Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80230.t1 | XP_024633416.1 | 93.6 | 575 | 33 | 1 | 1 | 571 | 1 | 575 | 3.70E-306 | 1060.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80230.t1 | A0JJX5 | 69.6 | 570 | 170 | 1 | 1 | 570 | 1 | 567 | 7.0e-237 | 821.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80230.t1 | G7JAG6 | 91.8 | 575 | 33 | 2 | 1 | 571 | 1 | 565 | 4.6e-298 | 1032.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052484 | MS.gene80230 | 0.813611 | 2.34E-51 | -1.69E-46 |
| MS.gene055722 | MS.gene80230 | 0.802708 | 4.94E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80230.t1 | MTR_3g106660 | 96.696 | 575 | 5 | 2 | 1 | 571 | 1 | 565 | 0.0 | 1120 |
| MS.gene80230.t1 | MTR_4g115660 | 71.223 | 556 | 155 | 2 | 15 | 570 | 15 | 565 | 0.0 | 856 |
| MS.gene80230.t1 | MTR_8g035590 | 39.024 | 410 | 234 | 10 | 1 | 404 | 1 | 400 | 1.80e-88 | 283 |
| MS.gene80230.t1 | MTR_8g035590 | 39.175 | 97 | 58 | 1 | 445 | 541 | 263 | 358 | 4.26e-13 | 72.4 |
| MS.gene80230.t1 | MTR_7g075790 | 37.150 | 428 | 252 | 11 | 1 | 422 | 1 | 417 | 1.80e-87 | 280 |
| MS.gene80230.t1 | MTR_7g075790 | 36.000 | 100 | 61 | 2 | 445 | 544 | 262 | 358 | 2.51e-11 | 66.6 |
| MS.gene80230.t1 | MTR_1g025550 | 29.268 | 574 | 342 | 16 | 1 | 562 | 11 | 532 | 3.43e-69 | 233 |
| MS.gene80230.t1 | MTR_4g073400 | 28.114 | 562 | 350 | 14 | 9 | 562 | 19 | 534 | 7.89e-66 | 224 |
| MS.gene80230.t1 | MTR_1g094810 | 26.224 | 572 | 366 | 15 | 1 | 562 | 1 | 526 | 4.05e-56 | 197 |
| MS.gene80230.t1 | MTR_8g104330 | 22.649 | 521 | 335 | 18 | 76 | 560 | 103 | 591 | 4.59e-14 | 75.9 |
| MS.gene80230.t1 | MTR_8g104330 | 22.649 | 521 | 335 | 18 | 76 | 560 | 103 | 591 | 7.96e-14 | 75.1 |
| MS.gene80230.t1 | MTR_8g104330 | 22.364 | 550 | 355 | 19 | 51 | 560 | 21 | 538 | 1.37e-13 | 74.3 |
| MS.gene80230.t1 | MTR_8g032300 | 32.031 | 128 | 83 | 2 | 445 | 569 | 3 | 129 | 1.49e-13 | 68.6 |
| MS.gene80230.t1 | MTR_2g072180 | 23.030 | 330 | 226 | 12 | 66 | 373 | 65 | 388 | 1.99e-13 | 73.9 |
| MS.gene80230.t1 | MTR_6g084400 | 23.136 | 523 | 335 | 24 | 76 | 560 | 101 | 594 | 4.30e-13 | 72.8 |
| MS.gene80230.t1 | MTR_8g032320 | 32.283 | 127 | 80 | 4 | 445 | 567 | 3 | 127 | 5.81e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80230.t1 | AT1G05500 | 69.825 | 570 | 161 | 4 | 1 | 570 | 1 | 559 | 0.0 | 848 |
| MS.gene80230.t1 | AT1G05500 | 72.209 | 421 | 111 | 2 | 150 | 570 | 1 | 415 | 0.0 | 641 |
| MS.gene80230.t1 | AT3G61050 | 39.756 | 410 | 230 | 11 | 1 | 404 | 1 | 399 | 9.33e-90 | 286 |
| MS.gene80230.t1 | AT3G61050 | 39.756 | 410 | 230 | 11 | 1 | 404 | 1 | 399 | 9.33e-90 | 286 |
| MS.gene80230.t1 | AT2G20990 | 30.420 | 572 | 341 | 13 | 2 | 562 | 12 | 537 | 2.39e-74 | 246 |
| MS.gene80230.t1 | AT5G04220 | 27.130 | 575 | 360 | 14 | 1 | 563 | 11 | 538 | 2.70e-70 | 236 |
| MS.gene80230.t1 | AT5G04220 | 29.109 | 505 | 312 | 13 | 71 | 563 | 6 | 476 | 3.05e-70 | 234 |
| MS.gene80230.t1 | AT2G20990 | 29.195 | 596 | 341 | 14 | 2 | 562 | 12 | 561 | 1.45e-69 | 234 |
| MS.gene80230.t1 | AT2G20990 | 28.525 | 610 | 341 | 14 | 2 | 562 | 12 | 575 | 6.87e-67 | 228 |
| MS.gene80230.t1 | AT1G20080 | 29.123 | 570 | 349 | 16 | 1 | 562 | 11 | 533 | 3.67e-66 | 224 |
| MS.gene80230.t1 | AT1G20080 | 29.123 | 570 | 349 | 16 | 1 | 562 | 11 | 533 | 3.67e-66 | 224 |
| MS.gene80230.t1 | AT1G20080 | 29.123 | 570 | 349 | 16 | 1 | 562 | 11 | 533 | 3.67e-66 | 224 |
| MS.gene80230.t1 | AT1G20080 | 29.123 | 570 | 349 | 16 | 1 | 562 | 11 | 533 | 3.67e-66 | 224 |
| MS.gene80230.t1 | AT1G20080 | 29.123 | 570 | 349 | 16 | 1 | 562 | 11 | 533 | 3.67e-66 | 224 |
| MS.gene80230.t1 | AT3G61030 | 33.224 | 304 | 140 | 7 | 74 | 373 | 39 | 283 | 6.79e-39 | 149 |
| MS.gene80230.t1 | AT3G60950 | 33.770 | 305 | 144 | 8 | 74 | 373 | 39 | 290 | 4.33e-38 | 149 |
| MS.gene80230.t1 | AT5G04220 | 28.198 | 344 | 205 | 10 | 231 | 563 | 4 | 316 | 1.45e-33 | 130 |
| MS.gene80230.t1 | AT5G11100 | 72.464 | 69 | 19 | 0 | 1 | 69 | 1 | 69 | 2.27e-28 | 108 |
| MS.gene80230.t1 | AT2G21010 | 28.571 | 287 | 161 | 7 | 285 | 562 | 1 | 252 | 3.29e-23 | 99.8 |
| MS.gene80230.t1 | AT3G14590 | 25.982 | 331 | 213 | 13 | 66 | 371 | 61 | 384 | 1.54e-17 | 87.0 |
| MS.gene80230.t1 | AT3G14590 | 25.982 | 331 | 213 | 13 | 66 | 371 | 30 | 353 | 2.16e-17 | 86.3 |
| MS.gene80230.t1 | AT1G53590 | 25.455 | 330 | 215 | 12 | 66 | 371 | 61 | 383 | 2.18e-17 | 86.3 |
| MS.gene80230.t1 | AT3G14590 | 25.982 | 331 | 213 | 13 | 66 | 371 | 16 | 339 | 2.73e-17 | 85.9 |
| MS.gene80230.t1 | AT5G47710 | 38.710 | 93 | 52 | 4 | 446 | 537 | 6 | 94 | 7.14e-11 | 61.6 |
| MS.gene80230.t1 | AT5G47710 | 35.417 | 96 | 57 | 3 | 264 | 359 | 3 | 93 | 8.17e-11 | 61.2 |
| MS.gene80230.t1 | AT5G47710 | 38.710 | 93 | 52 | 4 | 446 | 537 | 6 | 94 | 7.14e-11 | 61.6 |
| MS.gene80230.t1 | AT5G47710 | 35.417 | 96 | 57 | 3 | 264 | 359 | 3 | 93 | 8.17e-11 | 61.2 |
| MS.gene80230.t1 | AT5G47710 | 38.710 | 93 | 52 | 4 | 446 | 537 | 6 | 94 | 7.14e-11 | 61.6 |
| MS.gene80230.t1 | AT5G47710 | 35.417 | 96 | 57 | 3 | 264 | 359 | 3 | 93 | 8.17e-11 | 61.2 |
| MS.gene80230.t1 | AT5G47710 | 38.710 | 93 | 52 | 4 | 446 | 537 | 6 | 94 | 7.14e-11 | 61.6 |
| MS.gene80230.t1 | AT5G47710 | 35.417 | 96 | 57 | 3 | 264 | 359 | 3 | 93 | 8.17e-11 | 61.2 |
Find 129 sgRNAs with CRISPR-Local
Find 398 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATACGACGAAACATTTATTT+TGG | 0.171076 | 3.4:-92958500 | MS.gene80230:CDS |
| GTAGCTGAATTCCCTGCTTT+TGG | 0.202294 | 3.4:-92962947 | MS.gene80230:CDS |
| GTTTCATAATACAGTTAAAT+TGG | 0.210321 | 3.4:-92964498 | MS.gene80230:intron |
| TTATCAAATAAAGATATAAT+TGG | 0.225221 | 3.4:-92960633 | MS.gene80230:CDS |
| TAGATGCAAATTAATCTTTC+CGG | 0.225840 | 3.4:+92958465 | None:intergenic |
| CTATAATCTCCTGGTATAAT+TGG | 0.227622 | 3.4:+92961423 | None:intergenic |
| CCCTATATTTGTTATCTTTG+TGG | 0.227841 | 3.4:+92960251 | None:intergenic |
| TAAGGATGTATGGTTGAAAT+TGG | 0.248081 | 3.4:-92960290 | MS.gene80230:CDS |
| CATCACTAGCTCCATTCTTC+AGG | 0.250724 | 3.4:+92959948 | None:intergenic |
| ACATGCTAATTGTTGAACTA+TGG | 0.255342 | 3.4:-92959415 | MS.gene80230:CDS |
| TACCAGGTTCAAGTTCCTTT+AGG | 0.260530 | 3.4:+92960317 | None:intergenic |
| TTCCAACGGGTTTCAATTCT+AGG | 0.261515 | 3.4:+92960688 | None:intergenic |
| ACCAGGTTCAAGTTCCTTTA+GGG | 0.268256 | 3.4:+92960318 | None:intergenic |
| TCAAAGTGCTCATTCCATAT+TGG | 0.273324 | 3.4:+92960439 | None:intergenic |
| CAAAGTGCTCATTCCATATT+GGG | 0.278817 | 3.4:+92960440 | None:intergenic |
| ATTCAAGCAGCTGAGCTTAT+TGG | 0.281979 | 3.4:-92960355 | MS.gene80230:CDS |
| CCACAAAGATAACAAATATA+GGG | 0.305796 | 3.4:-92960251 | MS.gene80230:CDS |
| ATAGCCATTTAGAAAAGATT+TGG | 0.318550 | 3.4:-92964471 | MS.gene80230:CDS |
| ATCCAAGCGTCGCACAGATT+TGG | 0.327002 | 3.4:-92964870 | MS.gene80230:intron |
| GAAAGATTAATTTGCATCTA+AGG | 0.332680 | 3.4:-92958462 | MS.gene80230:CDS |
