Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79368.t1 | XP_013459112.1 | 97.1 | 35 | 1 | 0 | 1 | 35 | 14 | 48 | 5.30E-07 | 65.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79368.t1 | A0A072V4P7 | 97.1 | 35 | 1 | 0 | 1 | 35 | 14 | 48 | 3.9e-07 | 65.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050082 | MS.gene79368 | 0.805023 | 1.63E-49 | -1.69E-46 |
| MS.gene053568 | MS.gene79368 | 0.820577 | 6.37E-53 | -1.69E-46 |
| MS.gene058067 | MS.gene79368 | 0.843503 | 1.35E-58 | -1.69E-46 |
| MS.gene058068 | MS.gene79368 | 0.815215 | 1.04E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79368.t1 | MTR_3g026230 | 88.000 | 250 | 19 | 1 | 1 | 250 | 14 | 252 | 1.10e-119 | 342 |
| MS.gene79368.t1 | MTR_3g026330 | 56.757 | 333 | 59 | 5 | 1 | 250 | 14 | 344 | 4.02e-82 | 249 |
| MS.gene79368.t1 | MTR_3g026290 | 55.331 | 347 | 58 | 6 | 1 | 250 | 14 | 360 | 3.33e-80 | 245 |
| MS.gene79368.t1 | MTR_3g026160 | 84.940 | 166 | 21 | 2 | 1 | 164 | 14 | 177 | 3.17e-70 | 214 |
| MS.gene79368.t1 | MTR_3g026160 | 72.549 | 153 | 34 | 4 | 101 | 250 | 37 | 184 | 7.53e-43 | 144 |
| MS.gene79368.t1 | MTR_3g026240 | 52.128 | 94 | 40 | 2 | 1 | 94 | 14 | 102 | 8.88e-19 | 80.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79368.t1 | AT5G09530 | 54.930 | 284 | 71 | 6 | 13 | 244 | 30 | 308 | 3.73e-58 | 189 |
| MS.gene79368.t1 | AT5G09530 | 61.224 | 245 | 68 | 7 | 22 | 243 | 100 | 340 | 7.98e-55 | 180 |
| MS.gene79368.t1 | AT5G09530 | 58.411 | 214 | 57 | 6 | 24 | 209 | 157 | 366 | 7.44e-42 | 147 |
| MS.gene79368.t1 | AT5G09530 | 59.341 | 91 | 29 | 2 | 22 | 106 | 282 | 370 | 3.69e-14 | 71.6 |
| MS.gene79368.t1 | AT5G09520 | 47.761 | 134 | 49 | 2 | 1 | 134 | 16 | 128 | 9.82e-23 | 90.5 |
| MS.gene79368.t1 | AT5G09520 | 58.000 | 100 | 34 | 2 | 81 | 180 | 37 | 128 | 1.95e-18 | 79.3 |
| MS.gene79368.t1 | AT5G09520 | 56.863 | 102 | 37 | 2 | 123 | 224 | 34 | 128 | 4.01e-18 | 78.6 |
| MS.gene79368.t1 | AT5G09520 | 54.808 | 104 | 37 | 2 | 139 | 242 | 37 | 130 | 4.29e-17 | 75.5 |
| MS.gene79368.t1 | AT5G09520 | 54.839 | 93 | 35 | 1 | 158 | 250 | 34 | 119 | 6.85e-14 | 67.0 |
Find 92 sgRNAs with CRISPR-Local
Find 102 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAGGTACCTTTGGTATTTC+TGG | 0.077856 | 3.1:-17195298 | None:intergenic |
| TCAGGTATCTTTGGAATTTC+TGG | 0.086251 | 3.1:-17195061 | None:intergenic |
| AGCTCAGATTTGGGGAATTC+AGG | 0.214170 | 3.1:-17195013 | None:intergenic |
| TCAGGTACCTTAGGCAATTC+TGG | 0.231204 | 3.1:-17194854 | None:intergenic |
| AACTCAGGCTTTGGCAATTC+AGG | 0.237404 | 3.1:-17195079 | None:intergenic |
| TCAGGTACTTTAGGTAATTC+TGG | 0.242157 | 3.1:-17194887 | None:intergenic |
