Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80051.t1 | RHN82025.1 | 93.6 | 280 | 10 | 3 | 1 | 277 | 20 | 294 | 3.80E-139 | 504.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80051.t1 | Q43072 | 75.1 | 269 | 59 | 5 | 16 | 277 | 14 | 281 | 9.6e-107 | 387.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80051.t1 | A0A072VQG6 | 93.6 | 280 | 10 | 3 | 1 | 277 | 1 | 275 | 2.8e-139 | 504.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene80051 | MS.gene072063 | PPI |
| MS.gene80051 | MS.gene00613 | PPI |
| MS.gene58078 | MS.gene80051 | PPI |
| MS.gene80051 | MS.gene012540 | PPI |
| MS.gene047205 | MS.gene80051 | PPI |
| MS.gene002039 | MS.gene80051 | PPI |
| MS.gene80051 | MS.gene035606 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80051.t1 | MTR_1g103820 | 93.571 | 280 | 10 | 3 | 1 | 277 | 1 | 275 | 0.0 | 516 |
| MS.gene80051.t1 | MTR_8g045710 | 81.356 | 59 | 8 | 1 | 146 | 201 | 8 | 66 | 2.73e-25 | 98.6 |
| MS.gene80051.t1 | MTR_1g071390 | 41.525 | 118 | 17 | 2 | 100 | 217 | 1 | 66 | 1.67e-17 | 75.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80051.t1 | AT4G14910 | 87.440 | 207 | 25 | 1 | 71 | 277 | 67 | 272 | 5.93e-130 | 370 |
| MS.gene80051.t1 | AT3G22425 | 89.394 | 198 | 21 | 0 | 80 | 277 | 73 | 270 | 1.36e-129 | 369 |
| MS.gene80051.t1 | AT4G14910 | 84.390 | 205 | 31 | 1 | 71 | 275 | 67 | 270 | 5.38e-124 | 355 |
| MS.gene80051.t1 | AT4G14910 | 86.869 | 198 | 25 | 1 | 71 | 268 | 67 | 263 | 3.85e-123 | 353 |
| MS.gene80051.t1 | AT3G22425 | 87.970 | 133 | 16 | 0 | 80 | 212 | 73 | 205 | 1.84e-83 | 251 |
Find 78 sgRNAs with CRISPR-Local
Find 201 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTATCAGTTAAAATTAATT+TGG | 0.145809 | 1.1:-74669816 | MS.gene80051:CDS |
| AAAATTAATTTGGATGGAAA+TGG | 0.293645 | 1.1:-74669806 | MS.gene80051:CDS |
| GAACATCTCCGCCGCTGCTT+TGG | 0.321234 | 1.1:-74670012 | MS.gene80051:CDS |
| ATCATTTCAGGTGCTAGAAT+TGG | 0.340324 | 1.1:-74669869 | MS.gene80051:intron |
| GGGTTTGCTGACAATAGTTC+TGG | 0.341544 | 1.1:-74669785 | MS.gene80051:CDS |
| CAGGCTTTGCTGCAGGCTCT+TGG | 0.348810 | 1.1:-74668766 | MS.gene80051:CDS |
| GAAGTAAAACCTGAGTCAAT+TGG | 0.354938 | 1.1:+74669957 | None:intergenic |
| GAAGACGTCGCTCTTGCTAT+TGG | 0.362088 | 1.1:-74669110 | MS.gene80051:CDS |
| AACTGATACATTAGTTTCCT+TGG | 0.365756 | 1.1:+74669829 | None:intergenic |
| CATCTCCGCCGCTGCTTTGG+TGG | 0.367364 | 1.1:-74670009 | MS.gene80051:CDS |
| CCCCAAATATGCAGTTCAAA+AGG | 0.380345 | 1.1:-74666967 | MS.gene80051:intron |
| TTTGAGTGCAACTGAGTTTG+AGG | 0.380634 | 1.1:+74670164 | None:intergenic |
| AAATTAATTTGGATGGAAAT+GGG | 0.386318 | 1.1:-74669805 | MS.gene80051:CDS |
| TTCCGTCTCTGAAATCATCT+AGG | 0.399239 | 1.1:-74670130 | MS.gene80051:CDS |
| CCCAAATATGCAGTTCAAAA+GGG | 0.403925 | 1.1:-74666966 | MS.gene80051:intron |
| CAGTCATTGGTGAACACGTC+TGG | 0.411067 | 1.1:-74667958 | MS.gene80051:CDS |
| AGCCCTAGCAAATGCTTTGA+AGG | 0.411264 | 1.1:+74667650 | None:intergenic |
| TCAGTTAAAATTAATTTGGA+TGG | 0.425680 | 1.1:-74669812 | MS.gene80051:CDS |
| GTCCTTGTCCAGGATTTGTC+TGG | 0.426181 | 1.1:-74668259 | MS.gene80051:intron |
| TGCTGCAGGCTCTTGGTGAT+AGG | 0.428704 | 1.1:-74668759 | MS.gene80051:CDS |
| TCGTCTCCAGGCTTTGCTGC+AGG | 0.430773 | 1.1:-74668773 | MS.gene80051:intron |
| AAAAGTGGGGATGTTGGGTT+GGG | 0.436768 | 1.1:+74670083 | None:intergenic |
| ATCAAGCATATGATCAAGAA+AGG | 0.443469 | 1.1:+74669757 | None:intergenic |
| TCCGCCGCTGCTTTGGTGGA+TGG | 0.445471 | 1.1:-74670005 | MS.gene80051:CDS |
