Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79219.t1 | XP_003601956.1 | 99.7 | 299 | 1 | 0 | 1 | 299 | 1 | 299 | 1.20E-135 | 492.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79219.t1 | G7J3S2 | 99.7 | 299 | 1 | 0 | 1 | 299 | 1 | 299 | 9.0e-136 | 492.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052209 | MS.gene79219 | 0.917715 | 3.79E-86 | -1.69E-46 |
| MS.gene05652 | MS.gene79219 | 0.801374 | 9.28E-49 | -1.69E-46 |
| MS.gene057669 | MS.gene79219 | 0.857977 | 1.13E-62 | -1.69E-46 |
| MS.gene061061 | MS.gene79219 | 0.800763 | 1.24E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79219.t1 | MTR_3g087250 | 99.666 | 299 | 1 | 0 | 1 | 299 | 1 | 299 | 0.0 | 603 |
| MS.gene79219.t1 | MTR_3g074260 | 59.344 | 305 | 96 | 7 | 3 | 299 | 4 | 288 | 1.14e-107 | 315 |
| MS.gene79219.t1 | MTR_0276s0040 | 50.321 | 312 | 115 | 6 | 5 | 296 | 4 | 295 | 3.30e-89 | 270 |
| MS.gene79219.t1 | MTR_3g074260 | 59.483 | 232 | 75 | 5 | 71 | 299 | 1 | 216 | 2.99e-79 | 239 |
| MS.gene79219.t1 | MTR_3g074260 | 60.891 | 202 | 63 | 5 | 3 | 195 | 4 | 198 | 3.56e-72 | 221 |
| MS.gene79219.t1 | MTR_3g036400 | 58.065 | 62 | 23 | 1 | 71 | 129 | 1 | 62 | 1.35e-14 | 67.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79219.t1 | AT4G39860 | 62.963 | 297 | 109 | 1 | 3 | 299 | 4 | 299 | 5.28e-127 | 364 |
| MS.gene79219.t1 | AT4G39860 | 62.963 | 297 | 109 | 1 | 3 | 299 | 4 | 299 | 5.28e-127 | 364 |
| MS.gene79219.t1 | AT4G39860 | 62.963 | 297 | 109 | 1 | 3 | 299 | 4 | 299 | 5.28e-127 | 364 |
| MS.gene79219.t1 | AT4G39860 | 62.626 | 297 | 109 | 2 | 3 | 299 | 4 | 298 | 2.62e-124 | 357 |
| MS.gene79219.t1 | AT1G78150 | 52.508 | 299 | 112 | 5 | 3 | 299 | 4 | 274 | 1.54e-90 | 271 |
| MS.gene79219.t1 | AT1G78150 | 52.508 | 299 | 112 | 5 | 3 | 299 | 4 | 274 | 1.54e-90 | 271 |
| MS.gene79219.t1 | AT1G35780 | 50.980 | 306 | 118 | 7 | 3 | 299 | 4 | 286 | 6.71e-87 | 262 |
| MS.gene79219.t1 | AT1G78150 | 47.866 | 328 | 112 | 6 | 3 | 299 | 4 | 303 | 3.13e-84 | 255 |
| MS.gene79219.t1 | AT2G22270 | 44.615 | 325 | 140 | 11 | 10 | 299 | 9 | 328 | 1.36e-69 | 219 |
| MS.gene79219.t1 | AT2G22270 | 45.423 | 284 | 116 | 10 | 51 | 299 | 10 | 289 | 2.89e-59 | 191 |
| MS.gene79219.t1 | AT1G35780 | 49.367 | 237 | 87 | 7 | 71 | 299 | 1 | 212 | 1.05e-58 | 187 |
| MS.gene79219.t1 | AT1G35780 | 49.367 | 237 | 87 | 7 | 71 | 299 | 1 | 212 | 1.05e-58 | 187 |
| MS.gene79219.t1 | AT1G35780 | 49.367 | 237 | 87 | 7 | 71 | 299 | 1 | 212 | 1.05e-58 | 187 |
Find 82 sgRNAs with CRISPR-Local
Find 202 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACCGATGTCCTCAAATTTC+TGG | 0.079733 | 3.1:+70233625 | None:intergenic |
| TTAACAGGGTCTTTGATTTC+TGG | 0.136628 | 3.1:+70232382 | None:intergenic |
| CAGAAGTTTGCAGAGCTTTC+AGG | 0.210481 | 3.1:-70232511 | MS.gene79219:CDS |
| GGGCAAAGTAATATCTTATT+TGG | 0.218414 | 3.1:-70232574 | MS.gene79219:CDS |
| CTCTCAGCTTTGCCCTGCTC+AGG | 0.267205 | 3.1:+70232440 | None:intergenic |
| GAAATCAAAGACCCTGTTAA+AGG | 0.278225 | 3.1:-70232379 | MS.gene79219:CDS |
| GGTATAGAGGTAGGCTTCTT+AGG | 0.279404 | 3.1:+70233851 | None:intergenic |
| CTCACTGGAAATGATATATT+TGG | 0.293153 | 3.1:-70233734 | MS.gene79219:CDS |
| GGTTTGCGGGCACCTTTAAC+AGG | 0.293722 | 3.1:+70232367 | None:intergenic |
| TTCTTTGATGTCTTCTCAAC+AGG | 0.305067 | 3.1:+70232544 | None:intergenic |
| ATGGAACGCGGTACAATTTC+AGG | 0.309840 | 3.1:+70233704 | None:intergenic |
| TCCAGTGAGCTCCTTGGTCT+TGG | 0.319341 | 3.1:+70233748 | None:intergenic |
| GCATCTCAGCAAGCAATAAA+TGG | 0.332847 | 3.1:-70233914 | MS.gene79219:intron |
