Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80097.t1 | XP_003614408.1 | 92.4 | 407 | 12 | 2 | 1 | 389 | 104 | 509 | 3.90E-198 | 700.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80097.t1 | G7JX25 | 92.4 | 407 | 12 | 2 | 1 | 389 | 104 | 509 | 2.8e-198 | 700.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050301 | MS.gene80097 | 0.807263 | 5.51E-50 | -1.69E-46 |
| MS.gene053917 | MS.gene80097 | 0.87134 | 7.36E-67 | -1.69E-46 |
| MS.gene055390 | MS.gene80097 | 0.801287 | 9.67E-49 | -1.69E-46 |
| MS.gene059597 | MS.gene80097 | 0.801196 | 1.01E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 74 sgRNAs with CRISPR-Local
Find 414 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACATCTCAGGGAGTTTATT+TGG | 0.155851 | 5.1:+42348646 | MS.gene80097:CDS |
| CATTTCACGACAAGATTTAA+TGG | 0.194973 | 5.1:+42348427 | MS.gene80097:CDS |
| CCTTGAATAGACTGAAAATC+TGG | 0.271321 | 5.1:-42348118 | None:intergenic |
| GAGGAGACATACAGAAGTTT+TGG | 0.278868 | 5.1:+42350297 | MS.gene80097:CDS |
| CTCAGCTTCTAGCGTGGATT+TGG | 0.326760 | 5.1:-42350611 | None:intergenic |
| AGTGGAGCAATCCTGTGTTT+TGG | 0.332072 | 5.1:-42348040 | None:intergenic |
| CCTTGAGGCAGCAAACAATT+TGG | 0.339048 | 5.1:+42350373 | MS.gene80097:CDS |
| GCCGCTTGTGCTATTGTTGA+AGG | 0.359144 | 5.1:-42350155 | None:intergenic |
| GGAATACAAATTCACCTATC+AGG | 0.364209 | 5.1:-42348332 | None:intergenic |
| AGACTGACAATGCTTCTTCT+TGG | 0.368656 | 5.1:-42347149 | None:intergenic |
| TACATATATGACTCTCTCTA+AGG | 0.376649 | 5.1:-42350521 | None:intergenic |
| GCTCCACTTGTATCCTTGTC+TGG | 0.379649 | 5.1:+42348055 | MS.gene80097:CDS |
| TGGGTGGAATCAGCTGAAAC+AGG | 0.383185 | 5.1:-42347129 | None:intergenic |
| TGGAGAACTCAGTTGGAGTA+TGG | 0.383408 | 5.1:+42348452 | MS.gene80097:CDS |
| CCATCTAGCAAACTGTCTTC+TGG | 0.383942 | 5.1:-42347879 | None:intergenic |
| GCTATTGTTGAAGGTTTGTT+TGG | 0.388614 | 5.1:-42350146 | None:intergenic |
| GACTGACAATGCTTCTTCTT+GGG | 0.391354 | 5.1:-42347148 | None:intergenic |
| CTCTTCTGTCTCAGCTTGCC+TGG | 0.404837 | 5.1:-42350252 | None:intergenic |
| GTCAGTCTTAAAGAAGTTGA+AGG | 0.433222 | 5.1:+42347164 | MS.gene80097:CDS |
| CCAGAAGACAGTTTGCTAGA+TGG | 0.436376 | 5.1:+42347879 | MS.gene80097:CDS |
| ACTCTTCCAAGATAATTTGC+TGG | 0.438432 | 5.1:-42348261 | None:intergenic |
| AGCTGTGGTGGTGGAGGAGG+AGG | 0.439710 | 5.1:+42345032 | MS.gene80097:CDS |
| TGTGAAAGAGATAACATCTC+AGG | 0.453337 | 5.1:+42348634 | MS.gene80097:CDS |
| GTTTATTTGGACATGTTGGC+AGG | 0.460200 | 5.1:+42348659 | MS.gene80097:CDS |
| CTCTTCCAAGATAATTTGCT+GGG | 0.466661 | 5.1:-42348260 | None:intergenic |
| AATTAAATTAAATTCGTCGT+TGG | 0.466853 | 5.1:+42347904 | MS.gene80097:CDS |
| CAAAGCTGTGGTGGTGGAGG+AGG | 0.470832 | 5.1:+42345029 | MS.gene80097:CDS |
| GAAGAAGCCGTTATACAAAC+TGG | 0.482672 | 5.1:+42345075 | MS.gene80097:CDS |
| CTGTGGCTCTGACAAGTGGC+AGG | 0.483399 | 5.1:+42350177 | MS.gene80097:CDS |
| AACAATAGCACAAGCGGCTG+TGG | 0.484660 | 5.1:+42350160 | MS.gene80097:CDS |
| TTGGACATGTTGGCAGGAGA+TGG | 0.489679 | 5.1:+42348665 | MS.gene80097:CDS |
| CACGACAAGATTTAATGGAA+TGG | 0.501939 | 5.1:+42348432 | MS.gene80097:CDS |
| TCTTGGAAGAGTAGTTCAAA+TGG | 0.502257 | 5.1:+42348272 | MS.gene80097:CDS |
| AATTAAATTCGTCGTTGGAA+AGG | 0.507607 | 5.1:+42347909 | MS.gene80097:CDS |
| TGGTCCCCAGCAAATTATCT+TGG | 0.509239 | 5.1:+42348255 | MS.gene80097:CDS |
| ATCAGAAACTACTGAAAAGC+CGG | 0.517346 | 5.1:+42347092 | MS.gene80097:intron |
| TTTAAAAGAACAGGCAGCAA+TGG | 0.526108 | 5.1:+42350435 | MS.gene80097:intron |
| TTGCTTACCAGTTTGTATAA+CGG | 0.527887 | 5.1:-42345082 | None:intergenic |
| GCTAAAGTCTTGGCAGAAGC+CGG | 0.530324 | 5.1:+42348230 | MS.gene80097:intron |
| GGGAGTTTATTTGGACATGT+TGG | 0.530766 | 5.1:+42348655 | MS.gene80097:CDS |
| AATGGAATGGAGAACTCAGT+TGG | 0.531803 | 5.1:+42348445 | MS.gene80097:CDS |
| AGACAAAGCTGTGGTGGTGG+AGG | 0.532022 | 5.1:+42345026 | MS.gene80097:CDS |
| TTTCTTTGGGATAATCGACC+AGG | 0.543294 | 5.1:+42348478 | MS.gene80097:CDS |
| CCAAATTGTTTGCTGCCTCA+AGG | 0.545169 | 5.1:-42350373 | None:intergenic |
| ACAGGGATTGTAATTCGTGC+CGG | 0.547208 | 5.1:-42347111 | None:intergenic |
| AAAACTTCTGTATGTCTCCT+CGG | 0.550389 | 5.1:-42350295 | None:intergenic |
| CTTGAATAGACTGAAAATCT+GGG | 0.551420 | 5.1:-42348117 | None:intergenic |
| ACCTTCAACAATAGCACAAG+CGG | 0.555134 | 5.1:+42350154 | MS.gene80097:CDS |
| TGACAATGCTTCTTCTTGGG+TGG | 0.559213 | 5.1:-42347145 | None:intergenic |
| CAACACCGTTGCAACGAATG+TGG | 0.571360 | 5.1:+42344974 | MS.gene80097:CDS |
| TCGAGACAAAGCTGTGGTGG+TGG | 0.572806 | 5.1:+42345023 | MS.gene80097:CDS |
| ACTACAATTACCACCACTCA+TGG | 0.573941 | 5.1:+42344997 | MS.gene80097:CDS |
| TTGTATAACGGCTTCTTCAG+CGG | 0.575616 | 5.1:-42345070 | None:intergenic |
| TTCTTTCTCAGCTTCTAGCG+TGG | 0.584584 | 5.1:-42350617 | None:intergenic |
| GCGGCTGTGGCTCTGACAAG+TGG | 0.587899 | 5.1:+42350173 | MS.gene80097:CDS |
| GTCTCGATCACCATGAGTGG+TGG | 0.602728 | 5.1:-42345007 | None:intergenic |
| CTAGATAGTTGAAGATGATG+TGG | 0.607544 | 5.1:+42347838 | MS.gene80097:intron |
| GTAGTCCACATTCGTTGCAA+CGG | 0.608876 | 5.1:-42344979 | None:intergenic |
| TATAACGGCTTCTTCAGCGG+TGG | 0.612339 | 5.1:-42345067 | None:intergenic |
| GAGCCAGACAAGGATACAAG+TGG | 0.613465 | 5.1:-42348058 | None:intergenic |
| CTTCCAGAAATCCAAAACAC+AGG | 0.614162 | 5.1:+42348029 | MS.gene80097:intron |
| GGGTGGAATCAGCTGAAACA+GGG | 0.621108 | 5.1:-42347128 | None:intergenic |
| TAGAAGCTGAGAATTCTGCC+AGG | 0.623746 | 5.1:+42350234 | MS.gene80097:CDS |
| TAATTTGCTGGGGACCACAC+CGG | 0.626078 | 5.1:-42348249 | None:intergenic |
| AGATCTGAGCTGCTTAGCCG+AGG | 0.628615 | 5.1:+42350278 | MS.gene80097:CDS |
| TGTGGAGAGGCTTTACCTTG+AGG | 0.631582 | 5.1:+42350358 | MS.gene80097:CDS |
| ATCACGGTTCTGATGTGGAG+AGG | 0.639626 | 5.1:+42350345 | MS.gene80097:CDS |
