Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80151.t1 | XP_013442387.1 | 89.5 | 248 | 11 | 3 | 1 | 247 | 1 | 234 | 1.70E-106 | 395.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80151.t1 | P87242 | 46.2 | 197 | 97 | 4 | 60 | 248 | 3 | 198 | 6.5e-38 | 159.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80151.t1 | A0A072TGE2 | 89.5 | 248 | 11 | 3 | 1 | 247 | 1 | 234 | 1.2e-106 | 395.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene87886 | MS.gene80151 | PPI |
| MS.gene99675 | MS.gene80151 | PPI |
| MS.gene046441 | MS.gene80151 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80151.t1 | MTR_0194s0040 | 91.532 | 248 | 6 | 3 | 1 | 247 | 1 | 234 | 2.25e-157 | 436 |
| MS.gene80151.t1 | MTR_4g129850 | 63.366 | 202 | 68 | 3 | 45 | 240 | 15 | 216 | 4.48e-88 | 260 |
| MS.gene80151.t1 | MTR_4g129860 | 66.120 | 183 | 60 | 1 | 60 | 240 | 35 | 217 | 5.94e-85 | 253 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80151.t1 | AT1G26160 | 69.008 | 242 | 63 | 3 | 13 | 242 | 10 | 251 | 7.43e-115 | 330 |
| MS.gene80151.t1 | AT2G23820 | 69.714 | 175 | 53 | 0 | 67 | 241 | 80 | 254 | 5.44e-89 | 264 |
| MS.gene80151.t1 | AT1G26160 | 63.265 | 196 | 60 | 3 | 13 | 196 | 10 | 205 | 9.43e-81 | 241 |
| MS.gene80151.t1 | AT2G23820 | 68.987 | 158 | 49 | 0 | 67 | 224 | 80 | 237 | 2.22e-77 | 234 |
Find 58 sgRNAs with CRISPR-Local
Find 153 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTGAGAGGGTTCATGTTTC+TGG | 0.050788 | 5.1:+42089562 | None:intergenic |
| CTCATTGCTTCTGATGTTCC+TGG | 0.220721 | 5.1:-42089301 | MS.gene80151:CDS |
| AACAAAATGTGTCAAGTTCT+TGG | 0.241345 | 5.1:-42088264 | MS.gene80151:CDS |
| CATACTCCAACCACAGTTCT+TGG | 0.247596 | 5.1:+42088122 | None:intergenic |
| AGGGTTCATGTTTCTGGGTC+TGG | 0.250821 | 5.1:+42089568 | None:intergenic |
| TGAAAACAATTCTTCTTTAG+AGG | 0.265718 | 5.1:-42088101 | MS.gene80151:CDS |
| GGGAAGTTCCAAACTGAAAT+AGG | 0.300209 | 5.1:-42087419 | MS.gene80151:CDS |
| ACAAGCACTGGAATATGAAA+TGG | 0.360466 | 5.1:-42087757 | MS.gene80151:CDS |
| TGGGTTAATCATGGGATTAA+AGG | 0.371640 | 5.1:-42089370 | MS.gene80151:CDS |
| GTGAGAGGGTTCATGTTTCT+GGG | 0.373758 | 5.1:+42089563 | None:intergenic |
| CAGAAGAAGAGGAGGAGGAG+GGG | 0.376200 | 5.1:+42089535 | None:intergenic |
| AGAAGAAGAGGAGGAGGAGG+GGG | 0.377364 | 5.1:+42089536 | None:intergenic |
| GGGTTCATGTTTCTGGGTCT+GGG | 0.384724 | 5.1:+42089569 | None:intergenic |
| AAACTGAAATAGGTAAAAGT+TGG | 0.421614 | 5.1:-42087409 | MS.gene80151:CDS |
| AGCAGAAGAAGAGGAGGAGG+AGG | 0.426405 | 5.1:+42089533 | None:intergenic |
| TTATACTCAATAGCTATTGT+AGG | 0.435237 | 5.1:-42088351 | MS.gene80151:intron |
| GCAGAAGAAGAGGAGGAGGA+GGG | 0.435661 | 5.1:+42089534 | None:intergenic |