| CTGAAAGCTCTGCAAACTTC+TGG | 0.342314 | 3.1:+70232512 | None:intergenic |
| CTTAGGACTAACACTTTCTT+CGG | 0.378680 | 3.1:+70233868 | None:intergenic |
| AACTAGCATACGCATATATC+AGG | 0.379428 | 3.1:-70234068 | MS.gene79219:intron |
| CATGGCAGCTGCACGAACTT+TGG | 0.379756 | 3.1:-70233684 | MS.gene79219:CDS |
| ACCGATGTCCTCAAATTTCT+GGG | 0.398231 | 3.1:+70233626 | None:intergenic |
| TTCCTGTAATTGTAGCCTGC+TGG | 0.421397 | 3.1:-70232598 | MS.gene79219:intron |
| ACTTTCAGCAAGCCATGCTC+AGG | 0.438294 | 3.1:-70234178 | MS.gene79219:intron |
| TGGGACTTTGCAAACTGACT+TGG | 0.452037 | 3.1:-70233801 | MS.gene79219:CDS |
| TCTCAGCTTTGCCCTGCTCA+GGG | 0.467139 | 3.1:+70232441 | None:intergenic |
| GAGCTTCTTCTTCAGTGAGC+TGG | 0.469415 | 3.1:+70235066 | None:intergenic |
| CTTTGCTACCTCAGGTATAG+AGG | 0.474305 | 3.1:+70233838 | None:intergenic |
| GTCCTCAAATTTCTGGGAAG+AGG | 0.478841 | 3.1:+70233632 | None:intergenic |
| TCACGCTGCTTTGCTACCTC+AGG | 0.479040 | 3.1:+70233830 | None:intergenic |
| GCAATGCTGCTGTCTCCACC+AGG | 0.480965 | 3.1:+70232343 | None:intergenic |
| ATCAGAAGGCTGACGAGAGC+GGG | 0.481733 | 3.1:+70235115 | None:intergenic |
| CTGACGAGAGCGGGTGGCGG+AGG | 0.484128 | 3.1:+70235124 | None:intergenic |
| GAATCAACAACAACGGGAGG+AGG | 0.485353 | 3.1:+70235146 | None:intergenic |
| CAAAGTTCGTGCAGCTGCCA+TGG | 0.485787 | 3.1:+70233685 | None:intergenic |
| CGCGGTACAATTTCAGGAGG+AGG | 0.490011 | 3.1:+70233710 | None:intergenic |
| GCGGAGGAATCAACAACAAC+GGG | 0.491550 | 3.1:+70235140 | None:intergenic |
| CTGTAATTGTAGCCTGCTGG+TGG | 0.494796 | 3.1:-70232595 | MS.gene79219:intron |
| TTCCATGGAGATGTTCCAGC+AGG | 0.495508 | 3.1:-70232478 | MS.gene79219:CDS |
| GCAAAGCTGAGAGAAATAAC+TGG | 0.502572 | 3.1:-70232430 | MS.gene79219:CDS |
| AATGCTGCTGTCTCCACCAG+GGG | 0.506313 | 3.1:+70232345 | None:intergenic |
| AACCTCTTCCCAGAAATTTG+AGG | 0.507551 | 3.1:-70233634 | MS.gene79219:CDS |
| TGCACGAACTTTGGAATCAA+AGG | 0.509149 | 3.1:-70233675 | MS.gene79219:CDS |
| AAGCTCAATCTCTCTCCAAA+AGG | 0.514977 | 3.1:-70235049 | MS.gene79219:intron |
| GCCAAGACCAAGGAGCTCAC+TGG | 0.521289 | 3.1:-70233749 | MS.gene79219:CDS |
| ATATTACTTTGCCCACCAGC+AGG | 0.525761 | 3.1:+70232583 | None:intergenic |
| AGGCTGACGAGAGCGGGTGG+CGG | 0.529442 | 3.1:+70235121 | None:intergenic |
| ATCATTTCCAGTGAGCTCCT+TGG | 0.534478 | 3.1:+70233742 | None:intergenic |
| TGAAATTGTACCGCGTTCCA+TGG | 0.543593 | 3.1:-70233702 | MS.gene79219:CDS |
| TCAACAACAACGGGAGGAGG+AGG | 0.546104 | 3.1:+70235149 | None:intergenic |
| ATCAAAGGAAAGCAAGGACA+TGG | 0.548897 | 3.1:-70233660 | MS.gene79219:CDS |
| GTTTGCGGGCACCTTTAACA+GGG | 0.549073 | 3.1:+70232368 | None:intergenic |
| GAAGATTCTGCATCAGAAGC+CGG | 0.549556 | 3.1:-70234106 | MS.gene79219:CDS |
| AACTATCATAATTTAGAGCA+AGG | 0.555005 | 3.1:+70232321 | None:intergenic |
| GCAAAGCAGCGTGAACTGAG+TGG | 0.567625 | 3.1:-70233821 | MS.gene79219:CDS |
| TTGGTGTGTGTCTTTCTCAC+CGG | 0.575218 | 3.1:+70235203 | None:intergenic |
| ACACTTCCGATCTCCTCACT+TGG | 0.577893 | 3.1:-70235181 | MS.gene79219:CDS |
| TTTGGAATCAAAGGAAAGCA+AGG | 0.578160 | 3.1:-70233666 | MS.gene79219:CDS |
| TCCCAGAAATTTGAGGACAT+CGG | 0.579400 | 3.1:-70233627 | MS.gene79219:CDS |
| ATCCTGCTGGAACATCTCCA+TGG | 0.579980 | 3.1:+70232476 | None:intergenic |
| GGCAGTGACATATTTGCTGA+TGG | 0.581577 | 3.1:-70232409 | MS.gene79219:CDS |
| GCTACCTCAGGTATAGAGGT+AGG | 0.582241 | 3.1:+70233842 | None:intergenic |
| ATGAAAGAGATGAGTGGACA+TGG | 0.583015 | 3.1:-70234148 | MS.gene79219:CDS |
| AGTGAGGAGATCGGAAGTGT+TGG | 0.589898 | 3.1:+70235184 | None:intergenic |
