G14790 54.167 384 124 8 1 379 1 337 4.53e-118 346
MS.gene79040.t1 AT3G01450 51.832 382 123 5 1 379 1 324 7.75e-113 332
MS.gene79040.t1 AT3G01450 51.832 382 123 5 1 379 1 324 7.75e-113 332
MS.gene79040.t1 AT4G15830 38.188 309 134 4 68 371 38 294 3.61e-60 196
MS.gene79040.t1 AT3G18530 45.126 277 142 5 1 276 1 268 4.13e-53 180
MS.gene79040.t1 AT3G18530 68.382 136 43 0 115 250 9 144 1.32e-50 171
MS.gene79040.t1 AT3G18530 66.400 125 42 0 126 250 1 125 4.74e-43 150

Find 80 sgRNAs with CRISPR-Local

Find 162 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGATCTTATAATAGATTCTT+TGG 0.215909 6.2:+3153650 MS.gene79040:CDS
TCACTCTTCCTTTCAGTTGC+AGG 0.227531 6.2:-3152853 None:intergenic
TTAAGGTATGGTTGCACTTT+TGG 0.258199 6.2:-3153898 None:intergenic
TCTGATACTGTCTCGGTCTT+TGG 0.273864 6.2:-3154832 None:intergenic
TCTGATACTGTCTCGGTCTT+TGG 0.273864 6.2:-3154859 None:intergenic
CAGGAAGCTGGTCGCTCAAT+TGG 0.275487 6.2:-3154714 None:intergenic
TTGGTTTCCCCACATGTTAA+TGG 0.287937 6.2:+3152967 MS.gene79040:CDS
TCAGATACTGTCACGGTCTC+TGG 0.338960 6.2:-3154940 None:intergenic
AGTACAGCTTGAGCACTTAA+AGG 0.343680 6.2:-3155018 None:intergenic
TCAGATACTGTCACGGTCTC+TGG 0.360081 6.2:-3154913 None:intergenic
TTCTCGAAGTGTTCCACAAC+TGG 0.360569 6.2:+3153963 MS.gene79040:CDS
CCCACATGTTAATGGAAATC+AGG 0.366358 6.2:+3152975 MS.gene79040:CDS
AGCAGCTCGAACCCTACTTC+TGG 0.366714 6.2:+3154747 MS.gene79040:CDS
CAAGATTCTGTCGCGATCTC+TGG 0.369704 6.2:-3154967 None:intergenic
CAGAGATCGCGACAGAATCT+TGG 0.372783 6.2:+3154968 MS.gene79040:CDS
AATAGATTCTTTGGATCCTC+TGG 0.383460 6.2:+3153659 MS.gene79040:CDS
AGTGGCTGCTGGCACGAGAT+TGG 0.387556 6.2:-3154797 None:intergenic
GCTGATTCTGTTGTAGAGAT+TGG 0.388850 6.2:+3153006 MS.gene79040:CDS
TAGGGTTCGAGCTGCTTCTC+TGG 0.400244 6.2:-3154740 None:intergenic
GTGGCTGCTGGCACGAGATT+GGG 0.420543 6.2:-3154796 None:intergenic
TGTTAACAGACCCTCTTAGC+TGG 0.450176 6.2:+3153295 MS.gene79040:intron
ACAAGTAGTCATTGATATCA+AGG 0.452524 6.2:-3153854 None:intergenic
CTTGAGCACTTAAAGGAGAA+AGG 0.455045 6.2:-3155011 None:intergenic
AAGACCCTCCCGTGCAATGC+TGG 0.466560 6.2:-3155049 None:intergenic
AGGAAGCTGGTCGCTCAATT+GGG 0.467947 6.2:-3154713 None:intergenic
AGAGATCGCGACAGAATCTT+GGG 0.469637 6.2:+3154969 MS.gene79040:CDS
AGCATTGTCAACAGGAGGCT+TGG 0.476134 6.2:-3152899 None:intergenic
CTGGACTAGACTCAAAGGAT+TGG 0.485003 6.2:+3153314 MS.gene79040:CDS
GCAGAAGGCATAAATACATA+TGG 0.486424 6.2:+3154661 MS.gene79040:CDS
CTTCTCTGGACTCAGGAAGC+TGG 0.493252 6.2:-3154726 None:intergenic
TGCATCCTCTGATACTGTCT+CGG 0.499453 6.2:-3154866 None:intergenic
TGGACTAGACTCAAAGGATT+GGG 0.500742 6.2:+3153315 MS.gene79040:CDS
TGATGCCTTTGCACGAACAC+GGG 0.509631 6.2:-3153932 None:intergenic