| GTGAAAGAGATAACATCTCA+GGG | 0.644252 | 5.1:+42348635 | MS.gene80097:CDS |
| TTTGTCTCGATCACCATGAG+TGG | 0.646744 | 5.1:-42345010 | None:intergenic |
| AGTCTTGGCAGAAGCCGGTG+TGG | 0.663623 | 5.1:+42348235 | MS.gene80097:intron |
| ATTATCTACAGAGCCAGACA+AGG | 0.678957 | 5.1:-42348068 | None:intergenic |
| TCTTCCAAGATAATTTGCTG+GGG | 0.686580 | 5.1:-42348259 | None:intergenic |
| TGATCGAGACAAAGCTGTGG+TGG | 0.689347 | 5.1:+42345020 | MS.gene80097:CDS |
| TGGTGATCGAGACAAAGCTG+TGG | 0.768511 | 5.1:+42345017 | MS.gene80097:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTAATTAAAAACTACTATT+AGG | + | chr5.1:42346047-42346066 | MS.gene80097:intron | 10.0% |
| !!! | ATTTCATTTTTTTAATTGAT+AGG | + | chr5.1:42349658-42349677 | MS.gene80097:intron | 10.0% |
| !! | TATATTATTGAATTCAATGA+GGG | + | chr5.1:42348853-42348872 | MS.gene80097:intron | 15.0% |
| !!! | AAGAATGGTTTTTATATATA+AGG | + | chr5.1:42347198-42347217 | MS.gene80097:intron | 15.0% |
| !!! | ATATTTTCTGTTTAAGATTA+AGG | + | chr5.1:42347005-42347024 | MS.gene80097:intron | 15.0% |
| !!! | TAATTTTTAAATATGCATGA+TGG | + | chr5.1:42348531-42348550 | MS.gene80097:intron | 15.0% |
| !!! | TCTTTTTTAACAATATCAAA+TGG | + | chr5.1:42349880-42349899 | MS.gene80097:intron | 15.0% |
| !!! | TGTAAACATCAAATTTTATT+CGG | + | chr5.1:42346387-42346406 | MS.gene80097:intron | 15.0% |
| !!! | TTATATTTTTCTCTAATTAG+AGG | + | chr5.1:42349362-42349381 | MS.gene80097:intron | 15.0% |
| !! | AAAAAAAGGATGAAGATATT+TGG | - | chr5.1:42347063-42347082 | None:intergenic | 20.0% |
| !! | AATTAAATTAAATTCGTCGT+TGG | + | chr5.1:42347904-42347923 | MS.gene80097:CDS | 20.0% |
| !! | AGCCTAAAAGATAAAATAAT+AGG | - | chr5.1:42350025-42350044 | None:intergenic | 20.0% |
| !! | ATTAGAGAAAAATATAAGAG+AGG | - | chr5.1:42349359-42349378 | None:intergenic | 20.0% |
| !! | ATTCAAGGTAATAAAAGTTA+TGG | + | chr5.1:42348133-42348152 | MS.gene80097:intron | 20.0% |
| !! | GTATATTATTGAATTCAATG+AGG | + | chr5.1:42348852-42348871 | MS.gene80097:intron | 20.0% |
| !! | TATTGAGATGTCATTATATT+TGG | + | chr5.1:42347328-42347347 | MS.gene80097:intron | 20.0% |
| !! | TTAAATAGCAACCATATTTA+GGG | + | chr5.1:42346149-42346168 | MS.gene80097:intron | 20.0% |
| !! | TTAGAGAAAAATATAAGAGA+GGG | - | chr5.1:42349358-42349377 | None:intergenic | 20.0% |
| !!! | AAGAATATTTCTGTTAGAAA+TGG | - | chr5.1:42348942-42348961 | None:intergenic | 20.0% |
| !!! | ACATAATTTTTTTTCCTGAT+AGG | + | chr5.1:42348318-42348337 | MS.gene80097:CDS | 20.0% |
| !!! | ACATTTAATTCTAGTTCAAA+TGG | + | chr5.1:42346426-42346445 | MS.gene80097:intron | 20.0% |
| !!! | AGAATATTTCTGTTAGAAAT+GGG | - | chr5.1:42348941-42348960 | None:intergenic | 20.0% |
| !!! | ATATTCTTTTCATTACTTTC+AGG | + | chr5.1:42345946-42345965 | MS.gene80097:intron | 20.0% |
| !!! | ATCAGTTTTTTCTTTTCTTT+TGG | + | chr5.1:42347305-42347324 | MS.gene80097:intron | 20.0% |
| !!! | ATTATTTTATCTTTTAGGCT+AGG | + | chr5.1:42350025-42350044 | MS.gene80097:intron | 20.0% |
| !!! | GTTGAATGGAATTTTTTTAT+CGG | + | chr5.1:42346493-42346512 | MS.gene80097:intron | 20.0% |
| !!! | TATTCTTTTCATTACTTTCA+GGG | + | chr5.1:42345947-42345966 | MS.gene80097:intron | 20.0% |
| !!! | TGATGATTCTAAAAACATTA+AGG | - | chr5.1:42346327-42346346 | None:intergenic | 20.0% |
| !!! | TGCCTATTATTTTATCTTTT+AGG | + | chr5.1:42350020-42350039 | MS.gene80097:intron | 20.0% |
| !!! | TTAATGTTTTTAGAATCATC+AGG | + | chr5.1:42346326-42346345 | MS.gene80097:intron | 20.0% |
| !!! | TTATTTTATCTTTTAGGCTA+GGG | + | chr5.1:42350026-42350045 | MS.gene80097:intron | 20.0% |
| !!! | TTTTATAAAGACAAGTAGTT+AGG | + | chr5.1:42348508-42348527 | MS.gene80097:intron | 20.0% |
| !!! | TTTTTTAATTGATAGGAATC+CGG | + | chr5.1:42349665-42349684 | MS.gene80097:intron | 20.0% |
| ! | AAAAACTACTATTAGGATAC+TGG | + | chr5.1:42346054-42346073 | MS.gene80097:intron | 25.0% |
| ! | AAAACTACTATTAGGATACT+GGG | + | chr5.1:42346055-42346074 | MS.gene80097:intron | 25.0% |
| ! | AAGAGAAACATCAATACATA+CGG | - | chr5.1:42348735-42348754 | None:intergenic | 25.0% |
| ! | AAGTTATTTGAGTGGTTAAT+GGG | - | chr5.1:42349218-42349237 | None:intergenic | 25.0% |
| ! | AATCAAAAAAGCAGGTTATA+TGG | + | chr5.1:42348610-42348629 | MS.gene80097:CDS | 25.0% |
| ! | AGACAATATTCACAACAAAT+AGG | - | chr5.1:42345122-42345141 | None:intergenic | 25.0% |
| ! | ATAAAACAAGCAAGAATTGA+GGG | + | chr5.1:42347529-42347548 | MS.gene80097:intron | 25.0% |
| ! | ATAGGTCTAATCTCAATAAA+GGG | + | chr5.1:42346079-42346098 | MS.gene80097:intron | 25.0% |
| ! | ATGACTAATAGAAGATAGAT+TGG | + | chr5.1:42345897-42345916 | MS.gene80097:intron | 25.0% |
| ! | ATGGAAATCTAGATGTATTA+CGG | - | chr5.1:42346247-42346266 | None:intergenic | 25.0% |
| ! | ATTAGTGAAGAGAAAAATCA+CGG | + | chr5.1:42350329-42350348 | MS.gene80097:CDS | 25.0% |
| ! | CACTATAAAACATTCAAAGA+CGG | + | chr5.1:42345980-42345999 | MS.gene80097:intron | 25.0% |
| ! | CTATAGAGAAACTATTAAGA+AGG | + | chr5.1:42346833-42346852 | MS.gene80097:intron | 25.0% |
| ! | GTTAAATAGCAACCATATTT+AGG | + | chr5.1:42346148-42346167 | MS.gene80097:intron | 25.0% |
| ! | TAAATAGCAACCATATTTAG+GGG | + | chr5.1:42346150-42346169 | MS.gene80097:intron | 25.0% |
| ! | TAATGAAGAATGATCATATG+AGG | + | chr5.1:42350075-42350094 | MS.gene80097:intron | 25.0% |
| ! | TATAGGTCTAATCTCAATAA+AGG | + | chr5.1:42346078-42346097 | MS.gene80097:intron | 25.0% |
| ! | TATCCATAACTAATTCTGTT+TGG | - | chr5.1:42349030-42349049 | None:intergenic | 25.0% |
| ! | TCAAATTACATTGTACTGAA+TGG | + | chr5.1:42348376-42348395 | MS.gene80097:intron | 25.0% |
| ! | TTAAATGTTTCGATCAAAAC+TGG | - | chr5.1:42346414-42346433 | None:intergenic | 25.0% |
| ! | TTCTTACGAACAATAACAAT+TGG | + | chr5.1:42348775-42348794 | MS.gene80097:intron | 25.0% |
| ! | TTTGACAAATCAACATCTTA+AGG | + | chr5.1:42345804-42345823 | MS.gene80097:intron | 25.0% |
| !! | ACAAAGAAACCCATTTTAAA+TGG | - | chr5.1:42348009-42348028 | None:intergenic | 25.0% |