| TTCCGATCTCCTCACTTGGT+CGG | 0.594758 | 3.1:-70235177 | MS.gene79219:CDS |
| CAATGCTGCTGTCTCCACCA+GGG | 0.594808 | 3.1:+70232344 | None:intergenic |
| TTCCGACCAAGTGAGGAGAT+CGG | 0.598387 | 3.1:+70235175 | None:intergenic |
| CGTGCAGCTGCCATGGAACG+CGG | 0.599947 | 3.1:+70233692 | None:intergenic |
| AACAACAATGGGAAGCACTC+CGG | 0.604363 | 3.1:-70235222 | None:intergenic |
| TATAAAATGAAAGAGATGAG+TGG | 0.604599 | 3.1:-70234154 | MS.gene79219:CDS |
| CAAAGCAGCGTGAACTGAGT+GGG | 0.604931 | 3.1:-70233820 | MS.gene79219:CDS |
| ACCTTGCTGATTCTATCAGA+AGG | 0.610704 | 3.1:+70235101 | None:intergenic |
| AGAAGGCTGACGAGAGCGGG+TGG | 0.616356 | 3.1:+70235118 | None:intergenic |
| TATCAGAAGGCTGACGAGAG+CGG | 0.623249 | 3.1:+70235114 | None:intergenic |
| GAGGAATCAACAACAACGGG+AGG | 0.627908 | 3.1:+70235143 | None:intergenic |
| GAGGAACTTCCGACCAAGTG+AGG | 0.628730 | 3.1:+70235168 | None:intergenic |
| ATGCTGCTGTCTCCACCAGG+GGG | 0.629578 | 3.1:+70232346 | None:intergenic |
| GCGGTACAATTTCAGGAGGA+GGG | 0.631603 | 3.1:+70233711 | None:intergenic |
| GCCTTCTGATAGAATCAGCA+AGG | 0.638816 | 3.1:-70235102 | MS.gene79219:CDS |
| TGTAATTGTAGCCTGCTGGT+GGG | 0.644942 | 3.1:-70232594 | MS.gene79219:intron |
| CTTTCAGCAAGCCATGCTCA+GGG | 0.644956 | 3.1:-70234177 | MS.gene79219:intron |
| AATATCAAATGCCAAGACCA+AGG | 0.645109 | 3.1:-70233759 | MS.gene79219:CDS |
| GGCGGAGGAATCAACAACAA+CGG | 0.655351 | 3.1:+70235139 | None:intergenic |
| TCAAAGGAAAGCAAGGACAT+GGG | 0.665351 | 3.1:-70233659 | MS.gene79219:CDS |
| GAAGCCTACCTCTATACCTG+AGG | 0.688793 | 3.1:-70233846 | MS.gene79219:CDS |
| GAACGCGGTACAATTTCAGG+AGG | 0.704954 | 3.1:+70233707 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CAATTCAAATTGAAAATAAA+CGG | + | chr3.1:70232753-70232772 | None:intergenic | 15.0% |
| !!! | ACTCTTCATTTTTATTTTTT+TGG | - | chr3.1:70234214-70234233 | MS.gene79219:intron | 15.0% |
| !!! | CTCTTCATTTTTATTTTTTT+GGG | - | chr3.1:70234215-70234234 | MS.gene79219:intron | 15.0% |
| !!! | TAAAATTTAAGTCTGTTTTT+GGG | - | chr3.1:70234523-70234542 | MS.gene79219:intron | 15.0% |
| !!! | TATAATATTTTCTTATGACA+TGG | - | chr3.1:70234046-70234065 | MS.gene79219:intron | 15.0% |
| !!! | TCAAAATCTACTTTTAAATT+TGG | - | chr3.1:70232869-70232888 | MS.gene79219:intron | 15.0% |
| !!! | TCTTCATTTTTATTTTTTTG+GGG | - | chr3.1:70234216-70234235 | MS.gene79219:intron | 15.0% |
| !! | AAACACATAAAAGAAACAAA+TGG | + | chr3.1:70234760-70234779 | None:intergenic | 20.0% |
| !! | TCAATTTGATGTTTGAAAAA+TGG | + | chr3.1:70233557-70233576 | None:intergenic | 20.0% |
| !! | TCATATTTAAGTGTTTGTTT+AGG | + | chr3.1:70233244-70233263 | None:intergenic | 20.0% |
| !!! | AAAAAAATCACTTTTTTGTG+TGG | + | chr3.1:70233093-70233112 | None:intergenic | 20.0% |
| !!! | AGAAAAAAATCTGAAACAAA+CGG | - | chr3.1:70233281-70233300 | MS.gene79219:intron | 20.0% |
| !!! | ATATTTAAATTTTGCATTCC+AGG | + | chr3.1:70234188-70234207 | None:intergenic | 20.0% |
| !!! | ATCTGTTTCTTAATTTGAAA+TGG | - | chr3.1:70232640-70232659 | MS.gene79219:intron | 20.0% |
| !!! | ATTAGCTTTTTTCAAATACA+AGG | + | chr3.1:70233157-70233176 | None:intergenic | 20.0% |
| !!! | ATTCACAATTTTCATAACAA+AGG | + | chr3.1:70233309-70233328 | None:intergenic | 20.0% |
| !!! | GTAAAATTTAAGTCTGTTTT+TGG | - | chr3.1:70234522-70234541 | MS.gene79219:intron | 20.0% |
| ! | AAAAGAAACAAATGGACAAA+TGG | + | chr3.1:70234752-70234771 | None:intergenic | 25.0% |
| ! | AAAGAAACAAATGGACAAAT+GGG | + | chr3.1:70234751-70234770 | None:intergenic | 25.0% |
| ! | AACTCGTAAGTCATAAATAT+GGG | + | chr3.1:70234907-70234926 | None:intergenic | 25.0% |