| CAAGTTCCTTTAGGGAAACT+TGG | 0.335226 | 3.4:+92960326 | None:intergenic |
| TTCATCATCAAAGATTCTTA+TGG | 0.339464 | 3.4:+92960381 | None:intergenic |
| ACAACCAGTTGAACCCAATA+TGG | 0.348413 | 3.4:-92960453 | MS.gene80230:CDS |
| CAATTATACCAGGAGATTAT+AGG | 0.351516 | 3.4:-92961422 | MS.gene80230:intron |
| TCCACAAAGATAACAAATAT+AGG | 0.354043 | 3.4:-92960252 | MS.gene80230:CDS |
| GGCCTATACTGTTCAAGAAT+TGG | 0.356321 | 3.4:+92964279 | None:intergenic |
| AAAGTGTTCTCAACTCCATA+TGG | 0.366653 | 3.4:+92960019 | None:intergenic |
| GAGCTATTGTATTGCCCATA+TGG | 0.372521 | 3.4:-92960034 | MS.gene80230:CDS |
| TCAAATGTTTGATTCCATAC+TGG | 0.372705 | 3.4:+92959464 | None:intergenic |
| GACACTAACCAAGGTCATAT+TGG | 0.373356 | 3.4:-92958530 | MS.gene80230:CDS |
| TTCAATGCAAGGACAACAAA+TGG | 0.375294 | 3.4:+92959797 | None:intergenic |
| AACTCCATTGTCACTCCATT+GGG | 0.380310 | 3.4:+92963894 | None:intergenic |
| CATTCCATATTGGGTTCAAC+TGG | 0.381825 | 3.4:+92960449 | None:intergenic |
| ATGATCATTGGTATTATGAT+TGG | 0.399591 | 3.4:-92964935 | MS.gene80230:CDS |
| TTAATGGCAAGAACAATATC+CGG | 0.399613 | 3.4:+92963849 | None:intergenic |
| TATTATGATTGGTATCATAT+TGG | 0.401913 | 3.4:-92964924 | MS.gene80230:CDS |
| CATACATCCTTAACTTTACC+AGG | 0.405449 | 3.4:+92960301 | None:intergenic |
| ATGAAACTCTAAATCCAGTA+TGG | 0.406146 | 3.4:-92959478 | MS.gene80230:CDS |
| CTTGCCATTAAAACCAAAGT+TGG | 0.415427 | 3.4:-92963837 | MS.gene80230:CDS |
| CTATGGGATCATGACACCTT+TGG | 0.415441 | 3.4:-92959398 | MS.gene80230:CDS |
| TCAATTATTGAAGAGGATAG+TGG | 0.416942 | 3.4:-92963918 | MS.gene80230:CDS |
| TTGCCCATAAAATCTACTAT+TGG | 0.417309 | 3.4:+92959827 | None:intergenic |
| GTTCTACGAACAGAAAGCTT+TGG | 0.431212 | 3.4:-92962609 | MS.gene80230:intron |
| TACCAAATCTGTGCGACGCT+TGG | 0.433233 | 3.4:+92964868 | None:intergenic |
| CTGGTAAAGTTAAGGATGTA+TGG | 0.443093 | 3.4:-92960300 | MS.gene80230:CDS |
| TTCATCAGCGGCATGATCAT+TGG | 0.447948 | 3.4:-92964947 | MS.gene80230:CDS |
| AGTGTAGCTCCACAATTTAC+CGG | 0.448167 | 3.4:-92964213 | MS.gene80230:intron |
| ACTTGAACCTGGTAAAGTTA+AGG | 0.452167 | 3.4:-92960308 | MS.gene80230:CDS |
| TATCAAATAAAGATATAATT+GGG | 0.455578 | 3.4:-92960632 | MS.gene80230:CDS |
| ATCACTAGCTCCATTCTTCA+GGG | 0.457632 | 3.4:+92959949 | None:intergenic |
| AGTGAGTAATCACGGACAAA+AGG | 0.459563 | 3.4:+92959989 | None:intergenic |
| AAACATACGGCTCCAAAAGC+AGG | 0.465709 | 3.4:+92962935 | None:intergenic |
| TATGTAGGCAGCGACAGAAT+TGG | 0.465868 | 3.4:-92964319 | MS.gene80230:intron |
| AGGTAGTACAATACCAACTT+TGG | 0.474835 | 3.4:+92963824 | None:intergenic |
| TTTACTCTTAAGGTTGTTGG+TGG | 0.476146 | 3.4:-92962584 | MS.gene80230:CDS |
| AAACTCCATTGTCACTCCAT+TGG | 0.478756 | 3.4:+92963893 | None:intergenic |
| CATGCTAATTGTTGAACTAT+GGG | 0.481135 | 3.4:-92959414 | MS.gene80230:CDS |
| TTTGACTTCGTTGTGGAGGA+TGG | 0.483304 | 3.4:-92959446 | MS.gene80230:CDS |
| CCATCGAAGACTCTATAACT+TGG | 0.489210 | 3.4:-92961464 | MS.gene80230:CDS |
| TAATGGCAAGAACAATATCC+GGG | 0.489769 | 3.4:+92963850 | None:intergenic |
| TAAATTACCTCATTGACAAA+TGG | 0.491429 | 3.4:+92964448 | None:intergenic |
| AGGAATTTCAATTATTGAAG+AGG | 0.491655 | 3.4:-92963925 | MS.gene80230:CDS |
| ATAAGAATCTTTGATGATGA+AGG | 0.498472 | 3.4:-92960379 | MS.gene80230:CDS |
| CGTACAAATACCATAGCAAA+AGG | 0.499422 | 3.4:+92960600 | None:intergenic |
| TTGTGCCCAAGTTTCCCTAA+AGG | 0.500087 | 3.4:-92960332 | MS.gene80230:CDS |
| TGGAGCTAGTGATGGAGAGG+AGG | 0.501710 | 3.4:-92959939 | MS.gene80230:CDS |
| TTTGAGAAGACCCTGAAGAA+TGG | 0.503236 | 3.4:-92959959 | MS.gene80230:CDS |
| TCAATGCAAGGACAACAAAT+GGG | 0.504694 | 3.4:+92959798 | None:intergenic |
| GGTGATATTTCAACCTTACC+AGG | 0.504767 | 3.4:-92962563 | MS.gene80230:CDS |
| GGACTCCACAACACAAGTAT+CGG | 0.506214 | 3.4:-92958438 | MS.gene80230:CDS |
| GGTTCCCGATACTTGTGTTG+TGG | 0.508001 | 3.4:+92958433 | None:intergenic |
| GAATGGAGCTAGTGATGGAG+AGG | 0.510831 | 3.4:-92959942 | MS.gene80230:CDS |
| CAAATCTAACCGGTAAATTG+TGG | 0.511215 | 3.4:+92964204 | None:intergenic |
| CAATTATTGAAGAGGATAGT+GGG | 0.511457 | 3.4:-92963917 | MS.gene80230:CDS |
| TCCCTAAAGGAACTTGAACC+TGG | 0.513783 | 3.4:-92960319 | MS.gene80230:CDS |
| TGGTATTGTACTACCTGTGC+AGG | 0.515210 | 3.4:-92963817 | MS.gene80230:intron |
| AACCTAGAATTGAAACCCGT+TGG | 0.515395 | 3.4:-92960690 | MS.gene80230:CDS |
| CATGCAGTGGGATGGTAACC+CGG | 0.523776 | 3.4:-92963868 | MS.gene80230:CDS |
| AAAAGCAACGTGATTGTAAG+AGG | 0.527447 | 3.4:-92959887 | MS.gene80230:CDS |
| TTCCCCTTCCAATATGACCT+TGG | 0.528006 | 3.4:+92958522 | None:intergenic |
| GATTTGGCCATTTGTCAATG+AGG | 0.532036 | 3.4:-92964455 | MS.gene80230:intron |
| AGGGGTATCTGAAGCTATTG+AGG | 0.532324 | 3.4:-92962543 | MS.gene80230:intron |
| GACTCCACAACACAAGTATC+GGG | 0.532416 | 3.4:-92958437 | MS.gene80230:CDS |
| TTTACATCTAGTGTTCCAAC+GGG | 0.536494 | 3.4:+92960675 | None:intergenic |
| TATTTGTGAGTTACCTGCAC+AGG | 0.537898 | 3.4:+92963804 | None:intergenic |
| GTGAGTAATCACGGACAAAA+GGG | 0.539859 | 3.4:+92959990 | None:intergenic |
| AACATTTGACTTCGTTGTGG+AGG | 0.540606 | 3.4:-92959450 | MS.gene80230:CDS |
| AAGTTCCTTTAGGGAAACTT+GGG | 0.541025 | 3.4:+92960327 | None:intergenic |
| AAGTGTTCTCAACTCCATAT+GGG | 0.543902 | 3.4:+92960020 | None:intergenic |
| ATTGGTATGACTTTACGTAC+TGG | 0.546596 | 3.4:+92961441 | None:intergenic |
| ACTAGATGTAAAACTAGTGC+AGG | 0.552199 | 3.4:-92960664 | MS.gene80230:CDS |
| CTGAAGAATGGAGCTAGTGA+TGG | 0.552780 | 3.4:-92959947 | MS.gene80230:CDS |
| AGCTTCAGATACCCCTGGTA+AGG | 0.556357 | 3.4:+92962550 | None:intergenic |
| AACCAAGGTCATATTGGAAG+GGG | 0.557907 | 3.4:-92958524 | MS.gene80230:CDS |
| TCAACCAACATAGGTGCACT+TGG | 0.569224 | 3.4:-92960056 | MS.gene80230:intron |
| CTAACCAAGGTCATATTGGA+AGG | 0.572168 | 3.4:-92958526 | MS.gene80230:CDS |
| AAGAGGTGTCACCTTTCCAA+AGG | 0.577810 | 3.4:+92959382 | None:intergenic |
| CACAAAGATAACAAATATAG+GGG | 0.582883 | 3.4:-92960250 | MS.gene80230:CDS |
| CTTCAGGGTCTTCTCAAACG+TGG | 0.584476 | 3.4:+92959964 | None:intergenic |
| AGATTAATTTGCATCTAAGG+TGG | 0.585512 | 3.4:-92958459 | MS.gene80230:CDS |
| AACCAATTCTTGAACAGTAT+AGG | 0.590824 | 3.4:-92964281 | MS.gene80230:CDS |
| TCAAACATTTGACTTCGTTG+TGG | 0.592573 | 3.4:-92959453 | MS.gene80230:CDS |
| AGCTACACTACCGAGTGTAA+AGG | 0.597083 | 3.4:+92964227 | None:intergenic |
| AGATAACAAATATAGGGGTG+AGG | 0.599072 | 3.4:-92960245 | MS.gene80230:intron |
| AACATACGGCTCCAAAAGCA+GGG | 0.602168 | 3.4:+92962936 | None:intergenic |
| TCAATAGCTTCAGATACCCC+TGG | 0.603196 | 3.4:+92962545 | None:intergenic |
| TAACCAAGGTCATATTGGAA+GGG | 0.610238 | 3.4:-92958525 | MS.gene80230:CDS |
| TGGGCCCAATGGAGTGACAA+TGG | 0.612832 | 3.4:-92963898 | MS.gene80230:CDS |
| TCTTGAACAGTATAGGCCAG+TGG | 0.616798 | 3.4:-92964274 | MS.gene80230:CDS |
| GAAGAGGATAGTGGGCCCAA+TGG | 0.618971 | 3.4:-92963909 | MS.gene80230:CDS |