| GGGTTAATCATGGGATTAAA+GGG | 0.440585 | 5.1:-42089369 | MS.gene80151:CDS |
| TTAAAGCTTCCTGCTCCATT+CGG | 0.449281 | 5.1:+42088286 | None:intergenic |
| CGGAAAGGATGGGTTAATCA+TGG | 0.449614 | 5.1:-42089379 | MS.gene80151:CDS |
| TCAAAGCCATACGGTACATA+TGG | 0.474924 | 5.1:+42089329 | None:intergenic |
| AACTGAAATAGGTAAAAGTT+GGG | 0.477183 | 5.1:-42087408 | MS.gene80151:CDS |
| TGAAATGATTCTACAAGCAC+TGG | 0.492894 | 5.1:-42087769 | MS.gene80151:CDS |
| TGAAAAGAGCCGAATGGAGC+AGG | 0.493928 | 5.1:-42088295 | MS.gene80151:CDS |
| CAAGCACTGGAATATGAAAT+GGG | 0.501459 | 5.1:-42087756 | MS.gene80151:intron |
| ACATACCTTCTGCAATATCA+TGG | 0.513774 | 5.1:+42089161 | None:intergenic |
| ATGTGTCAAGTTCTTGGTGG+AGG | 0.521274 | 5.1:-42088258 | MS.gene80151:CDS |
| TGCAGAGCATGGAAAAGTAC+TGG | 0.522727 | 5.1:-42087554 | MS.gene80151:intron |
| TTAATAATTACGCAAGCAGT+CGG | 0.524958 | 5.1:-42089701 | MS.gene80151:CDS |
| TTCCTGGATTGAGTAGAGAA+AGG | 0.528805 | 5.1:-42089285 | MS.gene80151:intron |
| ACCATCTGATGGTGTGCCTA+AGG | 0.532689 | 5.1:-42088319 | MS.gene80151:CDS |
| GAGAGCATACCTTGAGAGTG+TGG | 0.537102 | 5.1:+42089490 | None:intergenic |
| GATAGCAGAAGAAGAGGAGG+AGG | 0.539992 | 5.1:+42089530 | None:intergenic |
| AAACGAGAGGAGCGTAGTTG+CGG | 0.541386 | 5.1:+42089601 | None:intergenic |
| ACGGTACATATGGTCAGCTA+TGG | 0.543472 | 5.1:+42089339 | None:intergenic |
| AAAATCGATAGCAGAAGAAG+AGG | 0.550747 | 5.1:+42089524 | None:intergenic |
| AACCTTTCTCTACTCAATCC+AGG | 0.552687 | 5.1:+42089283 | None:intergenic |
| AGACCACAAAACGGAAAGGA+TGG | 0.558864 | 5.1:-42089390 | MS.gene80151:CDS |
| ATCGATAGCAGAAGAAGAGG+AGG | 0.569881 | 5.1:+42089527 | None:intergenic |
| GGAAAGGATGGGTTAATCAT+GGG | 0.570066 | 5.1:-42089378 | MS.gene80151:CDS |
| AAAATGTGTCAAGTTCTTGG+TGG | 0.570688 | 5.1:-42088261 | MS.gene80151:CDS |
| AGCTGACCATATGTACCGTA+TGG | 0.583476 | 5.1:-42089335 | MS.gene80151:CDS |
| TAGTTGCGGAGAACAACAAA+GGG | 0.585261 | 5.1:+42089615 | None:intergenic |
| CACTCTCTGCCACACTCTCA+AGG | 0.588274 | 5.1:-42089499 | MS.gene80151:intron |
| GTTCTTGGTGGAGGGATGAG+AGG | 0.593011 | 5.1:-42088249 | MS.gene80151:intron |
| CTCGTCCATGATATTGCAGA+AGG | 0.594054 | 5.1:-42089166 | MS.gene80151:intron |
| GACCACAAAACGGAAAGGAT+GGG | 0.623136 | 5.1:-42089389 | MS.gene80151:CDS |
| GTAGTTGCGGAGAACAACAA+AGG | 0.625952 | 5.1:+42089614 | None:intergenic |
| GTATTGTGTAGACCACAAAA+CGG | 0.626167 | 5.1:-42089399 | MS.gene80151:intron |
| GCCTTAGGCACACCATCAGA+TGG | 0.628508 | 5.1:+42088318 | None:intergenic |
| TGAGATCCAAGAACTGTGGT+TGG | 0.629105 | 5.1:-42088128 | MS.gene80151:CDS |
| GTGTAGACCACAAAACGGAA+AGG | 0.633125 | 5.1:-42089394 | MS.gene80151:intron |
| TAAGGCTGAAAAGAGCCGAA+TGG | 0.640673 | 5.1:-42088301 | MS.gene80151:CDS |