AGACTCAAAGGATTGGGTCC+TGG 0.512503 6.2:+3153321 MS.gene79040:CDS
TTGTTTGGATAGGGTGCAGA+AGG 0.515020 6.2:+3154646 MS.gene79040:intron
TTGATGCCTTTGCACGAACA+CGG 0.516013 6.2:-3153933 None:intergenic
TTGAGTCTAGTCCAGCTAAG+AGG 0.519140 6.2:-3153306 None:intergenic
CCAAGGCCCTGAAAAGTCCT+AGG 0.528718 6.2:+3153571 MS.gene79040:CDS
GCTTCTTCTCAAGTCTTCAC+AGG 0.533896 6.2:+3153798 MS.gene79040:CDS
TGGATCCTCTGATACTGTCT+CGG 0.534414 6.2:-3154839 None:intergenic
GAAGAGTGAGGGCTCTGGTA+AGG 0.534884 6.2:+3152867 MS.gene79040:CDS
TCCTCAGATACAGTGGCTGC+TGG 0.535902 6.2:-3154808 None:intergenic
TGTGACCAGCATTGCACGGG+AGG 0.542793 6.2:+3155044 MS.gene79040:CDS
GGGTGCTTGTGCTTAAGGTA+TGG 0.543193 6.2:-3153910 None:intergenic
TTCGTGTGACCAGCATTGCA+CGG 0.548504 6.2:+3155040 MS.gene79040:CDS
TGAGTCTAGTCCAGCTAAGA+GGG 0.551003 6.2:-3153305 None:intergenic
ATAATATTCCTGCAACTGAA+AGG 0.555415 6.2:+3152845 MS.gene79040:CDS
GAAAGGAAGAGTGAGGGCTC+TGG 0.555889 6.2:+3152862 MS.gene79040:CDS
AAAGGTACTCATACCAGTTG+TGG 0.558875 6.2:-3153976 None:intergenic
GCCTGATTTCCATTAACATG+TGG 0.560884 6.2:-3152976 None:intergenic
CGAGCTGCTTCTCTGGACTC+AGG 0.564410 6.2:-3154733 None:intergenic
TCGTGTGACCAGCATTGCAC+GGG 0.575627 6.2:+3155041 MS.gene79040:CDS
ATCTCTACAACAGAATCAGC+AGG 0.577215 6.2:-3153003 None:intergenic
TCATTAGCATTGTCAACAGG+AGG 0.580927 6.2:-3152904 None:intergenic
CCTGATTTCCATTAACATGT+GGG 0.582748 6.2:-3152975 None:intergenic
GATGTCGGAGACAGCACTGA+AGG 0.584563 6.2:+3152816 None:intergenic
AATGTCAGCAGATGTCATAA+TGG 0.592994 6.2:-3153613 None:intergenic
GCCAGCAGCCACTGTATCTG+AGG 0.601163 6.2:+3154807 MS.gene79040:CDS
CTTAGCTGGACTAGACTCAA+AGG 0.601990 6.2:+3153309 MS.gene79040:CDS
GATGCCTTTGCACGAACACG+GGG 0.604224 6.2:-3153931 None:intergenic
TGGATCCTCTGATACTGTCA+CGG 0.608295 6.2:-3154893 None:intergenic
GTGACCAGCATTGCACGGGA+GGG 0.615180 6.2:+3155045 MS.gene79040:CDS
CTGATTTCCATTAACATGTG+GGG 0.618242 6.2:-3152974 None:intergenic
TGCAACTGAAAGGAAGAGTG+AGG 0.618257 6.2:+3152855 MS.gene79040:CDS
AACATGTGGGGAAACCAAAG+AGG 0.636905 6.2:-3152962 None:intergenic
TGTGATCACACGTATTGCCA+AGG 0.639205 6.2:+3153554 MS.gene79040:CDS
TACAACAGAATCAGCAGGCA+CGG 0.640260 6.2:-3152998 None:intergenic
GGACAAACGCTTTGTATGTG+AGG 0.643274 6.2:+3153819 MS.gene79040:CDS
GCAACTGAAAGGAAGAGTGA+GGG 0.647825 6.2:+3152856 MS.gene79040:CDS
TGGTTCCTCAGATACTGTCA+CGG 0.648009 6.2:-3154947 None:intergenic
TATTTAGAGTATCACAAACC+AGG 0.649406 6.2:-3153339 None:intergenic
CTTTGGATCCTCAGATACAG+TGG 0.658342 6.2:-3154815 None:intergenic
AAAGACCGAGACAGTATCAG+AGG 0.660252 6.2:+3154834 MS.gene79040:CDS
AAAGACCGAGACAGTATCAG+AGG 0.660252 6.2:+3154861 MS.gene79040:CDS
TGGATCCTCAGATACTGTCA+CGG 0.660853 6.2:-3154920 None:intergenic
AGAGACCGTGACAGTATCTG+AGG 0.663328 6.2:+3154915 MS.gene79040:CDS