| AACTCTAGCTTTGGTAATTC+AGG | 0.247874 | 3.1:-17195316 | None:intergenic |
| TTAGGAGTTTCGGGGAATTT+AGG | 0.250907 | 3.1:-17195412 | None:intergenic |
| GGAACATCTTTAGGAGTTTC+GGG | 0.250987 | 3.1:-17195421 | None:intergenic |
| AATTCAGGGGCAATAAATTT+AGG | 0.255231 | 3.1:-17195103 | None:intergenic |
| AGTTCAGGCTTTACCAATTC+AGG | 0.261051 | 3.1:-17195349 | None:intergenic |
| AATTCTGGCTTTGGCAATTC+AGG | 0.265103 | 3.1:-17194872 | None:intergenic |
| GACTTTAGGTAGCTCAGATT+TGG | 0.275204 | 3.1:-17195023 | None:intergenic |
| TTTGGAAGTTCAGGTACTTT+AGG | 0.279783 | 3.1:-17194896 | None:intergenic |
| ACTTTAGGTTGCTCGGGTTT+TGG | 0.285159 | 3.1:-17195127 | None:intergenic |
| TCAGGTACCTTAGGGATATC+TGG | 0.288152 | 3.1:-17195199 | None:intergenic |
| TTTGGCAATTCAGGTACTTT+AGG | 0.288403 | 3.1:-17195142 | None:intergenic |
| TTAGGTAATTCAAGAATCTT+AGG | 0.293707 | 3.1:-17194830 | None:intergenic |
| TGGAACATCTTTAGGAGTTT+CGG | 0.297377 | 3.1:-17195422 | None:intergenic |
| ATAGACAATTCGGGGACTTT+AGG | 0.311738 | 3.1:-17195037 | None:intergenic |
| AATTTAGGTAACTCGGGTTT+TGG | 0.314187 | 3.1:-17195397 | None:intergenic |
| ACTTTAGGTAGCTCAGATTT+GGG | 0.315932 | 3.1:-17195022 | None:intergenic |
| TACCTTTGGTATTTCTGGCT+TGG | 0.319635 | 3.1:-17195293 | None:intergenic |
| ACCTTTGGTATTTCTGGCTT+GGG | 0.325986 | 3.1:-17195292 | None:intergenic |
| ACCTTAGGTAGTTCATGTTT+TGG | 0.327549 | 3.1:-17195160 | None:intergenic |
| TTTGGCAATTCAGGTATCTT+TGG | 0.328199 | 3.1:-17195070 | None:intergenic |
| GTATTGGTTGGAACATCTTT+AGG | 0.328990 | 3.1:-17195430 | None:intergenic |
| TTAGGCAACTCGGGAACTTT+AGG | 0.329308 | 3.1:-17194986 | None:intergenic |
| TACCTTAGGGATATCTGGTT+TGG | 0.332667 | 3.1:-17195194 | None:intergenic |
| ACCTTAGGTAGCTCGGGTTT+TGG | 0.333524 | 3.1:-17195226 | None:intergenic |
| TTTGGTAATTCAGGTACCTT+AGG | 0.339853 | 3.1:-17195208 | None:intergenic |
| AGCTCGGGCTTTGGAAGTTC+AGG | 0.341805 | 3.1:-17194905 | None:intergenic |
| ATAGGTGGAAAATCAAGTTT+TGG | 0.353325 | 3.1:-17194791 | None:intergenic |
| ACTTTGGGAAACTCGGGTTT+TGG | 0.357337 | 3.1:-17194953 | None:intergenic |
| TTAGGCAACTCAGGAACTTT+GGG | 0.358876 | 3.1:-17194968 | None:intergenic |
| AATTTCTGGCATAGACAATT+CGG | 0.365865 | 3.1:-17195047 | None:intergenic |
| TTGGGCAACTCAGAGACTTT+TGG | 0.369313 | 3.1:-17195274 | None:intergenic |
| ACATTAACTTTAGGTAGTTC+AGG | 0.370017 | 3.1:-17195364 | None:intergenic |
| GGAAGCTCAGGCTTTGGTAT+AGG | 0.376080 | 3.1:-17194809 | None:intergenic |
| TTCAGGTACTTTAGGTTGCT+CGG | 0.381939 | 3.1:-17195134 | None:intergenic |
| AGTTCAGGGACATTAACTTT+AGG | 0.387475 | 3.1:-17195373 | None:intergenic |
| AATTTAGGTAACTCAGGCTT+TGG | 0.388803 | 3.1:-17195088 | None:intergenic |