| GTGAGAGAAGACAAAACCAC+TGG | 0.619356 | 3.4:+92964258 | None:intergenic |
| GCAGGGAATTCAGCTACAAG+AGG | 0.621383 | 3.4:+92962953 | None:intergenic |
| CAATGGAGTTTGACATGCAG+TGG | 0.622659 | 3.4:-92963881 | MS.gene80230:CDS |
| GATTGTAAGAGGAGTTCTAT+CGG | 0.623571 | 3.4:-92959876 | MS.gene80230:CDS |
| GGATCATGACACCTTTGGAA+AGG | 0.625093 | 3.4:-92959393 | MS.gene80230:intron |
| TGAGTAAATACCACCCATGA+CGG | 0.628185 | 3.4:+92964618 | None:intergenic |
| ACGTGGTTAGTGAGTAATCA+CGG | 0.632160 | 3.4:+92959981 | None:intergenic |
| AGACAATAGCAAAGTTTGCG+AGG | 0.643310 | 3.4:-92964686 | MS.gene80230:CDS |
| GTGATATTTCAACCTTACCA+GGG | 0.644897 | 3.4:-92962562 | MS.gene80230:CDS |
| CCAAGTTATAGAGTCTTCGA+TGG | 0.645168 | 3.4:+92961464 | None:intergenic |
| GAGTTTGACATGCAGTGGGA+TGG | 0.668125 | 3.4:-92963876 | MS.gene80230:CDS |
| TGATATTTCAACCTTACCAG+GGG | 0.668860 | 3.4:-92962561 | MS.gene80230:CDS |
| ATAACTCAATATCATCATCA+CGG | 0.671798 | 3.4:-92959913 | MS.gene80230:CDS |
| GTTTGCGAGGATGACAGTGG+AGG | 0.672019 | 3.4:-92964673 | MS.gene80230:CDS |
| AATGGAGTTTGACATGCAGT+GGG | 0.687587 | 3.4:-92963880 | MS.gene80230:CDS |
| AAAGTCATACCAATTATACC+AGG | 0.699575 | 3.4:-92961432 | MS.gene80230:CDS |
| AAAGTTTGCGAGGATGACAG+TGG | 0.718765 | 3.4:-92964676 | MS.gene80230:CDS |
| AGTGATCATGACACTAACCA+AGG | 0.719607 | 3.4:-92958539 | MS.gene80230:CDS |
| ACTCAATATCATCATCACGG+AGG | 0.757668 | 3.4:-92959910 | MS.gene80230:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAATTAATTTAAAAATA+TGG | + | chr3.4:92959773-92959792 | None:intergenic | 0.0% |
| !! | AAATAAATAAATAATAAATA+GGG | + | chr3.4:92962851-92962870 | None:intergenic | 0.0% |
| !! | AATATTTATATAATATATAT+TGG | + | chr3.4:92964489-92964508 | None:intergenic | 0.0% |
| !! | AAATTAATTTAAAAATATGG+AGG | + | chr3.4:92959770-92959789 | None:intergenic | 10.0% |
| !! | AATTAATTTAAAAATATGGA+GGG | + | chr3.4:92959769-92959788 | None:intergenic | 10.0% |
| !! | ATATATAAATTTGTCTAATA+AGG | + | chr3.4:92959906-92959925 | None:intergenic | 10.0% |
| !! | ATGAAAATTGAAATATTTAT+AGG | - | chr3.4:92960273-92960292 | MS.gene80230:CDS | 10.0% |
| !! | GATATGTTAAAATATAAAAT+GGG | - | chr3.4:92961521-92961540 | MS.gene80230:intron | 10.0% |
| !! | TATCAAATAAAGATATAATT+GGG | - | chr3.4:92962750-92962769 | MS.gene80230:intron | 10.0% |
| !! | TCAATTAAAAAAAAACTAAA+AGG | - | chr3.4:92961433-92961452 | MS.gene80230:CDS | 10.0% |
| !! | TGAAAATTGAAATATTTATA+GGG | - | chr3.4:92960274-92960293 | MS.gene80230:CDS | 10.0% |
| !! | TTATCAAATAAAGATATAAT+TGG | - | chr3.4:92962749-92962768 | MS.gene80230:intron | 10.0% |
| !! | TTTATATAGGTAAAAAATAT+TGG | - | chr3.4:92960375-92960394 | MS.gene80230:CDS | 10.0% |
| !!! | AAAATAATTCAAAGTTTTAA+AGG | - | chr3.4:92960104-92960123 | MS.gene80230:intron | 10.0% |
| !!! | ATCATTGAATATTATTTTTT+TGG | - | chr3.4:92962556-92962575 | MS.gene80230:CDS | 10.0% |
| !!! | ATCTATAACAAAATTTATTT+TGG | + | chr3.4:92958850-92958869 | None:intergenic | 10.0% |
| !!! | ATGAAATTTGAAATATTTAT+AGG | + | chr3.4:92959654-92959673 | None:intergenic | 10.0% |
| !!! | TATATATATTTTATTATGTG+AGG | - | chr3.4:92958991-92959010 | MS.gene80230:intron | 10.0% |
| !!! | TGAAATTTGAAATATTTATA+GGG | + | chr3.4:92959653-92959672 | None:intergenic | 10.0% |
| !!! | TTGTTAAAATTTAAAATTGA+GGG | + | chr3.4:92960317-92960336 | None:intergenic | 10.0% |
| !!! | TTTTTTTTTTTATCAAGTTT+GGG | - | chr3.4:92958968-92958987 | MS.gene80230:intron | 10.0% |
| !!! | TTTTTTTTTTTTATCAAGTT+TGG | - | chr3.4:92958967-92958986 | MS.gene80230:intron | 10.0% |
| !! | AATAGAAATATTGAACTTAA+AGG | + | chr3.4:92960936-92960955 | None:intergenic | 15.0% |
| !! | ATGAAATAGAAATAATAGAA+TGG | + | chr3.4:92960346-92960365 | None:intergenic | 15.0% |
| !! | CAAACTAATATTATTTATTC+AGG | - | chr3.4:92961880-92961899 | MS.gene80230:intron | 15.0% |
| !! | GCAAATCATAATATAATTAT+TGG | - | chr3.4:92962895-92962914 | MS.gene80230:intron | 15.0% |
| !! | GGATATGTTAAAATATAAAA+TGG | - | chr3.4:92961520-92961539 | MS.gene80230:intron | 15.0% |
| !! | TAAAAACTAAAATATTGCAA+AGG | + | chr3.4:92963668-92963687 | None:intergenic | 15.0% |
| !! | TTATATTAAAGTTAATACAG+TGG | + | chr3.4:92962098-92962117 | None:intergenic | 15.0% |
| !! | TTGAAATTATAAAAACTGAA+TGG | + | chr3.4:92960967-92960986 | None:intergenic | 15.0% |
| !!! | AAAAAAAAATTAGCAAGTTT+TGG | - | chr3.4:92959685-92959704 | MS.gene80230:intron | 15.0% |
| !!! | ATATTTTCTTTTCTAATATG+AGG | + | chr3.4:92960515-92960534 | None:intergenic | 15.0% |
| !!! | ATTAAGTACAATTTTTTCTT+TGG | - | chr3.4:92962186-92962205 | MS.gene80230:intron | 15.0% |
| !!! | ATTTGGATATTTTATATACA+TGG | - | chr3.4:92961499-92961518 | MS.gene80230:intron | 15.0% |
| !!! | GTTGTTAAAATTTAAAATTG+AGG | + | chr3.4:92960318-92960337 | None:intergenic | 15.0% |
| !!! | TATAACAAAATTTATTTTGG+AGG | + | chr3.4:92958847-92958866 | None:intergenic | 15.0% |
| !!! | TATGTAATTAGTATTTTCAA+TGG | + | chr3.4:92961664-92961683 | None:intergenic | 15.0% |
| !!! | TTTTGAGGTTAAATAATTTT+TGG | - | chr3.4:92959626-92959645 | MS.gene80230:intron | 15.0% |
| !! | AAATACTAATTACATATCCA+AGG | - | chr3.4:92961668-92961687 | MS.gene80230:intron | 20.0% |
| !! | AAGATCATAAATATTGTTAG+AGG | - | chr3.4:92961733-92961752 | MS.gene80230:intron | 20.0% |
| !! | ACAATAATTAATGTATTCTC+AGG | - | chr3.4:92963875-92963894 | MS.gene80230:CDS | 20.0% |
| !! | ATTACTATGAAATGAAATAG+AGG | + | chr3.4:92958587-92958606 | None:intergenic | 20.0% |
| !! | ATTTGACCAAATAAAATCAA+AGG | + | chr3.4:92960901-92960920 | None:intergenic | 20.0% |
| !! | GCAAAATTCATTACAAAAAA+TGG | - | chr3.4:92959310-92959329 | MS.gene80230:intron | 20.0% |
| !! | GTAAAAAGTTTCAACATAAA+AGG | + | chr3.4:92958816-92958835 | None:intergenic | 20.0% |
| !! | GTAACGAAAAACATATATAT+GGG | - | chr3.4:92960215-92960234 | MS.gene80230:intron | 20.0% |
| !! | GTTGTGACAAAAAATATTTA+AGG | + | chr3.4:92959712-92959731 | None:intergenic | 20.0% |
| !! | GTTTCATAATACAGTTAAAT+TGG | - | chr3.4:92958884-92958903 | MS.gene80230:intron | 20.0% |
| !! | TAAAAAATATTGGATTCACT+GGG | - | chr3.4:92960385-92960404 | MS.gene80230:CDS | 20.0% |
| !! | TAACGAAAAACATATATATG+GGG | - | chr3.4:92960216-92960235 | MS.gene80230:intron | 20.0% |
| !! | TAGAAATAATAGAATGGTAA+AGG | + | chr3.4:92960340-92960359 | None:intergenic | 20.0% |
| !! | TATTATGATTGGTATCATAT+TGG | - | chr3.4:92958458-92958477 | MS.gene80230:CDS | 20.0% |
| !! | TGCAATATGAAAATATATGT+AGG | - | chr3.4:92959048-92959067 | MS.gene80230:intron | 20.0% |
| !! | TGTATCTAGATAATTATGTT+TGG | - | chr3.4:92961265-92961284 | MS.gene80230:intron | 20.0% |
| !! | TGTGTAATAGAATAATGATT+AGG | - | chr3.4:92961586-92961605 | MS.gene80230:intron | 20.0% |
| !! | TTATGATCTTCATAAGATTA+GGG | + | chr3.4:92961723-92961742 | None:intergenic | 20.0% |
| !! | TTGATTTATAATGTTGCTAA+TGG | - | chr3.4:92961196-92961215 | MS.gene80230:intron | 20.0% |