AAATGTTGATGCTTGTGTCA+AGG 0.672297 6.2:+3153077 MS.gene79040:CDS
AGAGACCGTGACAGTATCTG+AGG 0.675746 6.2:+3154942 MS.gene79040:CDS
AAAGACCGTGACAGTATCAG+AGG 0.679340 6.2:+3154888 MS.gene79040:CDS
ATGCCTTTGCACGAACACGG+GGG 0.759816 6.2:-3153930 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATAAACAAATTAATATTTTC+AGG - chr6.2:3154421-3154440 None:intergenic 10.0%
!!! GAAAATATTAATTTGTTTAT+TGG + chr6.2:3154421-3154440 MS.gene79040:intron 10.0%
!!! TAAACAAATTAATATTTTCA+GGG - chr6.2:3154420-3154439 None:intergenic 10.0%
!! AAAACAAACGTAAAAAATTA+TGG - chr6.2:3154183-3154202 None:intergenic 15.0%
!! TAAATTATTCATATGCTATA+TGG + chr6.2:3153518-3153537 MS.gene79040:intron 15.0%
!! TATATAAAGCTAATAATCAA+AGG - chr6.2:3153223-3153242 None:intergenic 15.0%
!!! ATAATTTTTTACGTTTGTTT+TGG + chr6.2:3154182-3154201 MS.gene79040:intron 15.0%
!!! ATTATTTTATCCATCTTTTT+TGG + chr6.2:3153101-3153120 MS.gene79040:intron 15.0%
!!! TTATTTTATCCATCTTTTTT+GGG + chr6.2:3153102-3153121 MS.gene79040:intron 15.0%
!! AGAAGCTTTCTTAAATAATT+TGG - chr6.2:3154243-3154262 None:intergenic 20.0%
!! GAAGCTTTCTTAAATAATTT+GGG - chr6.2:3154242-3154261 None:intergenic 20.0%
!! TAAACTGCTAGTATTAATAT+TGG + chr6.2:3154482-3154501 MS.gene79040:intron 20.0%
!! TGATCTTATAATAGATTCTT+TGG + chr6.2:3153650-3153669 MS.gene79040:CDS 20.0%
!! TTGCAAATTTAATAGTACAA+AGG - chr6.2:3153700-3153719 None:intergenic 20.0%
!!! CAATGATTTTAATTGATACA+TGG + chr6.2:3154388-3154407 MS.gene79040:intron 20.0%
!!! TTAACATCTTCTTTTTTGTT+TGG + chr6.2:3154631-3154650 MS.gene79040:intron 20.0%
! ACATAGCAAAATCAAATAGA+AGG + chr6.2:3154341-3154360 MS.gene79040:intron 25.0%
! CAAATTTAATAGTACAAAGG+AGG - chr6.2:3153697-3153716 None:intergenic 25.0%
! CCTTATGAAAAATAGACAAA+CGG - chr6.2:3153372-3153391 None:intergenic 25.0%
! GTAAATTGACATGTTCTTAA+TGG + chr6.2:3153758-3153777 MS.gene79040:intron 25.0%
! GTCTATGTTAAATTTGTGAA+TGG + chr6.2:3154266-3154285 MS.gene79040:intron 25.0%
! TAACGATACTGACATAAAAT+AGG - chr6.2:3153260-3153279 None:intergenic 25.0%
!! AATATGCAATGGTTTTTGTT+TGG + chr6.2:3153482-3153501 MS.gene79040:intron 25.0%
!! AATGTTTTCTGATTGAAAGA+TGG + chr6.2:3153434-3153453 MS.gene79040:intron 25.0%
!!! AAGTTGATAACCATTGAAAT+TGG + chr6.2:3153148-3153167 MS.gene79040:intron 25.0%
!!! ATCTTCTTTTTTGTTTGGAT+AGG + chr6.2:3154636-3154655 MS.gene79040:intron 25.0%
!!! CTATTTGATTTTGCTATGTT+AGG - chr6.2:3154340-3154359 None:intergenic 25.0%
!!! TAATTGGCTTCCTAAAATTT+TGG - chr6.2:3154117-3154136 None:intergenic 25.0%
!!! TCTTCTTTTTTGTTTGGATA+GGG + chr6.2:3154637-3154656 MS.gene79040:intron 25.0%
!!! TGACATAAAATAGGTATTGA+AGG - chr6.2:3153251-3153270 None:intergenic 25.0%
AACCATTGCATATTAAGCAA+TGG - chr6.2:3153476-3153495 None:intergenic 30.0%