| !! | ACCAAGATAAAAGCATAAAA+TGG | - | chr5.1:42349972-42349991 | None:intergenic | 25.0% |
| !! | ACTATATTAGGTTTTCTAAC+TGG | + | chr5.1:42349740-42349759 | MS.gene80097:intron | 25.0% |
| !! | AGTATACTCAGAAAAGTTTT+TGG | + | chr5.1:42348689-42348708 | MS.gene80097:CDS | 25.0% |
| !! | AGTTTCTCTATAGTTTTTCT+AGG | - | chr5.1:42346826-42346845 | None:intergenic | 25.0% |
| !! | CCAAGATAAAAGCATAAAAT+GGG | - | chr5.1:42349971-42349990 | None:intergenic | 25.0% |
| !! | CTATATTAGGTTTTCTAACT+GGG | + | chr5.1:42349741-42349760 | MS.gene80097:intron | 25.0% |
| !! | GTCTAACTTAGTAATTTTCT+GGG | + | chr5.1:42347613-42347632 | MS.gene80097:intron | 25.0% |
| !! | TAGCATCACTGAAATTTTTA+AGG | + | chr5.1:42345704-42345723 | MS.gene80097:intron | 25.0% |
| !! | TTGTGAATTAACTGTTTTAC+AGG | + | chr5.1:42350104-42350123 | MS.gene80097:intron | 25.0% |
| !! | TTTTGATAGAACAAACACTA+TGG | + | chr5.1:42346890-42346909 | MS.gene80097:intron | 25.0% |
| !!! | CACTGAAATTTTTAAGGTTA+AGG | + | chr5.1:42345710-42345729 | MS.gene80097:intron | 25.0% |
| !!! | TGAAATTTTTAAGGTTAAGG+AGG | + | chr5.1:42345713-42345732 | MS.gene80097:intron | 25.0% |
| !!! | TTTAATTCTAGTTCAAATGG+AGG | + | chr5.1:42346429-42346448 | MS.gene80097:intron | 25.0% |
| !!! | TTTTTAATTGATAGGAATCC+GGG | + | chr5.1:42349666-42349685 | MS.gene80097:intron | 25.0% |
| AAAATTCCATTCAACTTGAG+TGG | - | chr5.1:42346488-42346507 | None:intergenic | 30.0% | |
| AAACTGAAAATGAGAAGGAT+TGG | - | chr5.1:42345556-42345575 | None:intergenic | 30.0% | |
| AAATAAGTGTAGCAAAGATG+AGG | + | chr5.1:42346581-42346600 | MS.gene80097:intron | 30.0% | |
| AAGAAGGATCTAGAGATTAA+TGG | + | chr5.1:42346849-42346868 | MS.gene80097:intron | 30.0% | |
| AATATTCACAACAAATAGGC+TGG | - | chr5.1:42345118-42345137 | None:intergenic | 30.0% | |
| AATTAAATTCGTCGTTGGAA+AGG | + | chr5.1:42347909-42347928 | MS.gene80097:CDS | 30.0% | |
| ACACCTATAGTAGAAAAGAT+GGG | + | chr5.1:42346685-42346704 | MS.gene80097:intron | 30.0% | |
| ACATGTTGCTAAATTCAACT+CGG | + | chr5.1:42345276-42345295 | MS.gene80097:intron | 30.0% | |
| ACCCAAAATCAAGTTTCTTA+TGG | + | chr5.1:42348168-42348187 | MS.gene80097:intron | 30.0% | |
| ACTAATAGAAGATAGATTGG+AGG | + | chr5.1:42345900-42345919 | MS.gene80097:intron | 30.0% | |
| AGAAGGATCTAGAGATTAAT+GGG | + | chr5.1:42346850-42346869 | MS.gene80097:intron | 30.0% | |
| AGAGAAACATCAATACATAC+GGG | - | chr5.1:42348734-42348753 | None:intergenic | 30.0% | |
| AGTGATTGCTGAACTATATT+AGG | + | chr5.1:42349728-42349747 | MS.gene80097:intron | 30.0% | |
| ATTGATCAATCTCTGGATAA+AGG | + | chr5.1:42349064-42349083 | MS.gene80097:intron | 30.0% | |
| ATTGTTCGTAAGAAACGAAA+AGG | - | chr5.1:42348769-42348788 | None:intergenic | 30.0% | |
| CATTTCACGACAAGATTTAA+TGG | + | chr5.1:42348427-42348446 | MS.gene80097:CDS | 30.0% | |
| CCAGTACATTGAACTAAATA+AGG | - | chr5.1:42347421-42347440 | None:intergenic | 30.0% | |
| CCCAAAATCAAGTTTCTTAT+GGG | + | chr5.1:42348169-42348188 | MS.gene80097:intron | 30.0% | |
| CTTGAATAGACTGAAAATCT+GGG | - | chr5.1:42348120-42348139 | None:intergenic | 30.0% | |
| GAAGTTATTTGAGTGGTTAA+TGG | - | chr5.1:42349219-42349238 | None:intergenic | 30.0% | |
| GAATGTTATTGATCAATCTC+TGG | + | chr5.1:42349057-42349076 | MS.gene80097:intron | 30.0% | |
| GAATTGTAGGCTTGAAATTA+TGG | + | chr5.1:42347800-42347819 | MS.gene80097:intron | 30.0% | |
| GAGTGAACAATTAAACATAG+TGG | - | chr5.1:42349840-42349859 | None:intergenic | 30.0% | |
| GATAAAACAAGCAAGAATTG+AGG | + | chr5.1:42347528-42347547 | MS.gene80097:intron | 30.0% | |
| GGTAAGTTTATTCGAGAAAT+AGG | - | chr5.1:42349441-42349460 | None:intergenic | 30.0% | |
| GTACCAAACAGAATTAGTTA+TGG | + | chr5.1:42349024-42349043 | MS.gene80097:intron | 30.0% | |
| GTGTTTACTACTTTACTCTA+AGG | - | chr5.1:42345312-42345331 | None:intergenic | 30.0% | |
| TACAAGAGTTAAGACTATGT+AGG | - | chr5.1:42349269-42349288 | None:intergenic | 30.0% | |
| TACATATATGACTCTCTCTA+AGG | - | chr5.1:42350524-42350543 | None:intergenic | 30.0% | |
| TAGGTCTAATCTCAATAAAG+GGG | + | chr5.1:42346080-42346099 | MS.gene80097:intron | 30.0% | |
| TCTAAAAACATTAAGGACAG+TGG | - | chr5.1:42346320-42346339 | None:intergenic | 30.0% | |
| TGTAACATTCTGATAGAAAC+TGG | + | chr5.1:42349002-42349021 | MS.gene80097:intron | 30.0% | |
| TGTCGCATAAACATAATTCT+GGG | - | chr5.1:42349709-42349728 | None:intergenic | 30.0% | |
| TTGAATTCAATGAGGGTTTA+CGG | + | chr5.1:42348860-42348879 | MS.gene80097:intron | 30.0% | |
| TTGCTTACCAGTTTGTATAA+CGG | - | chr5.1:42345085-42345104 | None:intergenic | 30.0% | |
| TTGTGAAGTTATAAGAGCAA+TGG | - | chr5.1:42348356-42348375 | None:intergenic | 30.0% | |
| TTTATCTTGGTCTGTAAACT+GGG | + | chr5.1:42349981-42350000 | MS.gene80097:intron | 30.0% | |
| ! | AACAGTTGATACACTTTGTA+CGG | - | chr5.1:42346219-42346238 | None:intergenic | 30.0% |
| ! | AATTTAGAGCTCAAACATGT+TGG | + | chr5.1:42347971-42347990 | MS.gene80097:intron | 30.0% |
| ! | ACACTTATTTAAGTTCGTGT+TGG | - | chr5.1:42346571-42346590 | None:intergenic | 30.0% |
| ! | CCCATAAGAAACTTGATTTT+GGG | - | chr5.1:42348172-42348191 | None:intergenic | 30.0% |
| ! | CCCATTTTATGCTTTTATCT+TGG | + | chr5.1:42349968-42349987 | MS.gene80097:intron | 30.0% |
| ! | CCTTATTTAGTTCAATGTAC+TGG | + | chr5.1:42347418-42347437 | MS.gene80097:intron | 30.0% |
| ! | CGTCTAACTTAGTAATTTTC+TGG | + | chr5.1:42347612-42347631 | MS.gene80097:intron | 30.0% |
| ! | TGGAGTATGGATTTTTCTTT+GGG | + | chr5.1:42348465-42348484 | MS.gene80097:CDS | 30.0% |
| ! | TTGGAGTATGGATTTTTCTT+TGG | + | chr5.1:42348464-42348483 | MS.gene80097:CDS | 30.0% |
| ! | TTTAATACCTGTTGTTTAGC+TGG | + | chr5.1:42345188-42345207 | MS.gene80097:intron | 30.0% |
| ! | TTTTATCTTGGTCTGTAAAC+TGG | + | chr5.1:42349980-42349999 | MS.gene80097:intron | 30.0% |
| !! | AAGGTTTGTTTCTAGAAGAA+TGG | + | chr5.1:42347183-42347202 | MS.gene80097:intron | 30.0% |