| ! | AATTAAGAAACAGATCTATG+CGG | + | chr3.1:70232635-70232654 | None:intergenic | 25.0% |
| ! | ATGTTTGAAAAATGGCTATA+AGG | + | chr3.1:70233549-70233568 | None:intergenic | 25.0% |
| ! | GCATATATCAGGTTTATATT+TGG | - | chr3.1:70233491-70233510 | MS.gene79219:intron | 25.0% |
| ! | TAACTCGTAAGTCATAAATA+TGG | + | chr3.1:70234908-70234927 | None:intergenic | 25.0% |
| ! | TATAAAATGAAAGAGATGAG+TGG | - | chr3.1:70233394-70233413 | MS.gene79219:intron | 25.0% |
| ! | TTCAAACATCAAATTGAACT+CGG | - | chr3.1:70233560-70233579 | MS.gene79219:intron | 25.0% |
| ! | TTTAGTTGAATCAAGATTAG+TGG | - | chr3.1:70232797-70232816 | MS.gene79219:intron | 25.0% |
| !! | AAAAAAATCTGAAACAAACG+GGG | - | chr3.1:70233283-70233302 | MS.gene79219:intron | 25.0% |
| !! | AAAACTATTTTCTCACAAAC+TGG | + | chr3.1:70234865-70234884 | None:intergenic | 25.0% |
| !! | AGTTTTTGAATTAACAGAAC+CGG | + | chr3.1:70233464-70233483 | None:intergenic | 25.0% |
| !! | GAAAAAAATCTGAAACAAAC+GGG | - | chr3.1:70233282-70233301 | MS.gene79219:intron | 25.0% |
| !!! | ATTTTTATTTTTTTGGGGTG+GGG | - | chr3.1:70234221-70234240 | MS.gene79219:intron | 25.0% |
| !!! | CATTTTTATTTTTTTGGGGT+GGG | - | chr3.1:70234220-70234239 | MS.gene79219:intron | 25.0% |
| !!! | CTCTAAAATGAAAAGCTATA+AGG | + | chr3.1:70233180-70233199 | None:intergenic | 25.0% |
| !!! | GAATTAAAGAAAGTGTTTTC+AGG | - | chr3.1:70232722-70232741 | MS.gene79219:intron | 25.0% |
| !!! | TCATTTTTATTTTTTTGGGG+TGG | - | chr3.1:70234219-70234238 | MS.gene79219:intron | 25.0% |
| !!! | TGTCTTTGAAATTTCTATGA+TGG | - | chr3.1:70234478-70234497 | MS.gene79219:intron | 25.0% |
| AAGACAATGTAACAAACTGA+TGG | + | chr3.1:70234464-70234483 | None:intergenic | 30.0% | |
| AAGATTCAGGTAGTTGTTAA+TGG | + | chr3.1:70234114-70234133 | None:intergenic | 30.0% | |
| ACTCGTAAGTCATAAATATG+GGG | + | chr3.1:70234906-70234925 | None:intergenic | 30.0% | |
| CTCACTGGAAATGATATATT+TGG | - | chr3.1:70233814-70233833 | MS.gene79219:CDS | 30.0% | |
| GAAAATTGTGAATCTAAGCT+AGG | - | chr3.1:70233316-70233335 | MS.gene79219:intron | 30.0% | |
| GGGCAAAGTAATATCTTATT+TGG | - | chr3.1:70234974-70234993 | MS.gene79219:intron | 30.0% | |
| GTAAAAGATCTGATCTGAAA+AGG | + | chr3.1:70232551-70232570 | None:intergenic | 30.0% | |
| TAAGATGTGTGTGTTATGTT+TGG | - | chr3.1:70234592-70234611 | MS.gene79219:intron | 30.0% | |
| TTATCGATATGAATTGAGCT+AGG | - | chr3.1:70234069-70234088 | MS.gene79219:CDS | 30.0% | |
| TTCTAATGTAAGTGTCTTCT+AGG | - | chr3.1:70233951-70233970 | MS.gene79219:intron | 30.0% | |
| ! | ATTTGGCAAAAGCTACATTT+TGG | + | chr3.1:70234670-70234689 | None:intergenic | 30.0% |
| ! | TCAGGCAATAATATTTTCCA+TGG | - | chr3.1:70235055-70235074 | MS.gene79219:CDS | 30.0% |
| !! | AAATGAAAGTACGTACCTTT+TGG | + | chr3.1:70232517-70232536 | None:intergenic | 30.0% |
| !! | TGGCTTCAATTTAATTTGAC+AGG | + | chr3.1:70234413-70234432 | None:intergenic | 30.0% |
| !!! | AGCTTTTTTCAAATACAAGG+AGG | + | chr3.1:70233154-70233173 | None:intergenic | 30.0% |
| !!! | TTTTTATTTTTTTGGGGTGG+GGG | - | chr3.1:70234222-70234241 | MS.gene79219:intron | 30.0% |
| AACAACTACCTGAATCTTAG+TGG | - | chr3.1:70234116-70234135 | MS.gene79219:CDS | 35.0% | |
| AACTAGCATACGCATATATC+AGG | - | chr3.1:70233480-70233499 | MS.gene79219:intron | 35.0% | |
| AAGATCTGATCTGAAAAGGA+AGG | + | chr3.1:70232547-70232566 | None:intergenic | 35.0% | |
| AATATCAAATGCCAAGACCA+AGG | - | chr3.1:70233789-70233808 | MS.gene79219:CDS | 35.0% | |
| ACACATTCACGTAGTTAACA+TGG | + | chr3.1:70232924-70232943 | None:intergenic | 35.0% | |