AAGAAGAGCAAAAGTCATAA+AGG - chr6.2:3153997-3154016 None:intergenic 30.0%
AATTGACATGTTCTTAATGG+TGG + chr6.2:3153761-3153780 MS.gene79040:intron 30.0%
ACAAGTAGTCATTGATATCA+AGG - chr6.2:3153857-3153876 None:intergenic 30.0%
ATAATATTCCTGCAACTGAA+AGG + chr6.2:3152845-3152864 MS.gene79040:CDS 30.0%
ATATGCTATATGGTAAACAG+GGG + chr6.2:3153528-3153547 MS.gene79040:intron 30.0%
ATCACAGAAAATCATTTCGT+GGG - chr6.2:3154073-3154092 None:intergenic 30.0%
CATATGCTATATGGTAAACA+GGG + chr6.2:3153527-3153546 MS.gene79040:intron 30.0%
GCTAGGAAGGTTAATAAATA+TGG + chr6.2:3154577-3154596 MS.gene79040:intron 30.0%
TACCATTGCTTAATATGCAA+TGG + chr6.2:3153471-3153490 MS.gene79040:intron 30.0%
TCATATGCTATATGGTAAAC+AGG + chr6.2:3153526-3153545 MS.gene79040:intron 30.0%
TGCTCTGCTAGTATTAATAT+TGG + chr6.2:3154534-3154553 MS.gene79040:intron 30.0%
TTATGGAATTTCATCATCAG+TGG - chr6.2:3154166-3154185 None:intergenic 30.0%
! TATTTAGAGTATCACAAACC+AGG - chr6.2:3153342-3153361 None:intergenic 30.0%
! TTTTCATTAGCATTGTCAAC+AGG - chr6.2:3152910-3152929 None:intergenic 30.0%
!! ATATCTGTTTTGTTCTACCA+TGG + chr6.2:3154509-3154528 MS.gene79040:intron 30.0%
!! CCGTTTGTCTATTTTTCATA+AGG + chr6.2:3153369-3153388 MS.gene79040:CDS 30.0%
AAATGTTGATGCTTGTGTCA+AGG + chr6.2:3153077-3153096 MS.gene79040:CDS 35.0%
AATAGATTCTTTGGATCCTC+TGG + chr6.2:3153659-3153678 MS.gene79040:CDS 35.0%
AATGTCAGCAGATGTCATAA+TGG - chr6.2:3153616-3153635 None:intergenic 35.0%
CATCACAGAAAATCATTTCG+TGG - chr6.2:3154074-3154093 None:intergenic 35.0%
CCTGATTTCCATTAACATGT+GGG - chr6.2:3152978-3152997 None:intergenic 35.0%
CTGATTTCCATTAACATGTG+GGG - chr6.2:3152977-3152996 None:intergenic 35.0%
GAAGAAAAACTGTTCCTCTT+TGG + chr6.2:3152948-3152967 MS.gene79040:CDS 35.0%
GAATTTAATGAAACACCCCA+AGG - chr6.2:3153186-3153205 None:intergenic 35.0%
GATAACCATTGAAATTGGTG+TGG + chr6.2:3153153-3153172 MS.gene79040:intron 35.0%
GTAATCTCAGAATACACTTG+TGG + chr6.2:3153733-3153752 MS.gene79040:intron 35.0%
TATATCTGTTCTGTTCAGCT+AGG + chr6.2:3154560-3154579 MS.gene79040:intron 35.0%
TATGCTATATGGTAAACAGG+GGG + chr6.2:3153529-3153548 MS.gene79040:intron 35.0%
TCTTTGCCTGCATCATTAAT+TGG - chr6.2:3154133-3154152 None:intergenic 35.0%
TTGAACCACACCAATTTCAA+TGG - chr6.2:3153161-3153180 None:intergenic 35.0%
! ACTTTTGGCAGCAATGAAAT+AGG - chr6.2:3153886-3153905 None:intergenic 35.0%
! AGCGACGAAACCAAAATTTT+AGG + chr6.2:3154104-3154123 MS.gene79040:intron 35.0%
! ATGACATCTGCTGACATTTT+CGG + chr6.2:3153618-3153637 MS.gene79040:CDS 35.0%
! CACGAAATGATTTTCTGTGA+TGG + chr6.2:3154072-3154091 MS.gene79040:intron 35.0%
! CTTTTGGCAGCAATGAAATA+GGG - chr6.2:3153885-3153904 None:intergenic 35.0%
! GCAGAAGGCATAAATACATA+TGG + chr6.2:3154661-3154680 MS.gene79040:CDS 35.0%