| GGAGATATAACACCATCTGA+TGG | 0.641949 | 5.1:-42088330 | MS.gene80151:CDS |
| TGTGTCAAGTTCTTGGTGGA+GGG | 0.662562 | 5.1:-42088257 | MS.gene80151:CDS |
| TGAGTGACATCAAAGCCATA+CGG | 0.663318 | 5.1:+42089320 | None:intergenic |
| GGTTAATCATGGGATTAAAG+GGG | 0.672063 | 5.1:-42089368 | MS.gene80151:CDS |
| CTGATGAGATCCAAGAACTG+TGG | 0.731755 | 5.1:-42088132 | MS.gene80151:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CAATTCAATTAAATTACATA+AGG | + | chr5.1:42087629-42087648 | None:intergenic | 15.0% |
| !! | TTTAATACATATACAAACAA+AGG | + | chr5.1:42088101-42088120 | None:intergenic | 15.0% |
| !!! | AATTTTTTGTTTTGTATTCA+GGG | - | chr5.1:42089624-42089643 | MS.gene80151:CDS | 15.0% |
| !!! | TAATTTTTTGTTTTGTATTC+AGG | - | chr5.1:42089623-42089642 | MS.gene80151:CDS | 15.0% |
| !!! | TATTTTTTAGCATTACAAAA+CGG | + | chr5.1:42089468-42089487 | None:intergenic | 15.0% |
| !! | AAAAATTATGTGATTGACTA+AGG | + | chr5.1:42089611-42089630 | None:intergenic | 20.0% |
| !! | AAGTTAGTAGTATTAATTAG+GGG | - | chr5.1:42088144-42088163 | MS.gene80151:intron | 20.0% |
| !! | ACAAGTTAGTAGTATTAATT+AGG | - | chr5.1:42088142-42088161 | MS.gene80151:intron | 20.0% |
| !! | CAAGTTAGTAGTATTAATTA+GGG | - | chr5.1:42088143-42088162 | MS.gene80151:intron | 20.0% |
| !! | CAATAAAGATAAAAGGAATT+TGG | - | chr5.1:42088627-42088646 | MS.gene80151:intron | 20.0% |
| !! | TAAATTACATAAGGAATGAA+TGG | + | chr5.1:42087620-42087639 | None:intergenic | 20.0% |
| !! | TAGATCTGTAATATGAAAAT+TGG | - | chr5.1:42089229-42089248 | MS.gene80151:intron | 20.0% |
| !!! | GAGAAATTTTTGCTTATAAT+AGG | + | chr5.1:42088377-42088396 | None:intergenic | 20.0% |
| !!! | TTTTCTTCTTGAAATGATTT+CGG | + | chr5.1:42089684-42089703 | None:intergenic | 20.0% |
| ! | AAACTGAAATAGGTAAAAGT+TGG | - | chr5.1:42089654-42089673 | MS.gene80151:CDS | 25.0% |
| ! | AAATGTAATGTAATGCAATC+AGG | + | chr5.1:42088323-42088342 | None:intergenic | 25.0% |
| ! | AACTGAAATAGGTAAAAGTT+GGG | - | chr5.1:42089655-42089674 | MS.gene80151:CDS | 25.0% |
| ! | AAGAAATGTGAAAAAAGCAA+AGG | + | chr5.1:42088019-42088038 | None:intergenic | 25.0% |
| ! | AGAAATGTGAAAAAAGCAAA+GGG | + | chr5.1:42088018-42088037 | None:intergenic | 25.0% |
| ! | AGGTCTACAATAAAGATAAA+AGG | - | chr5.1:42088620-42088639 | MS.gene80151:intron | 25.0% |
| ! | ATGAATCTGAAAAAAGAGAT+TGG | - | chr5.1:42088458-42088477 | MS.gene80151:intron | 25.0% |
| ! | ATGCATCTAGTAATTTGAAA+AGG | - | chr5.1:42088190-42088209 | MS.gene80151:intron | 25.0% |
| ! | CTTTCGTAATATGAATTCAA+AGG | + | chr5.1:42089370-42089389 | None:intergenic | 25.0% |
| ! | TACAAGTTATAAACACTATC+CGG | + | chr5.1:42088485-42088504 | None:intergenic | 25.0% |
