Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79398.t1 | AES69260.2 | 94.6 | 367 | 19 | 1 | 1 | 366 | 1 | 367 | 1.40E-192 | 682.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79398.t1 | Q9FME3 | 46.6 | 262 | 99 | 11 | 7 | 252 | 8 | 244 | 1.0e-42 | 175.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79398.t1 | G7IZC4 | 94.6 | 367 | 19 | 1 | 1 | 366 | 1 | 367 | 1.0e-192 | 682.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene79398.t1 | TF | TCP |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene055909 | MS.gene79398 | 0.8019 | 7.24E-49 | -1.69E-46 |
| MS.gene055911 | MS.gene79398 | 0.804683 | 1.92E-49 | -1.69E-46 |
| MS.gene056422 | MS.gene79398 | 0.812678 | 3.76E-51 | -1.69E-46 |
| MS.gene057537 | MS.gene79398 | 0.815006 | 1.15E-51 | -1.69E-46 |
| MS.gene058075 | MS.gene79398 | 0.81151 | 6.75E-51 | -1.69E-46 |
| MS.gene059368 | MS.gene79398 | 0.80239 | 5.74E-49 | -1.69E-46 |
| MS.gene059807 | MS.gene79398 | 0.803044 | 4.21E-49 | -1.69E-46 |
| MS.gene060372 | MS.gene79398 | 0.824541 | 7.63E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79398.t1 | MTR_3g026050 | 97.143 | 385 | 10 | 1 | 1 | 384 | 1 | 385 | 0.0 | 756 |
| MS.gene79398.t1 | MTR_4g109660 | 71.200 | 125 | 31 | 4 | 1 | 123 | 1 | 122 | 7.22e-50 | 170 |
| MS.gene79398.t1 | MTR_7g015010 | 47.917 | 192 | 76 | 7 | 37 | 225 | 39 | 209 | 1.23e-42 | 152 |
| MS.gene79398.t1 | MTR_6g015350 | 64.356 | 101 | 33 | 2 | 37 | 136 | 31 | 129 | 8.84e-36 | 134 |
| MS.gene79398.t1 | MTR_8g463380 | 58.824 | 68 | 28 | 0 | 51 | 118 | 48 | 115 | 2.99e-20 | 92.0 |
| MS.gene79398.t1 | MTR_2g090960 | 58.824 | 68 | 28 | 0 | 51 | 118 | 18 | 85 | 1.81e-19 | 88.6 |
| MS.gene79398.t1 | MTR_2g078200 | 57.353 | 68 | 29 | 0 | 51 | 118 | 14 | 81 | 5.02e-19 | 87.0 |
| MS.gene79398.t1 | MTR_4g079580 | 33.188 | 229 | 109 | 9 | 51 | 275 | 16 | 204 | 1.31e-18 | 86.3 |
| MS.gene79398.t1 | MTR_4g111935 | 33.099 | 142 | 87 | 2 | 58 | 196 | 133 | 269 | 1.13e-13 | 72.4 |
| MS.gene79398.t1 | MTR_6g017055 | 51.724 | 58 | 28 | 0 | 58 | 115 | 127 | 184 | 2.39e-12 | 68.2 |
| MS.gene79398.t1 | MTR_7g018500 | 49.123 | 57 | 29 | 0 | 59 | 115 | 122 | 178 | 2.37e-11 | 65.1 |
| MS.gene79398.t1 | MTR_1g103380 | 48.333 | 60 | 31 | 0 | 56 | 115 | 200 | 259 | 4.90e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79398.t1 | AT5G60970 | 40.774 | 336 | 138 | 15 | 40 | 356 | 46 | 339 | 1.16e-52 | 179 |
| MS.gene79398.t1 | AT5G08070 | 76.667 | 90 | 21 | 0 | 40 | 129 | 16 | 105 | 1.66e-42 | 149 |
