AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene052484


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 172 sgRNAs with CRISPR-Local

Find 307 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCATAATTCATTGGACTTTC+TGG 0.056329 4.3:+24096541 None:intergenic
CTCTGGAGCAACATACTTTA+TGG 0.200265 4.3:-24100057 MS.gene052484:CDS
CTCCGCTCTTGCTGCTGTTC+TGG 0.212629 4.3:+24098838 None:intergenic
AAACCTTGCAACCAACTTAT+AGG 0.224407 4.3:-24098969 MS.gene052484:CDS
GCAAAATTGTAATTTCCTAA+TGG 0.255352 4.3:-24100348 MS.gene052484:CDS
CGAAAAGCAACTAAAAGATT+TGG 0.258652 4.3:-24098133 MS.gene052484:CDS
ACATCATATACTCCACAATT+TGG 0.262844 4.3:-24098000 MS.gene052484:CDS
CTTGTTCTCATTGATGAAAT+TGG 0.280062 4.3:-24099156 MS.gene052484:CDS
ATAGTACCTAAACTGAAAAT+TGG 0.281975 4.3:+24099831 None:intergenic
CCAGAAAGTCCAATGAATTA+TGG 0.282003 4.3:-24096541 MS.gene052484:CDS
TTGCATAGATTGCAATCTTT+TGG 0.292449 4.3:-24100303 MS.gene052484:CDS
CTAGAATGTGCGTGGGCATC+AGG 0.296994 4.3:-24100130 MS.gene052484:CDS
GACCTTATCCTTGCAGATAT+TGG 0.312231 4.3:-24099420 MS.gene052484:CDS
AGCAATGGTGATATTTATTA+TGG 0.313667 4.3:-24096763 MS.gene052484:CDS
CAAAATTGTAATTTCCTAAT+GGG 0.314744 4.3:-24100347 MS.gene052484:CDS
TTGCATCCTCTAACTCTTGT+TGG 0.316694 4.3:+24098187 None:intergenic
TTCAAATCTATTGCTTCTTT+CGG 0.318025 4.3:+24100032 None:intergenic
AGGTCAAACCAAGGAAGTTT+TGG 0.325111 4.3:+24099438 None:intergenic
AACCTTGCAACCAACTTATA+GGG 0.326348 4.3:-24098968 MS.gene052484:CDS
TCATTAGATCAGAACGAAAA+AGG 0.327607 4.3:-24100247 MS.gene052484:CDS
CTTGGCAGGCAGATGCATTC+CGG 0.328681 4.3:+24099467 None:intergenic
TTCTTAGATGTTTGCACCGC+TGG 0.347990 4.3:+24096739 None:intergenic
GATCGACGCTTAGTAATAAA+TGG 0.355822 4.3:+24100152 None:intergenic
GAAAAGCAACTAAAAGATTT+GGG 0.371137 4.3:-24098132 MS.gene052484:CDS
ATCAGAGATAAAATATTTGT+TGG 0.373046 4.3:-24099922 MS.gene052484:CDS
TCTGAGTTGGGTAATGGAAA+TGG 0.381561 4.3:-24099654 MS.gene052484:CDS
ATTACAAAGAGAACTGAATA+TGG 0.386756 4.3:+24096643 None:intergenic
AACTAGTTCTCCCACTCATC+AGG 0.387558 4.3:-24097821 MS.gene052484:CDS
CAAGGTCTTCTGCCTCCCTT+TGG 0.387704 4.3:+24098253 None:intergenic
AGGGTTCTCTGGGGATGTAT+TGG 0.387828 4.3:-24098949 MS.gene052484:CDS
GTTCTGAATGCCAGCAGCTC+TGG 0.388227 4.3:-24100074 MS.gene052484:CDS
AACCAACTTATAGGGTTCTC+TGG 0.388468 4.3:-24098960 MS.gene052484:CDS
GTAATACATGGGATGGGCAC+TGG 0.389103 4.3:-24096625 MS.gene052484:CDS
TTGTAATTTCCTAATGGGCT+TGG 0.389277 4.3:-24100342 MS.gene052484:CDS
GAAACAATCTTGGTACAGTA+TGG 0.389406 4.3:-24097910 MS.gene052484:CDS
TTAAGCATAGCGCAATCTAT+TGG 0.392431 4.3:-24098913 MS.gene052484:CDS