! TGTTTATTGGGAGCATGTAT+TGG + chr6.2:3154434-3154453 MS.gene79040:intron 35.0%
! TTAAGGTATGGTTGCACTTT+TGG - chr6.2:3153901-3153920 None:intergenic 35.0%
! TTTTGGCAGCAATGAAATAG+GGG - chr6.2:3153884-3153903 None:intergenic 35.0%
!!! ATCCATCTTTTTTGGGTAGA+GGG + chr6.2:3153109-3153128 MS.gene79040:intron 35.0%
!!! TATCCATCTTTTTTGGGTAG+AGG + chr6.2:3153108-3153127 MS.gene79040:intron 35.0%
AGGAAGCCAATTAATGATGC+AGG + chr6.2:3154124-3154143 MS.gene79040:intron 40.0%
AGTACAGCTTGAGCACTTAA+AGG - chr6.2:3155021-3155040 None:intergenic 40.0%
ATCTCTACAACAGAATCAGC+AGG - chr6.2:3153006-3153025 None:intergenic 40.0%
ATGCTATATGGTAAACAGGG+GGG + chr6.2:3153530-3153549 MS.gene79040:intron 40.0%
ATTGGTGTGGTTCAATACCT+TGG + chr6.2:3153166-3153185 MS.gene79040:intron 40.0%
CCCACATGTTAATGGAAATC+AGG + chr6.2:3152975-3152994 MS.gene79040:CDS 40.0%
CTTGAGCACTTAAAGGAGAA+AGG - chr6.2:3155014-3155033 None:intergenic 40.0%
GAGGAATTCTAACTTACCAG+AGG - chr6.2:3153678-3153697 None:intergenic 40.0%
GCCTGATTTCCATTAACATG+TGG - chr6.2:3152979-3152998 None:intergenic 40.0%
GGAGCATGTATTGGATTTCT+AGG + chr6.2:3154443-3154462 MS.gene79040:intron 40.0%
TCATTAGCATTGTCAACAGG+AGG - chr6.2:3152907-3152926 None:intergenic 40.0%
TTGGTGTGGTTCAATACCTT+GGG + chr6.2:3153167-3153186 MS.gene79040:intron 40.0%
TTGGTTTCCCCACATGTTAA+TGG + chr6.2:3152967-3152986 MS.gene79040:CDS 40.0%
! AATACTAGCAGAGCATTCCA+TGG - chr6.2:3154529-3154548 None:intergenic 40.0%
! GCTGATTCTGTTGTAGAGAT+TGG + chr6.2:3153006-3153025 MS.gene79040:CDS 40.0%
! TGGACTAGACTCAAAGGATT+GGG + chr6.2:3153315-3153334 MS.gene79040:CDS 40.0%
!! AAAGGTACTCATACCAGTTG+TGG - chr6.2:3153979-3153998 None:intergenic 40.0%
!! GTTTTGATAACAGCACTCCT+AGG - chr6.2:3153591-3153610 None:intergenic 40.0%
!!! GTTTTGAAGCTCCAGAAGTA+GGG - chr6.2:3154761-3154780 None:intergenic 40.0%
AAAGACCGAGACAGTATCAG+AGG + chr6.2:3154834-3154853 MS.gene79040:CDS 45.0%
AAAGACCGTGACAGTATCAG+AGG + chr6.2:3154888-3154907 MS.gene79040:CDS 45.0%
AACATGTGGGGAAACCAAAG+AGG - chr6.2:3152965-3152984 None:intergenic 45.0%
AGAGATCGCGACAGAATCTT+GGG + chr6.2:3154969-3154988 MS.gene79040:CDS 45.0%
ATGATGCAGGCAAAGAACCT+TGG + chr6.2:3154137-3154156 MS.gene79040:intron 45.0%
ATTCAGTCGCAAACATAGGC+TGG - chr6.2:3154603-3154622 None:intergenic 45.0%
CCACATTCAGTCGCAAACAT+AGG - chr6.2:3154607-3154626 None:intergenic 45.0%
CCTATGTTTGCGACTGAATG+TGG + chr6.2:3154604-3154623 MS.gene79040:intron 45.0%
CTTTGGATCCTCAGATACAG+TGG - chr6.2:3154818-3154837 None:intergenic 45.0%
GCAACTGAAAGGAAGAGTGA+GGG + chr6.2:3152856-3152875 MS.gene79040:CDS 45.0%
GCTTCTTCTCAAGTCTTCAC+AGG + chr6.2:3153798-3153817 MS.gene79040:CDS 45.0%
GGACAAACGCTTTGTATGTG+AGG + chr6.2:3153819-3153838 MS.gene79040:CDS 45.0%