| MS.gene79398.t1 | AT5G08070 | 76.667 | 90 | 21 | 0 | 40 | 129 | 16 | 105 | 1.66e-42 | 149 |
| MS.gene79398.t1 | AT3G02150 | 70.213 | 94 | 25 | 2 | 44 | 136 | 61 | 152 | 2.44e-39 | 142 |
| MS.gene79398.t1 | AT3G02150 | 38.019 | 313 | 114 | 12 | 24 | 327 | 43 | 284 | 3.70e-39 | 143 |
| MS.gene79398.t1 | AT1G30210 | 62.651 | 83 | 28 | 1 | 36 | 118 | 32 | 111 | 5.50e-26 | 107 |
| MS.gene79398.t1 | AT1G30210 | 62.651 | 83 | 28 | 1 | 36 | 118 | 32 | 111 | 5.50e-26 | 107 |
| MS.gene79398.t1 | AT4G18390 | 63.889 | 72 | 26 | 0 | 47 | 118 | 32 | 103 | 2.90e-25 | 105 |
| MS.gene79398.t1 | AT4G18390 | 63.889 | 72 | 26 | 0 | 47 | 118 | 32 | 103 | 2.90e-25 | 105 |
| MS.gene79398.t1 | AT1G53230 | 60.294 | 68 | 27 | 0 | 51 | 118 | 43 | 110 | 1.74e-21 | 95.5 |
| MS.gene79398.t1 | AT1G53230 | 60.294 | 68 | 27 | 0 | 51 | 118 | 43 | 110 | 1.74e-21 | 95.5 |
| MS.gene79398.t1 | AT3G15030 | 58.824 | 68 | 28 | 0 | 51 | 118 | 39 | 106 | 6.70e-21 | 94.0 |
| MS.gene79398.t1 | AT3G15030 | 58.824 | 68 | 28 | 0 | 51 | 118 | 39 | 106 | 6.70e-21 | 94.0 |
| MS.gene79398.t1 | AT3G15030 | 58.824 | 68 | 28 | 0 | 51 | 118 | 39 | 106 | 6.70e-21 | 94.0 |
| MS.gene79398.t1 | AT3G15030 | 58.824 | 68 | 28 | 0 | 51 | 118 | 39 | 106 | 6.70e-21 | 94.0 |
| MS.gene79398.t1 | AT2G31070 | 60.000 | 65 | 26 | 0 | 51 | 115 | 23 | 87 | 5.03e-19 | 87.8 |
| MS.gene79398.t1 | AT1G68800 | 49.254 | 67 | 34 | 0 | 49 | 115 | 104 | 170 | 2.86e-14 | 73.9 |
| MS.gene79398.t1 | AT1G68800 | 49.254 | 67 | 34 | 0 | 49 | 115 | 104 | 170 | 2.94e-14 | 73.9 |
| MS.gene79398.t1 | AT1G67260 | 44.286 | 70 | 39 | 0 | 46 | 115 | 76 | 145 | 6.84e-14 | 72.8 |
| MS.gene79398.t1 | AT1G67260 | 44.286 | 70 | 39 | 0 | 46 | 115 | 76 | 145 | 6.84e-14 | 72.8 |
| MS.gene79398.t1 | AT1G67260 | 44.286 | 70 | 39 | 0 | 46 | 115 | 76 | 145 | 7.89e-14 | 72.4 |
| MS.gene79398.t1 | AT3G18550 | 41.573 | 89 | 51 | 1 | 59 | 146 | 150 | 238 | 3.43e-12 | 67.8 |
| MS.gene79398.t1 | AT3G18550 | 41.573 | 89 | 51 | 1 | 59 | 146 | 150 | 238 | 3.43e-12 | 67.8 |
| MS.gene79398.t1 | AT3G18550 | 41.573 | 89 | 51 | 1 | 59 | 146 | 150 | 238 | 3.98e-12 | 67.8 |
| MS.gene79398.t1 | AT3G18550 | 50.877 | 57 | 28 | 0 | 59 | 115 | 150 | 206 | 1.21e-11 | 66.2 |
Find 71 sgRNAs with CRISPR-Local
Find 78 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTATGGCAAGGTCAAAATTT+TGG | 0.095121 | 3.1:+16909501 | MS.gene79398:CDS |
| TCAACTGGATTGTTCATAAA+AGG | 0.187602 | 3.1:-16909920 | None:intergenic |
| ATTCCAACAAATGTGGAATT+AGG | 0.207117 | 3.1:-16909470 | None:intergenic |