| ! | TATACAAACAAAGGACAATA+TGG | + | chr5.1:42088092-42088111 | None:intergenic | 25.0% |
| ! | TGAAAACAATTCTTCTTTAG+AGG | - | chr5.1:42088962-42088981 | MS.gene80151:intron | 25.0% |
| ! | TGCATCTAGTAATTTGAAAA+GGG | - | chr5.1:42088191-42088210 | MS.gene80151:intron | 25.0% |
| ! | TTATACTCAATAGCTATTGT+AGG | - | chr5.1:42088712-42088731 | MS.gene80151:intron | 25.0% |
| !! | AACTTTTACCTATTTCAGTT+TGG | + | chr5.1:42089655-42089674 | None:intergenic | 25.0% |
| !! | TATTAATTAGGGGTATGTTT+AGG | - | chr5.1:42088154-42088173 | MS.gene80151:intron | 25.0% |
| !! | TTTGTCACTAAATTTTGCTT+TGG | + | chr5.1:42088511-42088530 | None:intergenic | 25.0% |
| !!! | ATTTTTCTTTTAAGTTCCGT+CGG | - | chr5.1:42088850-42088869 | MS.gene80151:intron | 25.0% |
| !!! | TGTTGTTAAAGATTTTGACA+AGG | - | chr5.1:42088989-42089008 | MS.gene80151:intron | 25.0% |
| !!! | TTTGAGATGACATTCTTTTT+TGG | - | chr5.1:42088899-42088918 | MS.gene80151:intron | 25.0% |
| AACAAAATGTGTCAAGTTCT+TGG | - | chr5.1:42088799-42088818 | MS.gene80151:intron | 30.0% | |
| AACAGAGAAAGGTTTAATGA+AGG | + | chr5.1:42089070-42089089 | None:intergenic | 30.0% | |
| AATTTACTTTGAGTCCAAGA+TGG | + | chr5.1:42089095-42089114 | None:intergenic | 30.0% | |
| AGATAAAAGGAATTTGGCTA+AGG | - | chr5.1:42088633-42088652 | MS.gene80151:intron | 30.0% | |
| ATGATAACTAATGCTACAAG+AGG | + | chr5.1:42089130-42089149 | None:intergenic | 30.0% | |
| GAAATGCATGAATCCTTATT+TGG | - | chr5.1:42089584-42089603 | MS.gene80151:CDS | 30.0% | |
| GCATCTAGTAATTTGAAAAG+GGG | - | chr5.1:42088192-42088211 | MS.gene80151:intron | 30.0% | |
| GGACAGAAATAAAGTCAAAT+GGG | - | chr5.1:42088226-42088245 | MS.gene80151:intron | 30.0% | |
| GTAGTATAAACCAGATACAT+TGG | - | chr5.1:42088428-42088447 | MS.gene80151:intron | 30.0% | |
| TGAAAAGGGGTTTAGATTTA+GGG | - | chr5.1:42088205-42088224 | MS.gene80151:intron | 30.0% | |
| TGATAACTAATGCTACAAGA+GGG | + | chr5.1:42089129-42089148 | None:intergenic | 30.0% | |
| TTAATAATTACGCAAGCAGT+CGG | - | chr5.1:42087362-42087381 | MS.gene80151:CDS | 30.0% | |
| TTACATAAGGAATGAATGGA+TGG | + | chr5.1:42087616-42087635 | None:intergenic | 30.0% | |
| TTCTCAGATTCATTGAATGA+CGG | - | chr5.1:42088392-42088411 | MS.gene80151:intron | 30.0% | |
| TTGAAAAGGGGTTTAGATTT+AGG | - | chr5.1:42088204-42088223 | MS.gene80151:intron | 30.0% | |
| TTGATGAGTTCAACAGTTAA+AGG | + | chr5.1:42089405-42089424 | None:intergenic | 30.0% | |
| TTTATTGTAGACCTATACAC+CGG | + | chr5.1:42088614-42088633 | None:intergenic | 30.0% | |
| ! | ATCTAAAGATGCATTTTACG+AGG | + | chr5.1:42089214-42089233 | None:intergenic | 30.0% |
| ! | CTACGATAATAGATTTTCGT+TGG | + | chr5.1:42089166-42089185 | None:intergenic | 30.0% |
| ! | GAATTTTTCATTTCAACTGC+AGG | - | chr5.1:42089534-42089553 | MS.gene80151:CDS | 30.0% |