| !! | TTTATGATCTTCATAAGATT+AGG | + | chr3.4:92961724-92961743 | None:intergenic | 20.0% |
| !!! | AATAATATCGTATTGCTTTT+CGG | + | chr3.4:92962009-92962028 | None:intergenic | 20.0% |
| !!! | AGTTTAATTTGATCAATTAC+AGG | - | chr3.4:92963692-92963711 | MS.gene80230:intron | 20.0% |
| !!! | ATATTTTTTGTCACAACTTT+TGG | - | chr3.4:92959715-92959734 | MS.gene80230:intron | 20.0% |
| !!! | ATGTTTTTCTCTAAGAAAAA+AGG | - | chr3.4:92960464-92960483 | MS.gene80230:intron | 20.0% |
| !!! | ATTATGTTTGGTGTTATAAA+CGG | - | chr3.4:92961277-92961296 | MS.gene80230:intron | 20.0% |
| !!! | ATTTTATTAACTTACGTGTT+CGG | - | chr3.4:92958642-92958661 | MS.gene80230:intron | 20.0% |
| !!! | ATTTTGTTTTAAACTAAGAC+AGG | + | chr3.4:92961165-92961184 | None:intergenic | 20.0% |
| !!! | CATATATATGTTTTTCGTTA+CGG | + | chr3.4:92960216-92960235 | None:intergenic | 20.0% |
| !!! | CATTTTTTAATTGAGTTTGA+TGG | + | chr3.4:92961065-92961084 | None:intergenic | 20.0% |
| !!! | GGTTTTTATGAATCTATTAT+AGG | - | chr3.4:92958670-92958689 | MS.gene80230:intron | 20.0% |
| !!! | GTTATTCCTTTGATTTTATT+TGG | - | chr3.4:92960892-92960911 | MS.gene80230:intron | 20.0% |
| !!! | TACAATTATTTTACTGGTTT+TGG | + | chr3.4:92962825-92962844 | None:intergenic | 20.0% |
| !!! | TCATTGTAACTTGTTTATAT+AGG | - | chr3.4:92960362-92960381 | MS.gene80230:CDS | 20.0% |
| !!! | TTACCAATAGTAGATTTTAT+GGG | - | chr3.4:92963552-92963571 | MS.gene80230:intron | 20.0% |
| !!! | TTGAGGGTTAAATAATTTTT+TGG | + | chr3.4:92960301-92960320 | None:intergenic | 20.0% |
| !!! | TTTCTTTTGTAGGAAAAAAT+GGG | - | chr3.4:92964817-92964836 | MS.gene80230:intron | 20.0% |
| !!! | TTTTCTTAGAGAAAAACATA+CGG | + | chr3.4:92960463-92960482 | None:intergenic | 20.0% |
| !!! | TTTTCTTTTGTAGGAAAAAA+TGG | - | chr3.4:92964816-92964835 | MS.gene80230:intron | 20.0% |
| !!! | TTTTTTCCTACAAAAGAAAA+AGG | + | chr3.4:92964816-92964835 | None:intergenic | 20.0% |
| ! | AAAAAATATTGGATTCACTG+GGG | - | chr3.4:92960386-92960405 | MS.gene80230:CDS | 25.0% |
| ! | AAAAACTAAAAGGACTAATC+TGG | - | chr3.4:92961443-92961462 | MS.gene80230:CDS | 25.0% |
| ! | AAAGAAGTTATGCAAGTTAA+TGG | - | chr3.4:92964620-92964639 | MS.gene80230:CDS | 25.0% |
| ! | AATGCTATCAAGTAAACATA+AGG | + | chr3.4:92962619-92962638 | None:intergenic | 25.0% |
| ! | AGGAATTTCAATTATTGAAG+AGG | - | chr3.4:92959457-92959476 | MS.gene80230:CDS | 25.0% |
| ! | AGTAAGACTTATGATGTTAT+TGG | - | chr3.4:92963635-92963654 | MS.gene80230:intron | 25.0% |
| ! | ATAAAACTAACTTCGATGAA+TGG | - | chr3.4:92960636-92960655 | MS.gene80230:CDS | 25.0% |
| ! | ATAACATCATAAGTCTTACT+CGG | + | chr3.4:92963635-92963654 | None:intergenic | 25.0% |
| ! | ATAACTCAATATCATCATCA+CGG | - | chr3.4:92963469-92963488 | MS.gene80230:intron | 25.0% |
| ! | ATAACTTCTTTGCAAAAATG+AGG | + | chr3.4:92964611-92964630 | None:intergenic | 25.0% |
| ! | ATAGCCATTTAGAAAAGATT+TGG | - | chr3.4:92958911-92958930 | MS.gene80230:intron | 25.0% |
| ! | ATATGTTGCTCAAAATGTAT+AGG | - | chr3.4:92959437-92959456 | MS.gene80230:CDS | 25.0% |
| ! | ATGATCATTGGTATTATGAT+TGG | - | chr3.4:92958447-92958466 | MS.gene80230:CDS | 25.0% |
| ! | ATTATAGAAATAAACCCACT+TGG | + | chr3.4:92960065-92960084 | None:intergenic | 25.0% |
| ! | ATTTGGTCAAATGTATTATG+AGG | - | chr3.4:92960909-92960928 | MS.gene80230:intron | 25.0% |
| ! | CACAAAGATAACAAATATAG+GGG | - | chr3.4:92963132-92963151 | MS.gene80230:intron | 25.0% |
| ! | CATGTGATTATGATTGAATT+GGG | - | chr3.4:92961225-92961244 | MS.gene80230:intron | 25.0% |
| ! | CCACAAAGATAACAAATATA+GGG | - | chr3.4:92963131-92963150 | MS.gene80230:intron | 25.0% |
| ! | CGTAACGAAAAACATATATA+TGG | - | chr3.4:92960214-92960233 | MS.gene80230:intron | 25.0% |
| ! | GTAAAAAATATTGGATTCAC+TGG | - | chr3.4:92960384-92960403 | MS.gene80230:CDS | 25.0% |
| ! | GTAAGACTTATGATGTTATT+GGG | - | chr3.4:92963636-92963655 | MS.gene80230:intron | 25.0% |
| ! | GTTTATGTGAATTGTTAAGT+TGG | - | chr3.4:92961084-92961103 | MS.gene80230:intron | 25.0% |
| ! | TAAATTACCTCATTGACAAA+TGG | + | chr3.4:92958937-92958956 | None:intergenic | 25.0% |
| ! | TAAGACTTATGATGTTATTG+GGG | - | chr3.4:92963637-92963656 | MS.gene80230:intron | 25.0% |
| ! | TAATTTAAAAATATGGAGGG+TGG | + | chr3.4:92959766-92959785 | None:intergenic | 25.0% |
| ! | TAGATGCAAATTAATCTTTC+CGG | + | chr3.4:92964920-92964939 | None:intergenic | 25.0% |
| ! | TCAAATTTCACAAATCTAAC+CGG | + | chr3.4:92959191-92959210 | None:intergenic | 25.0% |
| ! | TCATGTGATTATGATTGAAT+TGG | - | chr3.4:92961224-92961243 | MS.gene80230:intron | 25.0% |
| ! | TCCACAAAGATAACAAATAT+AGG | - | chr3.4:92963130-92963149 | MS.gene80230:intron | 25.0% |
| ! | TTATAGAAATAAACCCACTT+GGG | + | chr3.4:92960064-92960083 | None:intergenic | 25.0% |
| ! | TTATATTATAACTAGCCAAC+TGG | + | chr3.4:92960683-92960702 | None:intergenic | 25.0% |
| ! | TTCATCATCAAAGATTCTTA+TGG | + | chr3.4:92963004-92963023 | None:intergenic | 25.0% |
| !! | ATACGACGAAACATTTATTT+TGG | - | chr3.4:92964882-92964901 | MS.gene80230:CDS | 25.0% |
| !! | CTTACCAATAGTAGATTTTA+TGG | - | chr3.4:92963551-92963570 | MS.gene80230:intron | 25.0% |
| !! | GCATGATTTTTATGACTTAA+AGG | + | chr3.4:92961026-92961045 | None:intergenic | 25.0% |
| !! | TACATGGTATTTTCATGAAT+CGG | - | chr3.4:92964768-92964787 | MS.gene80230:intron | 25.0% |
| !! | TATTTTATTATGTGAGGCTA+TGG | - | chr3.4:92958997-92959016 | MS.gene80230:intron | 25.0% |
| !! | TCAAATTAGTTCTTTATGTC+AGG | - | chr3.4:92960983-92961002 | MS.gene80230:intron | 25.0% |
| !! | TCTAAATTTTCAGCAAGTTT+TGG | + | chr3.4:92960243-92960262 | None:intergenic | 25.0% |
| !! | TGTTTTCCTTTTTCTTTTGT+AGG | - | chr3.4:92964807-92964826 | MS.gene80230:intron | 25.0% |
| !! | TTTTAGCATAAATGGAACAA+GGG | + | chr3.4:92964253-92964272 | None:intergenic | 25.0% |
| !! | TTTTATTAACTTACGTGTTC+GGG | - | chr3.4:92958643-92958662 | MS.gene80230:intron | 25.0% |
| !! | TTTTTATACCTATAATCTCC+TGG | + | chr3.4:92961971-92961990 | None:intergenic | 25.0% |
| !!! | AAAACTTGCTGAAAATTTAG+AGG | - | chr3.4:92960242-92960261 | MS.gene80230:intron | 25.0% |
| !!! | AAACTTGCTGAAAATTTAGA+GGG | - | chr3.4:92960243-92960262 | MS.gene80230:intron | 25.0% |
| !!! | AATACCAACTTTGGTTTTAA+TGG | + | chr3.4:92959552-92959571 | None:intergenic | 25.0% |
| !!! | ACAAGAAGTATCATAGAAAA+TGG | + | chr3.4:92958618-92958637 | None:intergenic | 25.0% |
| !!! | ATAAGAATCTTTGATGATGA+AGG | - | chr3.4:92963003-92963022 | MS.gene80230:intron | 25.0% |
| !!! | ATATTCATCTTGGTTTTACA+TGG | - | chr3.4:92964752-92964771 | MS.gene80230:intron | 25.0% |
| !!! | ATGAACAATAGTTTTGAAAG+CGG | + | chr3.4:92961124-92961143 | None:intergenic | 25.0% |
| !!! | GAAAGATTAATTTGCATCTA+AGG | - | chr3.4:92964920-92964939 | MS.gene80230:CDS | 25.0% |
| !!! | GATCGTATTGCATTTTATTT+TGG | - | chr3.4:92962519-92962538 | MS.gene80230:intron | 25.0% |
| !!! | GTTTTTAGTCATTGCTTTTA+AGG | + | chr3.4:92960194-92960213 | None:intergenic | 25.0% |