| ACCATTTAGCTCCAAGCTTC+TGG | 0.216080 | 3.1:+16910072 | MS.gene79398:CDS |
| CTTGATACTCTCACAATTCT+TGG | 0.226103 | 3.1:-16909134 | None:intergenic |
| CCATTTCCATTACTTTGATT+TGG | 0.264187 | 3.1:-16909803 | None:intergenic |
| AGCAAAGTTTGTACAATAAG+AGG | 0.267106 | 3.1:+16909182 | MS.gene79398:CDS |
| TGTTGGAATTCAAAATCTTA+TGG | 0.268566 | 3.1:+16909484 | MS.gene79398:CDS |
| AAATGGTTGAATTGTATTCT+TGG | 0.276038 | 3.1:-16909950 | None:intergenic |
| TTGAGTTTATGAACTGAAAA+TGG | 0.288622 | 3.1:-16909967 | None:intergenic |
| AGTTTGTCTTTATCTCAATT+TGG | 0.291167 | 3.1:+16909740 | MS.gene79398:CDS |
| CTTCAAGATAAACTTGGTTT+AGG | 0.292497 | 3.1:+16909260 | MS.gene79398:CDS |
| TGTGAATTTGCAAAAGGAAA+TGG | 0.304740 | 3.1:-16909836 | None:intergenic |
| TCCAGAAGCTTGGAGCTAAA+TGG | 0.342186 | 3.1:-16910073 | None:intergenic |
| GATCCTAATTCCACATTTGT+TGG | 0.359932 | 3.1:+16909467 | MS.gene79398:CDS |
| GTGAATTTGCAAAAGGAAAT+GGG | 0.367363 | 3.1:-16909835 | None:intergenic |
| GCAAATTCACAATTATTGTT+TGG | 0.370099 | 3.1:+16909848 | MS.gene79398:CDS |
| AACCAATCAATTACTTTACT+TGG | 0.384521 | 3.1:-16909287 | None:intergenic |
| GATCTACTTGTTGATGAGAT+TGG | 0.388449 | 3.1:-16909781 | None:intergenic |
| GTGAGAGTATCAAGAACATT+TGG | 0.394961 | 3.1:+16909143 | MS.gene79398:CDS |
| GCTTCTCATGAACTTTCTCT+TGG | 0.400555 | 3.1:+16909434 | MS.gene79398:CDS |
| AAGAGAGTACTTTAGTGAAA+AGG | 0.409808 | 3.1:+16909559 | MS.gene79398:CDS |
| AACCAAGTAAAGTAATTGAT+TGG | 0.421109 | 3.1:+16909285 | MS.gene79398:CDS |
| ATTGATCATGAAAAGGAAGT+AGG | 0.421778 | 3.1:-16909400 | None:intergenic |
| AGAAGGAGGTGATACTAGTA+TGG | 0.422169 | 3.1:+16909040 | MS.gene79398:CDS |
| GTTATTAAAATCCAGAAGCT+TGG | 0.425560 | 3.1:-16910083 | None:intergenic |
| GAGCTAAATGGTACCGGAAA+AGG | 0.430903 | 3.1:-16910061 | None:intergenic |
| TAAGAGGGTTAAGAGATAGA+AGG | 0.432238 | 3.1:+16909198 | MS.gene79398:CDS |
| GAACATTTGGAGGTAAAGAT+AGG | 0.434557 | 3.1:+16909156 | MS.gene79398:CDS |
| TCTCAATTTGGAAGTAGTAA+TGG | 0.439801 | 3.1:+16909752 | MS.gene79398:CDS |
| GTGGAATTAGGATCATATAA+AGG | 0.445075 | 3.1:-16909458 | None:intergenic |
| CCAAATCAAAGTAATGGAAA+TGG | 0.449767 | 3.1:+16909803 | MS.gene79398:CDS |
| AATAATTGTGAATTTGCAAA+AGG | 0.455659 | 3.1:-16909842 | None:intergenic |
| GGTACCGGAAAAGGTCTAAC+CGG | 0.467145 | 3.1:-16910052 | None:intergenic |
| TGAAATTGTGAAAAGCTTTG+AGG | 0.469301 | 3.1:-16909359 | None:intergenic |
| TCATATAATTGAATTGCTGT+TGG | 0.472619 | 3.1:-16909236 | None:intergenic |
| TTACTTGATTGATCATGAAA+AGG | 0.475662 | 3.1:-16909407 | None:intergenic |