| ! | TCGTAGATGTATCTGAAATT+TGG | - | chr5.1:42089180-42089199 | MS.gene80151:CDS | 30.0% |
| ! | TCTAAAGATGCATTTTACGA+GGG | + | chr5.1:42089213-42089232 | None:intergenic | 30.0% |
| !!! | CTAATTGCATTGTTTTGATC+AGG | - | chr5.1:42089270-42089289 | MS.gene80151:intron | 30.0% |
| AAAATCGATAGCAGAAGAAG+AGG | + | chr5.1:42087542-42087561 | None:intergenic | 35.0% | |
| AAAATGTGTCAAGTTCTTGG+TGG | - | chr5.1:42088802-42088821 | MS.gene80151:intron | 35.0% | |
| AATGAATGGATGGATCTTTG+TGG | + | chr5.1:42087606-42087625 | None:intergenic | 35.0% | |
| AATGTGAAAAAAGCAAAGGG+TGG | + | chr5.1:42088015-42088034 | None:intergenic | 35.0% | |
| ACATACCTTCTGCAATATCA+TGG | + | chr5.1:42087905-42087924 | None:intergenic | 35.0% | |
| CAAATGGGTGGTTAGATATA+GGG | - | chr5.1:42088241-42088260 | MS.gene80151:intron | 35.0% | |
| CAGAAATAAAGTCAAATGGG+TGG | - | chr5.1:42088229-42088248 | MS.gene80151:intron | 35.0% | |
| CATCGAATAACCAATGTATC+TGG | + | chr5.1:42088441-42088460 | None:intergenic | 35.0% | |
| GATTGACTAAGGTCCAAATA+AGG | + | chr5.1:42089600-42089619 | None:intergenic | 35.0% | |
| GGGACAGAAATAAAGTCAAA+TGG | - | chr5.1:42088225-42088244 | MS.gene80151:intron | 35.0% | |
| GGGTTAATCATGGGATTAAA+GGG | - | chr5.1:42087694-42087713 | MS.gene80151:intron | 35.0% | |
| GGTTAATCATGGGATTAAAG+GGG | - | chr5.1:42087695-42087714 | MS.gene80151:intron | 35.0% | |
| GTATTGTGTAGACCACAAAA+CGG | - | chr5.1:42087664-42087683 | MS.gene80151:intron | 35.0% | |
| TATGAAAATTGGAGACCTTC+TGG | - | chr5.1:42089240-42089259 | MS.gene80151:intron | 35.0% | |
| TCAAATGGGTGGTTAGATAT+AGG | - | chr5.1:42088240-42088259 | MS.gene80151:intron | 35.0% | |
| TCTGAAAAAAGAGATTGGAC+CGG | - | chr5.1:42088463-42088482 | MS.gene80151:intron | 35.0% | |
| TGAAATGATTCTACAAGCAC+TGG | - | chr5.1:42089294-42089313 | MS.gene80151:CDS | 35.0% | |
| TGCATCATCATCATCATCAT+CGG | - | chr5.1:42087401-42087420 | MS.gene80151:CDS | 35.0% | |
| TGGGTTAATCATGGGATTAA+AGG | - | chr5.1:42087693-42087712 | MS.gene80151:intron | 35.0% | |
| !! | ACAAGCACTGGAATATGAAA+TGG | - | chr5.1:42089306-42089325 | MS.gene80151:CDS | 35.0% |
| !! | CAAGCACTGGAATATGAAAT+GGG | - | chr5.1:42089307-42089326 | MS.gene80151:CDS | 35.0% |
| !!! | ACTCAACACATTGCTTTTTC+CGG | - | chr5.1:42088592-42088611 | MS.gene80151:intron | 35.0% |
| AACCTTTCTCTACTCAATCC+AGG | + | chr5.1:42087783-42087802 | None:intergenic | 40.0% | |
| AGACAACTAAGCAACAGTTC+AGG | + | chr5.1:42088559-42088578 | None:intergenic | 40.0% | |
| AGCAAAGGGTGGTTACATTA+AGG | + | chr5.1:42088004-42088023 | None:intergenic | 40.0% | |
| ATCATCATCATCATCATCGG+CGG | - | chr5.1:42087404-42087423 | MS.gene80151:CDS | 40.0% | |
| ATTGTACATTGTGCAGAGCA+TGG | - | chr5.1:42089498-42089517 | MS.gene80151:intron | 40.0% | |