| CTCAGGAACTTTGGGAAACT+CGG | 0.389158 | 3.1:-17194960 | None:intergenic |
| ACTTTAGGTAATTCTGGCTT+TGG | 0.389572 | 3.1:-17194881 | None:intergenic |
| TTTAGGCAACTCAGGAACTT+TGG | 0.393082 | 3.1:-17194969 | None:intergenic |
| ATCTTAGGAAGCTCAGGCTT+TGG | 0.395217 | 3.1:-17194815 | None:intergenic |
| ATTTCTGGCATAGACAATTC+GGG | 0.397522 | 3.1:-17195046 | None:intergenic |
| TTTGGTAATTCAGGTACCTT+TGG | 0.399783 | 3.1:-17195307 | None:intergenic |
| AACTTAGGTAGCTCGGGCTT+TGG | 0.403695 | 3.1:-17194914 | None:intergenic |
| ACCTTAGGGATATCTGGTTT+GGG | 0.423518 | 3.1:-17195193 | None:intergenic |
| TTTACCAATTCAGGTACCTT+AGG | 0.428581 | 3.1:-17195340 | None:intergenic |
| TTCAGATACCTTAGGTAGCT+CGG | 0.434471 | 3.1:-17195233 | None:intergenic |
| GTTACCTAAGGTACCTGAAT+TGG | 0.434651 | 3.1:+17195336 | MS.gene79368:CDS |
| ACCTTAGGTAACTCTAGCTT+TGG | 0.436884 | 3.1:-17195325 | None:intergenic |
| AGAGTATTACAATTGTTGTC+GGG | 0.438048 | 3.1:+17194732 | MS.gene79368:CDS |
| AGTTCCAACTTAAGGAGTAT+TGG | 0.438613 | 3.1:-17195446 | None:intergenic |
| TTTGGCAATTCAGGTACCTT+AGG | 0.442441 | 3.1:-17194863 | None:intergenic |
| TCAAGAATCTTAGGAAGCTC+AGG | 0.442527 | 3.1:-17194821 | None:intergenic |
| GCTCAGATTTGGGGAATTCA+GGG | 0.453735 | 3.1:-17195012 | None:intergenic |
| TTGGGGAATTCAGGGAACTT+AGG | 0.454690 | 3.1:-17195004 | None:intergenic |
| TTTGGTAATTCAGATACCTT+AGG | 0.456758 | 3.1:-17195241 | None:intergenic |
| AACATTAAACTTAGGTAGCT+CGG | 0.462347 | 3.1:-17194921 | None:intergenic |
| ACCTTAGGCAATTCTGGCTT+AGG | 0.463421 | 3.1:-17194848 | None:intergenic |
| TTGGGCAACTCAGAGACCTT+AGG | 0.486272 | 3.1:-17195175 | None:intergenic |
| GACAACAATTGTAATACTCT+TGG | 0.489157 | 3.1:-17194729 | None:intergenic |
| AAGAGTATTACAATTGTTGT+CGG | 0.490387 | 3.1:+17194731 | MS.gene79368:CDS |
| AATTCAGGAACATTAAACTT+AGG | 0.490699 | 3.1:-17194929 | None:intergenic |
| TTCGGGGAATTTAGGTAACT+CGG | 0.490939 | 3.1:-17195404 | None:intergenic |
| ACATTAAACTTAGGTAGCTC+GGG | 0.491103 | 3.1:-17194920 | None:intergenic |
| TCAGATACCTTAGGTAGCTC+GGG | 0.493144 | 3.1:-17195232 | None:intergenic |
| TTGGTAATTCAGGTACCTTA+GGG | 0.494321 | 3.1:-17195207 | None:intergenic |
| TTCAGGGAACTTAGGCAACT+CGG | 0.499436 | 3.1:-17194996 | None:intergenic |
| TCAGGTACTTTAGGTTGCTC+GGG | 0.499954 | 3.1:-17195133 | None:intergenic |
| AACAATTGTAATACTCTTGG+CGG | 0.510176 | 3.1:-17194726 | None:intergenic |
| GCAATAAATTTAGGTAACTC+AGG | 0.518136 | 3.1:-17195094 | None:intergenic |
| CCAACTTAAGGAGTATTGGT+TGG | 0.525013 | 3.1:-17195442 | None:intergenic |
| GCCAAAACATGAACTACCTA+AGG | 0.527245 | 3.1:+17195159 | MS.gene79368:CDS |
| TCAGGAACTTTGGGAAACTC+GGG | 0.528389 | 3.1:-17194959 | None:intergenic |