| CAATAACAATAGTAACCAAC+CGG | 0.483604 | 3.1:+16910105 | MS.gene79398:CDS |
| TTGATCATGAAAAGGAAGTA+GGG | 0.484366 | 3.1:-16909399 | None:intergenic |
| GGTTAAGAGATAGAAGGATA+AGG | 0.491272 | 3.1:+16909204 | MS.gene79398:CDS |
| TCACTCATTCAATTCACCTC+CGG | 0.496606 | 3.1:+16910033 | MS.gene79398:CDS |
| CATTGTCTTGATGTACTTGA+AGG | 0.499610 | 3.1:-16909089 | None:intergenic |
| TTGAATGAGTGATGAAAAGA+TGG | 0.505850 | 3.1:-16910022 | None:intergenic |
| GTAGATCCAAATCAAAGTAA+TGG | 0.511396 | 3.1:+16909797 | MS.gene79398:CDS |
| GAAATAGATTCAAGGACTAA+AGG | 0.513931 | 3.1:+16909524 | MS.gene79398:CDS |
| AAAGATGGAATGAGAGGATG+AGG | 0.519478 | 3.1:-16910007 | None:intergenic |
| TATGATCTTCAAGATAAACT+TGG | 0.527365 | 3.1:+16909254 | MS.gene79398:CDS |
| AATGAGGAAGAAAATCAAGT+TGG | 0.535305 | 3.1:+16909599 | MS.gene79398:CDS |
| AAATTAGAATGAGTCTCCAT+AGG | 0.541479 | 3.1:-16909671 | None:intergenic |
| AGCTTGGAGCTAAATGGTAC+CGG | 0.542441 | 3.1:-16910067 | None:intergenic |
| AATTAGAATGAGTCTCCATA+GGG | 0.543229 | 3.1:-16909670 | None:intergenic |
| CTTTGAGGAAATTGAAGTGG+AGG | 0.544948 | 3.1:-16909344 | None:intergenic |
| GCAAAGTTTGTACAATAAGA+GGG | 0.549035 | 3.1:+16909183 | MS.gene79398:CDS |
| ACAAACTAGAAGCTTCTGAA+TGG | 0.549145 | 3.1:-16909724 | None:intergenic |
| AGTAGGGTTTGTGAATGAAG+AGG | 0.550409 | 3.1:-16909383 | None:intergenic |
| AAGCTTTGAGGAAATTGAAG+TGG | 0.558131 | 3.1:-16909347 | None:intergenic |
| TTTGAGGAAATTGAAGTGGA+GGG | 0.564714 | 3.1:-16909343 | None:intergenic |
| ACTTTAGTGAAAAGGATAAG+TGG | 0.567465 | 3.1:+16909567 | MS.gene79398:CDS |
| CTACTCAAATGTGATGATGA+TGG | 0.574262 | 3.1:-16909893 | None:intergenic |
| GAATTCAAAATCTTATGGCA+AGG | 0.581024 | 3.1:+16909489 | MS.gene79398:CDS |
| GGTGTAGTAGAAGAAGAAGA+AGG | 0.583801 | 3.1:-16909872 | None:intergenic |
| CGACGAGCACTATCATCATC+CGG | 0.584897 | 3.1:-16910124 | None:intergenic |
| TAAGTGGATCAAAACAAATG+AGG | 0.592313 | 3.1:+16909583 | MS.gene79398:CDS |
| AGAGTATCAAGAACATTTGG+AGG | 0.594469 | 3.1:+16909146 | MS.gene79398:CDS |
| AATTATCAAGCAAAGCAAGA+AGG | 0.601285 | 3.1:+16909023 | MS.gene79398:CDS |
| TGATGAAAAGATGGAATGAG+AGG | 0.628080 | 3.1:-16910013 | None:intergenic |
| ATGATGGCAAGTTCAAGAGA+AGG | 0.630706 | 3.1:+16908999 | MS.gene79398:CDS |
| TATCAAGCAAAGCAAGAAGG+AGG | 0.649027 | 3.1:+16909026 | MS.gene79398:CDS |
| GAGCACTATCATCATCCGGT+TGG | 0.656995 | 3.1:-16910120 | None:intergenic |
| CTTCAAGTACATCAAGACAA+TGG | 0.691220 | 3.1:+16909090 | MS.gene79398:CDS |