| CCAAGATGGTAAACAGAGAA+AGG | + | chr5.1:42089081-42089100 | None:intergenic | 40.0% | |
| CCTTTCTCTGTTTACCATCT+TGG | - | chr5.1:42089078-42089097 | MS.gene80151:intron | 40.0% | |
| GCAAAGGGTGGTTACATTAA+GGG | + | chr5.1:42088003-42088022 | None:intergenic | 40.0% | |
| GCAATTAGAAAGCAACCAGA+AGG | + | chr5.1:42089258-42089277 | None:intergenic | 40.0% | |
| GCTTATAATAGGTGACGAGA+GGG | + | chr5.1:42088366-42088385 | None:intergenic | 40.0% | |
| GGAGATATAACACCATCTGA+TGG | - | chr5.1:42088733-42088752 | MS.gene80151:intron | 40.0% | |
| GGGAAGTTCCAAACTGAAAT+AGG | - | chr5.1:42089644-42089663 | MS.gene80151:CDS | 40.0% | |
| TAGTTGCGGAGAACAACAAA+GGG | + | chr5.1:42087451-42087470 | None:intergenic | 40.0% | |
| TCAAAGCCATACGGTACATA+TGG | + | chr5.1:42087737-42087756 | None:intergenic | 40.0% | |
| TGAGTGACATCAAAGCCATA+CGG | + | chr5.1:42087746-42087765 | None:intergenic | 40.0% | |
| TGCTTATAATAGGTGACGAG+AGG | + | chr5.1:42088367-42088386 | None:intergenic | 40.0% | |
| TTAAAGCTTCCTGCTCCATT+CGG | + | chr5.1:42088780-42088799 | None:intergenic | 40.0% | |
| TTCCTGGATTGAGTAGAGAA+AGG | - | chr5.1:42087778-42087797 | MS.gene80151:intron | 40.0% | |
| ! | AACGATTATCAAAGCACTCG+AGG | + | chr5.1:42088293-42088312 | None:intergenic | 40.0% |
| ! | ATTATCAAAGCACTCGAGGT+AGG | + | chr5.1:42088289-42088308 | None:intergenic | 40.0% |
| ! | TGATGATGATGATGATGCAG+TGG | + | chr5.1:42087400-42087419 | None:intergenic | 40.0% |
| !! | GGAAAGGATGGGTTAATCAT+GGG | - | chr5.1:42087685-42087704 | MS.gene80151:intron | 40.0% |
| !!! | CATTGCTTTTTCCGGTGTAT+AGG | - | chr5.1:42088600-42088619 | MS.gene80151:intron | 40.0% |
| ACGGTACATATGGTCAGCTA+TGG | + | chr5.1:42087727-42087746 | None:intergenic | 45.0% | |
| AGACCACAAAACGGAAAGGA+TGG | - | chr5.1:42087673-42087692 | MS.gene80151:intron | 45.0% | |
| AGCTGACCATATGTACCGTA+TGG | - | chr5.1:42087728-42087747 | MS.gene80151:intron | 45.0% | |
| AGGGTGGTTACATTAAGGGA+CGG | + | chr5.1:42087999-42088018 | None:intergenic | 45.0% | |
| ATCCATCTGCATTGCGTACT+AGG | + | chr5.1:42089028-42089047 | None:intergenic | 45.0% | |
| ATCGATAGCAGAAGAAGAGG+AGG | + | chr5.1:42087539-42087558 | None:intergenic | 45.0% | |
| ATGTGTCAAGTTCTTGGTGG+AGG | - | chr5.1:42088805-42088824 | MS.gene80151:intron | 45.0% | |
| CACAGCACAGAAGAAAGCAA+AGG | + | chr5.1:42087858-42087877 | None:intergenic | 45.0% | |
| CATACTCCAACCACAGTTCT+TGG | + | chr5.1:42088944-42088963 | None:intergenic | 45.0% | |
| CTCATTGCTTCTGATGTTCC+TGG | - | chr5.1:42087762-42087781 | MS.gene80151:CDS | 45.0% | |
| CTCGTCCATGATATTGCAGA+AGG | - | chr5.1:42087897-42087916 | MS.gene80151:intron | 45.0% | |