| ATAAGCAGTAGGTACTTTGT+AGG | + | chr3.1:70234809-70234828 | None:intergenic | 35.0% | |
| ATGCAATCTGCAATCTTATG+TGG | - | chr3.1:70232774-70232793 | MS.gene79219:intron | 35.0% | |
| CTACAATTACAGGAAAAGGA+AGG | + | chr3.1:70234945-70234964 | None:intergenic | 35.0% | |
| CTTAGGACTAACACTTTCTT+CGG | + | chr3.1:70233683-70233702 | None:intergenic | 35.0% | |
| GAAATCAAAGACCCTGTTAA+AGG | - | chr3.1:70235169-70235188 | MS.gene79219:CDS | 35.0% | |
| GAGATTGACGAAATCACAAT+TGG | + | chr3.1:70234702-70234721 | None:intergenic | 35.0% | |
| GATCGAAGAACGATCAAAAA+AGG | + | chr3.1:70232587-70232606 | None:intergenic | 35.0% | |
| GTGTGTTATGTTTGGATTGA+CGG | - | chr3.1:70234600-70234619 | MS.gene79219:intron | 35.0% | |
| TGTTGAGCTAAATAAGCAGT+AGG | + | chr3.1:70234820-70234839 | None:intergenic | 35.0% | |
| TTCTTTGATGTCTTCTCAAC+AGG | + | chr3.1:70235007-70235026 | None:intergenic | 35.0% | |
| ! | CATGGTATATTTTCGGACAA+TGG | - | chr3.1:70233418-70233437 | MS.gene79219:intron | 35.0% |
| ! | CTATTTTCTCACAAACTGGA+CGG | + | chr3.1:70234861-70234880 | None:intergenic | 35.0% |
| ! | GAGTGGACATGGTATATTTT+CGG | - | chr3.1:70233411-70233430 | MS.gene79219:intron | 35.0% |
| ! | TGTAGCTTTTGCCAAATTCT+TGG | - | chr3.1:70234673-70234692 | MS.gene79219:intron | 35.0% |
| ! | TTAACAGGGTCTTTGATTTC+TGG | + | chr3.1:70235169-70235188 | None:intergenic | 35.0% |
| ! | TTCATTTTATACCCTGAGCA+TGG | + | chr3.1:70233385-70233404 | None:intergenic | 35.0% |
| ! | TTTGGAATCAAAGGAAAGCA+AGG | - | chr3.1:70233882-70233901 | MS.gene79219:CDS | 35.0% |
| !!! | AAGATTTTAGTTTGGGGGTT+GGG | - | chr3.1:70234254-70234273 | MS.gene79219:intron | 35.0% |
| !!! | AGGGGGTAAGATTTTAGTTT+GGG | - | chr3.1:70234247-70234266 | MS.gene79219:intron | 35.0% |
| !!! | TAAGATTTTAGTTTGGGGGT+TGG | - | chr3.1:70234253-70234272 | MS.gene79219:intron | 35.0% |
| !!! | TAAGTCTGTTTTTGGGTGTT+GGG | - | chr3.1:70234530-70234549 | MS.gene79219:intron | 35.0% |
| !!! | TAGGGGGTAAGATTTTAGTT+TGG | - | chr3.1:70234246-70234265 | MS.gene79219:intron | 35.0% |
| !!! | TTAAGTCTGTTTTTGGGTGT+TGG | - | chr3.1:70234529-70234548 | MS.gene79219:intron | 35.0% |
| AACCTCTTCCCAGAAATTTG+AGG | - | chr3.1:70233914-70233933 | MS.gene79219:intron | 40.0% | |
| AAGCTCAATCTCTCTCCAAA+AGG | - | chr3.1:70232499-70232518 | MS.gene79219:CDS | 40.0% | |
| AATGGGACTGAGAACTTGAT+TGG | + | chr3.1:70234734-70234753 | None:intergenic | 40.0% | |
| ACAATTGGCCACCAAGAATT+TGG | + | chr3.1:70234687-70234706 | None:intergenic | 40.0% | |
| ACCGATGTCCTCAAATTTCT+GGG | + | chr3.1:70233925-70233944 | None:intergenic | 40.0% | |
| ATCAAAGGAAAGCAAGGACA+TGG | - | chr3.1:70233888-70233907 | MS.gene79219:CDS | 40.0% | |
| ATCGTTGGATTGAGATCAGA+CGG | + | chr3.1:70232896-70232915 | None:intergenic | 40.0% | |
| ATGAAAGAGATGAGTGGACA+TGG | - | chr3.1:70233400-70233419 | MS.gene79219:intron | 40.0% | |
| ATGGCTATAAGGTCTCAAAC+TGG | + | chr3.1:70233538-70233557 | None:intergenic | 40.0% | |
| ATTCATCGCCACTAAGATTC+AGG | + | chr3.1:70234127-70234146 | None:intergenic | 40.0% | |
| CAGGCTACAATTACAGGAAA+AGG | + | chr3.1:70234949-70234968 | None:intergenic | 40.0% | |
| CAGTTTACCTTATGCTTTCC+TGG | - | chr3.1:70234167-70234186 | MS.gene79219:CDS | 40.0% | |
| CGGTGAGTTTGGTAAAATCA+CGG | - | chr3.1:70234620-70234639 | MS.gene79219:intron | 40.0% | |
| GCAAAGCTGAGAGAAATAAC+TGG | - | chr3.1:70235118-70235137 | MS.gene79219:CDS | 40.0% | |
| GCATCTCAGCAAGCAATAAA+TGG | - | chr3.1:70233634-70233653 | MS.gene79219:CDS | 40.0% | |