| !!! | TACATATCCAAGGTTTTATA+GGG | - | chr3.4:92961678-92961697 | MS.gene80230:intron | 25.0% |
| !!! | TTACATATCCAAGGTTTTAT+AGG | - | chr3.4:92961677-92961696 | MS.gene80230:intron | 25.0% |
| !!! | TTTCTGATTTTTTCAATGCA+AGG | + | chr3.4:92963599-92963618 | None:intergenic | 25.0% |
| AAAGGATTTCATGATGCATT+TGG | - | chr3.4:92961482-92961501 | MS.gene80230:CDS | 30.0% | |
| AAAGTCATACCAATTATACC+AGG | - | chr3.4:92961950-92961969 | MS.gene80230:intron | 30.0% | |
| AACCAATTCTTGAACAGTAT+AGG | - | chr3.4:92959101-92959120 | MS.gene80230:intron | 30.0% | |
| AAGTACATAAGTTTCTCGTA+TGG | - | chr3.4:92961808-92961827 | MS.gene80230:intron | 30.0% | |
| ACATGCTAATTGTTGAACTA+TGG | - | chr3.4:92963967-92963986 | MS.gene80230:intron | 30.0% | |
| AGGAACCTTAAAAGTTTGAT+TGG | - | chr3.4:92962053-92962072 | MS.gene80230:intron | 30.0% | |
| ATGAAACTCTAAATCCAGTA+TGG | - | chr3.4:92963904-92963923 | MS.gene80230:CDS | 30.0% | |
| ATGAGCTATGTTTCTTATGA+TGG | - | chr3.4:92964462-92964481 | MS.gene80230:CDS | 30.0% | |
| CAACAAAGTTAGAGGAAAAA+AGG | - | chr3.4:92961347-92961366 | MS.gene80230:intron | 30.0% | |
| CAATTATACCAGGAGATTAT+AGG | - | chr3.4:92961960-92961979 | MS.gene80230:intron | 30.0% | |
| CAATTATTGAAGAGGATAGT+GGG | - | chr3.4:92959465-92959484 | MS.gene80230:CDS | 30.0% | |
| CATGCTAATTGTTGAACTAT+GGG | - | chr3.4:92963968-92963987 | MS.gene80230:intron | 30.0% | |
| CCAAGATGAATATGATAAAG+TGG | + | chr3.4:92964745-92964764 | None:intergenic | 30.0% | |
| CCACTTTATCATATTCATCT+TGG | - | chr3.4:92964742-92964761 | MS.gene80230:intron | 30.0% | |
| CTATAATCTCCTGGTATAAT+TGG | + | chr3.4:92961962-92961981 | None:intergenic | 30.0% | |
| CTATGAAATGAAATAGAGGA+AGG | + | chr3.4:92958583-92958602 | None:intergenic | 30.0% | |
| GAACCTTAAAAGTTTGATTG+GGG | - | chr3.4:92962055-92962074 | MS.gene80230:intron | 30.0% | |
| GGAACCTTAAAAGTTTGATT+GGG | - | chr3.4:92962054-92962073 | MS.gene80230:intron | 30.0% | |
| GTTAATACAGTGGTTATCAT+TGG | + | chr3.4:92962088-92962107 | None:intergenic | 30.0% | |
| TAACATCATAAGTCTTACTC+GGG | + | chr3.4:92963634-92963653 | None:intergenic | 30.0% | |
| TAAGGATGTATGGTTGAAAT+TGG | - | chr3.4:92963092-92963111 | MS.gene80230:intron | 30.0% | |
| TAAGTGACCATTTAACATTG+AGG | + | chr3.4:92961318-92961337 | None:intergenic | 30.0% | |
| TAATGTTCTTTGTCTTCTCA+CGG | - | chr3.4:92963226-92963245 | MS.gene80230:intron | 30.0% | |
| TATCACTATTCACTAGTGAA+AGG | - | chr3.4:92962318-92962337 | MS.gene80230:intron | 30.0% | |
| TCAAATGTTTGATTCCATAC+TGG | + | chr3.4:92963921-92963940 | None:intergenic | 30.0% | |
| TCAATTATTGAAGAGGATAG+TGG | - | chr3.4:92959464-92959483 | MS.gene80230:CDS | 30.0% | |
| TCTTCATAAGATTAGGGAAA+AGG | + | chr3.4:92961717-92961736 | None:intergenic | 30.0% | |
| TGTTTCTTTATCATTGTGTG+TGG | - | chr3.4:92962870-92962889 | MS.gene80230:intron | 30.0% | |
| TTAATGGCAAGAACAATATC+CGG | + | chr3.4:92959536-92959555 | None:intergenic | 30.0% | |
| TTCAAGTAGACAAGTTTAAG+AGG | + | chr3.4:92964020-92964039 | None:intergenic | 30.0% | |
| TTCTTGCTAAGTTATGTTGT+AGG | - | chr3.4:92962033-92962052 | MS.gene80230:intron | 30.0% | |
| TTGATTGTTATCTTGGTTGT+TGG | - | chr3.4:92962488-92962507 | MS.gene80230:intron | 30.0% | |
| TTGCCCATAAAATCTACTAT+TGG | + | chr3.4:92963558-92963577 | None:intergenic | 30.0% | |
| TTTATTAACTTACGTGTTCG+GGG | - | chr3.4:92958644-92958663 | MS.gene80230:intron | 30.0% | |
| ! | AATAGTAGATTTTATGGGCA+AGG | - | chr3.4:92963557-92963576 | MS.gene80230:intron | 30.0% |
| ! | AATTGAGTTTGATGGTAAGA+GGG | + | chr3.4:92961057-92961076 | None:intergenic | 30.0% |
| ! | ACATTTTCAACCTTTACACT+CGG | - | chr3.4:92959145-92959164 | MS.gene80230:intron | 30.0% |
| ! | ATCTTGTTATCAACCAACAT+AGG | - | chr3.4:92963317-92963336 | MS.gene80230:intron | 30.0% |
| ! | ATGGCCAAATCTTTTCTAAA+TGG | + | chr3.4:92958918-92958937 | None:intergenic | 30.0% |
| ! | ATTTTGGATGATGCTAAATC+CGG | - | chr3.4:92964898-92964917 | MS.gene80230:CDS | 30.0% |
| ! | GATTTTACTCTTAAGGTTGT+TGG | - | chr3.4:92960795-92960814 | MS.gene80230:intron | 30.0% |
| ! | GCATTTCCCAATTTTCTTTA+TGG | - | chr3.4:92962230-92962249 | MS.gene80230:intron | 30.0% |
| ! | TAATTGAGTTTGATGGTAAG+AGG | + | chr3.4:92961058-92961077 | None:intergenic | 30.0% |
| ! | TCCAAATTTTTATCCGTCAT+GGG | - | chr3.4:92958751-92958770 | MS.gene80230:intron | 30.0% |
| ! | TCCCAATTTTCTTTATGGTT+GGG | - | chr3.4:92962235-92962254 | MS.gene80230:intron | 30.0% |
| ! | TTAGGCGTAGATAAGTTTTA+TGG | - | chr3.4:92961604-92961623 | MS.gene80230:intron | 30.0% |
| ! | TTCCCAATTTTCTTTATGGT+TGG | - | chr3.4:92962234-92962253 | MS.gene80230:intron | 30.0% |
| !! | AGATTAATTTGCATCTAAGG+TGG | - | chr3.4:92964923-92964942 | MS.gene80230:CDS | 30.0% |
| !! | ATGTGAATTGTTAAGTTGGT+TGG | - | chr3.4:92961088-92961107 | MS.gene80230:intron | 30.0% |
| !! | CCCTATATTTGTTATCTTTG+TGG | + | chr3.4:92963134-92963153 | None:intergenic | 30.0% |
| !! | GACTCAAAGCATTAATTTTG+AGG | - | chr3.4:92959611-92959630 | MS.gene80230:intron | 30.0% |
| !! | GGGACTTACAATTATTTTAC+TGG | + | chr3.4:92962831-92962850 | None:intergenic | 30.0% |
| !! | GTTTTAGCATAAATGGAACA+AGG | + | chr3.4:92964254-92964273 | None:intergenic | 30.0% |
| !! | TATGTTGGTTGATAACAAGA+TGG | + | chr3.4:92963318-92963337 | None:intergenic | 30.0% |
| !!! | AGCTTTGGATTTTACTCTTA+AGG | - | chr3.4:92960788-92960807 | MS.gene80230:intron | 30.0% |
| AAAAGCAACGTGATTGTAAG+AGG | - | chr3.4:92963495-92963514 | MS.gene80230:intron | 35.0% | |
| AAGTGTTCTCAACTCCATAT+GGG | + | chr3.4:92963365-92963384 | None:intergenic | 35.0% | |
| ACTTGAACCTGGTAAAGTTA+AGG | - | chr3.4:92963074-92963093 | MS.gene80230:intron | 35.0% | |
| AGATAACAAATATAGGGGTG+AGG | - | chr3.4:92963137-92963156 | MS.gene80230:intron | 35.0% | |
| AGCCCAACCATAAAGAAAAT+TGG | + | chr3.4:92962240-92962259 | None:intergenic | 35.0% | |
| AGGTAGTACAATACCAACTT+TGG | + | chr3.4:92959561-92959580 | None:intergenic | 35.0% | |
| ATAATGCAGAAGATTCCAGT+TGG | - | chr3.4:92960665-92960684 | MS.gene80230:CDS | 35.0% | |
| ATACTCGTTGTGATTGTCAT+TGG | - | chr3.4:92959282-92959301 | MS.gene80230:intron | 35.0% | |
| ATTCACGTTAGTCATAACCT+AGG | - | chr3.4:92959377-92959396 | MS.gene80230:intron | 35.0% | |
| ATTGGTATGACTTTACGTAC+TGG | + | chr3.4:92961944-92961963 | None:intergenic | 35.0% | |
| CAAATCTAACCGGTAAATTG+TGG | + | chr3.4:92959181-92959200 | None:intergenic | 35.0% | |
| CATACATCCTTAACTTTACC+AGG | + | chr3.4:92963084-92963103 | None:intergenic | 35.0% | |
| CGTACAAATACCATAGCAAA+AGG | + | chr3.4:92962785-92962804 | None:intergenic | 35.0% | |
| CTGGTAAAGTTAAGGATGTA+TGG | - | chr3.4:92963082-92963101 | MS.gene80230:intron | 35.0% | |
| CTTGCCATTAAAACCAAAGT+TGG | - | chr3.4:92959545-92959564 | MS.gene80230:intron | 35.0% | |
| GATTGTAAGAGGAGTTCTAT+CGG | - | chr3.4:92963506-92963525 | MS.gene80230:intron | 35.0% | |