| !! | AATGAAAGCATTAAAGAGAG+AGG | + | chr5.1:42346649-42346668 | MS.gene80097:intron | 30.0% |
| !! | ATGAAAGCATTAAAGAGAGA+GGG | + | chr5.1:42346650-42346669 | MS.gene80097:intron | 30.0% |
| !! | TGTAATTTGTTCTCTCACAT+TGG | + | chr5.1:42347721-42347740 | MS.gene80097:intron | 30.0% |
| !! | TGTGGTTTTACCATTCAATT+TGG | + | chr5.1:42345747-42345766 | MS.gene80097:intron | 30.0% |
| !!! | ACGCTGATTTTTAAAAGAAC+AGG | + | chr5.1:42350426-42350445 | MS.gene80097:intron | 30.0% |
| !!! | AGTTTTTGGTATGATCTCTT+AGG | + | chr5.1:42348703-42348722 | MS.gene80097:intron | 30.0% |
| !!! | TGGAATTTTTTTATCGGAAG+TGG | + | chr5.1:42346499-42346518 | MS.gene80097:intron | 30.0% |
| AAAACTTCTGTATGTCTCCT+CGG | - | chr5.1:42350298-42350317 | None:intergenic | 35.0% | |
| AACATCTCAGGGAGTTTATT+TGG | + | chr5.1:42348646-42348665 | MS.gene80097:CDS | 35.0% | |
| AACTCATGTTCTGTCTTTGA+TGG | + | chr5.1:42345443-42345462 | MS.gene80097:intron | 35.0% | |
| AACTGGGTTAATGAATGAAG+TGG | + | chr5.1:42349997-42350016 | MS.gene80097:intron | 35.0% | |
| ACACTGATGTAAAATACCCA+GGG | + | chr5.1:42345504-42345523 | MS.gene80097:intron | 35.0% | |
| ACTATTAGGATACTGGGTAT+AGG | + | chr5.1:42346061-42346080 | MS.gene80097:intron | 35.0% | |
| AGAAACATCAATACATACGG+GGG | - | chr5.1:42348732-42348751 | None:intergenic | 35.0% | |
| AGGTTTCTGTGTAGAAAATG+AGG | - | chr5.1:42345616-42345635 | None:intergenic | 35.0% | |
| AGTAAGGAGAATAGATCAGA+TGG | + | chr5.1:42346763-42346782 | MS.gene80097:intron | 35.0% | |
| ATCAGAAACTACTGAAAAGC+CGG | + | chr5.1:42347092-42347111 | MS.gene80097:intron | 35.0% | |
| ATGAGATGTAGCACTATTGA+TGG | - | chr5.1:42346266-42346285 | None:intergenic | 35.0% | |
| CACAAATTTATGCCTACCAT+AGG | - | chr5.1:42347672-42347691 | None:intergenic | 35.0% | |
| CACACCTATAGTAGAAAAGA+TGG | + | chr5.1:42346684-42346703 | MS.gene80097:intron | 35.0% | |
| CACGACAAGATTTAATGGAA+TGG | + | chr5.1:42348432-42348451 | MS.gene80097:CDS | 35.0% | |
| CAGGTATCAATCAAAAAAGC+AGG | + | chr5.1:42348602-42348621 | MS.gene80097:intron | 35.0% | |
| CCACTCAAATAACTTCCTAA+TGG | + | chr5.1:42349223-42349242 | MS.gene80097:intron | 35.0% | |
| CCATTAGGAAGTTATTTGAG+TGG | - | chr5.1:42349226-42349245 | None:intergenic | 35.0% | |
| CCTATTCAATGCTAAAGTCT+TGG | + | chr5.1:42348220-42348239 | MS.gene80097:intron | 35.0% | |
| CCTCAAACAAAGAGAGAAAT+CGG | - | chr5.1:42349777-42349796 | None:intergenic | 35.0% | |
| CCTTGAATAGACTGAAAATC+TGG | - | chr5.1:42348121-42348140 | None:intergenic | 35.0% | |
| CTAGATAGTTGAAGATGATG+TGG | + | chr5.1:42347838-42347857 | MS.gene80097:intron | 35.0% | |
| CTCAAACAAAGAGAGAAATC+GGG | - | chr5.1:42349776-42349795 | None:intergenic | 35.0% | |
| CTGATATGCAGGGTAAAAAA+AGG | - | chr5.1:42347077-42347096 | None:intergenic | 35.0% | |
| CTGTCGCATAAACATAATTC+TGG | - | chr5.1:42349710-42349729 | None:intergenic | 35.0% | |
| CTTCAATGCAAGTTTGAATC+TGG | - | chr5.1:42345678-42345697 | None:intergenic | 35.0% | |
| CTTGAGAATTTCTGCATGAA+GGG | + | chr5.1:42347636-42347655 | MS.gene80097:intron | 35.0% | |
| GACAAATCAACATCTTAAGG+TGG | + | chr5.1:42345807-42345826 | MS.gene80097:intron | 35.0% | |
| GAGAAACATCAATACATACG+GGG | - | chr5.1:42348733-42348752 | None:intergenic | 35.0% | |
| GAGTGAAACTGAAAATGAGA+AGG | - | chr5.1:42345561-42345580 | None:intergenic | 35.0% | |
| GCAAGTTTGAATCTGGTAAT+GGG | - | chr5.1:42345671-42345690 | None:intergenic | 35.0% | |
| GGAATACAAATTCACCTATC+AGG | - | chr5.1:42348335-42348354 | None:intergenic | 35.0% | |
| GGAGTCATTTGTTTCGATAT+TGG | + | chr5.1:42347459-42347478 | MS.gene80097:intron | 35.0% | |
| GGTTTCTGTGTAGAAAATGA+GGG | - | chr5.1:42345615-42345634 | None:intergenic | 35.0% | |
| GTCAGTCTTAAAGAAGTTGA+AGG | + | chr5.1:42347164-42347183 | MS.gene80097:CDS | 35.0% | |
| GTGAAAGAGATAACATCTCA+GGG | + | chr5.1:42348635-42348654 | MS.gene80097:CDS | 35.0% | |
| GTGTTTACTACCTTACTCTA+AGG | - | chr5.1:42345164-42345183 | None:intergenic | 35.0% | |
| GTTTCTGTGTAGAAAATGAG+GGG | - | chr5.1:42345614-42345633 | None:intergenic | 35.0% | |
| TAGACAGACTCTCCAAAAAA+TGG | - | chr5.1:42345386-42345405 | None:intergenic | 35.0% | |
| TATTTGAGTGGTTAATGGGA+GGG | - | chr5.1:42349214-42349233 | None:intergenic | 35.0% | |
| TCAAACTGATGCAACACATT+AGG | - | chr5.1:42345789-42345808 | None:intergenic | 35.0% | |
| TCAGTAGTTTCTGATATGCA+GGG | - | chr5.1:42347087-42347106 | None:intergenic | 35.0% | |
| TCTTGGAAGAGTAGTTCAAA+TGG | + | chr5.1:42348272-42348291 | MS.gene80097:CDS | 35.0% | |
| TCTTTATAAAACCACGTACC+TGG | - | chr5.1:42348499-42348518 | None:intergenic | 35.0% | |
| TGACAGCTATCAAGATTTCA+CGG | + | chr5.1:42345840-42345859 | MS.gene80097:intron | 35.0% | |
| TGCAAGTTTGAATCTGGTAA+TGG | - | chr5.1:42345672-42345691 | None:intergenic | 35.0% | |
| TGTGAAAGAGATAACATCTC+AGG | + | chr5.1:42348634-42348653 | MS.gene80097:CDS | 35.0% | |
| TTACCATTCAATTTGGTCCT+TGG | + | chr5.1:42345754-42345773 | MS.gene80097:intron | 35.0% | |
| TTATTTGAGTGGTTAATGGG+AGG | - | chr5.1:42349215-42349234 | None:intergenic | 35.0% | |
| TTCAGTAGTTTCTGATATGC+AGG | - | chr5.1:42347088-42347107 | None:intergenic | 35.0% | |
| TTTAAAAGAACAGGCAGCAA+TGG | + | chr5.1:42350435-42350454 | MS.gene80097:intron | 35.0% | |
| ! | AAGGAGGATGAACAATTTTG+TGG | + | chr5.1:42345729-42345748 | MS.gene80097:intron | 35.0% |
| ! | ACTCTTCCAAGATAATTTGC+TGG | - | chr5.1:42348264-42348283 | None:intergenic | 35.0% |
| ! | AGGAGACATACAGAAGTTTT+GGG | + | chr5.1:42350298-42350317 | MS.gene80097:CDS | 35.0% |
| ! | CAAGTTTGAATCTGGTAATG+GGG | - | chr5.1:42345670-42345689 | None:intergenic | 35.0% |
| ! | CCAAGACTTTAGCATTGAAT+AGG | - | chr5.1:42348223-42348242 | None:intergenic | 35.0% |
| ! | CCAGATTTTCAGTCTATTCA+AGG | + | chr5.1:42348118-42348137 | MS.gene80097:CDS | 35.0% |