| AGCTCAGGCTTTGGTATAGG+TGG | 0.530445 | 3.1:-17194806 | None:intergenic |
| TCGGGGAATTTAGGTAACTC+GGG | 0.556040 | 3.1:-17195403 | None:intergenic |
| TCGGGAACTTTAGGCAACTC+AGG | 0.569614 | 3.1:-17194977 | None:intergenic |
| ACCAAAACCCGAGCTACCTA+AGG | 0.574183 | 3.1:+17195225 | MS.gene79368:CDS |
| TCAGGGAACTTAGGCAACTC+GGG | 0.582113 | 3.1:-17194995 | None:intergenic |
| ACCTAAGCCAGAATTGCCTA+AGG | 0.603337 | 3.1:+17194847 | MS.gene79368:CDS |
| GAGTATTACAATTGTTGTCG+GGG | 0.609544 | 3.1:+17194733 | MS.gene79368:CDS |
| TTTCTGGCATAGACAATTCG+GGG | 0.611978 | 3.1:-17195045 | None:intergenic |
| ACCAAAGCTAGAGTTACCTA+AGG | 0.616598 | 3.1:+17195324 | MS.gene79368:CDS |
| CTTTAGGTAGCTCAGATTTG+GGG | 0.627806 | 3.1:-17195021 | None:intergenic |
| GAACATCTTTAGGAGTTTCG+GGG | 0.649435 | 3.1:-17195420 | None:intergenic |
| GCCCAAACCAGATATCCCTA+AGG | 0.649847 | 3.1:+17195192 | MS.gene79368:CDS |
| GCCCAAGCCAGAAATACCAA+AGG | 0.675655 | 3.1:+17195291 | MS.gene79368:CDS |
| TCTAGAGTCGAACATACCTG+AGG | 0.701502 | 3.1:+17194766 | MS.gene79368:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | AATTCAGGAACATTAAACTT+AGG | - | chr3.1:17194932-17194951 | None:intergenic | 25.0% |
| ! | TTAGGTAATTCAAGAATCTT+AGG | - | chr3.1:17194833-17194852 | None:intergenic | 25.0% |
| !!! | AAGAGTATTACAATTGTTGT+CGG | + | chr3.1:17194731-17194750 | MS.gene79368:CDS | 25.0% |
| AACAATTGTAATACTCTTGG+CGG | - | chr3.1:17194729-17194748 | None:intergenic | 30.0% | |
| AACATTAAACTTAGGTAGCT+CGG | - | chr3.1:17194924-17194943 | None:intergenic | 30.0% | |
| AATTCAGGGGCAATAAATTT+AGG | - | chr3.1:17195106-17195125 | None:intergenic | 30.0% | |
| ACATTAACTTTAGGTAGTTC+AGG | - | chr3.1:17195367-17195386 | None:intergenic | 30.0% | |
| GACAACAATTGTAATACTCT+TGG | - | chr3.1:17194732-17194751 | None:intergenic | 30.0% | |
| GCAATAAATTTAGGTAACTC+AGG | - | chr3.1:17195097-17195116 | None:intergenic | 30.0% | |
| ! | AGAGTATTACAATTGTTGTC+GGG | + | chr3.1:17194732-17194751 | MS.gene79368:CDS | 30.0% |
| ! | ATAGGTGGAAAATCAAGTTT+TGG | - | chr3.1:17194794-17194813 | None:intergenic | 30.0% |
| ! | TTTGGTAATTCAGATACCTT+AGG | - | chr3.1:17195244-17195263 | None:intergenic | 30.0% |
| !! | AATTTCTGGCATAGACAATT+CGG | - | chr3.1:17195050-17195069 | None:intergenic | 30.0% |
| AATTTAGGTAACTCAGGCTT+TGG | - | chr3.1:17195091-17195110 | None:intergenic | 35.0% | |
| ACATTAAACTTAGGTAGCTC+GGG | - | chr3.1:17194923-17194942 | None:intergenic | 35.0% | |
| ACTTTAGGTAGCTCAGATTT+GGG | - | chr3.1:17195025-17195044 | None:intergenic | 35.0% | |
| AGTTCAGGGACATTAACTTT+AGG | - | chr3.1:17195376-17195395 | None:intergenic | 35.0% | |
| GAGTATTACAATTGTTGTCG+GGG | + | chr3.1:17194733-17194752 | MS.gene79368:CDS | 35.0% | |