| ACCGGAAAAGGTCTAACCGG+AGG | 0.695953 | 3.1:-16910049 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATATTGAAAAAAAATTCA+AGG | + | chr3.1:16909064-16909083 | MS.gene79398:CDS | 10.0% |
| !! | AATAATTGTGAATTTGCAAA+AGG | - | chr3.1:16909845-16909864 | None:intergenic | 20.0% |
| ! | AAATGGTTGAATTGTATTCT+TGG | - | chr3.1:16909953-16909972 | None:intergenic | 25.0% |
| ! | AACCAAGTAAAGTAATTGAT+TGG | + | chr3.1:16909285-16909304 | MS.gene79398:CDS | 25.0% |
| ! | AACCAATCAATTACTTTACT+TGG | - | chr3.1:16909290-16909309 | None:intergenic | 25.0% |
| ! | AGTTTGTCTTTATCTCAATT+TGG | + | chr3.1:16909740-16909759 | MS.gene79398:CDS | 25.0% |
| ! | GCAAATTCACAATTATTGTT+TGG | + | chr3.1:16909848-16909867 | MS.gene79398:CDS | 25.0% |
| ! | TATGATCTTCAAGATAAACT+TGG | + | chr3.1:16909254-16909273 | MS.gene79398:CDS | 25.0% |
| ! | TCATATAATTGAATTGCTGT+TGG | - | chr3.1:16909239-16909258 | None:intergenic | 25.0% |
| ! | TGTTGGAATTCAAAATCTTA+TGG | + | chr3.1:16909484-16909503 | MS.gene79398:CDS | 25.0% |
| ! | TTACTTGATTGATCATGAAA+AGG | - | chr3.1:16909410-16909429 | None:intergenic | 25.0% |
| ! | TTGAGTTTATGAACTGAAAA+TGG | - | chr3.1:16909970-16909989 | None:intergenic | 25.0% |
| !! | ATTTTGAATTCCAACAAATG+TGG | - | chr3.1:16909480-16909499 | None:intergenic | 25.0% |
| !!! | AATTTTGGGAAATAGATTCA+AGG | + | chr3.1:16909516-16909535 | MS.gene79398:CDS | 25.0% |
| AAATTAGAATGAGTCTCCAT+AGG | - | chr3.1:16909674-16909693 | None:intergenic | 30.0% | |
| AATGAGGAAGAAAATCAAGT+TGG | + | chr3.1:16909599-16909618 | MS.gene79398:CDS | 30.0% | |
| AATTAGAATGAGTCTCCATA+GGG | - | chr3.1:16909673-16909692 | None:intergenic | 30.0% | |
| AATTATCAAGCAAAGCAAGA+AGG | + | chr3.1:16909023-16909042 | MS.gene79398:CDS | 30.0% | |
| ACTTTAGTGAAAAGGATAAG+TGG | + | chr3.1:16909567-16909586 | MS.gene79398:CDS | 30.0% | |
| AGCAAAGTTTGTACAATAAG+AGG | + | chr3.1:16909182-16909201 | MS.gene79398:CDS | 30.0% | |
| ATTCCAACAAATGTGGAATT+AGG | - | chr3.1:16909473-16909492 | None:intergenic | 30.0% | |
| ATTGATCATGAAAAGGAAGT+AGG | - | chr3.1:16909403-16909422 | None:intergenic | 30.0% | |
| CAATAACAATAGTAACCAAC+CGG | + | chr3.1:16910105-16910124 | MS.gene79398:CDS | 30.0% | |
| CCATTTCCATTACTTTGATT+TGG | - | chr3.1:16909806-16909825 | None:intergenic | 30.0% | |
| CTTCAAGATAAACTTGGTTT+AGG | + | chr3.1:16909260-16909279 | MS.gene79398:CDS | 30.0% | |
| GAAATAGATTCAAGGACTAA+AGG | + | chr3.1:16909524-16909543 | MS.gene79398:CDS | 30.0% | |
| GAATTCAAAATCTTATGGCA+AGG | + | chr3.1:16909489-16909508 | MS.gene79398:CDS | 30.0% | |