| ! | CGATTTCTCTCTTTGTTTGA+GGG | + | chr5.1:42349775-42349794 | MS.gene80097:intron | 35.0% |
| ! | CTACCCATCTTTTCTACTAT+AGG | - | chr5.1:42346691-42346710 | None:intergenic | 35.0% |
| ! | GAGTTACGATTTTCACTTCA+TGG | - | chr5.1:42349591-42349610 | None:intergenic | 35.0% |
| ! | GCCCATAAGAAACTTGATTT+TGG | - | chr5.1:42348173-42348192 | None:intergenic | 35.0% |
| ! | GCTATTGTTGAAGGTTTGTT+TGG | - | chr5.1:42350149-42350168 | None:intergenic | 35.0% |
| ! | TTTTATCGGAAGTGGTAAGA+CGG | + | chr5.1:42346507-42346526 | MS.gene80097:intron | 35.0% |
| !! | AAAGTACCACTCAAGTTGAA+TGG | + | chr5.1:42346479-42346498 | MS.gene80097:intron | 35.0% |
| !! | AAGTTTGAATCTGGTAATGG+GGG | - | chr5.1:42345669-42345688 | None:intergenic | 35.0% |
| !! | AATCCTGTGTTTTGGATTTC+TGG | - | chr5.1:42348035-42348054 | None:intergenic | 35.0% |
| !! | CTCTTCCAAGATAATTTGCT+GGG | - | chr5.1:42348263-42348282 | None:intergenic | 35.0% |
| !! | GCAGAAAGTATTAGAAAGAG+TGG | + | chr5.1:42349130-42349149 | MS.gene80097:intron | 35.0% |
| !! | GCATAAATTTGTGCTGCTTA+GGG | + | chr5.1:42347679-42347698 | MS.gene80097:intron | 35.0% |
| !! | TCTTCCAAGATAATTTGCTG+GGG | - | chr5.1:42348262-42348281 | None:intergenic | 35.0% |
| !!! | CTGCTTTTTTGATTGATACC+TGG | - | chr5.1:42348604-42348623 | None:intergenic | 35.0% |
| !!! | CTGTCTGGTAAACCATTTTT+TGG | + | chr5.1:42345371-42345390 | MS.gene80097:intron | 35.0% |
| AAACTGGTAAGCAACCACAA+TGG | + | chr5.1:42345091-42345110 | MS.gene80097:intron | 40.0% | |
| AAATCACTAGTGGTAGGGTA+GGG | + | chr5.1:42346795-42346814 | MS.gene80097:intron | 40.0% | |
| AAGCATTAAAGAGAGAGGGT+TGG | + | chr5.1:42346654-42346673 | MS.gene80097:intron | 40.0% | |
| AAGGAGAATAGATCAGATGG+AGG | + | chr5.1:42346766-42346785 | MS.gene80097:intron | 40.0% | |
| AATGGAATGGAGAACTCAGT+TGG | + | chr5.1:42348445-42348464 | MS.gene80097:CDS | 40.0% | |
| AATTCAATGAGGGTTTACGG+AGG | + | chr5.1:42348863-42348882 | MS.gene80097:intron | 40.0% | |
| ACCTGGACTGTAAAAAAGTC+AGG | - | chr5.1:42348587-42348606 | None:intergenic | 40.0% | |
| ACCTTCAACAATAGCACAAG+CGG | + | chr5.1:42350154-42350173 | MS.gene80097:CDS | 40.0% | |
| ACTACAATTACCACCACTCA+TGG | + | chr5.1:42344997-42345016 | MS.gene80097:CDS | 40.0% | |
| AGACTGACAATGCTTCTTCT+TGG | - | chr5.1:42347152-42347171 | None:intergenic | 40.0% | |
| AGCATTAAAGAGAGAGGGTT+GGG | + | chr5.1:42346655-42346674 | MS.gene80097:intron | 40.0% | |
| AGCGATTCGCAATACTTGAA+GGG | - | chr5.1:42345346-42345365 | None:intergenic | 40.0% | |
| AGGAGAATAGATCAGATGGA+GGG | + | chr5.1:42346767-42346786 | MS.gene80097:intron | 40.0% | |
| AGGGTTATTCCTATGCATCT+AGG | + | chr5.1:42350045-42350064 | MS.gene80097:intron | 40.0% | |
| ATAGCAACCATATTTAGGGG+AGG | + | chr5.1:42346153-42346172 | MS.gene80097:intron | 40.0% | |
| ATGCCAAGGACCAAATTGAA+TGG | - | chr5.1:42345760-42345779 | None:intergenic | 40.0% | |
| ATTATCTACAGAGCCAGACA+AGG | - | chr5.1:42348071-42348090 | None:intergenic | 40.0% | |
| ATTCAAAGATCGCAGGATTG+TGG | - | chr5.1:42349520-42349539 | None:intergenic | 40.0% | |
| CAAAGATGAGGATGTTGTGT+TGG | + | chr5.1:42346593-42346612 | MS.gene80097:intron | 40.0% | |
| CAAGCAAGAATTGAGGGAAA+AGG | + | chr5.1:42347535-42347554 | MS.gene80097:intron | 40.0% | |
| CACACTGATGTAAAATACCC+AGG | + | chr5.1:42345503-42345522 | MS.gene80097:intron | 40.0% | |
| CACGTTAGTGACTCAAACAA+AGG | + | chr5.1:42345530-42345549 | MS.gene80097:intron | 40.0% | |
| CAGACAAGTAGTATTCACCT+AGG | + | chr5.1:42347221-42347240 | MS.gene80097:intron | 40.0% | |
| CCAATTCTTGAAGAACCCAT+TGG | - | chr5.1:42349177-42349196 | None:intergenic | 40.0% | |
| CTCCTTACTATAGAATCCAC+AGG | - | chr5.1:42346752-42346771 | None:intergenic | 40.0% | |
| CTTAGTTGCTTAACTCTGAG+AGG | + | chr5.1:42345469-42345488 | MS.gene80097:intron | 40.0% | |
| CTTCCAGAAATCCAAAACAC+AGG | + | chr5.1:42348029-42348048 | MS.gene80097:intron | 40.0% | |
| GAAACTAGACTTAGGTGGTT+TGG | + | chr5.1:42346710-42346729 | MS.gene80097:intron | 40.0% | |
| GAAGAAGCCGTTATACAAAC+TGG | + | chr5.1:42345075-42345094 | MS.gene80097:CDS | 40.0% | |
| GAATAAACTTACCACACCCT+GGG | + | chr5.1:42349448-42349467 | MS.gene80097:intron | 40.0% | |
| GACCTGTGGATTCTATAGTA+AGG | + | chr5.1:42346747-42346766 | MS.gene80097:intron | 40.0% | |
| GACTGACAATGCTTCTTCTT+GGG | - | chr5.1:42347151-42347170 | None:intergenic | 40.0% | |
| GAGTCAAATCACTAGTGGTA+GGG | + | chr5.1:42346790-42346809 | MS.gene80097:intron | 40.0% | |
| GATGGGTAGAAACTAGACTT+AGG | + | chr5.1:42346702-42346721 | MS.gene80097:intron | 40.0% | |
| GCACTCTTTAGTGGAATTGT+AGG | + | chr5.1:42347787-42347806 | MS.gene80097:intron | 40.0% | |
| GCTTGAGAATTTCTGCATGA+AGG | + | chr5.1:42347635-42347654 | MS.gene80097:intron | 40.0% | |
| GGGAGTTTATTTGGACATGT+TGG | + | chr5.1:42348655-42348674 | MS.gene80097:CDS | 40.0% | |
| GTTTATTTGGACATGTTGGC+AGG | + | chr5.1:42348659-42348678 | MS.gene80097:CDS | 40.0% | |
| TAGCAACCATATTTAGGGGA+GGG | + | chr5.1:42346154-42346173 | MS.gene80097:intron | 40.0% | |
| TAGTAGGCCTACTTAGGTTA+GGG | + | chr5.1:42345211-42345230 | MS.gene80097:intron | 40.0% | |
| TATTGCACTCCTAGATGCAT+AGG | - | chr5.1:42350057-42350076 | None:intergenic | 40.0% | |
| TCTTCAAGAATTGGAGAGCT+TGG | + | chr5.1:42349183-42349202 | MS.gene80097:intron | 40.0% | |
| TGACGTAGATGAATGATGCA+CGG | - | chr5.1:42347942-42347961 | None:intergenic | 40.0% | |
| TGCGTGGCTTCCATTTAAAA+TGG | + | chr5.1:42347996-42348015 | MS.gene80097:intron | 40.0% | |
| TGCTTATGCAGCAGTTAGTT+GGG | + | chr5.1:42346126-42346145 | MS.gene80097:intron | 40.0% | |
| TGTGTTTGTGCACTCTTTAG+TGG | + | chr5.1:42347778-42347797 | MS.gene80097:intron | 40.0% | |
| TTGCTTATGCAGCAGTTAGT+TGG | + | chr5.1:42346125-42346144 | MS.gene80097:intron | 40.0% | |
| TTGTATAACGGCTTCTTCAG+CGG | - | chr5.1:42345073-42345092 | None:intergenic | 40.0% | |