| GTGTAAGATGTCCACAAGAT+TGG | + | chr3.1:70234353-70234372 | None:intergenic | 40.0% | |
| GTTAACATGGATGTGATCGT+TGG | + | chr3.1:70232911-70232930 | None:intergenic | 40.0% | |
| TAATACTGTTGCAGCACATG+AGG | - | chr3.1:70234326-70234345 | MS.gene79219:intron | 40.0% | |
| TCAAACTGGACTCAAGATCA+AGG | + | chr3.1:70233524-70233543 | None:intergenic | 40.0% | |
| TCAAAGGAAAGCAAGGACAT+GGG | - | chr3.1:70233889-70233908 | MS.gene79219:CDS | 40.0% | |
| TCCCAGAAATTTGAGGACAT+CGG | - | chr3.1:70233921-70233940 | MS.gene79219:intron | 40.0% | |
| TGTGAATCTAAGCTAGGAGA+TGG | - | chr3.1:70233322-70233341 | MS.gene79219:intron | 40.0% | |
| ! | AGCTTTTGCCAAATTCTTGG+TGG | - | chr3.1:70234676-70234695 | MS.gene79219:intron | 40.0% |
| ! | CAGGAAAGCATAAGGTAAAC+TGG | + | chr3.1:70234169-70234188 | None:intergenic | 40.0% |
| ! | GAAAGCATAAGGTAAACTGG+TGG | + | chr3.1:70234166-70234185 | None:intergenic | 40.0% |
| ! | TAACAAACTGATGGACCTTC+CGG | + | chr3.1:70234455-70234474 | None:intergenic | 40.0% |
| ! | TTGCATTCCAGGAAAGCATA+AGG | + | chr3.1:70234177-70234196 | None:intergenic | 40.0% |
| !! | ACCTTGCTGATTCTATCAGA+AGG | + | chr3.1:70232450-70232469 | None:intergenic | 40.0% |
| !! | TGCACGAACTTTGGAATCAA+AGG | - | chr3.1:70233873-70233892 | MS.gene79219:CDS | 40.0% |
| !!! | AAGTCTGTTTTTGGGTGTTG+GGG | - | chr3.1:70234531-70234550 | MS.gene79219:intron | 40.0% |
| !!! | AGATTTTAGTTTGGGGGTTG+GGG | - | chr3.1:70234255-70234274 | MS.gene79219:intron | 40.0% |
| !!! | GGGGGTAAGATTTTAGTTTG+GGG | - | chr3.1:70234248-70234267 | MS.gene79219:intron | 40.0% |
| !!! | GGGGTAAGATTTTAGTTTGG+GGG | - | chr3.1:70234249-70234268 | MS.gene79219:intron | 40.0% |
| AACTGCACATGCATTGCATC+CGG | - | chr3.1:70234433-70234452 | MS.gene79219:intron | 45.0% | |
| AGCTGAAAAATCCCTGAGCA+GGG | - | chr3.1:70235096-70235115 | MS.gene79219:CDS | 45.0% | |
| ATATTACTTTGCCCACCAGC+AGG | + | chr3.1:70234968-70234987 | None:intergenic | 45.0% | |
| ATCATTTCCAGTGAGCTCCT+TGG | + | chr3.1:70233809-70233828 | None:intergenic | 45.0% | |
| ATGGAACGCGGTACAATTTC+AGG | + | chr3.1:70233847-70233866 | None:intergenic | 45.0% | |
| CACCGATGTCCTCAAATTTC+TGG | + | chr3.1:70233926-70233945 | None:intergenic | 45.0% | |
| CAGAAGTTTGCAGAGCTTTC+AGG | - | chr3.1:70235037-70235056 | MS.gene79219:intron | 45.0% | |
| CAGGAAAAGGAAGGTTAACC+TGG | + | chr3.1:70234936-70234955 | None:intergenic | 45.0% | |
| CTCACAAACTGGACGGTTTA+AGG | + | chr3.1:70234854-70234873 | None:intergenic | 45.0% | |
| CTGAAAGCTCTGCAAACTTC+TGG | + | chr3.1:70235039-70235058 | None:intergenic | 45.0% | |
| CTTTGCTACCTCAGGTATAG+AGG | + | chr3.1:70233713-70233732 | None:intergenic | 45.0% | |
| GAAGATTCTGCATCAGAAGC+CGG | - | chr3.1:70233442-70233461 | MS.gene79219:intron | 45.0% | |
| GACAGGCACATGTTAAGAGA+AGG | + | chr3.1:70234396-70234415 | None:intergenic | 45.0% | |
| GATGCAATGCATGTGCAGTT+TGG | + | chr3.1:70234433-70234452 | None:intergenic | 45.0% | |
| GCATAAGGTAAACTGGTGGA+TGG | + | chr3.1:70234162-70234181 | None:intergenic | 45.0% | |
| GCCTTCTGATAGAATCAGCA+AGG | - | chr3.1:70232446-70232465 | MS.gene79219:CDS | 45.0% | |
| GGTATAGAGGTAGGCTTCTT+AGG | + | chr3.1:70233700-70233719 | None:intergenic | 45.0% | |
| GTTTGGATTGACGGTGAGTT+TGG | - | chr3.1:70234609-70234628 | MS.gene79219:intron | 45.0% | |
| TGAAATTGTACCGCGTTCCA+TGG | - | chr3.1:70233846-70233865 | MS.gene79219:CDS | 45.0% | |
| TGGGACTTTGCAAACTGACT+TGG | - | chr3.1:70233747-70233766 | MS.gene79219:CDS | 45.0% | |
| TGTAATTGTAGCCTGCTGGT+GGG | - | chr3.1:70234954-70234973 | MS.gene79219:intron | 45.0% | |