| CTGATGAGATCCAAGAACTG+TGG | - | chr5.1:42088931-42088950 | MS.gene80151:intron | 45.0% | |
| GACCACAAAACGGAAAGGAT+GGG | - | chr5.1:42087674-42087693 | MS.gene80151:intron | 45.0% | |
| GCCAAATTTCAAAGCTCCGA+CGG | + | chr5.1:42088869-42088888 | None:intergenic | 45.0% | |
| GCGCAATTTAGTGAGTGAGA+AGG | + | chr5.1:42087936-42087955 | None:intergenic | 45.0% | |
| GTAGTTGCGGAGAACAACAA+AGG | + | chr5.1:42087452-42087471 | None:intergenic | 45.0% | |
| GTGAGAGGGTTCATGTTTCT+GGG | + | chr5.1:42087503-42087522 | None:intergenic | 45.0% | |
| GTGTAGACCACAAAACGGAA+AGG | - | chr5.1:42087669-42087688 | MS.gene80151:intron | 45.0% | |
| TAAGGCTGAAAAGAGCCGAA+TGG | - | chr5.1:42088762-42088781 | MS.gene80151:intron | 45.0% | |
| TACCTAGTACGCAATGCAGA+TGG | - | chr5.1:42089023-42089042 | MS.gene80151:intron | 45.0% | |
| TGAGATCCAAGAACTGTGGT+TGG | - | chr5.1:42088935-42088954 | MS.gene80151:intron | 45.0% | |
| TGGGAACGAACAAAAACGAG+AGG | + | chr5.1:42087478-42087497 | None:intergenic | 45.0% | |
| TGGGTGGTTAGATATAGGGA+CGG | - | chr5.1:42088245-42088264 | MS.gene80151:intron | 45.0% | |
| TGGTTACATTAAGGGACGGA+GGG | + | chr5.1:42087995-42088014 | None:intergenic | 45.0% | |
| TGGTTAGATATAGGGACGGA+GGG | - | chr5.1:42088249-42088268 | MS.gene80151:intron | 45.0% | |
| TGTGAGAGGGTTCATGTTTC+TGG | + | chr5.1:42087504-42087523 | None:intergenic | 45.0% | |
| TGTGTCAAGTTCTTGGTGGA+GGG | - | chr5.1:42088806-42088825 | MS.gene80151:intron | 45.0% | |
| ! | AACCCATCCTTTCCGTTTTG+TGG | + | chr5.1:42087679-42087698 | None:intergenic | 45.0% |
| ! | ATTCGGCTCTTTTCAGCCTT+AGG | + | chr5.1:42088763-42088782 | None:intergenic | 45.0% |
| ! | TGCAGAGCATGGAAAAGTAC+TGG | - | chr5.1:42089509-42089528 | MS.gene80151:CDS | 45.0% |
| !! | CGGAAAGGATGGGTTAATCA+TGG | - | chr5.1:42087684-42087703 | MS.gene80151:intron | 45.0% |
| !! | TCCGTCGGAGCTTTGAAATT+TGG | - | chr5.1:42088865-42088884 | MS.gene80151:intron | 45.0% |
| GATAGCAGAAGAAGAGGAGG+AGG | + | chr5.1:42087536-42087555 | None:intergenic | 50.0% | |
| GTGGTTACATTAAGGGACGG+AGG | + | chr5.1:42087996-42088015 | None:intergenic | 50.0% | |
| GTGGTTAGATATAGGGACGG+AGG | - | chr5.1:42088248-42088267 | MS.gene80151:intron | 50.0% | |
| TGAAAAGAGCCGAATGGAGC+AGG | - | chr5.1:42088768-42088787 | MS.gene80151:intron | 50.0% | |
| ! | AAACGAGAGGAGCGTAGTTG+CGG | + | chr5.1:42087465-42087484 | None:intergenic | 50.0% |
| ! | ACCATCTGATGGTGTGCCTA+AGG | - | chr5.1:42088744-42088763 | MS.gene80151:intron | 50.0% |
| ! | GAGAGCATACCTTGAGAGTG+TGG | + | chr5.1:42087576-42087595 | None:intergenic | 50.0% |
| !! | AGGGTTCATGTTTCTGGGTC+TGG | + | chr5.1:42087498-42087517 | None:intergenic | 50.0% |
| !! | GGGTTCATGTTTCTGGGTCT+GGG | + | chr5.1:42087497-42087516 | None:intergenic | 50.0% |