| GCCCAACCATAAAGAAAATT+GGG | + | chr3.4:92962239-92962258 | None:intergenic | 35.0% | |
| GGTAACTCACAAATACTTGA+TGG | - | chr3.4:92959586-92959605 | MS.gene80230:intron | 35.0% | |
| GTGAATAGTGATAACACTTG+AGG | + | chr3.4:92962311-92962330 | None:intergenic | 35.0% | |
| GTGATATTTCAACCTTACCA+GGG | - | chr3.4:92960820-92960839 | MS.gene80230:intron | 35.0% | |
| TAAAAGTTTGATTGGGGATG+TGG | - | chr3.4:92962061-92962080 | MS.gene80230:intron | 35.0% | |
| TAACCAAGGTCATATTGGAA+GGG | - | chr3.4:92964857-92964876 | MS.gene80230:intron | 35.0% | |
| TAATGGCAAGAACAATATCC+GGG | + | chr3.4:92959535-92959554 | None:intergenic | 35.0% | |
| TATGATAAAGTGGTCACTTG+AGG | + | chr3.4:92964735-92964754 | None:intergenic | 35.0% | |
| TCAATGCAAGGACAACAAAT+GGG | + | chr3.4:92963587-92963606 | None:intergenic | 35.0% | |
| TGATATTTCAACCTTACCAG+GGG | - | chr3.4:92960821-92960840 | MS.gene80230:intron | 35.0% | |
| TGTGATGAGAGAAGACAATT+TGG | + | chr3.4:92962582-92962601 | None:intergenic | 35.0% | |
| TTAATTCCAACCACGAAGAT+GGG | + | chr3.4:92962288-92962307 | None:intergenic | 35.0% | |
| TTCAATGCAAGGACAACAAA+TGG | + | chr3.4:92963588-92963607 | None:intergenic | 35.0% | |
| TTTACTCTTAAGGTTGTTGG+TGG | - | chr3.4:92960798-92960817 | MS.gene80230:intron | 35.0% | |
| ! | AAAGTGTTCTCAACTCCATA+TGG | + | chr3.4:92963366-92963385 | None:intergenic | 35.0% |
| ! | AAATTTTTATCCGTCATGGG+TGG | - | chr3.4:92958754-92958773 | MS.gene80230:intron | 35.0% |
| ! | AAGTTCCTTTAGGGAAACTT+GGG | + | chr3.4:92963058-92963077 | None:intergenic | 35.0% |
| ! | ATTGAGTTTGATGGTAAGAG+GGG | + | chr3.4:92961056-92961075 | None:intergenic | 35.0% |
| ! | CAAAGTGCTCATTCCATATT+GGG | + | chr3.4:92962945-92962964 | None:intergenic | 35.0% |
| ! | CAGAGAGTTGATTGTTATCT+TGG | - | chr3.4:92962481-92962500 | MS.gene80230:intron | 35.0% |
| ! | CATCCCCAATCAAACTTTTA+AGG | + | chr3.4:92962061-92962080 | None:intergenic | 35.0% |
| ! | CTCCAAATTTTTATCCGTCA+TGG | - | chr3.4:92958750-92958769 | MS.gene80230:intron | 35.0% |
| ! | GAAATCTGATCCTTTTGCTA+TGG | - | chr3.4:92962772-92962791 | MS.gene80230:intron | 35.0% |
| ! | GATACTCAAAAAAGAGCGTA+AGG | - | chr3.4:92961755-92961774 | MS.gene80230:intron | 35.0% |
| ! | GCACTTTTCAACAAAGTTAG+AGG | - | chr3.4:92961339-92961358 | MS.gene80230:intron | 35.0% |
| ! | TCAAACATTTGACTTCGTTG+TGG | - | chr3.4:92963929-92963948 | MS.gene80230:intron | 35.0% |
| ! | TCAAAGTGCTCATTCCATAT+TGG | + | chr3.4:92962946-92962965 | None:intergenic | 35.0% |
| !! | ACCCATGACGGATAAAAATT+TGG | + | chr3.4:92958755-92958774 | None:intergenic | 35.0% |
| !! | CATGACGGATAAAAATTTGG+AGG | + | chr3.4:92958752-92958771 | None:intergenic | 35.0% |
| !! | GATGGAGGTTTTAGCATAAA+TGG | + | chr3.4:92964261-92964280 | None:intergenic | 35.0% |
| !!! | AGTTTTGAAAGCGGTGAATT+TGG | + | chr3.4:92961115-92961134 | None:intergenic | 35.0% |
| !!! | TACTGGTTTTGGTTTTGTCA+CGG | + | chr3.4:92962814-92962833 | None:intergenic | 35.0% |
| AAAAACATCACCACCCTTAC+TGG | + | chr3.4:92964195-92964214 | None:intergenic | 40.0% | |
| AAACTCCATTGTCACTCCAT+TGG | + | chr3.4:92959492-92959511 | None:intergenic | 40.0% | |
| AACCAAGGTCATATTGGAAG+GGG | - | chr3.4:92964858-92964877 | MS.gene80230:intron | 40.0% | |
| AACCTAGAATTGAAACCCGT+TGG | - | chr3.4:92962692-92962711 | MS.gene80230:intron | 40.0% | |
| AACTCCATTGTCACTCCATT+GGG | + | chr3.4:92959491-92959510 | None:intergenic | 40.0% | |
| AATGGAGTTTGACATGCAGT+GGG | - | chr3.4:92959502-92959521 | MS.gene80230:intron | 40.0% | |
| AATTGCTGAGCGGTTTGAAA+AGG | + | chr3.4:92964284-92964303 | None:intergenic | 40.0% | |
| ACAACCAGTTGAACCCAATA+TGG | - | chr3.4:92962929-92962948 | MS.gene80230:CDS | 40.0% | |
| ACGTGGTTAGTGAGTAATCA+CGG | + | chr3.4:92963404-92963423 | None:intergenic | 40.0% | |
| ACTCAATATCATCATCACGG+AGG | - | chr3.4:92963472-92963491 | MS.gene80230:intron | 40.0% | |
| AGAAATAAACCCACTTGGGT+TGG | + | chr3.4:92960060-92960079 | None:intergenic | 40.0% | |
| AGACAATAGCAAAGTTTGCG+AGG | - | chr3.4:92958696-92958715 | MS.gene80230:intron | 40.0% | |
| AGATAACACCCTTAGTGTAG+GGG | + | chr3.4:92964400-92964419 | None:intergenic | 40.0% | |
| AGTGAGTAATCACGGACAAA+AGG | + | chr3.4:92963396-92963415 | None:intergenic | 40.0% | |
| AGTGATCATGACACTAACCA+AGG | - | chr3.4:92964843-92964862 | MS.gene80230:intron | 40.0% | |
| AGTGTAGCTCCACAATTTAC+CGG | - | chr3.4:92959169-92959188 | MS.gene80230:intron | 40.0% | |
| ATCACTAGCTCCATTCTTCA+GGG | + | chr3.4:92963436-92963455 | None:intergenic | 40.0% | |
| ATTCAAGCAGCTGAGCTTAT+TGG | - | chr3.4:92963027-92963046 | MS.gene80230:intron | 40.0% | |
| ATTGCTGAGCGGTTTGAAAA+GGG | + | chr3.4:92964283-92964302 | None:intergenic | 40.0% | |
| CAAGTTCACTTTGTTCACCT+AGG | + | chr3.4:92959397-92959416 | None:intergenic | 40.0% | |
| CACGAAGATGGGTAAGTTAA+AGG | + | chr3.4:92962277-92962296 | None:intergenic | 40.0% | |
| CATTCCATATTGGGTTCAAC+TGG | + | chr3.4:92962936-92962955 | None:intergenic | 40.0% | |
| CCAAGTTATAGAGTCTTCGA+TGG | + | chr3.4:92961921-92961940 | None:intergenic | 40.0% | |
| CCATCGAAGACTCTATAACT+TGG | - | chr3.4:92961918-92961937 | MS.gene80230:intron | 40.0% | |
| CCATTTAACATTGAGGTGGA+AGG | + | chr3.4:92961311-92961330 | None:intergenic | 40.0% | |
| CCTTCCACCTCAATGTTAAA+TGG | - | chr3.4:92961308-92961327 | MS.gene80230:intron | 40.0% | |
| CTAACCAAGGTCATATTGGA+AGG | - | chr3.4:92964856-92964875 | MS.gene80230:intron | 40.0% | |
| GACACTAACCAAGGTCATAT+TGG | - | chr3.4:92964852-92964871 | MS.gene80230:intron | 40.0% | |
| GAGATAACACCCTTAGTGTA+GGG | + | chr3.4:92964401-92964420 | None:intergenic | 40.0% | |
| GAGCTATTGTATTGCCCATA+TGG | - | chr3.4:92963348-92963367 | MS.gene80230:intron | 40.0% | |
| GATATCAGGTAATTGCTGAG+CGG | + | chr3.4:92964294-92964313 | None:intergenic | 40.0% | |
| GATTTGGCCATTTGTCAATG+AGG | - | chr3.4:92958927-92958946 | MS.gene80230:intron | 40.0% | |
| GCTAAATAGCCCACCTAAAT+TGG | - | chr3.4:92959964-92959983 | MS.gene80230:CDS | 40.0% | |
| GGCCTATACTGTTCAAGAAT+TGG | + | chr3.4:92959106-92959125 | None:intergenic | 40.0% | |
| GGTACAAGCGTTAAACTGAA+AGG | - | chr3.4:92961464-92961483 | MS.gene80230:CDS | 40.0% | |
| GGTGAACAAAGTGAACTTGA+AGG | - | chr3.4:92959398-92959417 | MS.gene80230:CDS | 40.0% | |
| GGTGATATTTCAACCTTACC+AGG | - | chr3.4:92960819-92960838 | MS.gene80230:intron | 40.0% | |
| GTGACCATTTAACATTGAGG+TGG | + | chr3.4:92961315-92961334 | None:intergenic | 40.0% | |
| GTGAGTAATCACGGACAAAA+GGG | + | chr3.4:92963395-92963414 | None:intergenic | 40.0% | |
| GTTAATTCCAACCACGAAGA+TGG | + | chr3.4:92962289-92962308 | None:intergenic | 40.0% | |
| GTTCTACGAACAGAAAGCTT+TGG | - | chr3.4:92960773-92960792 | MS.gene80230:intron | 40.0% | |
| TATCTCCTTGGATATCACGA+GGG | - | chr3.4:92964415-92964434 | MS.gene80230:intron | 40.0% | |
| TATTTGTGAGTTACCTGCAC+AGG | + | chr3.4:92959581-92959600 | None:intergenic | 40.0% | |