| TTGTCTGGCCGACCGCATCT+TGG | 0.446149 | 1.1:-74668244 | MS.gene80051:CDS |
| AAGCATTTGCTAGGGCTCTT+CGG | 0.447166 | 1.1:-74667644 | MS.gene80051:CDS |
| GATGATTTCAGAGACGGAAA+TGG | 0.447710 | 1.1:+74670134 | None:intergenic |
| AGCATTAGTTCACGTTTCTC+TGG | 0.449545 | 1.1:-74668692 | MS.gene80051:intron |
| ATTCAACGAGGTGAGATTGC+GGG | 0.450171 | 1.1:+74670043 | None:intergenic |
| AAGTAAAACCTGAGTCAATT+GGG | 0.453277 | 1.1:+74669958 | None:intergenic |
| GTGATAGGAAGGGTATTAAC+CGG | 0.453455 | 1.1:-74668744 | MS.gene80051:CDS |
| AGGAAGGGTATTAACCGGTT+TGG | 0.454615 | 1.1:-74668739 | MS.gene80051:CDS |
| AGCAGCGGCGGAGATGTTCC+TGG | 0.459063 | 1.1:+74670016 | None:intergenic |
| CTAGAATTGGAGAGGTGAAA+AGG | 0.463775 | 1.1:-74669856 | MS.gene80051:CDS |
| CAACCTTCAAAGCATTTGCT+AGG | 0.466744 | 1.1:-74667653 | MS.gene80051:CDS |
| TCCGTCTCTGAAATCATCTA+GGG | 0.497267 | 1.1:-74670129 | MS.gene80051:CDS |
| GATGTACATGTAAAGGCTAC+AGG | 0.514409 | 1.1:-74669164 | MS.gene80051:CDS |
| AAATTCCCATCATATTATTG+AGG | 0.526922 | 1.1:-74667676 | MS.gene80051:CDS |
| TCAACTTTCCCAATTGACTC+AGG | 0.527990 | 1.1:-74669966 | MS.gene80051:intron |
| GCAGGCTCTTGGTGATAGGA+AGG | 0.531782 | 1.1:-74668755 | MS.gene80051:CDS |
| AGGTTGCCTCAATAATATGA+TGG | 0.535692 | 1.1:+74667670 | None:intergenic |
| GCTGCTTTGGTGGATGGCAA+TGG | 0.538954 | 1.1:-74669999 | MS.gene80051:CDS |
| AACATACCTACTCAGAGGGT+CGG | 0.540256 | 1.1:-74668211 | MS.gene80051:CDS |
| CGACGTCTTCATTTGTGTGA+TGG | 0.540321 | 1.1:+74669123 | None:intergenic |
| ACATACCTACTCAGAGGGTC+GGG | 0.541070 | 1.1:-74668210 | MS.gene80051:CDS |
| ACTGTTCGATGTACATGTAA+AGG | 0.547472 | 1.1:-74669171 | MS.gene80051:CDS |
| TTTCAGCAACTTGCTTCACA+TGG | 0.548570 | 1.1:-74669194 | MS.gene80051:intron |
| TGAACTAATGCTTCATCAAG+TGG | 0.551680 | 1.1:+74668703 | None:intergenic |
| GCCATCCACCAAAGCAGCGG+CGG | 0.554726 | 1.1:+74670004 | None:intergenic |
| GATTCAACGAGGTGAGATTG+CGG | 0.557670 | 1.1:+74670042 | None:intergenic |
| GAGCAGAGAAGTTACCAAAC+CGG | 0.559283 | 1.1:+74668725 | None:intergenic |
| ACCCTAGATGATTTCAGAGA+CGG | 0.560120 | 1.1:+74670128 | None:intergenic |
| AACCTTCAAAGCATTTGCTA+GGG | 0.561828 | 1.1:-74667652 | MS.gene80051:CDS |
| TCAAGCATATGATCAAGAAA+GGG | 0.563364 | 1.1:+74669758 | None:intergenic |
| CCAAATATGCAGTTCAAAAG+GGG | 0.563559 | 1.1:-74666965 | MS.gene80051:intron |
| GGTTGCCTCAATAATATGAT+GGG | 0.565515 | 1.1:+74667671 | None:intergenic |
| TAGAATTGGAGAGGTGAAAA+GGG | 0.571453 | 1.1:-74669855 | MS.gene80051:CDS |
| GCAGCGGCGGAGATGTTCCT+GGG | 0.571795 | 1.1:+74670017 | None:intergenic |
| TCACCTCGTTGAATCCTCCC+AGG | 0.582803 | 1.1:-74670034 | MS.gene80051:CDS |
| CAGACGTGTTCACCAATGAC+TGG | 0.584195 | 1.1:+74667959 | None:intergenic |
| TATGACTCTTCACATTCGAC+AGG | 0.595535 | 1.1:-74667935 | MS.gene80051:intron |
| ATTGCCATCCACCAAAGCAG+CGG | 0.599331 | 1.1:+74670001 | None:intergenic |
| GGTCGGGACGTATGACACTC+AGG | 0.607780 | 1.1:-74668194 | MS.gene80051:intron |
| GAGTATGATACACGCCGCCG+TGG | 0.612129 | 1.1:-74667612 | MS.gene80051:CDS |
| TTCAGGTGCTAGAATTGGAG+AGG | 0.615450 | 1.1:-74669864 | MS.gene80051:intron |
| TAGACCTTGGTATTGTTCCA+CGG | 0.621082 | 1.1:+74667595 | None:intergenic |
| CAGGCTCTTGGTGATAGGAA+GGG | 0.631297 | 1.1:-74668754 | MS.gene80051:CDS |
| TTTAAACATACCTACTCAGA+GGG | 0.645824 | 1.1:-74668215 | MS.gene80051:CDS |
| CGTCGCTCTTGCTATTGGAA+CGG | 0.654834 | 1.1:-74669105 | MS.gene80051:intron |
| AATCATAACCAAGATGCGGT+CGG | 0.655326 | 1.1:+74668236 | None:intergenic |