| TTTATCGGAAGTGGTAAGAC+GGG | + | chr5.1:42346508-42346527 | MS.gene80097:intron | 40.0% | |
| TTTCCTGCTACCTTAGAGTA+AGG | + | chr5.1:42345151-42345170 | MS.gene80097:intron | 40.0% | |
| ! | ACAAGCTCACAGTTTTCCAA+TGG | + | chr5.1:42349158-42349177 | MS.gene80097:intron | 40.0% |
| ! | CAAGCTCACAGTTTTCCAAT+GGG | + | chr5.1:42349159-42349178 | MS.gene80097:intron | 40.0% |
| ! | CCAATGGGTTCTTCAAGAAT+TGG | + | chr5.1:42349174-42349193 | MS.gene80097:intron | 40.0% |
| ! | CCGATTTCTCTCTTTGTTTG+AGG | + | chr5.1:42349774-42349793 | MS.gene80097:intron | 40.0% |
| ! | GAAAAATCACGGTTCTGATG+TGG | + | chr5.1:42350340-42350359 | MS.gene80097:CDS | 40.0% |
| ! | GAGGAGACATACAGAAGTTT+TGG | + | chr5.1:42350297-42350316 | MS.gene80097:CDS | 40.0% |
| ! | GCAACATGTTGATTACACAC+CGG | - | chr5.1:42345265-42345284 | None:intergenic | 40.0% |
| ! | GCGTGGCTTCCATTTAAAAT+GGG | + | chr5.1:42347997-42348016 | MS.gene80097:intron | 40.0% |
| ! | GGATCTAGAGATTAATGGGT+TGG | + | chr5.1:42346854-42346873 | MS.gene80097:intron | 40.0% |
| ! | GTTTTCCTGAAAACTCAACC+CGG | - | chr5.1:42349687-42349706 | None:intergenic | 40.0% |
| !! | GGCATAAATTTGTGCTGCTT+AGG | + | chr5.1:42347678-42347697 | MS.gene80097:intron | 40.0% |
| !! | TAATGGGTTGGAGAAAGACA+TGG | + | chr5.1:42346866-42346885 | MS.gene80097:intron | 40.0% |
| !! | TTTCTTTGGGATAATCGACC+AGG | + | chr5.1:42348478-42348497 | MS.gene80097:CDS | 40.0% |
| !!! | ACCTGACTTTTTTACAGTCC+AGG | + | chr5.1:42348583-42348602 | MS.gene80097:intron | 40.0% |
| AAGGGGCTGAGTAAGGAAAT+TGG | + | chr5.1:42346097-42346116 | MS.gene80097:intron | 45.0% | |
| AATCACTAGTGGTAGGGTAG+GGG | + | chr5.1:42346796-42346815 | MS.gene80097:intron | 45.0% | |
| AATGAGGGTTTACGGAGGAA+TGG | + | chr5.1:42348868-42348887 | MS.gene80097:intron | 45.0% | |
| ACAGGGATTGTAATTCGTGC+CGG | - | chr5.1:42347114-42347133 | None:intergenic | 45.0% | |
| ACATGTAGAGAGAAGACCTG+TGG | + | chr5.1:42346733-42346752 | MS.gene80097:intron | 45.0% | |
| ACATTAGGTCTCACATGCCA+AGG | - | chr5.1:42345774-42345793 | None:intergenic | 45.0% | |
| AGGATGTTGTGTTGGATGTG+TGG | + | chr5.1:42346601-42346620 | MS.gene80097:intron | 45.0% | |
| AGGGGCTGAGTAAGGAAATT+GGG | + | chr5.1:42346098-42346117 | MS.gene80097:intron | 45.0% | |
| AGTAGGCCTACTTAGGTTAG+GGG | + | chr5.1:42345212-42345231 | MS.gene80097:intron | 45.0% | |
| CAAATCACTAGTGGTAGGGT+AGG | + | chr5.1:42346794-42346813 | MS.gene80097:intron | 45.0% | |
| CATATTTAGGGGAGGGAACA+TGG | + | chr5.1:42346161-42346180 | MS.gene80097:intron | 45.0% | |
| CATGTTCCCTCCCCTAAATA+TGG | - | chr5.1:42346163-42346182 | None:intergenic | 45.0% | |
| CCATCTAGCAAACTGTCTTC+TGG | - | chr5.1:42347882-42347901 | None:intergenic | 45.0% | |
| CCTACTACCAGCTAAACAAC+AGG | - | chr5.1:42345198-42345217 | None:intergenic | 45.0% | |
| CCTCAGTTATTACGAACCTC+CGG | + | chr5.1:42345243-42345262 | MS.gene80097:intron | 45.0% | |
| CCTTGAGGCAGCAAACAATT+TGG | + | chr5.1:42350373-42350392 | MS.gene80097:CDS | 45.0% | |
| CGAATAAACTTACCACACCC+TGG | + | chr5.1:42349447-42349466 | MS.gene80097:intron | 45.0% | |
| CGCAGGATTGTGGTAACATT+GGG | - | chr5.1:42349510-42349529 | None:intergenic | 45.0% | |
| CGCATCACATAAAACACCTG+AGG | - | chr5.1:42346459-42346478 | None:intergenic | 45.0% | |
| CGGAGGTTCGTAATAACTGA+GGG | - | chr5.1:42345245-42345264 | None:intergenic | 45.0% | |
| CTCAATAAAGGGGCTGAGTA+AGG | + | chr5.1:42346090-42346109 | MS.gene80097:intron | 45.0% | |
| GACGTAGATGAATGATGCAC+GGG | - | chr5.1:42347941-42347960 | None:intergenic | 45.0% | |
| GAGCGATTCGCAATACTTGA+AGG | - | chr5.1:42345347-42345366 | None:intergenic | 45.0% | |
| GAGGGAAATTCAAAGATCGC+AGG | - | chr5.1:42349527-42349546 | None:intergenic | 45.0% | |
| GAGTTGTACAGAGTACACCT+AGG | - | chr5.1:42347241-42347260 | None:intergenic | 45.0% | |
| GCATTAAAGAGAGAGGGTTG+GGG | + | chr5.1:42346656-42346675 | MS.gene80097:intron | 45.0% | |
| GGAGAATAGATCAGATGGAG+GGG | + | chr5.1:42346768-42346787 | MS.gene80097:intron | 45.0% | |
| GGAGTCAAATCACTAGTGGT+AGG | + | chr5.1:42346789-42346808 | MS.gene80097:intron | 45.0% | |
| GGCTGTGTGTGATATGCTAT+CGG | - | chr5.1:42349420-42349439 | None:intergenic | 45.0% | |
| GGGTAGAAACTAGACTTAGG+TGG | + | chr5.1:42346705-42346724 | MS.gene80097:intron | 45.0% | |
| GTAGTAGGCCTACTTAGGTT+AGG | + | chr5.1:42345210-42345229 | MS.gene80097:intron | 45.0% | |
| GTAGTCCACATTCGTTGCAA+CGG | - | chr5.1:42344982-42345001 | None:intergenic | 45.0% | |
| TAGAAGCTGAGAATTCTGCC+AGG | + | chr5.1:42350234-42350253 | MS.gene80097:CDS | 45.0% | |
| TCAAAACCGACGCAAGTTTC+CGG | - | chr5.1:42349631-42349650 | None:intergenic | 45.0% | |
| TCGCAGGATTGTGGTAACAT+TGG | - | chr5.1:42349511-42349530 | None:intergenic | 45.0% | |
| TCTGTGTAGAAAATGAGGGG+TGG | - | chr5.1:42345611-42345630 | None:intergenic | 45.0% | |
| TCTTTGAATTTCCCTCCGTG+CGG | + | chr5.1:42349531-42349550 | MS.gene80097:intron | 45.0% | |
| TGACAATGCTTCTTCTTGGG+TGG | - | chr5.1:42347148-42347167 | None:intergenic | 45.0% | |
| TGGAGAACTCAGTTGGAGTA+TGG | + | chr5.1:42348452-42348471 | MS.gene80097:CDS | 45.0% | |
| TGGTCCCCAGCAAATTATCT+TGG | + | chr5.1:42348255-42348274 | MS.gene80097:CDS | 45.0% | |
| TGTGTGTGATATGCTATCGG+AGG | - | chr5.1:42349417-42349436 | None:intergenic | 45.0% | |
| TTCCACACTTATAGACCTCC+AGG | - | chr5.1:42345420-42345439 | None:intergenic | 45.0% | |
| TTCTTTCTCAGCTTCTAGCG+TGG | - | chr5.1:42350620-42350639 | None:intergenic | 45.0% | |
| TTTGTCTCGATCACCATGAG+TGG | - | chr5.1:42345013-42345032 | None:intergenic | 45.0% | |
| ! | AAGCCTTTTCCCCACTAAGT+GGG | - | chr5.1:42346943-42346962 | None:intergenic | 45.0% |
| ! | ACAAATAGGCTGGTCCATTG+TGG | - | chr5.1:42345108-42345127 | None:intergenic | 45.0% |
| ! | ACATGTTGATTACACACCGG+AGG | - | chr5.1:42345262-42345281 | None:intergenic | 45.0% |
| ! | AGTGGAGCAATCCTGTGTTT+TGG | - | chr5.1:42348043-42348062 | None:intergenic | 45.0% |