| TCATACCTCCGTCCTAAATA+AGG | + | chr3.4:92964446-92964465 | None:intergenic | 40.0% | |
| TCATTTCTTTCCCCCAAGTA+TGG | - | chr3.4:92964167-92964186 | MS.gene80230:intron | 40.0% | |
| TGAGTAAATACCACCCATGA+CGG | + | chr3.4:92958767-92958786 | None:intergenic | 40.0% | |
| TTATCTCCTTGGATATCACG+AGG | - | chr3.4:92964414-92964433 | MS.gene80230:intron | 40.0% | |
| TTTGAGAAGACCCTGAAGAA+TGG | - | chr3.4:92963423-92963442 | MS.gene80230:intron | 40.0% | |
| ! | AACATTTGACTTCGTTGTGG+AGG | - | chr3.4:92963932-92963951 | MS.gene80230:intron | 40.0% |
| ! | ACCAGGTTCAAGTTCCTTTA+GGG | + | chr3.4:92963067-92963086 | None:intergenic | 40.0% |
| ! | CAAGTTCCTTTAGGGAAACT+TGG | + | chr3.4:92963059-92963078 | None:intergenic | 40.0% |
| ! | CTTTAACTTACCCATCTTCG+TGG | - | chr3.4:92962275-92962294 | MS.gene80230:intron | 40.0% |
| ! | TACCAGGTTCAAGTTCCTTT+AGG | + | chr3.4:92963068-92963087 | None:intergenic | 40.0% |
| ! | TTCCAACGGGTTTCAATTCT+AGG | + | chr3.4:92962697-92962716 | None:intergenic | 40.0% |
| !! | AGAAGCACCCTATAAAACCT+TGG | + | chr3.4:92961688-92961707 | None:intergenic | 40.0% |
| !!! | CTTTGCCTGCACTAGTTTTA+AGG | + | chr3.4:92962726-92962745 | None:intergenic | 40.0% |
| !!! | TTTTGGTTTTGTCACGGAGT+GGG | + | chr3.4:92962808-92962827 | None:intergenic | 40.0% |
| AAACATACGGCTCCAAAAGC+AGG | + | chr3.4:92960450-92960469 | None:intergenic | 45.0% | |
| AAAGTGGTCACTTGAGGAGA+GGG | + | chr3.4:92964729-92964748 | None:intergenic | 45.0% | |
| AAAGTTTGCGAGGATGACAG+TGG | - | chr3.4:92958706-92958725 | MS.gene80230:intron | 45.0% | |
| AACATACGGCTCCAAAAGCA+GGG | + | chr3.4:92960449-92960468 | None:intergenic | 45.0% | |
| AACTTACCCATCTTCGTGGT+TGG | - | chr3.4:92962279-92962298 | MS.gene80230:intron | 45.0% | |
| AAGTATGGTTCCAGTAAGGG+TGG | - | chr3.4:92964182-92964201 | MS.gene80230:intron | 45.0% | |
| ACATGTGTGTGTGTGTGTGT+GGG | - | chr3.4:92964122-92964141 | MS.gene80230:intron | 45.0% | |
| ACCCTTACTGGAACCATACT+TGG | + | chr3.4:92964183-92964202 | None:intergenic | 45.0% | |
| AGCGAGCTAGCTATCTCTTA+AGG | - | chr3.4:92964345-92964364 | MS.gene80230:intron | 45.0% | |
| AGCTACACTACCGAGTGTAA+AGG | + | chr3.4:92959158-92959177 | None:intergenic | 45.0% | |
| AGGTGGGAAGTTAGGATATC+AGG | + | chr3.4:92964308-92964327 | None:intergenic | 45.0% | |
| ATAGCTAGCTCGCTAAAGAG+TGG | + | chr3.4:92964339-92964358 | None:intergenic | 45.0% | |
| CAATGGAGTTTGACATGCAG+TGG | - | chr3.4:92959501-92959520 | MS.gene80230:intron | 45.0% | |
| CATCACTAGCTCCATTCTTC+AGG | + | chr3.4:92963437-92963456 | None:intergenic | 45.0% | |
| CCCAAGTATGGTTCCAGTAA+GGG | - | chr3.4:92964179-92964198 | MS.gene80230:intron | 45.0% | |
| CCCTTACTGGAACCATACTT+GGG | + | chr3.4:92964182-92964201 | None:intergenic | 45.0% | |
| CCTTACTGGAACCATACTTG+GGG | + | chr3.4:92964181-92964200 | None:intergenic | 45.0% | |
| CTATGGGATCATGACACCTT+TGG | - | chr3.4:92963984-92964003 | MS.gene80230:intron | 45.0% | |
| CTCGCTAAAGAGTGGTTAGA+GGG | + | chr3.4:92964331-92964350 | None:intergenic | 45.0% | |
| CTGAAGAATGGAGCTAGTGA+TGG | - | chr3.4:92963435-92963454 | MS.gene80230:intron | 45.0% | |
| CTTACTGGAACCATACTTGG+GGG | + | chr3.4:92964180-92964199 | None:intergenic | 45.0% | |
| GACTCCACAACACAAGTATC+GGG | - | chr3.4:92964945-92964964 | MS.gene80230:CDS | 45.0% | |
| GCGAGCTAGCTATCTCTTAA+GGG | - | chr3.4:92964346-92964365 | MS.gene80230:intron | 45.0% | |
| GGACTCCACAACACAAGTAT+CGG | - | chr3.4:92964944-92964963 | MS.gene80230:CDS | 45.0% | |
| GGAGATAACACCCTTAGTGT+AGG | + | chr3.4:92964402-92964421 | None:intergenic | 45.0% | |
| GGCGAGTAAAAGGACATGAA+AGG | + | chr3.4:92964379-92964398 | None:intergenic | 45.0% | |
| GTGAGAGAAGACAAAACCAC+TGG | + | chr3.4:92959127-92959146 | None:intergenic | 45.0% | |
| TAAAGTGGTCACTTGAGGAG+AGG | + | chr3.4:92964730-92964749 | None:intergenic | 45.0% | |
| TACATGTGTGTGTGTGTGTG+TGG | - | chr3.4:92964121-92964140 | MS.gene80230:intron | 45.0% | |
| TATGTAGGCAGCGACAGAAT+TGG | - | chr3.4:92959063-92959082 | MS.gene80230:intron | 45.0% | |
| TCAACCAACATAGGTGCACT+TGG | - | chr3.4:92963326-92963345 | MS.gene80230:intron | 45.0% | |
| TCAATAGCTTCAGATACCCC+TGG | + | chr3.4:92960840-92960859 | None:intergenic | 45.0% | |
| TCCCTAAAGGAACTTGAACC+TGG | - | chr3.4:92963063-92963082 | MS.gene80230:intron | 45.0% | |
| TCTTGAACAGTATAGGCCAG+TGG | - | chr3.4:92959108-92959127 | MS.gene80230:intron | 45.0% | |
| TGGTATTGTACTACCTGTGC+AGG | - | chr3.4:92959565-92959584 | MS.gene80230:intron | 45.0% | |
| TTAGTGTAGGGGCGAGTAAA+AGG | + | chr3.4:92964389-92964408 | None:intergenic | 45.0% | |
| TTCATCAGCGGCATGATCAT+TGG | - | chr3.4:92958435-92958454 | MS.gene80230:CDS | 45.0% | |
| TTCCCCTTCCAATATGACCT+TGG | + | chr3.4:92964863-92964882 | None:intergenic | 45.0% | |
| TTGTGCCCAAGTTTCCCTAA+AGG | - | chr3.4:92963050-92963069 | MS.gene80230:intron | 45.0% | |
| TTTACTCGCCCCTACACTAA+GGG | - | chr3.4:92964389-92964408 | MS.gene80230:intron | 45.0% | |
| ! | ATTCTCTCCGGTGCCAATTT+AGG | + | chr3.4:92959980-92959999 | None:intergenic | 45.0% |
| ! | CACTTCCTTATTTAGGACGG+AGG | - | chr3.4:92964438-92964457 | MS.gene80230:intron | 45.0% |
| ! | GGATCATGACACCTTTGGAA+AGG | - | chr3.4:92963989-92964008 | MS.gene80230:intron | 45.0% |
| ! | GGGCACTTCCTTATTTAGGA+CGG | - | chr3.4:92964435-92964454 | MS.gene80230:intron | 45.0% |
| ! | GTAGCTGAATTCCCTGCTTT+TGG | - | chr3.4:92960435-92960454 | MS.gene80230:CDS | 45.0% |
| ! | TTGGATTCACTGGGGTTTTC+AGG | - | chr3.4:92960394-92960413 | MS.gene80230:CDS | 45.0% |
| ! | TTTGACTTCGTTGTGGAGGA+TGG | - | chr3.4:92963936-92963955 | MS.gene80230:intron | 45.0% |
| ! | TTTGATGGTAAGAGGGGCAA+TGG | + | chr3.4:92961050-92961069 | None:intergenic | 45.0% |
| ! | TTTTACTCGCCCCTACACTA+AGG | - | chr3.4:92964388-92964407 | MS.gene80230:intron | 45.0% |
| !! | AAGAGGTGTCACCTTTCCAA+AGG | + | chr3.4:92964003-92964022 | None:intergenic | 45.0% |
| !! | ACGAGGGCACTTCCTTATTT+AGG | - | chr3.4:92964431-92964450 | MS.gene80230:intron | 45.0% |
| !! | AGGGGTATCTGAAGCTATTG+AGG | - | chr3.4:92960839-92960858 | MS.gene80230:intron | 45.0% |
| !! | CACTAAGGGTGTTATCTCCT+TGG | - | chr3.4:92964403-92964422 | MS.gene80230:intron | 45.0% |
| !!! | GTTTTGGTTTTGTCACGGAG+TGG | + | chr3.4:92962809-92962828 | None:intergenic | 45.0% |
| !! | AACAATATAAATAAATAAAA+TGG | + | chr3.4:92964519-92964538 | None:intergenic | 5.0% |
| !! | CAAATAAATAAATAATAAAT+AGG | + | chr3.4:92962852-92962871 | None:intergenic | 5.0% |
| !!! | ATTATTATTTTTATTAGTTT+GGG | - | chr3.4:92962418-92962437 | MS.gene80230:intron | 5.0% |
| !!! | TATTATTATTTTTATTAGTT+TGG | - | chr3.4:92962417-92962436 | MS.gene80230:intron | 5.0% |
| AAAGAGTGGTTAGAGGGAGG+TGG | + | chr3.4:92964325-92964344 | None:intergenic | 50.0% | |
| AAGAGTGGTTAGAGGGAGGT+GGG | + | chr3.4:92964324-92964343 | None:intergenic | 50.0% | |
| AAGTGCCCTCGTGATATCCA+AGG | + | chr3.4:92964423-92964442 | None:intergenic | 50.0% | |