| TTTAAATCATAACCAAGATG+CGG | 0.660391 | 1.1:+74668232 | None:intergenic |
| TACGTCCCGACCCTCTGAGT+AGG | 0.691428 | 1.1:+74668205 | None:intergenic |
| ATTTAAACATACCTACTCAG+AGG | 0.696859 | 1.1:-74668216 | MS.gene80051:CDS |
| AGAGGTGAAAAGGGTCACCA+AGG | 0.711904 | 1.1:-74669846 | MS.gene80051:CDS |
| GCGGCGGAGATGTTCCTGGG+AGG | 0.718744 | 1.1:+74670020 | None:intergenic |
| GCCGCCGTGGAACAATACCA+AGG | 0.723313 | 1.1:-74667599 | MS.gene80051:intron |
| ACCTTGGTATTGTTCCACGG+CGG | 0.793221 | 1.1:+74667598 | None:intergenic |
| GTTCCTGGGAGGATTCAACG+AGG | 0.848263 | 1.1:+74670031 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATATATATTTAAAAAGCA+TGG | + | chr1.1:74669392-74669411 | None:intergenic | 10.0% |
| !! | AATTGTAAATTAAAAAATCA+GGG | - | chr1.1:74670083-74670102 | MS.gene80051:CDS | 10.0% |
| !! | TAAGAAATACAAAAAAAAAA+AGG | + | chr1.1:74669570-74669589 | None:intergenic | 10.0% |
| !! | TAATTGTAAATTAAAAAATC+AGG | - | chr1.1:74670082-74670101 | MS.gene80051:CDS | 10.0% |
| !! | TTAAAGTTAAAATTATTGAA+TGG | - | chr1.1:74667872-74667891 | MS.gene80051:intron | 10.0% |
| !! | AAAAATCGAAAATCTTAAAA+GGG | + | chr1.1:74667213-74667232 | None:intergenic | 15.0% |
| !! | ATGATTGTAATTAGATTATA+TGG | - | chr1.1:74669607-74669626 | MS.gene80051:intron | 15.0% |
| !! | TGATAATCCTTAATTTATAT+TGG | + | chr1.1:74670031-74670050 | None:intergenic | 15.0% |
| !! | TGTATCAGTTAAAATTAATT+TGG | - | chr1.1:74667311-74667330 | MS.gene80051:intron | 15.0% |
| !!! | TTACTTTTTTTTATCATTTC+AGG | - | chr1.1:74667246-74667265 | MS.gene80051:intron | 15.0% |
| !! | AAAATCGAAAATCTTAAAAG+GGG | + | chr1.1:74667212-74667231 | None:intergenic | 20.0% |
| !! | AAATATGGTAAATCTGTAAA+TGG | - | chr1.1:74668552-74668571 | MS.gene80051:intron | 20.0% |
| !! | AAATGATTGATTATATGTGA+TGG | - | chr1.1:74667517-74667536 | MS.gene80051:intron | 20.0% |
| !! | AAGATTATAATCATTGTTAG+AGG | + | chr1.1:74668241-74668260 | None:intergenic | 20.0% |
| !! | AATTAGTCATTAATAGTGTT+AGG | - | chr1.1:74667846-74667865 | MS.gene80051:intron | 20.0% |
| !! | ATTAGTCATTAATAGTGTTA+GGG | - | chr1.1:74667847-74667866 | MS.gene80051:intron | 20.0% |
| !! | GAAAAATCGAAAATCTTAAA+AGG | + | chr1.1:74667214-74667233 | None:intergenic | 20.0% |
| !! | GTCTATAAAAGAATTTATCT+AGG | - | chr1.1:74667737-74667756 | MS.gene80051:intron | 20.0% |
| !! | TCAATTAGTTAAATTGCATT+TGG | + | chr1.1:74668210-74668229 | None:intergenic | 20.0% |
| !!! | AAAATTAATTTGGATGGAAA+TGG | - | chr1.1:74667321-74667340 | MS.gene80051:intron | 20.0% |
| !!! | AAATTAATTTGGATGGAAAT+GGG | - | chr1.1:74667322-74667341 | MS.gene80051:intron | 20.0% |
| !!! | ATTTTATTTAAACATGACTG+TGG | + | chr1.1:74669795-74669814 | None:intergenic | 20.0% |
| !!! | CTGTTTATTTCTTTTCTTTT+TGG | - | chr1.1:74668066-74668085 | MS.gene80051:intron | 20.0% |
| !!! | TCAGTTAAAATTAATTTGGA+TGG | - | chr1.1:74667315-74667334 | MS.gene80051:intron | 20.0% |
| !!! | TTCAAATAAGTTTTCAATCA+CGG | - | chr1.1:74669835-74669854 | MS.gene80051:CDS | 20.0% |
| !!! | TTTTATTTAAACATGACTGT+GGG | + | chr1.1:74669794-74669813 | None:intergenic | 20.0% |
| ! | AAATTCCCATCATATTATTG+AGG | - | chr1.1:74669451-74669470 | MS.gene80051:intron | 25.0% |
| ! | AAGGTTTCTGAATTGAAATT+CGG | - | chr1.1:74668758-74668777 | MS.gene80051:CDS | 25.0% |
| ! | AATGGATGATACATCATTTA+TGG | - | chr1.1:74667890-74667909 | MS.gene80051:intron | 25.0% |
| ! | AGAATGTGTATTATTCCATT+GGG | - | chr1.1:74667618-74667637 | MS.gene80051:CDS | 25.0% |