GTCCCTCTACCCAAAAAAGA+TGG - chr6.2:3153114-3153133 None:intergenic 45.0%
TACAACAGAATCAGCAGGCA+CGG - chr6.2:3153001-3153020 None:intergenic 45.0%
TCACTCTTCCTTTCAGTTGC+AGG - chr6.2:3152856-3152875 None:intergenic 45.0%
TCTGATACTGTCTCGGTCTT+TGG - chr6.2:3154835-3154854 None:intergenic 45.0%
TCTGTTCTGTTCAGCTAGGA+AGG + chr6.2:3154564-3154583 MS.gene79040:intron 45.0%
TGAGTCTAGTCCAGCTAAGA+GGG - chr6.2:3153308-3153327 None:intergenic 45.0%
TGCAACTGAAAGGAAGAGTG+AGG + chr6.2:3152855-3152874 MS.gene79040:CDS 45.0%
TGCATCCTCTGATACTGTCT+CGG - chr6.2:3154869-3154888 None:intergenic 45.0%
TGGATCCTCAGATACTGTCA+CGG - chr6.2:3154923-3154942 None:intergenic 45.0%
TGGATCCTCTGATACTGTCA+CGG - chr6.2:3154896-3154915 None:intergenic 45.0%
TGGATCCTCTGATACTGTCT+CGG - chr6.2:3154842-3154861 None:intergenic 45.0%
TGGTGTGGTTCAATACCTTG+GGG + chr6.2:3153168-3153187 MS.gene79040:intron 45.0%
TGGTTCCTCAGATACTGTCA+CGG - chr6.2:3154950-3154969 None:intergenic 45.0%
TGTGATCACACGTATTGCCA+AGG + chr6.2:3153554-3153573 MS.gene79040:CDS 45.0%
TGTTAACAGACCCTCTTAGC+TGG + chr6.2:3153295-3153314 MS.gene79040:intron 45.0%
TTCATCATCAGTGGTGACCA+AGG - chr6.2:3154157-3154176 None:intergenic 45.0%
TTGAGTCTAGTCCAGCTAAG+AGG - chr6.2:3153309-3153328 None:intergenic 45.0%
TTGATGCCTTTGCACGAACA+CGG - chr6.2:3153936-3153955 None:intergenic 45.0%
TTGTTTGGATAGGGTGCAGA+AGG + chr6.2:3154646-3154665 MS.gene79040:intron 45.0%
TTTGGGTAGAGGGACTAGAT+GGG + chr6.2:3153119-3153138 MS.gene79040:intron 45.0%
! AGCACTCCTAGGACTTTTCA+GGG - chr6.2:3153580-3153599 None:intergenic 45.0%
! CTGGACTAGACTCAAAGGAT+TGG + chr6.2:3153314-3153333 MS.gene79040:CDS 45.0%
! CTTAGCTGGACTAGACTCAA+AGG + chr6.2:3153309-3153328 MS.gene79040:CDS 45.0%
! TTCTCGAAGTGTTCCACAAC+TGG + chr6.2:3153963-3153982 MS.gene79040:CDS 45.0%
!! TTTTGGGTAGAGGGACTAGA+TGG + chr6.2:3153118-3153137 MS.gene79040:intron 45.0%
!!! CGTTTTGAAGCTCCAGAAGT+AGG - chr6.2:3154762-3154781 None:intergenic 45.0%
!!! AAAATATTAATTTGTTTATT+GGG + chr6.2:3154422-3154441 MS.gene79040:intron 5.0%
AGACTCAAAGGATTGGGTCC+TGG + chr6.2:3153321-3153340 MS.gene79040:CDS 50.0%
AGAGACCGTGACAGTATCTG+AGG + chr6.2:3154915-3154934 MS.gene79040:CDS 50.0%
AGCATTGTCAACAGGAGGCT+TGG - chr6.2:3152902-3152921 None:intergenic 50.0%
AGGAAGCTGGTCGCTCAATT+GGG - chr6.2:3154716-3154735 None:intergenic 50.0%
CAAGATTCTGTCGCGATCTC+TGG - chr6.2:3154970-3154989 None:intergenic 50.0%
CAGAGATCGCGACAGAATCT+TGG + chr6.2:3154968-3154987 MS.gene79040:CDS 50.0%
GGGTGCTTGTGCTTAAGGTA+TGG - chr6.2:3153913-3153932 None:intergenic 50.0%
TCAGATACTGTCACGGTCTC+TGG - chr6.2:3154916-3154935 None:intergenic 50.0%
TGATGCCTTTGCACGAACAC+GGG - chr6.2:3153935-3153954 None:intergenic 50.0%