| TCAGGTACTTTAGGTAATTC+TGG | - | chr3.1:17194890-17194909 | None:intergenic | 35.0% | |
| TTTACCAATTCAGGTACCTT+AGG | - | chr3.1:17195343-17195362 | None:intergenic | 35.0% | |
| TTTGGAAGTTCAGGTACTTT+AGG | - | chr3.1:17194899-17194918 | None:intergenic | 35.0% | |
| TTTGGCAATTCAGGTACTTT+AGG | - | chr3.1:17195145-17195164 | None:intergenic | 35.0% | |
| TTTGGCAATTCAGGTATCTT+TGG | - | chr3.1:17195073-17195092 | None:intergenic | 35.0% | |
| ! | AATTTAGGTAACTCGGGTTT+TGG | - | chr3.1:17195400-17195419 | None:intergenic | 35.0% |
| ! | ACCTTAGGTAGTTCATGTTT+TGG | - | chr3.1:17195163-17195182 | None:intergenic | 35.0% |
| ! | TGGAACATCTTTAGGAGTTT+CGG | - | chr3.1:17195425-17195444 | None:intergenic | 35.0% |
| ! | TTGGTAATTCAGGTACCTTA+GGG | - | chr3.1:17195210-17195229 | None:intergenic | 35.0% |
| ! | TTTGGTAATTCAGGTACCTT+AGG | - | chr3.1:17195211-17195230 | None:intergenic | 35.0% |
| ! | TTTGGTAATTCAGGTACCTT+TGG | - | chr3.1:17195211-17195230 | None:intergenic | 35.0% |
| !! | AACTCTAGCTTTGGTAATTC+AGG | - | chr3.1:17195319-17195338 | None:intergenic | 35.0% |
| !! | ACTTTAGGTAATTCTGGCTT+TGG | - | chr3.1:17194884-17194903 | None:intergenic | 35.0% |
| !! | ATTTCTGGCATAGACAATTC+GGG | - | chr3.1:17195049-17195068 | None:intergenic | 35.0% |
| !! | GTATTGGTTGGAACATCTTT+AGG | - | chr3.1:17195433-17195452 | None:intergenic | 35.0% |
| !! | TCAGGTATCTTTGGAATTTC+TGG | - | chr3.1:17195064-17195083 | None:intergenic | 35.0% |
| !!! | AAATCAAGTTTTGGAACCTC+AGG | - | chr3.1:17194785-17194804 | None:intergenic | 35.0% |
| !!! | AGTTCATGTTTTGGCAATTC+AGG | - | chr3.1:17195154-17195173 | None:intergenic | 35.0% |
| ACCAAAGCTAGAGTTACCTA+AGG | + | chr3.1:17195324-17195343 | MS.gene79368:CDS | 40.0% | |
| AGTTCAGGCTTTACCAATTC+AGG | - | chr3.1:17195352-17195371 | None:intergenic | 40.0% | |
| ATAGACAATTCGGGGACTTT+AGG | - | chr3.1:17195040-17195059 | None:intergenic | 40.0% | |
| CTTTAGGTAGCTCAGATTTG+GGG | - | chr3.1:17195024-17195043 | None:intergenic | 40.0% | |
| GACTTTAGGTAGCTCAGATT+TGG | - | chr3.1:17195026-17195045 | None:intergenic | 40.0% | |
| GCCAAAACATGAACTACCTA+AGG | + | chr3.1:17195159-17195178 | MS.gene79368:CDS | 40.0% | |
| TACCTTAGGGATATCTGGTT+TGG | - | chr3.1:17195197-17195216 | None:intergenic | 40.0% | |
| TCAAGAATCTTAGGAAGCTC+AGG | - | chr3.1:17194824-17194843 | None:intergenic | 40.0% | |
| TCAGGTACCTTTGGTATTTC+TGG | - | chr3.1:17195301-17195320 | None:intergenic | 40.0% | |
| TTAGGAGTTTCGGGGAATTT+AGG | - | chr3.1:17195415-17195434 | None:intergenic | 40.0% | |
| TTAGGCAACTCAGGAACTTT+GGG | - | chr3.1:17194971-17194990 | None:intergenic | 40.0% | |