| ! | ATCCTTAATTTATATTGGTG+AGG | + | chr1.1:74670026-74670045 | None:intergenic | 25.0% |
| ! | ATGGATGATACATCATTTAT+GGG | - | chr1.1:74667891-74667910 | MS.gene80051:intron | 25.0% |
| ! | ATTTACCATATTTGTAAGCA+AGG | + | chr1.1:74668545-74668564 | None:intergenic | 25.0% |
| ! | GAGAAAGCAAAAATAATGAA+GGG | + | chr1.1:74669102-74669121 | None:intergenic | 25.0% |
| ! | GCACAAAATAGAAATTATAG+TGG | + | chr1.1:74668827-74668846 | None:intergenic | 25.0% |
| ! | GCATATTTCTTTCATATGAA+AGG | + | chr1.1:74669284-74669303 | None:intergenic | 25.0% |
| ! | GCTTATAAATGTGATTAAGA+TGG | + | chr1.1:74668796-74668815 | None:intergenic | 25.0% |
| ! | GTCTGTTTAAATATACTTCA+TGG | - | chr1.1:74668964-74668983 | MS.gene80051:intron | 25.0% |
| ! | TAGATATTAGATAATGAGCT+AGG | - | chr1.1:74667689-74667708 | MS.gene80051:CDS | 25.0% |
| ! | TCCTTAATTTATATTGGTGA+GGG | + | chr1.1:74670025-74670044 | None:intergenic | 25.0% |
| ! | TGAGAAAGCAAAAATAATGA+AGG | + | chr1.1:74669103-74669122 | None:intergenic | 25.0% |
| ! | TGCACAAATGAATTCAAAAT+TGG | + | chr1.1:74669419-74669438 | None:intergenic | 25.0% |
| ! | TTTAAATCATAACCAAGATG+CGG | + | chr1.1:74668898-74668917 | None:intergenic | 25.0% |
| !!! | GAAACTTTGAAACTATGTAA+TGG | - | chr1.1:74668580-74668599 | MS.gene80051:intron | 25.0% |
| AAGAAATATGCTGAATGCTA+TGG | - | chr1.1:74669293-74669312 | MS.gene80051:intron | 30.0% | |
| AAGATTGAAGCTTGAAAAAG+TGG | + | chr1.1:74667062-74667081 | None:intergenic | 30.0% | |
| AAGTAAAACCTGAGTCAATT+GGG | + | chr1.1:74667172-74667191 | None:intergenic | 30.0% | |
| ACCCTCACCAATATAAATTA+AGG | - | chr1.1:74670021-74670040 | MS.gene80051:CDS | 30.0% | |
| ACTATAACAAAAACTCCCAA+TGG | + | chr1.1:74667636-74667655 | None:intergenic | 30.0% | |
| AGATTGAAGCTTGAAAAAGT+GGG | + | chr1.1:74667061-74667080 | None:intergenic | 30.0% | |
| AGGAATTGAACATTCAATAC+AGG | + | chr1.1:74669713-74669732 | None:intergenic | 30.0% | |
| AGTCGCAAAATTTATTGATG+TGG | + | chr1.1:74668652-74668671 | None:intergenic | 30.0% | |
| ATCAAGCATATGATCAAGAA+AGG | + | chr1.1:74667373-74667392 | None:intergenic | 30.0% | |
| ATCAGACTGTAATGATAACT+AGG | - | chr1.1:74667787-74667806 | MS.gene80051:intron | 30.0% | |
| ATCATTTATGGGAACAAACT+TGG | - | chr1.1:74667902-74667921 | MS.gene80051:intron | 30.0% | |
| ATTTAAACATACCTACTCAG+AGG | - | chr1.1:74668911-74668930 | MS.gene80051:intron | 30.0% | |
| CAACAATACTTTAGATTGAC+TGG | + | chr1.1:74667574-74667593 | None:intergenic | 30.0% | |
| CAATGGAATAATACACATTC+TGG | + | chr1.1:74667619-74667638 | None:intergenic | 30.0% | |
| CAGAATGTGTATTATTCCAT+TGG | - | chr1.1:74667617-74667636 | MS.gene80051:CDS | 30.0% | |
| GATTATAATCTTATCACCGT+GGG | - | chr1.1:74668249-74668268 | MS.gene80051:CDS | 30.0% | |
| GCAAAAATAATGAAGGGAAA+AGG | + | chr1.1:74669096-74669115 | None:intergenic | 30.0% | |
| GTGAAGTTAAATCTTTGCAT+TGG | - | chr1.1:74668167-74668186 | MS.gene80051:intron | 30.0% | |
| TCAAGCATATGATCAAGAAA+GGG | + | chr1.1:74667372-74667391 | None:intergenic | 30.0% | |
| TCAGAAAGTTCAGTTATCAA+TGG | - | chr1.1:74668671-74668690 | MS.gene80051:intron | 30.0% | |
| TGAGGATATTGCTTAAAGAT+AGG | - | chr1.1:74668143-74668162 | MS.gene80051:intron | 30.0% | |
| TGATTATAATCTTATCACCG+TGG | - | chr1.1:74668248-74668267 | MS.gene80051:CDS | 30.0% | |
| TTCAATCCAGAGTATAAACA+AGG | + | chr1.1:74669733-74669752 | None:intergenic | 30.0% | |
| TTTAAACATACCTACTCAGA+GGG | - | chr1.1:74668912-74668931 | MS.gene80051:intron | 30.0% | |
| TTTGACTATTGAGCTTCAAA+TGG | - | chr1.1:74669015-74669034 | MS.gene80051:intron | 30.0% | |