| ! | CCAAATTGTTTGCTGCCTCA+AGG | - | chr5.1:42350376-42350395 | None:intergenic | 45.0% |
| ! | CCTGTTGTTTAGCTGGTAGT+AGG | + | chr5.1:42345195-42345214 | MS.gene80097:intron | 45.0% |
| ! | TGGCATTTGCTGAACATTGC+TGG | + | chr5.1:42347438-42347457 | MS.gene80097:intron | 45.0% |
| !! | CCAGAAGACAGTTTGCTAGA+TGG | + | chr5.1:42347879-42347898 | MS.gene80097:CDS | 45.0% |
| !! | CTACCTTACTCTAAGGTAGC+AGG | - | chr5.1:42345157-42345176 | None:intergenic | 45.0% |
| !! | CTCAAACATGTTGGTTTGCG+TGG | + | chr5.1:42347980-42347999 | MS.gene80097:intron | 45.0% |
| !! | GTGTGTAGTGGTTCTAGGAT+AGG | - | chr5.1:42345636-42345655 | None:intergenic | 45.0% |
| AAAATGAGGGGTGGCATGGA+TGG | - | chr5.1:42345602-42345621 | None:intergenic | 50.0% | |
| AAATGAGGGGTGGCATGGAT+GGG | - | chr5.1:42345601-42345620 | None:intergenic | 50.0% | |
| AACAATAGCACAAGCGGCTG+TGG | + | chr5.1:42350160-42350179 | MS.gene80097:CDS | 50.0% | |
| AGCATCAACCAATGGACCCA+GGG | - | chr5.1:42349467-42349486 | None:intergenic | 50.0% | |
| AGCTGGTAGTAGGCCTACTT+AGG | + | chr5.1:42345205-42345224 | MS.gene80097:intron | 50.0% | |
| AGTCACTAACGTGAGTCCCT+GGG | - | chr5.1:42345523-42345542 | None:intergenic | 50.0% | |
| CAACACCGTTGCAACGAATG+TGG | + | chr5.1:42344974-42344993 | MS.gene80097:CDS | 50.0% | |
| CAATGCCCCCTAACCTAAGT+AGG | - | chr5.1:42345221-42345240 | None:intergenic | 50.0% | |
| CACTTAGTGGGGAAAAGGCT+TGG | + | chr5.1:42346942-42346961 | MS.gene80097:intron | 50.0% | |
| CCGGAGGTTCGTAATAACTG+AGG | - | chr5.1:42345246-42345265 | None:intergenic | 50.0% | |
| CTCAGCTTCTAGCGTGGATT+TGG | - | chr5.1:42350614-42350633 | None:intergenic | 50.0% | |
| GAAGGGCTACACGTATCCTA+TGG | + | chr5.1:42347653-42347672 | MS.gene80097:intron | 50.0% | |
| GAGCCAGACAAGGATACAAG+TGG | - | chr5.1:42348061-42348080 | None:intergenic | 50.0% | |
| GAGGGGAGTCAAATCACTAG+TGG | + | chr5.1:42346785-42346804 | MS.gene80097:intron | 50.0% | |
| GCATTTCCGGAAACTTGCGT+CGG | + | chr5.1:42349622-42349641 | MS.gene80097:intron | 50.0% | |
| GCTAAAGTCTTGGCAGAAGC+CGG | + | chr5.1:42348230-42348249 | MS.gene80097:intron | 50.0% | |
| GCTCCACTTGTATCCTTGTC+TGG | + | chr5.1:42348055-42348074 | MS.gene80097:CDS | 50.0% | |
| GCTGATCCAGCATCAACCAA+TGG | - | chr5.1:42349475-42349494 | None:intergenic | 50.0% | |
| GCTGGATCAGCTCCTCATTT+GGG | + | chr5.1:42349484-42349503 | MS.gene80097:intron | 50.0% | |
| GGCTACACGTATCCTATGGT+AGG | + | chr5.1:42347657-42347676 | MS.gene80097:intron | 50.0% | |
| GGGTGGAATCAGCTGAAACA+GGG | - | chr5.1:42347131-42347150 | None:intergenic | 50.0% | |
| GGTAACATTGGGCCCAAATG+AGG | - | chr5.1:42349499-42349518 | None:intergenic | 50.0% | |
| GTAGAAAATGAGGGGTGGCA+TGG | - | chr5.1:42345606-42345625 | None:intergenic | 50.0% | |
| GTAGGCCTACTTAGGTTAGG+GGG | + | chr5.1:42345213-42345232 | MS.gene80097:intron | 50.0% | |
| GTGTGATATGCTATCGGAGG+TGG | - | chr5.1:42349414-42349433 | None:intergenic | 50.0% | |
| TATAACGGCTTCTTCAGCGG+TGG | - | chr5.1:42345070-42345089 | None:intergenic | 50.0% | |
| TCAGCTCGCATCTGCATTTC+CGG | + | chr5.1:42349609-42349628 | MS.gene80097:intron | 50.0% | |
| TGATCGAGACAAAGCTGTGG+TGG | + | chr5.1:42345020-42345039 | MS.gene80097:CDS | 50.0% | |
| TGCCTGGAGGTCTATAAGTG+TGG | + | chr5.1:42345415-42345434 | MS.gene80097:intron | 50.0% | |
| TGCTCGTGTGTAGTGGTTCT+AGG | - | chr5.1:42345641-42345660 | None:intergenic | 50.0% | |
| TGCTGGATCAGCTCCTCATT+TGG | + | chr5.1:42349483-42349502 | MS.gene80097:intron | 50.0% | |
| TGCTGTACGGGACAAAGTGT+TGG | + | chr5.1:42346534-42346553 | MS.gene80097:intron | 50.0% | |
| TGGGTGGAATCAGCTGAAAC+AGG | - | chr5.1:42347132-42347151 | None:intergenic | 50.0% | |
| TGGTGATCGAGACAAAGCTG+TGG | + | chr5.1:42345017-42345036 | MS.gene80097:CDS | 50.0% | |
| TGTGGAGAGGCTTTACCTTG+AGG | + | chr5.1:42350358-42350377 | MS.gene80097:CDS | 50.0% | |
| TTAGGGGAGGGAACATGGAA+GGG | + | chr5.1:42346166-42346185 | MS.gene80097:intron | 50.0% | |
| TTGGACATGTTGGCAGGAGA+TGG | + | chr5.1:42348665-42348684 | MS.gene80097:CDS | 50.0% | |
| TTTAGGGGAGGGAACATGGA+AGG | + | chr5.1:42346165-42346184 | MS.gene80097:intron | 50.0% | |
| ! | AGCCTTTTCCCCACTAAGTG+GGG | - | chr5.1:42346942-42346961 | None:intergenic | 50.0% |
| ! | ATCACGGTTCTGATGTGGAG+AGG | + | chr5.1:42350345-42350364 | MS.gene80097:CDS | 50.0% |
| ! | CAAGCCTTTTCCCCACTAAG+TGG | - | chr5.1:42346944-42346963 | None:intergenic | 50.0% |
| ! | GCCGCTTGTGCTATTGTTGA+AGG | - | chr5.1:42350158-42350177 | None:intergenic | 50.0% |
| ! | GCTGTACGGGACAAAGTGTT+GGG | + | chr5.1:42346535-42346554 | MS.gene80097:intron | 50.0% |
| ! | GTTTTCTAACTGGGCCAAGC+AGG | + | chr5.1:42349750-42349769 | MS.gene80097:intron | 50.0% |
| ! | TTTTCCCCACTAAGTGGGGT+CGG | - | chr5.1:42346938-42346957 | None:intergenic | 50.0% |
| !! | GGAATCCGGGTTGAGTTTTC+AGG | + | chr5.1:42349679-42349698 | MS.gene80097:intron | 50.0% |
| !! | TAATTTGCTGGGGACCACAC+CGG | - | chr5.1:42348252-42348271 | None:intergenic | 50.0% |
| !! | TTCAAATGGAGGAGTGCCTC+AGG | + | chr5.1:42346440-42346459 | MS.gene80097:intron | 50.0% |
| !! | TTGAATCTGGTAATGGGGGC+TGG | - | chr5.1:42345665-42345684 | None:intergenic | 50.0% |
| AATGAGGGGTGGCATGGATG+GGG | - | chr5.1:42345600-42345619 | None:intergenic | 55.0% | |
| AGAGAGAAATCGGGCCTGCT+TGG | - | chr5.1:42349767-42349786 | None:intergenic | 55.0% | |
| AGATCTGAGCTGCTTAGCCG+AGG | + | chr5.1:42350278-42350297 | MS.gene80097:CDS | 55.0% | |
| ATCCCATGTGCATCACCGCA+CGG | - | chr5.1:42349549-42349568 | None:intergenic | 55.0% | |
| ATGTAGCCGACCCCACTTAG+TGG | + | chr5.1:42346929-42346948 | MS.gene80097:intron | 55.0% | |
| CACATGGGATCGACAGTTGC+AGG | + | chr5.1:42349559-42349578 | MS.gene80097:intron | 55.0% | |
| CAGCATCAACCAATGGACCC+AGG | - | chr5.1:42349468-42349487 | None:intergenic | 55.0% | |
| CTCTTCTGTCTCAGCTTGCC+TGG | - | chr5.1:42350255-42350274 | None:intergenic | 55.0% | |