| AGAAGAAGAGGAGGAGGAGG+GGG | + | chr5.1:42087530-42087549 | None:intergenic | 55.0% | |
| AGCAGAAGAAGAGGAGGAGG+AGG | + | chr5.1:42087533-42087552 | None:intergenic | 55.0% | |
| CACTCTCTGCCACACTCTCA+AGG | - | chr5.1:42087564-42087583 | MS.gene80151:intron | 55.0% | |
| CAGAAGAAGAGGAGGAGGAG+GGG | + | chr5.1:42087531-42087550 | None:intergenic | 55.0% | |
| GCAGAAGAAGAGGAGGAGGA+GGG | + | chr5.1:42087532-42087551 | None:intergenic | 55.0% | |
| GCCTTAGGCACACCATCAGA+TGG | + | chr5.1:42088748-42088767 | None:intergenic | 55.0% | |
| GTTCTTGGTGGAGGGATGAG+AGG | - | chr5.1:42088814-42088833 | MS.gene80151:intron | 55.0% | |
| AGAAGAGGAGGAGGAGGGGG+AGG | + | chr5.1:42087527-42087546 | None:intergenic | 65.0% | |
| ! | GAGGAGGGGGAGGTGTGAGA+GGG | + | chr5.1:42087517-42087536 | None:intergenic | 65.0% |
| ! | GGAGGAGGGGGAGGTGTGAG+AGG | + | chr5.1:42087518-42087537 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 42087355 | 42089730 | 42087355 | ID=MS.gene80151 |
| chr5.1 | mRNA | 42087355 | 42089730 | 42087355 | ID=MS.gene80151.t1;Parent=MS.gene80151 |
| chr5.1 | exon | 42089500 | 42089730 | 42089500 | ID=MS.gene80151.t1.exon1;Parent=MS.gene80151.t1 |
| chr5.1 | CDS | 42089500 | 42089730 | 42089500 | ID=cds.MS.gene80151.t1;Parent=MS.gene80151.t1 |
| chr5.1 | exon | 42089286 | 42089410 | 42089286 | ID=MS.gene80151.t1.exon2;Parent=MS.gene80151.t1 |
| chr5.1 | CDS | 42089286 | 42089410 | 42089286 | ID=cds.MS.gene80151.t1;Parent=MS.gene80151.t1 |
| chr5.1 | exon | 42089167 | 42089204 | 42089167 | ID=MS.gene80151.t1.exon3;Parent=MS.gene80151.t1 |
| chr5.1 | CDS | 42089167 | 42089204 | 42089167 | ID=cds.MS.gene80151.t1;Parent=MS.gene80151.t1 |
| chr5.1 | exon | 42088250 | 42088360 | 42088250 | ID=MS.gene80151.t1.exon4;Parent=MS.gene80151.t1 |
| chr5.1 | CDS | 42088250 | 42088360 | 42088250 | ID=cds.MS.gene80151.t1;Parent=MS.gene80151.t1 |
| chr5.1 | exon | 42088075 | 42088154 | 42088075 | ID=MS.gene80151.t1.exon5;Parent=MS.gene80151.t1 |
| chr5.1 | CDS | 42088075 | 42088154 | 42088075 | ID=cds.MS.gene80151.t1;Parent=MS.gene80151.t1 |
| chr5.1 | exon | 42087757 | 42087793 | 42087757 | ID=MS.gene80151.t1.exon6;Parent=MS.gene80151.t1 |
| chr5.1 | CDS | 42087757 | 42087793 | 42087757 | ID=cds.MS.gene80151.t1;Parent=MS.gene80151.t1 |
| chr5.1 | exon | 42087530 | 42087571 | 42087530 | ID=MS.gene80151.t1.exon7;Parent=MS.gene80151.t1 |
| chr5.1 | CDS | 42087530 | 42087571 | 42087530 | ID=cds.MS.gene80151.t1;Parent=MS.gene80151.t1 |
| chr5.1 | exon | 42087355 | 42087440 | 42087355 | ID=MS.gene80151.t1.exon8;Parent=MS.gene80151.t1 |
| chr5.1 | CDS | 42087355 | 42087440 | 42087355 | ID=cds.MS.gene80151.t1;Parent=MS.gene80151.t1 |
| Gene Sequence |
| Protein sequence |