| TTTGTCCTTGCTTACAAATA+TGG | - | chr1.1:74668537-74668556 | MS.gene80051:intron | 30.0% | |
| ! | AACTGATACATTAGTTTCCT+TGG | + | chr1.1:74667301-74667320 | None:intergenic | 30.0% |
| ! | AAGTTGATTGAAAATTCCCA+CGG | + | chr1.1:74668268-74668287 | None:intergenic | 30.0% |
| ! | AATTCATTTGTGCAGTTTTC+TGG | - | chr1.1:74669425-74669444 | MS.gene80051:intron | 30.0% |
| ! | AGATTTAAGTTAACGTGTGT+TGG | - | chr1.1:74668503-74668522 | MS.gene80051:intron | 30.0% |
| ! | ATTTAAGTTAACGTGTGTTG+GGG | - | chr1.1:74668505-74668524 | MS.gene80051:intron | 30.0% |
| ! | CGAACATGCTTCATTATTTT+AGG | - | chr1.1:74668119-74668138 | MS.gene80051:intron | 30.0% |
| ! | CTTGTTGTAATAAAGTAACG+AGG | + | chr1.1:74669676-74669695 | None:intergenic | 30.0% |
| ! | GATTTAAGTTAACGTGTGTT+GGG | - | chr1.1:74668504-74668523 | MS.gene80051:intron | 30.0% |
| ! | TCAATTCCTTGTTTATACTC+TGG | - | chr1.1:74669724-74669743 | MS.gene80051:intron | 30.0% |
| !! | AACAGAGAGTTGATGATTAT+TGG | + | chr1.1:74668481-74668500 | None:intergenic | 30.0% |
| !! | AATCATTGTTAGAGGTATTG+TGG | + | chr1.1:74668233-74668252 | None:intergenic | 30.0% |
| !! | GGTACTGATACATAGAATAT+AGG | - | chr1.1:74669213-74669232 | MS.gene80051:intron | 30.0% |
| !! | TACAAAGTGTTGTCAAATAG+TGG | + | chr1.1:74669923-74669942 | None:intergenic | 30.0% |
| !!! | GACTAATTTTCGAGTTAGAA+AGG | + | chr1.1:74667834-74667853 | None:intergenic | 30.0% |
| !!! | TGCTTCATTATTTTAGGTTG+AGG | - | chr1.1:74668125-74668144 | MS.gene80051:intron | 30.0% |
| ACTGTTCGATGTACATGTAA+AGG | - | chr1.1:74667956-74667975 | MS.gene80051:CDS | 35.0% | |
| AGGTTGCCTCAATAATATGA+TGG | + | chr1.1:74669460-74669479 | None:intergenic | 35.0% | |
| ATTTATAGGTGACCAAGTGT+CGG | + | chr1.1:74667482-74667501 | None:intergenic | 35.0% | |
| CATAGAATATAGGTCAGAGT+CGG | - | chr1.1:74669223-74669242 | MS.gene80051:intron | 35.0% | |
| CATTACAGTCTGATTCTAAC+AGG | + | chr1.1:74667781-74667800 | None:intergenic | 35.0% | |
| CCAAATATGCAGTTCAAAAG+GGG | - | chr1.1:74670162-74670181 | MS.gene80051:CDS | 35.0% | |
| CCCAAATATGCAGTTCAAAA+GGG | - | chr1.1:74670161-74670180 | MS.gene80051:CDS | 35.0% | |
| GAAGTAAAACCTGAGTCAAT+TGG | + | chr1.1:74667173-74667192 | None:intergenic | 35.0% | |
| GATTGAAGCTTGAAAAAGTG+GGG | + | chr1.1:74667060-74667079 | None:intergenic | 35.0% | |
| GGTTGCCTCAATAATATGAT+GGG | + | chr1.1:74669459-74669478 | None:intergenic | 35.0% | |
| GTTGTAATAAAGTAACGAGG+AGG | + | chr1.1:74669673-74669692 | None:intergenic | 35.0% | |
| TAATGAAGGGAAAAGGTGAA+AGG | + | chr1.1:74669089-74669108 | None:intergenic | 35.0% | |
| TAGAATTGGAGAGGTGAAAA+GGG | - | chr1.1:74667272-74667291 | MS.gene80051:intron | 35.0% | |
| TGAACTAATGCTTCATCAAG+TGG | + | chr1.1:74668427-74668446 | None:intergenic | 35.0% | |
| ! | AACCTTCAAAGCATTTGCTA+GGG | - | chr1.1:74669475-74669494 | MS.gene80051:intron | 35.0% |
| ! | AATGCTATGGATGTTTTACC+AGG | - | chr1.1:74669306-74669325 | MS.gene80051:intron | 35.0% |
| ! | ATCATTTCAGGTGCTAGAAT+TGG | - | chr1.1:74667258-74667277 | MS.gene80051:intron | 35.0% |
| ! | CCCTTTTGAACTGCATATTT+GGG | + | chr1.1:74670164-74670183 | None:intergenic | 35.0% |
| ! | CCTTTTGAACTGCATATTTG+GGG | + | chr1.1:74670163-74670182 | None:intergenic | 35.0% |
| AATCATAACCAAGATGCGGT+CGG | + | chr1.1:74668894-74668913 | None:intergenic | 40.0% | |
| ACCCTAGATGATTTCAGAGA+CGG | + | chr1.1:74667002-74667021 | None:intergenic | 40.0% | |