| TTCAGATACCTTAGGTAGCT+CGG | - | chr3.1:17195236-17195255 | None:intergenic | 40.0% | |
| TTCGGGGAATTTAGGTAACT+CGG | - | chr3.1:17195407-17195426 | None:intergenic | 40.0% | |
| TTTAGGCAACTCAGGAACTT+TGG | - | chr3.1:17194972-17194991 | None:intergenic | 40.0% | |
| TTTGGCAATTCAGGTACCTT+AGG | - | chr3.1:17194866-17194885 | None:intergenic | 40.0% | |
| ! | ACCTTAGGGATATCTGGTTT+GGG | - | chr3.1:17195196-17195215 | None:intergenic | 40.0% |
| ! | ACCTTAGGTAACTCTAGCTT+TGG | - | chr3.1:17195328-17195347 | None:intergenic | 40.0% |
| ! | GAACATCTTTAGGAGTTTCG+GGG | - | chr3.1:17195423-17195442 | None:intergenic | 40.0% |
| ! | GGAACATCTTTAGGAGTTTC+GGG | - | chr3.1:17195424-17195443 | None:intergenic | 40.0% |
| ! | GTTACCTAAGGTACCTGAAT+TGG | + | chr3.1:17195336-17195355 | MS.gene79368:CDS | 40.0% |
| ! | TTTCTGGCATAGACAATTCG+GGG | - | chr3.1:17195048-17195067 | None:intergenic | 40.0% |
| !! | AATTCTGGCTTTGGCAATTC+AGG | - | chr3.1:17194875-17194894 | None:intergenic | 40.0% |
| !! | ACCTTTGGTATTTCTGGCTT+GGG | - | chr3.1:17195295-17195314 | None:intergenic | 40.0% |
| !! | TACCTTTGGTATTTCTGGCT+TGG | - | chr3.1:17195296-17195315 | None:intergenic | 40.0% |
| !! | TTCAGGTACTTTAGGTTGCT+CGG | - | chr3.1:17195137-17195156 | None:intergenic | 40.0% |
| ACCTAAGCCAGAATTGCCTA+AGG | + | chr3.1:17194847-17194866 | MS.gene79368:CDS | 45.0% | |
| AGCTCAGATTTGGGGAATTC+AGG | - | chr3.1:17195016-17195035 | None:intergenic | 45.0% | |
| ATCTTAGGAAGCTCAGGCTT+TGG | - | chr3.1:17194818-17194837 | None:intergenic | 45.0% | |
| GCTCAGATTTGGGGAATTCA+GGG | - | chr3.1:17195015-17195034 | None:intergenic | 45.0% | |
| TCAGATACCTTAGGTAGCTC+GGG | - | chr3.1:17195235-17195254 | None:intergenic | 45.0% | |
| TCAGGTACCTTAGGCAATTC+TGG | - | chr3.1:17194857-17194876 | None:intergenic | 45.0% | |
| TCAGGTACCTTAGGGATATC+TGG | - | chr3.1:17195202-17195221 | None:intergenic | 45.0% | |
| TCGGGGAATTTAGGTAACTC+GGG | - | chr3.1:17195406-17195425 | None:intergenic | 45.0% | |
| TTAGGCAACTCGGGAACTTT+AGG | - | chr3.1:17194989-17195008 | None:intergenic | 45.0% | |
| TTCAGGGAACTTAGGCAACT+CGG | - | chr3.1:17194999-17195018 | None:intergenic | 45.0% | |
| TTGGGGAATTCAGGGAACTT+AGG | - | chr3.1:17195007-17195026 | None:intergenic | 45.0% | |
| ! | AACTCAGGCTTTGGCAATTC+AGG | - | chr3.1:17195082-17195101 | None:intergenic | 45.0% |
| ! | CTCAGGAACTTTGGGAAACT+CGG | - | chr3.1:17194963-17194982 | None:intergenic | 45.0% |
| ! | TCAGGAACTTTGGGAAACTC+GGG | - | chr3.1:17194962-17194981 | None:intergenic | 45.0% |
| ! | TCTAGAGTCGAACATACCTG+AGG | + | chr3.1:17194766-17194785 | MS.gene79368:CDS | 45.0% |
| ! | TTGGGCAACTCAGAGACTTT+TGG | - | chr3.1:17195277-17195296 | None:intergenic | 45.0% |