| GCAAAGTTTGTACAATAAGA+GGG | + | chr3.1:16909183-16909202 | MS.gene79398:CDS | 30.0% | |
| GTAGATCCAAATCAAAGTAA+TGG | + | chr3.1:16909797-16909816 | MS.gene79398:CDS | 30.0% | |
| GTGAATTTGCAAAAGGAAAT+GGG | - | chr3.1:16909838-16909857 | None:intergenic | 30.0% | |
| GTGGAATTAGGATCATATAA+AGG | - | chr3.1:16909461-16909480 | None:intergenic | 30.0% | |
| GTTATTAAAATCCAGAAGCT+TGG | - | chr3.1:16910086-16910105 | None:intergenic | 30.0% | |
| TAAGTGGATCAAAACAAATG+AGG | + | chr3.1:16909583-16909602 | MS.gene79398:CDS | 30.0% | |
| TCAACTGGATTGTTCATAAA+AGG | - | chr3.1:16909923-16909942 | None:intergenic | 30.0% | |
| TCTCAATTTGGAAGTAGTAA+TGG | + | chr3.1:16909752-16909771 | MS.gene79398:CDS | 30.0% | |
| TGAAATTGTGAAAAGCTTTG+AGG | - | chr3.1:16909362-16909381 | None:intergenic | 30.0% | |
| TGTGAATTTGCAAAAGGAAA+TGG | - | chr3.1:16909839-16909858 | None:intergenic | 30.0% | |
| TTGAATGAGTGATGAAAAGA+TGG | - | chr3.1:16910025-16910044 | None:intergenic | 30.0% | |
| TTGATCATGAAAAGGAAGTA+GGG | - | chr3.1:16909402-16909421 | None:intergenic | 30.0% | |
| ! | ATTCTTGGATCATTTTCAAC+TGG | - | chr3.1:16909938-16909957 | None:intergenic | 30.0% |
| ! | CCAAATCAAAGTAATGGAAA+TGG | + | chr3.1:16909803-16909822 | MS.gene79398:CDS | 30.0% |
| ! | TATGGCAAGGTCAAAATTTT+GGG | + | chr3.1:16909502-16909521 | MS.gene79398:CDS | 30.0% |
| ! | TTATGGCAAGGTCAAAATTT+TGG | + | chr3.1:16909501-16909520 | MS.gene79398:CDS | 30.0% |
| !! | AAGAGAGTACTTTAGTGAAA+AGG | + | chr3.1:16909559-16909578 | MS.gene79398:CDS | 30.0% |
| ACAAACTAGAAGCTTCTGAA+TGG | - | chr3.1:16909727-16909746 | None:intergenic | 35.0% | |
| CATTGTCTTGATGTACTTGA+AGG | - | chr3.1:16909092-16909111 | None:intergenic | 35.0% | |
| CTTCAAGTACATCAAGACAA+TGG | + | chr3.1:16909090-16909109 | MS.gene79398:CDS | 35.0% | |
| CTTGATACTCTCACAATTCT+TGG | - | chr3.1:16909137-16909156 | None:intergenic | 35.0% | |
| GAACATTTGGAGGTAAAGAT+AGG | + | chr3.1:16909156-16909175 | MS.gene79398:CDS | 35.0% | |
| GATCCTAATTCCACATTTGT+TGG | + | chr3.1:16909467-16909486 | MS.gene79398:CDS | 35.0% | |
| GGTTAAGAGATAGAAGGATA+AGG | + | chr3.1:16909204-16909223 | MS.gene79398:CDS | 35.0% | |
| TAAGAGGGTTAAGAGATAGA+AGG | + | chr3.1:16909198-16909217 | MS.gene79398:CDS | 35.0% | |
| TGATGAAAAGATGGAATGAG+AGG | - | chr3.1:16910016-16910035 | None:intergenic | 35.0% | |
| TTTGAGGAAATTGAAGTGGA+GGG | - | chr3.1:16909346-16909365 | None:intergenic | 35.0% | |
| ! | AACTCAAAAGCTTTTCCCTA+TGG | + | chr3.1:16909655-16909674 | MS.gene79398:CDS | 35.0% |