| AGCATTAGTTCACGTTTCTC+TGG | - | chr1.1:74668435-74668454 | MS.gene80051:intron | 40.0% | |
| ATAATGAGCTAGGTGCACAT+GGG | - | chr1.1:74667699-74667718 | MS.gene80051:intron | 40.0% | |
| ATATCCTTGTCTGTAGTTGG+TGG | - | chr1.1:74669135-74669154 | MS.gene80051:CDS | 40.0% | |
| CCCCAAATATGCAGTTCAAA+AGG | - | chr1.1:74670160-74670179 | MS.gene80051:CDS | 40.0% | |
| CGAAAATCTTAAAAGGGGCA+GGG | + | chr1.1:74667207-74667226 | None:intergenic | 40.0% | |
| CTAGAATTGGAGAGGTGAAA+AGG | - | chr1.1:74667271-74667290 | MS.gene80051:intron | 40.0% | |
| CTTGAAAAAGTGGGGATGTT+GGG | + | chr1.1:74667052-74667071 | None:intergenic | 40.0% | |
| GAAAATCTTAAAAGGGGCAG+GGG | + | chr1.1:74667206-74667225 | None:intergenic | 40.0% | |
| GATGATTTCAGAGACGGAAA+TGG | + | chr1.1:74666996-74667015 | None:intergenic | 40.0% | |
| GATGTACATGTAAAGGCTAC+AGG | - | chr1.1:74667963-74667982 | MS.gene80051:CDS | 40.0% | |
| GTTTGAGAGATACTAGACCT+TGG | + | chr1.1:74669548-74669567 | None:intergenic | 40.0% | |
| TAGACCTTGGTATTGTTCCA+CGG | + | chr1.1:74669535-74669554 | None:intergenic | 40.0% | |
| TAGATTGACTGGACAAGTGT+TGG | + | chr1.1:74667563-74667582 | None:intergenic | 40.0% | |
| TATGACTCTTCACATTCGAC+AGG | - | chr1.1:74669192-74669211 | MS.gene80051:intron | 40.0% | |
| TCGAAAATCTTAAAAGGGGC+AGG | + | chr1.1:74667208-74667227 | None:intergenic | 40.0% | |
| TCTAGCAGTACTTGTTCACA+AGG | - | chr1.1:74668739-74668758 | MS.gene80051:CDS | 40.0% | |
| TGAAGCATGTTCGACATTTC+AGG | + | chr1.1:74668112-74668131 | None:intergenic | 40.0% | |
| TGCATATCCTTGTCTGTAGT+TGG | - | chr1.1:74669132-74669151 | MS.gene80051:CDS | 40.0% | |
| TTCGTTACACTAGACAACAC+TGG | - | chr1.1:74669983-74670002 | MS.gene80051:CDS | 40.0% | |
| TTTGAGTGCAACTGAGTTTG+AGG | + | chr1.1:74666966-74666985 | None:intergenic | 40.0% | |
| ! | AAGTTTTCAATCACGGATCG+CGG | - | chr1.1:74669842-74669861 | MS.gene80051:CDS | 40.0% |
| ! | ATTTCTGTTACTTCGTCTCC+AGG | - | chr1.1:74668342-74668361 | MS.gene80051:intron | 40.0% |
| ! | CAACCTTCAAAGCATTTGCT+AGG | - | chr1.1:74669474-74669493 | MS.gene80051:intron | 40.0% |
| ! | CCCCTTTTGAACTGCATATT+TGG | + | chr1.1:74670165-74670184 | None:intergenic | 40.0% |
| ! | TCAACTTTCCCAATTGACTC+AGG | - | chr1.1:74667161-74667180 | MS.gene80051:intron | 40.0% |
| ! | TTTCAGCAACTTGCTTCACA+TGG | - | chr1.1:74667933-74667952 | MS.gene80051:intron | 40.0% |
| !! | GTGATAGGAAGGGTATTAAC+CGG | - | chr1.1:74668383-74668402 | MS.gene80051:intron | 40.0% |
| !! | TCCGTCTCTGAAATCATCTA+GGG | - | chr1.1:74666998-74667017 | MS.gene80051:intron | 40.0% |
| !! | TTCCGTCTCTGAAATCATCT+AGG | - | chr1.1:74666997-74667016 | MS.gene80051:intron | 40.0% |
| !!! | GGAGCATTTTTTCCAGTCAT+TGG | - | chr1.1:74669156-74669175 | MS.gene80051:CDS | 40.0% |
| AAAAAGTGGGGATGTTGGGT+TGG | + | chr1.1:74667048-74667067 | None:intergenic | 45.0% | |
| AAAAGTGGGGATGTTGGGTT+GGG | + | chr1.1:74667047-74667066 | None:intergenic | 45.0% | |
| AACATACCTACTCAGAGGGT+CGG | - | chr1.1:74668916-74668935 | MS.gene80051:intron | 45.0% | |
| AACGAGAAAGCCATGACACA+GGG | + | chr1.1:74668716-74668735 | None:intergenic | 45.0% | |
| ACAAATCCTGGACAAGGACA+GGG | + | chr1.1:74668867-74668886 | None:intergenic | 45.0% | |
| AGCCCTAGCAAATGCTTTGA+AGG | + | chr1.1:74669480-74669499 | None:intergenic | 45.0% | |
| ATTCAACGAGGTGAGATTGC+GGG | + | chr1.1:74667087-74667106 | None:intergenic | 45.0% | |
| CGACGTCTTCATTTGTGTGA+TGG | + | chr1.1:74668007-74668026 | None:intergenic | 45.0% | |
| CTACAGACAAGGATATGCAG+AGG | + | chr1.1:74669131-74669150 | None:intergenic | 45.0% | |