| TTCCTGTAATTGTAGCCTGC+TGG | - | chr3.1:70234950-70234969 | MS.gene79219:intron | 45.0% | |
| TTGGTGTGTGTCTTTCTCAC+CGG | + | chr3.1:70232348-70232367 | None:intergenic | 45.0% | |
| ! | GGCAGTGACATATTTGCTGA+TGG | - | chr3.1:70235139-70235158 | MS.gene79219:CDS | 45.0% |
| ! | GTAAACTGGTGGATGGTCAA+GGG | + | chr3.1:70234155-70234174 | None:intergenic | 45.0% |
| ! | GTCCTCAAATTTCTGGGAAG+AGG | + | chr3.1:70233919-70233938 | None:intergenic | 45.0% |
| !! | GATTTTTCAGCTGATCCTGC+TGG | + | chr3.1:70235088-70235107 | None:intergenic | 45.0% |
| !!! | AGTCTGTTTTTGGGTGTTGG+GGG | - | chr3.1:70234532-70234551 | MS.gene79219:intron | 45.0% |
| !!! | ATTTTTTTGGGGTGGGGGTT+AGG | - | chr3.1:70234227-70234246 | MS.gene79219:intron | 45.0% |
| !!! | GATTTTAGTTTGGGGGTTGG+GGG | - | chr3.1:70234256-70234275 | MS.gene79219:intron | 45.0% |
| !!! | TTTTTTTGGGGTGGGGGTTA+GGG | - | chr3.1:70234228-70234247 | MS.gene79219:intron | 45.0% |
| ACACTTCCGATCTCCTCACT+TGG | - | chr3.1:70232367-70232386 | MS.gene79219:CDS | 50.0% | |
| ACTTTCAGCAAGCCATGCTC+AGG | - | chr3.1:70233370-70233389 | MS.gene79219:intron | 50.0% | |
| ATCCTGCTGGAACATCTCCA+TGG | + | chr3.1:70235075-70235094 | None:intergenic | 50.0% | |
| CAAAGCAGCGTGAACTGAGT+GGG | - | chr3.1:70233728-70233747 | MS.gene79219:CDS | 50.0% | |
| CACCAGCAGGCTACAATTAC+AGG | + | chr3.1:70234955-70234974 | None:intergenic | 50.0% | |
| CAGCTGAAAAATCCCTGAGC+AGG | - | chr3.1:70235095-70235114 | MS.gene79219:CDS | 50.0% | |
| CTGTAATTGTAGCCTGCTGG+TGG | - | chr3.1:70234953-70234972 | MS.gene79219:intron | 50.0% | |
| CTTTCAGCAAGCCATGCTCA+GGG | - | chr3.1:70233371-70233390 | MS.gene79219:intron | 50.0% | |
| GAACGCGGTACAATTTCAGG+AGG | + | chr3.1:70233844-70233863 | None:intergenic | 50.0% | |
| GAAGCCTACCTCTATACCTG+AGG | - | chr3.1:70233702-70233721 | MS.gene79219:CDS | 50.0% | |
| GAATCAACAACAACGGGAGG+AGG | + | chr3.1:70232405-70232424 | None:intergenic | 50.0% | |
| GACTTACGAGTTACGACTCC+AGG | - | chr3.1:70234915-70234934 | MS.gene79219:intron | 50.0% | |
| GAGCTTCTTCTTCAGTGAGC+TGG | + | chr3.1:70232485-70232504 | None:intergenic | 50.0% | |
| GAGGAATCAACAACAACGGG+AGG | + | chr3.1:70232408-70232427 | None:intergenic | 50.0% | |
| GCACATGAGGACCAATCTTG+TGG | - | chr3.1:70234339-70234358 | MS.gene79219:intron | 50.0% | |
| GCGGAGGAATCAACAACAAC+GGG | + | chr3.1:70232411-70232430 | None:intergenic | 50.0% | |
| GCGGTACAATTTCAGGAGGA+GGG | + | chr3.1:70233840-70233859 | None:intergenic | 50.0% | |
| GCTACCTCAGGTATAGAGGT+AGG | + | chr3.1:70233709-70233728 | None:intergenic | 50.0% | |
| GGCGGAGGAATCAACAACAA+CGG | + | chr3.1:70232412-70232431 | None:intergenic | 50.0% | |
| GTTTGCGGGCACCTTTAACA+GGG | + | chr3.1:70235183-70235202 | None:intergenic | 50.0% | |
| TATCAGAAGGCTGACGAGAG+CGG | + | chr3.1:70232437-70232456 | None:intergenic | 50.0% | |
| TTCCATGGAGATGTTCCAGC+AGG | - | chr3.1:70235070-70235089 | MS.gene79219:CDS | 50.0% | |
| TTCCGACCAAGTGAGGAGAT+CGG | + | chr3.1:70232376-70232395 | None:intergenic | 50.0% | |
| TTCCGATCTCCTCACTTGGT+CGG | - | chr3.1:70232371-70232390 | MS.gene79219:CDS | 50.0% | |
| ! | AGTGAGGAGATCGGAAGTGT+TGG | + | chr3.1:70232367-70232386 | None:intergenic | 50.0% |
| ! | GGTAAACTGGTGGATGGTCA+AGG | + | chr3.1:70234156-70234175 | None:intergenic | 50.0% |
| !!! | TGTTTTTGGGTGTTGGGGGT+GGG | - | chr3.1:70234536-70234555 | MS.gene79219:intron | 50.0% |
| !!! | TTTTTTGGGGTGGGGGTTAG+GGG | - | chr3.1:70234229-70234248 | MS.gene79219:intron | 50.0% |
| AATGCTGCTGTCTCCACCAG+GGG | + | chr3.1:70235206-70235225 | None:intergenic | 55.0% | |