AATTCTTCTGAGTTGGGTAA+TGG 0.397648 4.3:-24099660 MS.gene052484:CDS
TCCTAATGGGCTTGGAGCGC+AGG 0.398236 4.3:-24100334 MS.gene052484:CDS
AATGCTCTATCAGTCATTAC+AGG 0.405453 4.3:-24098812 MS.gene052484:CDS
GTTCATAATTTCTGCATGAA+TGG 0.405550 4.3:+24098747 None:intergenic
CAAGTCCGTGTGAAGGGATT+GGG 0.412733 4.3:-24097973 MS.gene052484:CDS
GTCATCTCAGGACCTAATAC+TGG 0.416951 4.3:-24099543 MS.gene052484:CDS
GTTGACTTCAAAATTAGATC+TGG 0.420665 4.3:-24099579 MS.gene052484:CDS
TGCTGATCTAAGTACTTTGA+AGG 0.425952 4.3:-24099037 MS.gene052484:CDS
TCAGTTCTCTTTGTAATACA+TGG 0.427691 4.3:-24096637 MS.gene052484:CDS
ATTTGAACAACATGGAAGTT+AGG 0.428354 4.3:-24100016 MS.gene052484:CDS
ACTAGAGTGGTGGTCATCTC+AGG 0.432380 4.3:-24099555 MS.gene052484:CDS
TAATACATGGGATGGGCACT+GGG 0.432402 4.3:-24096624 MS.gene052484:CDS
GTCTGGAAATTCTTCTGAGT+TGG 0.433211 4.3:-24099667 MS.gene052484:CDS
GCATTCAGAACTATACCTTC+TGG 0.438902 4.3:+24100086 None:intergenic
TCCTGCGCTCCAAGCCCATT+AGG 0.439036 4.3:+24100333 None:intergenic
TCTGGAAATTCTTCTGAGTT+GGG 0.439306 4.3:-24099666 MS.gene052484:CDS
GCCTATGCTCAATGGATGAA+TGG 0.442164 4.3:-24099861 MS.gene052484:CDS
GCAAGTCCGTGTGAAGGGAT+TGG 0.444020 4.3:-24097974 MS.gene052484:CDS
TGAGTGGGAGAACTAGTTGC+AGG 0.444981 4.3:+24097826 None:intergenic
CTCCAATATCTGCAAGGATA+AGG 0.447195 4.3:+24099418 None:intergenic
ACGGGTCCAACAAGAGTTAG+AGG 0.448882 4.3:-24098193 MS.gene052484:CDS
ACAGTACATCCATAATTCAT+TGG 0.451719 4.3:+24096532 None:intergenic
TATGGCAAAGGAAGCTCAAC+GGG 0.452879 4.3:-24098211 MS.gene052484:CDS
AGAAAAGTCCAAAACTTCCT+TGG 0.454680 4.3:-24099446 MS.gene052484:CDS
AATCCTGGACTCTTTATTGA+AGG 0.459366 4.3:-24100216 MS.gene052484:CDS
TAGACGTGAAACGATGCTTA+TGG 0.459950 4.3:-24098229 MS.gene052484:CDS
CTTTAATTATTGAATTGAGT+TGG 0.464631 4.3:+24098103 None:intergenic
GTTAAAGGCTCAAGCTGAAA+AGG 0.465641 4.3:-24098776 MS.gene052484:CDS
TTCAAACTCTGAAGCGGCCG+AGG 0.466077 4.3:-24099991 MS.gene052484:CDS
ACCAACTTATAGGGTTCTCT+GGG 0.467907 4.3:-24098959 MS.gene052484:CDS
TTCAATGAAAACGTTGGGCC+TGG 0.468162 4.3:-24099508 MS.gene052484:CDS
GCAGGATTCTTTGCACTTGG+TGG 0.477236 4.3:+24097844 None:intergenic
CCGCAGATATTGTAAGATAC+TGG 0.478412 4.3:+24099095 None:intergenic
GTATGTTGCTCCAGAGCTGC+TGG 0.478675 4.3:+24100064 None:intergenic
GCCACAGTGGTAGAATTGCC+TGG 0.478854 4.3:-24097940 MS.gene052484:CDS
CAATGACATTGCGGTCGTGC+AGG 0.479424 4.3:-24099781 MS.gene052484:CDS
CTCATTGATGAAATTGGTAG+TGG 0.480474 4.3:-24099150 MS.gene052484:CDS
AGAGGATGCAAAATCTCAAA+TGG 0.483805 4.3:-24098175 MS.gene052484:CDS