| GAGCAGAGAAGTTACCAAAC+CGG | + | chr1.1:74668405-74668424 | None:intergenic | 45.0% | |
| GATAATGAGCTAGGTGCACA+TGG | - | chr1.1:74667698-74667717 | MS.gene80051:intron | 45.0% | |
| GATTCAACGAGGTGAGATTG+CGG | + | chr1.1:74667088-74667107 | None:intergenic | 45.0% | |
| GCTTGAAAAAGTGGGGATGT+TGG | + | chr1.1:74667053-74667072 | None:intergenic | 45.0% | |
| TTCAGGTGCTAGAATTGGAG+AGG | - | chr1.1:74667263-74667282 | MS.gene80051:intron | 45.0% | |
| ! | AAGCATTTGCTAGGGCTCTT+CGG | - | chr1.1:74669483-74669502 | MS.gene80051:intron | 45.0% |
| ! | AGCATGGTCTCTGAAAACTG+AGG | + | chr1.1:74669376-74669395 | None:intergenic | 45.0% |
| !! | AATGTAGAGAGCATCTAGCC+TGG | + | chr1.1:74669327-74669346 | None:intergenic | 45.0% |
| !! | AGGAAGGGTATTAACCGGTT+TGG | - | chr1.1:74668388-74668407 | MS.gene80051:intron | 45.0% |
| !! | GGGTTTGCTGACAATAGTTC+TGG | - | chr1.1:74667342-74667361 | MS.gene80051:intron | 45.0% |
| !!! | CATTTATTTTAAATATTTAT+AGG | + | chr1.1:74667496-74667515 | None:intergenic | 5.0% |
| !!! | CTATAAATATTTAAAATAAA+TGG | - | chr1.1:74667494-74667513 | MS.gene80051:intron | 5.0% |
| ACATACCTACTCAGAGGGTC+GGG | - | chr1.1:74668917-74668936 | MS.gene80051:intron | 50.0% | |
| ACCTTGGTATTGTTCCACGG+CGG | + | chr1.1:74669532-74669551 | None:intergenic | 50.0% | |
| AGAGGTGAAAAGGGTCACCA+AGG | - | chr1.1:74667281-74667300 | MS.gene80051:intron | 50.0% | |
| ATACACCGAACACCGACACT+TGG | - | chr1.1:74667467-74667486 | MS.gene80051:intron | 50.0% | |
| ATTGCCATCCACCAAAGCAG+CGG | + | chr1.1:74667129-74667148 | None:intergenic | 50.0% | |
| CAGACGTGTTCACCAATGAC+TGG | + | chr1.1:74669171-74669190 | None:intergenic | 50.0% | |
| CAGTCATTGGTGAACACGTC+TGG | - | chr1.1:74669169-74669188 | MS.gene80051:CDS | 50.0% | |
| CTAGGTGCACATGGGATGAA+TGG | - | chr1.1:74667707-74667726 | MS.gene80051:intron | 50.0% | |
| GAACGAGAAAGCCATGACAC+AGG | + | chr1.1:74668717-74668736 | None:intergenic | 50.0% | |
| GACAAATCCTGGACAAGGAC+AGG | + | chr1.1:74668868-74668887 | None:intergenic | 50.0% | |
| GTCCTTGTCCAGGATTTGTC+TGG | - | chr1.1:74668868-74668887 | MS.gene80051:intron | 50.0% | |
| TGCTCCACCAACTACAGACA+AGG | + | chr1.1:74669142-74669161 | None:intergenic | 50.0% | |
| ! | CAGGCTCTTGGTGATAGGAA+GGG | - | chr1.1:74668373-74668392 | MS.gene80051:intron | 50.0% |
| ! | GAAGACGTCGCTCTTGCTAT+TGG | - | chr1.1:74668017-74668036 | MS.gene80051:intron | 50.0% |
| !! | CGTCGCTCTTGCTATTGGAA+CGG | - | chr1.1:74668022-74668041 | MS.gene80051:intron | 50.0% |
| !! | GACTGGACAAGTGTTGGAGT+CGG | + | chr1.1:74667557-74667576 | None:intergenic | 50.0% |
| AATCCTGGACAAGGACAGGG+AGG | + | chr1.1:74668864-74668883 | None:intergenic | 55.0% | |
| ACACAGGGCAACAAGCTCAC+TGG | + | chr1.1:74668701-74668720 | None:intergenic | 55.0% | |
| GGCCAGACAAATCCTGGACA+AGG | + | chr1.1:74668873-74668892 | None:intergenic | 55.0% | |
| GTTCCTGGGAGGATTCAACG+AGG | + | chr1.1:74667099-74667118 | None:intergenic | 55.0% | |
| TCACCTCGTTGAATCCTCCC+AGG | - | chr1.1:74667093-74667112 | MS.gene80051:intron | 55.0% | |
| TCTTAAAAGGGGCAGGGGTG+AGG | + | chr1.1:74667201-74667220 | None:intergenic | 55.0% | |
| ! | GCAGGCTCTTGGTGATAGGA+AGG | - | chr1.1:74668372-74668391 | MS.gene80051:intron | 55.0% |
| ! | GCTGCTTTGGTGGATGGCAA+TGG | - | chr1.1:74667128-74667147 | MS.gene80051:intron | 55.0% |
| ! | TGCTGCAGGCTCTTGGTGAT+AGG | - | chr1.1:74668368-74668387 | MS.gene80051:intron | 55.0% |
| !! | GAGCTTGTTGCCCTGTGTCA+TGG | - | chr1.1:74668703-74668722 | MS.gene80051:CDS | 55.0% |