| !! | AACTCGGGTTTTGGCAATTC+AGG | - | chr3.1:17194947-17194966 | None:intergenic | 45.0% |
| !! | ACCTTAGGCAATTCTGGCTT+AGG | - | chr3.1:17194851-17194870 | None:intergenic | 45.0% |
| !! | ACTTTGGGAAACTCGGGTTT+TGG | - | chr3.1:17194956-17194975 | None:intergenic | 45.0% |
| !! | ACTTTTGGTAGCTCGGGTTT+TGG | - | chr3.1:17195262-17195281 | None:intergenic | 45.0% |
| !! | AGCTCGGGTTTTGGTAATTC+AGG | - | chr3.1:17195220-17195239 | None:intergenic | 45.0% |
| !! | CTCAGAGACTTTTGGTAGCT+CGG | - | chr3.1:17195269-17195288 | None:intergenic | 45.0% |
| !! | TCAGAGACTTTTGGTAGCTC+GGG | - | chr3.1:17195268-17195287 | None:intergenic | 45.0% |
| !! | TCAGGTACTTTAGGTTGCTC+GGG | - | chr3.1:17195136-17195155 | None:intergenic | 45.0% |
| !!! | ACTTTAGGTTGCTCGGGTTT+TGG | - | chr3.1:17195130-17195149 | None:intergenic | 45.0% |
| AACTTAGGTAGCTCGGGCTT+TGG | - | chr3.1:17194917-17194936 | None:intergenic | 50.0% | |
| ACCAAAACCCGAGCTACCTA+AGG | + | chr3.1:17195225-17195244 | MS.gene79368:CDS | 50.0% | |
| GCCCAAACCAGATATCCCTA+AGG | + | chr3.1:17195192-17195211 | MS.gene79368:CDS | 50.0% | |
| GCCCAAGCCAGAAATACCAA+AGG | + | chr3.1:17195291-17195310 | MS.gene79368:CDS | 50.0% | |
| TCAGGGAACTTAGGCAACTC+GGG | - | chr3.1:17194998-17195017 | None:intergenic | 50.0% | |
| TCGGGAACTTTAGGCAACTC+AGG | - | chr3.1:17194980-17194999 | None:intergenic | 50.0% | |
| TTGGGCAACTCAGAGACCTT+AGG | - | chr3.1:17195178-17195197 | None:intergenic | 50.0% | |
| ! | ACCTTAGGTAGCTCGGGTTT+TGG | - | chr3.1:17195229-17195248 | None:intergenic | 50.0% |
| ! | AGCTCAGGCTTTGGTATAGG+TGG | - | chr3.1:17194809-17194828 | None:intergenic | 50.0% |
| ! | GGAAGCTCAGGCTTTGGTAT+AGG | - | chr3.1:17194812-17194831 | None:intergenic | 50.0% |
| !! | AACTCGGGTTTTGGCAGTTC+AGG | - | chr3.1:17195391-17195410 | None:intergenic | 50.0% |
| !! | ACTCGGGTTTTGGCAGTTCA+GGG | - | chr3.1:17195390-17195409 | None:intergenic | 50.0% |
| !! | CTCGGGTTTTGGCAATTCAG+GGG | - | chr3.1:17194945-17194964 | None:intergenic | 50.0% |
| !! | GCTCGGGTTTTGGCAATTCA+GGG | - | chr3.1:17195120-17195139 | None:intergenic | 50.0% |
| !! | TGCTCGGGTTTTGGCAATTC+AGG | - | chr3.1:17195121-17195140 | None:intergenic | 50.0% |
| !! | AGCTCGGGCTTTGGAAGTTC+AGG | - | chr3.1:17194908-17194927 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 17194707 | 17195459 | 17194707 | ID=MS.gene79368 |
| chr3.1 | mRNA | 17194707 | 17195459 | 17194707 | ID=MS.gene79368.t1;Parent=MS.gene79368 |
| chr3.1 | exon | 17194707 | 17195459 | 17194707 | ID=MS.gene79368.t1.exon1;Parent=MS.gene79368.t1 |
| chr3.1 | CDS | 17194707 | 17195459 | 17194707 | ID=cds.MS.gene79368.t1;Parent=MS.gene79368.t1 |
| Gene Sequence |
| Protein sequence |