| CTGTCTATGCACTCTCTGCC+TGG | + | chr5.1:42345399-42345418 | MS.gene80097:intron | 55.0% | |
| GACCCCACTTAGTGGGGAAA+AGG | + | chr5.1:42346937-42346956 | MS.gene80097:intron | 55.0% | |
| GAGGGAACATGGAAGGGGAA+TGG | + | chr5.1:42346172-42346191 | MS.gene80097:intron | 55.0% | |
| GAGTCACTAACGTGAGTCCC+TGG | - | chr5.1:42345524-42345543 | None:intergenic | 55.0% | |
| GAGTGGTTAATGGGAGGGAG+AGG | - | chr5.1:42349209-42349228 | None:intergenic | 55.0% | |
| GGGATAATCGACCAGGTACG+TGG | + | chr5.1:42348485-42348504 | MS.gene80097:intron | 55.0% | |
| GTAAGACGGGCGATGCTGTA+CGG | + | chr5.1:42346521-42346540 | MS.gene80097:intron | 55.0% | |
| GTCTCGATCACCATGAGTGG+TGG | - | chr5.1:42345010-42345029 | None:intergenic | 55.0% | |
| TAAGACGGGCGATGCTGTAC+GGG | + | chr5.1:42346522-42346541 | MS.gene80097:intron | 55.0% | |
| TAGGGGAGGGAACATGGAAG+GGG | + | chr5.1:42346167-42346186 | MS.gene80097:intron | 55.0% | |
| TCGAGACAAAGCTGTGGTGG+TGG | + | chr5.1:42345023-42345042 | MS.gene80097:CDS | 55.0% | |
| TCTATGCACTCTCTGCCTGG+AGG | + | chr5.1:42345402-42345421 | MS.gene80097:intron | 55.0% | |
| TGTAGCCGACCCCACTTAGT+GGG | + | chr5.1:42346930-42346949 | MS.gene80097:intron | 55.0% | |
| TTACCACACCCTGGGTCCAT+TGG | + | chr5.1:42349456-42349475 | MS.gene80097:intron | 55.0% | |
| TTTCACTCCGACCACCACAC+CGG | + | chr5.1:42345573-42345592 | MS.gene80097:intron | 55.0% | |
| ! | CTGGGTCCATTGGTTGATGC+TGG | + | chr5.1:42349466-42349485 | MS.gene80097:intron | 55.0% |
| ! | GTGTGCATTAGCTCTCTGCG+AGG | - | chr5.1:42348916-42348935 | None:intergenic | 55.0% |
| !! | AGACAAAGCTGTGGTGGTGG+AGG | + | chr5.1:42345026-42345045 | MS.gene80097:CDS | 55.0% |
| AGTCTTGGCAGAAGCCGGTG+TGG | + | chr5.1:42348235-42348254 | MS.gene80097:intron | 60.0% | |
| CAACCAATGGACCCAGGGTG+TGG | - | chr5.1:42349462-42349481 | None:intergenic | 60.0% | |
| CATGTGCATCACCGCACGGA+GGG | - | chr5.1:42349545-42349564 | None:intergenic | 60.0% | |
| CTCCGTGCGGTGATGCACAT+GGG | + | chr5.1:42349544-42349563 | MS.gene80097:intron | 60.0% | |
| GCGAATCGCTCGTGTCTGTC+TGG | + | chr5.1:42345356-42345375 | MS.gene80097:intron | 60.0% | |
| GGCTGGATGCTCGTGTGTAG+TGG | - | chr5.1:42345648-42345667 | None:intergenic | 60.0% | |
| GTAGCCGACCCCACTTAGTG+GGG | + | chr5.1:42346931-42346950 | MS.gene80097:intron | 60.0% | |
| TTCACTCCGACCACCACACC+GGG | + | chr5.1:42345574-42345593 | MS.gene80097:intron | 60.0% | |
| ! | AGGAGCTTGCTCTGTGGCTG+GGG | - | chr5.1:42348896-42348915 | None:intergenic | 60.0% |
| ! | GAGGAGCTTGCTCTGTGGCT+GGG | - | chr5.1:42348897-42348916 | None:intergenic | 60.0% |
| ! | TCTGCGAGGAGCTTGCTCTG+TGG | - | chr5.1:42348902-42348921 | None:intergenic | 60.0% |
| !! | CAAAGCTGTGGTGGTGGAGG+AGG | + | chr5.1:42345029-42345048 | MS.gene80097:CDS | 60.0% |
| !! | CTGTGGCTCTGACAAGTGGC+AGG | + | chr5.1:42350177-42350196 | MS.gene80097:CDS | 60.0% |
| CCATGTGCATCACCGCACGG+AGG | - | chr5.1:42349546-42349565 | None:intergenic | 65.0% | |
| CCTCCGTGCGGTGATGCACA+TGG | + | chr5.1:42349543-42349562 | MS.gene80097:intron | 65.0% | |
| CGGAGGTGGCTGTGAGAGAC+AGG | - | chr5.1:42349400-42349419 | None:intergenic | 65.0% | |
| ! | CGAGGAGCTTGCTCTGTGGC+TGG | - | chr5.1:42348898-42348917 | None:intergenic | 65.0% |
| !! | AGCTGTGGTGGTGGAGGAGG+AGG | + | chr5.1:42345032-42345051 | MS.gene80097:CDS | 65.0% |
| !! | GCGGCTGTGGCTCTGACAAG+TGG | + | chr5.1:42350173-42350192 | MS.gene80097:CDS | 65.0% |
| ATGGATGGGGCCCGGTGTGG+TGG | - | chr5.1:42345587-42345606 | None:intergenic | 70.0% | |
| ATGGGGCCCGGTGTGGTGGT+CGG | - | chr5.1:42345583-42345602 | None:intergenic | 70.0% | |
| GGCATGGATGGGGCCCGGTG+TGG | - | chr5.1:42345590-42345609 | None:intergenic | 75.0% | |
| GGGGTGGCATGGATGGGGCC+CGG | - | chr5.1:42345595-42345614 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 42344956 | 42350639 | 42344956 | ID=MS.gene80097 |
| chr5.1 | mRNA | 42344956 | 42350639 | 42344956 | ID=MS.gene80097.t1;Parent=MS.gene80097 |
| chr5.1 | exon | 42344956 | 42345096 | 42344956 | ID=MS.gene80097.t1.exon1;Parent=MS.gene80097.t1 |
| chr5.1 | CDS | 42344956 | 42345096 | 42344956 | ID=cds.MS.gene80097.t1;Parent=MS.gene80097.t1 |
| chr5.1 | exon | 42347097 | 42347185 | 42347097 | ID=MS.gene80097.t1.exon2;Parent=MS.gene80097.t1 |
| chr5.1 | CDS | 42347097 | 42347185 | 42347097 | ID=cds.MS.gene80097.t1;Parent=MS.gene80097.t1 |
| chr5.1 | exon | 42347842 | 42347930 | 42347842 | ID=MS.gene80097.t1.exon3;Parent=MS.gene80097.t1 |
| chr5.1 | CDS | 42347842 | 42347930 | 42347842 | ID=cds.MS.gene80097.t1;Parent=MS.gene80097.t1 |
| chr5.1 | exon | 42348036 | 42348139 | 42348036 | ID=MS.gene80097.t1.exon4;Parent=MS.gene80097.t1 |
| chr5.1 | CDS | 42348036 | 42348139 | 42348036 | ID=cds.MS.gene80097.t1;Parent=MS.gene80097.t1 |
| chr5.1 | exon | 42348237 | 42348339 | 42348237 | ID=MS.gene80097.t1.exon5;Parent=MS.gene80097.t1 |
| chr5.1 | CDS | 42348237 | 42348339 | 42348237 | ID=cds.MS.gene80097.t1;Parent=MS.gene80097.t1 |
| chr5.1 | exon | 42348424 | 42348499 | 42348424 | ID=MS.gene80097.t1.exon6;Parent=MS.gene80097.t1 |
| chr5.1 | CDS | 42348424 | 42348499 | 42348424 | ID=cds.MS.gene80097.t1;Parent=MS.gene80097.t1 |
| chr5.1 | exon | 42348605 | 42348710 | 42348605 | ID=MS.gene80097.t1.exon7;Parent=MS.gene80097.t1 |
| chr5.1 | CDS | 42348605 | 42348710 | 42348605 | ID=cds.MS.gene80097.t1;Parent=MS.gene80097.t1 |
| chr5.1 | exon | 42350126 | 42350394 | 42350126 | ID=MS.gene80097.t1.exon8;Parent=MS.gene80097.t1 |
| chr5.1 | CDS | 42350126 | 42350394 | 42350126 | ID=cds.MS.gene80097.t1;Parent=MS.gene80097.t1 |
| chr5.1 | exon | 42350448 | 42350639 | 42350448 | ID=MS.gene80097.t1.exon9;Parent=MS.gene80097.t1 |
| chr5.1 | CDS | 42350448 | 42350639 | 42350448 | ID=cds.MS.gene80097.t1;Parent=MS.gene80097.t1 |
| Gene Sequence |
| Protein sequence |