| ! | AGAGTATCAAGAACATTTGG+AGG | + | chr3.1:16909146-16909165 | MS.gene79398:CDS | 35.0% |
| ! | CTACTCAAATGTGATGATGA+TGG | - | chr3.1:16909896-16909915 | None:intergenic | 35.0% |
| ! | GATCTACTTGTTGATGAGAT+TGG | - | chr3.1:16909784-16909803 | None:intergenic | 35.0% |
| !! | AAGCTTTGAGGAAATTGAAG+TGG | - | chr3.1:16909350-16909369 | None:intergenic | 35.0% |
| !! | GTGAGAGTATCAAGAACATT+TGG | + | chr3.1:16909143-16909162 | MS.gene79398:CDS | 35.0% |
| AAAGATGGAATGAGAGGATG+AGG | - | chr3.1:16910010-16910029 | None:intergenic | 40.0% | |
| AGAAGGAGGTGATACTAGTA+TGG | + | chr3.1:16909040-16909059 | MS.gene79398:CDS | 40.0% | |
| AGTAGGGTTTGTGAATGAAG+AGG | - | chr3.1:16909386-16909405 | None:intergenic | 40.0% | |
| ATGATGGCAAGTTCAAGAGA+AGG | + | chr3.1:16908999-16909018 | MS.gene79398:CDS | 40.0% | |
| GCTTCTCATGAACTTTCTCT+TGG | + | chr3.1:16909434-16909453 | MS.gene79398:CDS | 40.0% | |
| GGTGTAGTAGAAGAAGAAGA+AGG | - | chr3.1:16909875-16909894 | None:intergenic | 40.0% | |
| TATCAAGCAAAGCAAGAAGG+AGG | + | chr3.1:16909026-16909045 | MS.gene79398:CDS | 40.0% | |
| TCACTCATTCAATTCACCTC+CGG | + | chr3.1:16910033-16910052 | MS.gene79398:CDS | 40.0% | |
| ! | CTTTGAGGAAATTGAAGTGG+AGG | - | chr3.1:16909347-16909366 | None:intergenic | 40.0% |
| AGCTTGGAGCTAAATGGTAC+CGG | - | chr3.1:16910070-16910089 | None:intergenic | 45.0% | |
| TCCAGAAGCTTGGAGCTAAA+TGG | - | chr3.1:16910076-16910095 | None:intergenic | 45.0% | |
| ! | ACCATTTAGCTCCAAGCTTC+TGG | + | chr3.1:16910072-16910091 | MS.gene79398:CDS | 45.0% |
| ! | GAGCTAAATGGTACCGGAAA+AGG | - | chr3.1:16910064-16910083 | None:intergenic | 45.0% |
| CGACGAGCACTATCATCATC+CGG | - | chr3.1:16910127-16910146 | None:intergenic | 50.0% | |
| GAGCACTATCATCATCCGGT+TGG | - | chr3.1:16910123-16910142 | None:intergenic | 50.0% | |
| ! | ACCTCCGGTTAGACCTTTTC+CGG | + | chr3.1:16910048-16910067 | MS.gene79398:CDS | 50.0% |
| ! | GGTACCGGAAAAGGTCTAAC+CGG | - | chr3.1:16910055-16910074 | None:intergenic | 50.0% |
| ACCGGAAAAGGTCTAACCGG+AGG | - | chr3.1:16910052-16910071 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 16908999 | 16910153 | 16908999 | ID=MS.gene79398 |
| chr3.1 | mRNA | 16908999 | 16910153 | 16908999 | ID=MS.gene79398.t1;Parent=MS.gene79398 |
| chr3.1 | exon | 16908999 | 16910153 | 16908999 | ID=MS.gene79398.t1.exon1;Parent=MS.gene79398.t1 |
| chr3.1 | CDS | 16908999 | 16910153 | 16908999 | ID=cds.MS.gene79398.t1;Parent=MS.gene79398.t1 |
| Gene Sequence |
| Protein sequence |