TTCGTGTGACCAGCATTGCA+CGG + chr6.2:3155040-3155059 MS.gene79040:CDS 50.0%
! CAGCACTCCTAGGACTTTTC+AGG - chr6.2:3153581-3153600 None:intergenic 50.0%
AGCAGCTCGAACCCTACTTC+TGG + chr6.2:3154747-3154766 MS.gene79040:CDS 55.0%
ATGCCTTTGCACGAACACGG+GGG - chr6.2:3153933-3153952 None:intergenic 55.0%
CAGGAAGCTGGTCGCTCAAT+TGG - chr6.2:3154717-3154736 None:intergenic 55.0%
CCAAGGCCCTGAAAAGTCCT+AGG + chr6.2:3153571-3153590 MS.gene79040:CDS 55.0%
CTTCTCTGGACTCAGGAAGC+TGG - chr6.2:3154729-3154748 None:intergenic 55.0%
GAAAGGAAGAGTGAGGGCTC+TGG + chr6.2:3152862-3152881 MS.gene79040:CDS 55.0%
GATGCCTTTGCACGAACACG+GGG - chr6.2:3153934-3153953 None:intergenic 55.0%
TAGGGTTCGAGCTGCTTCTC+TGG - chr6.2:3154743-3154762 None:intergenic 55.0%
TCCTCAGATACAGTGGCTGC+TGG - chr6.2:3154811-3154830 None:intergenic 55.0%
TCGTGTGACCAGCATTGCAC+GGG + chr6.2:3155041-3155060 MS.gene79040:CDS 55.0%
! GAAGAGTGAGGGCTCTGGTA+AGG + chr6.2:3152867-3152886 MS.gene79040:CDS 55.0%
!! CCTAGGACTTTTCAGGGCCT+TGG - chr6.2:3153574-3153593 None:intergenic 55.0%
AAGACCCTCCCGTGCAATGC+TGG - chr6.2:3155052-3155071 None:intergenic 60.0%
AGTGGCTGCTGGCACGAGAT+TGG - chr6.2:3154800-3154819 None:intergenic 60.0%
CGAGCTGCTTCTCTGGACTC+AGG - chr6.2:3154736-3154755 None:intergenic 60.0%
GCCAGCAGCCACTGTATCTG+AGG + chr6.2:3154807-3154826 MS.gene79040:CDS 60.0%
GTGACCAGCATTGCACGGGA+GGG + chr6.2:3155045-3155064 MS.gene79040:CDS 60.0%
GTGGCTGCTGGCACGAGATT+GGG - chr6.2:3154799-3154818 None:intergenic 60.0%
TGTGACCAGCATTGCACGGG+AGG + chr6.2:3155044-3155063 MS.gene79040:CDS 60.0%
!! CACGGGGGTGCTTGTGCTTA+AGG - chr6.2:3153918-3153937 None:intergenic 60.0%
GCACCCCCGTGTTCGTGCAA+AGG + chr6.2:3153927-3153946 MS.gene79040:CDS 65.0%


Chromosome Type Strat End Strand Name
chr6.2 gene 3152817 3155080 3152817 ID=MS.gene79040
chr6.2 mRNA 3152817 3155080 3152817 ID=MS.gene79040.t1;Parent=MS.gene79040
chr6.2 exon 3152817 3153098 3152817 ID=MS.gene79040.t1.exon1;Parent=MS.gene79040.t1
chr6.2 CDS 3152817 3153098 3152817 ID=cds.MS.gene79040.t1;Parent=MS.gene79040.t1
chr6.2 exon 3153304 3153410 3153304 ID=MS.gene79040.t1.exon2;Parent=MS.gene79040.t1
chr6.2 CDS 3153304 3153410 3153304 ID=cds.MS.gene79040.t1;Parent=MS.gene79040.t1
chr6.2 exon 3153548 3153680 3153548 ID=MS.gene79040.t1.exon3;Parent=MS.gene79040.t1
chr6.2 CDS 3153548 3153680 3153548 ID=cds.MS.gene79040.t1;Parent=MS.gene79040.t1
chr6.2 exon 3153790 3153984 3153790 ID=MS.gene79040.t1.exon4;Parent=MS.gene79040.t1
chr6.2 CDS 3153790 3153984 3153790 ID=cds.MS.gene79040.t1;Parent=MS.gene79040.t1
chr6.2 exon 3154658 3155080 3154658 ID=MS.gene79040.t1.exon5;Parent=MS.gene79040.t1
chr6.2 CDS 3154658 3155080 3154658 ID=cds.MS.gene79040.t1;Parent=MS.gene79040.t1
Gene Sequence

>MS.gene79040