| ATCAGAAGGCTGACGAGAGC+GGG | + | chr3.1:70232436-70232455 | None:intergenic | 55.0% | |
| CAAAGTTCGTGCAGCTGCCA+TGG | + | chr3.1:70233866-70233885 | None:intergenic | 55.0% | |
| CAATGCTGCTGTCTCCACCA+GGG | + | chr3.1:70235207-70235226 | None:intergenic | 55.0% | |
| CATGGCAGCTGCACGAACTT+TGG | - | chr3.1:70233864-70233883 | MS.gene79219:CDS | 55.0% | |
| CGCGGTACAATTTCAGGAGG+AGG | + | chr3.1:70233841-70233860 | None:intergenic | 55.0% | |
| GAGGAACTTCCGACCAAGTG+AGG | + | chr3.1:70232383-70232402 | None:intergenic | 55.0% | |
| GCAAAGCAGCGTGAACTGAG+TGG | - | chr3.1:70233727-70233746 | MS.gene79219:CDS | 55.0% | |
| GCACATGCATTGCATCCGGA+AGG | - | chr3.1:70234437-70234456 | MS.gene79219:intron | 55.0% | |
| GGTTTGCGGGCACCTTTAAC+AGG | + | chr3.1:70235184-70235203 | None:intergenic | 55.0% | |
| TCAACAACAACGGGAGGAGG+AGG | + | chr3.1:70232402-70232421 | None:intergenic | 55.0% | |
| TCCAGTGAGCTCCTTGGTCT+TGG | + | chr3.1:70233803-70233822 | None:intergenic | 55.0% | |
| TCTCAGCTTTGCCCTGCTCA+GGG | + | chr3.1:70235110-70235129 | None:intergenic | 55.0% | |
| ! | TCACGCTGCTTTGCTACCTC+AGG | + | chr3.1:70233721-70233740 | None:intergenic | 55.0% |
| !!! | CTGTTTTTGGGTGTTGGGGG+TGG | - | chr3.1:70234535-70234554 | MS.gene79219:intron | 55.0% |
| !!! | GTTTTTGGGTGTTGGGGGTG+GGG | - | chr3.1:70234537-70234556 | MS.gene79219:intron | 55.0% |
| !!! | TTTTTGGGGTGGGGGTTAGG+GGG | - | chr3.1:70234230-70234249 | MS.gene79219:intron | 55.0% |
| ATGCTGCTGTCTCCACCAGG+GGG | + | chr3.1:70235205-70235224 | None:intergenic | 60.0% | |
| CTCTCAGCTTTGCCCTGCTC+AGG | + | chr3.1:70235111-70235130 | None:intergenic | 60.0% | |
| GCAATGCTGCTGTCTCCACC+AGG | + | chr3.1:70235208-70235227 | None:intergenic | 60.0% | |
| GCCAAGACCAAGGAGCTCAC+TGG | - | chr3.1:70233799-70233818 | MS.gene79219:CDS | 60.0% | |
| TGTCTCCACCAGGGGGTTTG+CGG | + | chr3.1:70235198-70235217 | None:intergenic | 60.0% | |
| AGAAGGCTGACGAGAGCGGG+TGG | + | chr3.1:70232433-70232452 | None:intergenic | 65.0% | |
| CGTGCAGCTGCCATGGAACG+CGG | + | chr3.1:70233859-70233878 | None:intergenic | 65.0% | |
| GTCTCCACCAGGGGGTTTGC+GGG | + | chr3.1:70235197-70235216 | None:intergenic | 65.0% | |
| !! | AAAGGTGCCCGCAAACCCCC+TGG | - | chr3.1:70235187-70235206 | MS.gene79219:CDS | 65.0% |
| AGGCTGACGAGAGCGGGTGG+CGG | + | chr3.1:70232430-70232449 | None:intergenic | 70.0% | |
| GGTGCCCGCAAACCCCCTGG+TGG | - | chr3.1:70235190-70235209 | MS.gene79219:CDS | 75.0% | |
| ! | CTGACGAGAGCGGGTGGCGG+AGG | + | chr3.1:70232427-70232446 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 70232333 | 70235237 | 70232333 | ID=MS.gene79219 |
| chr3.1 | mRNA | 70232333 | 70235237 | 70232333 | ID=MS.gene79219.t1;Parent=MS.gene79219 |
| chr3.1 | exon | 70235050 | 70235237 | 70235050 | ID=MS.gene79219.t1.exon1;Parent=MS.gene79219.t1 |
| chr3.1 | CDS | 70235050 | 70235237 | 70235050 | ID=cds.MS.gene79219.t1;Parent=MS.gene79219.t1 |
| chr3.1 | exon | 70234069 | 70234192 | 70234069 | ID=MS.gene79219.t1.exon2;Parent=MS.gene79219.t1 |
| chr3.1 | CDS | 70234069 | 70234192 | 70234069 | ID=cds.MS.gene79219.t1;Parent=MS.gene79219.t1 |
| chr3.1 | exon | 70233613 | 70233927 | 70233613 | ID=MS.gene79219.t1.exon3;Parent=MS.gene79219.t1 |
| chr3.1 | CDS | 70233613 | 70233927 | 70233613 | ID=cds.MS.gene79219.t1;Parent=MS.gene79219.t1 |
| chr3.1 | exon | 70232333 | 70232605 | 70232333 | ID=MS.gene79219.t1.exon4;Parent=MS.gene79219.t1 |
| chr3.1 | CDS | 70232333 | 70232605 | 70232333 | ID=cds.MS.gene79219.t1;Parent=MS.gene79219.t1 |
| Gene Sequence |
| Protein sequence |