| !! | GGTGACCAAGTGTCGGTGTT+CGG | + | chr1.1:74667475-74667494 | None:intergenic | 55.0% |
| CAAGAGCCTGCAGCAAAGCC+TGG | + | chr1.1:74668363-74668382 | None:intergenic | 60.0% | |
| CAGGCTTTGCTGCAGGCTCT+TGG | - | chr1.1:74668361-74668380 | MS.gene80051:intron | 60.0% | |
| GAACATCTCCGCCGCTGCTT+TGG | - | chr1.1:74667115-74667134 | MS.gene80051:intron | 60.0% | |
| GAGTATGATACACGCCGCCG+TGG | - | chr1.1:74669515-74669534 | MS.gene80051:intron | 60.0% | |
| GCCGCCGTGGAACAATACCA+AGG | - | chr1.1:74669528-74669547 | MS.gene80051:intron | 60.0% | |
| GGTCGGGACGTATGACACTC+AGG | - | chr1.1:74668933-74668952 | MS.gene80051:intron | 60.0% | |
| GTTCCTCCCTGTCCTTGTCC+AGG | - | chr1.1:74668858-74668877 | MS.gene80051:intron | 60.0% | |
| TACGTCCCGACCCTCTGAGT+AGG | + | chr1.1:74668925-74668944 | None:intergenic | 60.0% | |
| TCGTCTCCAGGCTTTGCTGC+AGG | - | chr1.1:74668354-74668373 | MS.gene80051:intron | 60.0% | |
| TTGTCTGGCCGACCGCATCT+TGG | - | chr1.1:74668883-74668902 | MS.gene80051:intron | 60.0% | |
| AGCAGCGGCGGAGATGTTCC+TGG | + | chr1.1:74667114-74667133 | None:intergenic | 65.0% | |
| GCAGCGGCGGAGATGTTCCT+GGG | + | chr1.1:74667113-74667132 | None:intergenic | 65.0% | |
| GCCATCCACCAAAGCAGCGG+CGG | + | chr1.1:74667126-74667145 | None:intergenic | 65.0% | |
| GCGGTCGGCCAGACAAATCC+TGG | + | chr1.1:74668879-74668898 | None:intergenic | 65.0% | |
| ! | CATCTCCGCCGCTGCTTTGG+TGG | - | chr1.1:74667118-74667137 | MS.gene80051:intron | 65.0% |
| ! | TCCGCCGCTGCTTTGGTGGA+TGG | - | chr1.1:74667122-74667141 | MS.gene80051:intron | 65.0% |
| GCGGCGGAGATGTTCCTGGG+AGG | + | chr1.1:74667110-74667129 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 74666948 | 74670201 | 74666948 | ID=MS.gene80051 |
| chr1.1 | mRNA | 74666948 | 74670201 | 74666948 | ID=MS.gene80051.t1;Parent=MS.gene80051 |
| chr1.1 | exon | 74669967 | 74670201 | 74669967 | ID=MS.gene80051.t1.exon1;Parent=MS.gene80051.t1 |
| chr1.1 | CDS | 74669967 | 74670201 | 74669967 | ID=cds.MS.gene80051.t1;Parent=MS.gene80051.t1 |
| chr1.1 | exon | 74669757 | 74669881 | 74669757 | ID=MS.gene80051.t1.exon2;Parent=MS.gene80051.t1 |
| chr1.1 | CDS | 74669757 | 74669881 | 74669757 | ID=cds.MS.gene80051.t1;Parent=MS.gene80051.t1 |
| chr1.1 | exon | 74669106 | 74669210 | 74669106 | ID=MS.gene80051.t1.exon3;Parent=MS.gene80051.t1 |
| chr1.1 | CDS | 74669106 | 74669210 | 74669106 | ID=cds.MS.gene80051.t1;Parent=MS.gene80051.t1 |
| chr1.1 | exon | 74668693 | 74668785 | 74668693 | ID=MS.gene80051.t1.exon4;Parent=MS.gene80051.t1 |
| chr1.1 | CDS | 74668693 | 74668785 | 74668693 | ID=cds.MS.gene80051.t1;Parent=MS.gene80051.t1 |
| chr1.1 | exon | 74668195 | 74668269 | 74668195 | ID=MS.gene80051.t1.exon5;Parent=MS.gene80051.t1 |
| chr1.1 | CDS | 74668195 | 74668269 | 74668195 | ID=cds.MS.gene80051.t1;Parent=MS.gene80051.t1 |
| chr1.1 | exon | 74667936 | 74667998 | 74667936 | ID=MS.gene80051.t1.exon6;Parent=MS.gene80051.t1 |
| chr1.1 | CDS | 74667936 | 74667998 | 74667936 | ID=cds.MS.gene80051.t1;Parent=MS.gene80051.t1 |
| chr1.1 | exon | 74667600 | 74667709 | 74667600 | ID=MS.gene80051.t1.exon7;Parent=MS.gene80051.t1 |
| chr1.1 | CDS | 74667600 | 74667709 | 74667600 | ID=cds.MS.gene80051.t1;Parent=MS.gene80051.t1 |
| chr1.1 | exon | 74666948 | 74666975 | 74666948 | ID=MS.gene80051.t1.exon8;Parent=MS.gene80051.t1 |
| chr1.1 | CDS | 74666948 | 74666975 | 74666948 | ID=cds.MS.gene80051.t1;Parent=MS.gene80051.t1 |
| Gene Sequence |
| Protein sequence |