ATGTCGGAGACAGCACTGAAGGATCTCAATAATATTCCTGCAACTGAAAGGAAGAGTGAGGGCTCTGGTAAGGCGTGTTTGACCAAGCCTCCTGTTGACAATGCTAATGAAAATACTGAAGAAAGTCAAAAGAAGAAAAACTGTTCCTCTTTGGTTTCCCCACATGTTAATGGAAATCAGGCCGTGCCTGCTGATTCTGTTGTAGAGATTGGAACTGTAGAAGTAGAATACATTGATTCTGAGAACTTAAATGATCTAGAAAATGTTGATGCTTGTGTCAAGGTATTATTTTATCCATCTTTTTTGGGTAGAGGGACTAGATGGGTTTGAAAAGTTGATAACCATTGAAATTGGTGTGGTTCAATACCTTGGGGTGTTTCATTAAATTCTTTTTCGATATTTACCTTTGATTATTAGCTTTATATAATATTCCTTCAATACCTATTTTATGTCAGTATCGTTATTAGTTATTTTTTTTTGTTAACAGACCCTCTTAGCTGGACTAGACTCAAAGGATTGGGTCCTGGTTTGTGATACTCTAAATAATGTACGCCGTTTGTCTATTTTTCATAAGGAAGCAATGCTTGATATTCTGTAAGTATTGAACTTTTTTCTTCAATGTTTTCTGATTGAAAGATGGTTTTTAAATTAAAATACCATTGCTTAATATGCAATGGTTTTTGTTTGGTTTTATAAGTTATTAAATTATTCATATGCTATATGGTAAACAGGGGGGATGTGATCACACGTATTGCCAAGGCCCTGAAAAGTCCTAGGAGTGCTGTTATCAAAACTGCCATTATGACATCTGCTGACATTTTCGGTGCATATAATGATCTTATAATAGATTCTTTGGATCCTCTGGTAAGTTAGAATTCCTCCTTTGTACTATTAAATTTGCAATCTTAAGCATTATGTAATCTCAGAATACACTTGTGGTAGTAAATTGACATGTTCTTAATGGTGGATGCAGCTACTACAGCTTCTTCTCAAGTCTTCACAGGACAAACGCTTTGTATGTGAGGCAGCAGAAAAAGCCTTGATATCAATGACTACTTGTATTTCCCCTATTTCATTGCTGCCAAAAGTGCAACCATACCTTAAGCACAAGCACCCCCGTGTTCGTGCAAAGGCATCAATGTGCTTTTCTCGAAGTGTTCCACAACTGGTATGAGTACCTTTATGACTTTTGCTCTTCTTGATGACTCTTCATATTGATGTCTTTTAGTTTTAATTTATTTCTAGAGTTGTTTCCCACGAAATGATTTTCTGTGATGGAAAAAGAAAAGCGACGAAACCAAAATTTTAGGAAGCCAATTAATGATGCAGGCAAAGAACCTTGGTCACCACTGATGATGAAATTCCATAATTTTTTACGTTTGTTTTGGACATCTGACTGAATTTGAAAAAAGTTGTTTCAGACCCAAATTATTTAAGAAAGCTTCTCATGTCTATGTTAAATTTGTGAATGGTTTATCATGATCATGCATGTAATTCTGTTGTTGATAATTGATATATTGCCTAACATAGCAAAATCAAATAGAAGGACACTTAGTTGTGTGATCAAATAGCAATGATTTTAATTGATACATGGCATATGCCCTGAAAATATTAATTTGTTTATTGGGAGCATGTATTGGATTTCTAGGTTAATGATTATATGTTTAAACTGCTAGTATTAATATTGGTCTTATATCTGTTTTGTTCTACCATGGAATGCTCTGCTAGTATTAATATTGGTCTTATATCTGTTCTGTTCAGCTAGGAAGGTTAATAAATATGGCCAGCCTATGTTTGCGACTGAATGTGGATCATTAACATCTTCTTTTTTGTTTGGATAGGGTGCAGAAGGCATAAATACATATGGCATTGACAAATTGATTCAAGTAGCTGCATCCCAATTGAGCGACCAGCTTCCTGAGTCCAGAGAAGCAGCTCGAACCCTACTTCTGGAGCTTCAAAACGTGTACGAGAAATTTCCCAATCTCGTGCCAGCAGCCACTGTATCTGAGGATCCAAAGACCGAGACAGTATCAGAGGATCCAAAGACCGAGACAGTATCAGAGGATGCAAAGACCGTGACAGTATCAGAGGATCCAGAGACCGTGACAGTATCTGAGGATCCAGAGACCGTGACAGTATCTGAGGAACCAGAGATCGCGACAGAATCTTGGGAAAGCTTCTGTCAGTCAAACCTTTCTCCTTTAAGTGCTCAAGCTGTACTTCGTGTGACCAGCATTGCACGGGAGGGTCTTGTTTCATGA
Protein sequence

>MS.gene79040.t1

MSETALKDLNNIPATERKSEGSGKACLTKPPVDNANENTEESQKKKNCSSLVSPHVNGNQAVPADSVVEIGTVEVEYIDSENLNDLENVDACVKTLLAGLDSKDWVLVCDTLNNVRRLSIFHKEAMLDILGDVITRIAKALKSPRSAVIKTAIMTSADIFGAYNDLIIDSLDPLLLQLLLKSSQDKRFVCEAAEKALISMTTCISPISLLPKVQPYLKHKHPRVRAKASMCFSRSVPQLGAEGINTYGIDKLIQVAASQLSDQLPESREAARTLLLELQNVYEKFPNLVPAATVSEDPKTETVSEDPKTETVSEDAKTVTVSEDPETVTVSEDPETVTVSEEPEIATESWESFCQSNLSPLSAQAVLRVTSIAREGLVS