| AAGTGGTCACTTGAGGAGAG+GGG | + | chr3.4:92964728-92964747 | None:intergenic | 50.0% | |
| AGCGGTTTGAAAAGGGATGG+AGG | + | chr3.4:92964276-92964295 | None:intergenic | 50.0% | |
| AGCTCCAAGTGCACCTATGT+TGG | + | chr3.4:92963333-92963352 | None:intergenic | 50.0% | |
| AGCTTCAGATACCCCTGGTA+AGG | + | chr3.4:92960835-92960854 | None:intergenic | 50.0% | |
| ATGTGTGTGTGTGTGTGTGG+GGG | - | chr3.4:92964124-92964143 | MS.gene80230:intron | 50.0% | |
| CATGTGTGTGTGTGTGTGTG+GGG | - | chr3.4:92964123-92964142 | MS.gene80230:intron | 50.0% | |
| CCCCAAGTATGGTTCCAGTA+AGG | - | chr3.4:92964178-92964197 | MS.gene80230:intron | 50.0% | |
| CTGAGCGGTTTGAAAAGGGA+TGG | + | chr3.4:92964279-92964298 | None:intergenic | 50.0% | |
| CTTCAGGGTCTTCTCAAACG+TGG | + | chr3.4:92963421-92963440 | None:intergenic | 50.0% | |
| GAGTTTGACATGCAGTGGGA+TGG | - | chr3.4:92959506-92959525 | MS.gene80230:intron | 50.0% | |
| GCAGGGAATTCAGCTACAAG+AGG | + | chr3.4:92960432-92960451 | None:intergenic | 50.0% | |
| GCTAAAGAGTGGTTAGAGGG+AGG | + | chr3.4:92964328-92964347 | None:intergenic | 50.0% | |
| GCTCGCTAAAGAGTGGTTAG+AGG | + | chr3.4:92964332-92964351 | None:intergenic | 50.0% | |
| GGTTCCCGATACTTGTGTTG+TGG | + | chr3.4:92964952-92964971 | None:intergenic | 50.0% | |
| GTCTCAGGTTCGATTCTCTC+CGG | + | chr3.4:92959992-92960011 | None:intergenic | 50.0% | |
| TAACTTACGTGTTCGGGGTG+TGG | - | chr3.4:92958649-92958668 | MS.gene80230:intron | 50.0% | |
| TACCAAATCTGTGCGACGCT+TGG | + | chr3.4:92958517-92958536 | None:intergenic | 50.0% | |
| TAGCCCACCTAAATTGGCAC+CGG | - | chr3.4:92959970-92959989 | MS.gene80230:CDS | 50.0% | |
| TTAGAGGGAGGTGGGAAGTT+AGG | + | chr3.4:92964316-92964335 | None:intergenic | 50.0% | |
| ! | ATCCAAGCGTCGCACAGATT+TGG | - | chr3.4:92958512-92958531 | MS.gene80230:CDS | 50.0% |
| ! | GAATGGAGCTAGTGATGGAG+AGG | - | chr3.4:92963440-92963459 | MS.gene80230:intron | 50.0% |
| ! | TCTCCGGTGCCAATTTAGGT+GGG | + | chr3.4:92959976-92959995 | None:intergenic | 50.0% |
| !! | GTGGTATTGGCTTGGGTCTT+GGG | + | chr3.4:92960033-92960052 | None:intergenic | 50.0% |
| AGACCCAAGCCAATACCACC+AGG | - | chr3.4:92960034-92960053 | MS.gene80230:CDS | 55.0% | |
| AGTGGTCACTTGAGGAGAGG+GGG | + | chr3.4:92964727-92964746 | None:intergenic | 55.0% | |
| CATGCAGTGGGATGGTAACC+CGG | - | chr3.4:92959514-92959533 | MS.gene80230:intron | 55.0% | |
| GTTTGCGAGGATGACAGTGG+AGG | - | chr3.4:92958709-92958728 | MS.gene80230:intron | 55.0% | |
| TCGAACCTGAGACCTTGCAG+AGG | - | chr3.4:92959999-92960018 | MS.gene80230:CDS | 55.0% | |
| TGGGCCCAATGGAGTGACAA+TGG | - | chr3.4:92959484-92959503 | MS.gene80230:CDS | 55.0% | |
| TGTGTGTGTGTGTGTGTGGG+GGG | - | chr3.4:92964125-92964144 | MS.gene80230:intron | 55.0% | |
| ! | CTCTCCGGTGCCAATTTAGG+TGG | + | chr3.4:92959977-92959996 | None:intergenic | 55.0% |
| ! | TGGAGCTAGTGATGGAGAGG+AGG | - | chr3.4:92963443-92963462 | MS.gene80230:intron | 55.0% |
| !! | GAAGAGGATAGTGGGCCCAA+TGG | - | chr3.4:92959473-92959492 | MS.gene80230:CDS | 55.0% |
| !! | GGTGGTATTGGCTTGGGTCT+TGG | + | chr3.4:92960034-92960053 | None:intergenic | 55.0% |
| !! | TAAACCCACTTGGGTTGGCC+TGG | + | chr3.4:92960055-92960074 | None:intergenic | 55.0% |
| !! | TGGCCTGGTGGTATTGGCTT+GGG | + | chr3.4:92960040-92960059 | None:intergenic | 55.0% |
| !! | TTGGCCTGGTGGTATTGGCT+TGG | + | chr3.4:92960041-92960060 | None:intergenic | 55.0% |
| !! | TTGGGTTGGCCTGGTGGTAT+TGG | + | chr3.4:92960046-92960065 | None:intergenic | 55.0% |
| ACCACCAGGCCAACCCAAGT+GGG | - | chr3.4:92960048-92960067 | MS.gene80230:intron | 60.0% | |
| GTGCTCCTCTGCAAGGTCTC+AGG | + | chr3.4:92960007-92960026 | None:intergenic | 60.0% | |
| GTGTGTGTGTGTGTGTGGGG+GGG | - | chr3.4:92964126-92964145 | MS.gene80230:intron | 60.0% | |
| TACCACCAGGCCAACCCAAG+TGG | - | chr3.4:92960047-92960066 | MS.gene80230:intron | 60.0% | |
| ! | TGGGAGTGTGCTCCTCTGCA+AGG | + | chr3.4:92960014-92960033 | None:intergenic | 60.0% |
| !! | ACCCACTTGGGTTGGCCTGG+TGG | + | chr3.4:92960052-92960071 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 92958429 | 92964975 | 92958429 | ID=MS.gene80230 |
| chr3.4 | mRNA | 92958429 | 92964975 | 92958429 | ID=MS.gene80230.t1;Parent=MS.gene80230 |
| chr3.4 | exon | 92964871 | 92964975 | 92964871 | ID=MS.gene80230.t1.exon1;Parent=MS.gene80230.t1 |
| chr3.4 | CDS | 92964871 | 92964975 | 92964871 | ID=cds.MS.gene80230.t1;Parent=MS.gene80230.t1 |
| chr3.4 | exon | 92964599 | 92964712 | 92964599 | ID=MS.gene80230.t1.exon2;Parent=MS.gene80230.t1 |
| chr3.4 | CDS | 92964599 | 92964712 | 92964599 | ID=cds.MS.gene80230.t1;Parent=MS.gene80230.t1 |
| chr3.4 | exon | 92964456 | 92964506 | 92964456 | ID=MS.gene80230.t1.exon3;Parent=MS.gene80230.t1 |
| chr3.4 | CDS | 92964456 | 92964506 | 92964456 | ID=cds.MS.gene80230.t1;Parent=MS.gene80230.t1 |
| chr3.4 | exon | 92964214 | 92964334 | 92964214 | ID=MS.gene80230.t1.exon4;Parent=MS.gene80230.t1 |
| chr3.4 | CDS | 92964214 | 92964334 | 92964214 | ID=cds.MS.gene80230.t1;Parent=MS.gene80230.t1 |
| chr3.4 | exon | 92963818 | 92963945 | 92963818 | ID=MS.gene80230.t1.exon5;Parent=MS.gene80230.t1 |
| chr3.4 | CDS | 92963818 | 92963945 | 92963818 | ID=cds.MS.gene80230.t1;Parent=MS.gene80230.t1 |
| chr3.4 | exon | 92962919 | 92963020 | 92962919 | ID=MS.gene80230.t1.exon6;Parent=MS.gene80230.t1 |
| chr3.4 | CDS | 92962919 | 92963020 | 92962919 | ID=cds.MS.gene80230.t1;Parent=MS.gene80230.t1 |
| chr3.4 | exon | 92962544 | 92962618 | 92962544 | ID=MS.gene80230.t1.exon7;Parent=MS.gene80230.t1 |
| chr3.4 | CDS | 92962544 | 92962618 | 92962544 | ID=cds.MS.gene80230.t1;Parent=MS.gene80230.t1 |
| chr3.4 | exon | 92961423 | 92961502 | 92961423 | ID=MS.gene80230.t1.exon8;Parent=MS.gene80230.t1 |
| chr3.4 | CDS | 92961423 | 92961502 | 92961423 | ID=cds.MS.gene80230.t1;Parent=MS.gene80230.t1 |
| chr3.4 | exon | 92960563 | 92960713 | 92960563 | ID=MS.gene80230.t1.exon9;Parent=MS.gene80230.t1 |
| chr3.4 | CDS | 92960563 | 92960713 | 92960563 | ID=cds.MS.gene80230.t1;Parent=MS.gene80230.t1 |
| chr3.4 | exon | 92960246 | 92960476 | 92960246 | ID=MS.gene80230.t1.exon10;Parent=MS.gene80230.t1 |
| chr3.4 | CDS | 92960246 | 92960476 | 92960246 | ID=cds.MS.gene80230.t1;Parent=MS.gene80230.t1 |
| chr3.4 | exon | 92959769 | 92960065 | 92959769 | ID=MS.gene80230.t1.exon11;Parent=MS.gene80230.t1 |
| chr3.4 | CDS | 92959769 | 92960065 | 92959769 | ID=cds.MS.gene80230.t1;Parent=MS.gene80230.t1 |
| chr3.4 | exon | 92959394 | 92959507 | 92959394 | ID=MS.gene80230.t1.exon12;Parent=MS.gene80230.t1 |
| chr3.4 | CDS | 92959394 | 92959507 | 92959394 | ID=cds.MS.gene80230.t1;Parent=MS.gene80230.t1 |
| chr3.4 | exon | 92958429 | 92958575 | 92958429 | ID=MS.gene80230.t1.exon13;Parent=MS.gene80230.t1 |
| chr3.4 | CDS | 92958429 | 92958575 | 92958429 | ID=cds.MS.gene80230.t1;Parent=MS.gene80230.t1 |
| Gene Sequence |
| Protein sequence |