ATCTAAGTACTTTGAAGGAA+AGG 0.486923 4.3:-24099032 MS.gene052484:CDS
TCTAAGTACTTTGAAGGAAA+GGG 0.492540 4.3:-24099031 MS.gene052484:CDS
GATAATGTCACACTAAGGTC+TGG 0.494415 4.3:-24099684 MS.gene052484:CDS
ACTGCTTCAATGAAAACGTT+GGG 0.494465 4.3:-24099513 MS.gene052484:CDS
CAAGAGCTGCCTATGCTCAA+TGG 0.496220 4.3:-24099869 MS.gene052484:CDS
CCTATGCTCAATGGATGAAT+GGG 0.497615 4.3:-24099860 MS.gene052484:CDS
GTTGCAGGATTCTTTGCACT+TGG 0.499764 4.3:+24097841 None:intergenic
CTATTGTAGAAACCACTGAA+TGG 0.501864 4.3:-24096817 MS.gene052484:intron
CGATTTAACAGTAAATATTG+AGG 0.507073 4.3:-24099754 MS.gene052484:CDS
ACCTGCTTTCCCTGATGAGT+GGG 0.510949 4.3:+24097811 None:intergenic
TCTCTTTGTAATACATGGGA+TGG 0.512107 4.3:-24096632 MS.gene052484:CDS
TATGCGGCATCCATTACTCC+TGG 0.512692 4.3:-24099730 MS.gene052484:CDS
CGCTGATTGTCATCTCAAGA+TGG 0.514272 4.3:+24096674 None:intergenic
ACCACTGAATGGAAAATCCC+GGG 0.517125 4.3:-24096806 MS.gene052484:CDS
ATGCGATCAGCGCCACTGAT+GGG 0.523837 4.3:+24098024 None:intergenic
AACCCTATAAGTTGGTTGCA+AGG 0.524314 4.3:+24098966 None:intergenic
GCATCGTTTCACGTCTATCA+AGG 0.526470 4.3:+24098235 None:intergenic
CCACAGTGGTAGAATTGCCT+GGG 0.526487 4.3:-24097939 MS.gene052484:CDS
TCCCACTCATCAGGGAAAGC+AGG 0.529174 4.3:-24097812 MS.gene052484:intron
TTCAGTTTAGGTACTATTGG+AGG 0.531767 4.3:-24099825 MS.gene052484:CDS
GTTCTGATCTAATGATCTCC+AGG 0.531958 4.3:+24100255 None:intergenic
ACTCAAAATTGCTCTTTCCT+CGG 0.533024 4.3:+24099974 None:intergenic
AACCACTGAATGGAAAATCC+CGG 0.535658 4.3:-24096807 MS.gene052484:CDS
CTTCCTTCAATAAAGAGTCC+AGG 0.535939 4.3:+24100213 None:intergenic
CAGTTCTCTTTGTAATACAT+GGG 0.538091 4.3:-24096636 MS.gene052484:CDS
TGGGCATCAGGGCTTCGTAT+AGG 0.539792 4.3:-24100118 MS.gene052484:CDS
TAATTGACCATGCACAAAAG+TGG 0.545555 4.3:-24098876 MS.gene052484:CDS
GGAGAGCAAGTCCGTGTGAA+GGG 0.549755 4.3:-24097979 MS.gene052484:CDS
CCCCAGAGAACCCTATAAGT+TGG 0.550494 4.3:+24098958 None:intergenic
CGGACTTGCTCTCCAAATTG+TGG 0.554429 4.3:+24097988 None:intergenic
TGGGGATGATGAAACAATCT+TGG 0.554483 4.3:-24097920 MS.gene052484:CDS
GTTCATCTCTAAGTTACCCC+GGG 0.556248 4.3:+24096789 None:intergenic
TCTGCGGGAACATGTTAACT+TGG 0.556527 4.3:-24099079 MS.gene052484:CDS
AGAGACGACTCCAGGAGTAA+TGG 0.558135 4.3:+24099720 None:intergenic
AACCAGAACAGCAGCAAGAG+CGG 0.560885 4.3:-24098840 MS.gene052484:CDS
GATTTAACAGTAAATATTGA+GGG 0.563255 4.3:-24099753 MS.gene052484:CDS
TATAGGTATTTGCTTCCAGA+AGG 0.564358 4.3:-24100101 MS.gene052484:CDS
TGCAGATATTGGAGATCACC+AGG 0.564613 4.3:-24099409 MS.gene052484:intron
TGATAGAGCAAGTGAAGACC+TGG 0.568238 4.3:-24100273 MS.gene052484:CDS
CTCTTTGTAATACATGGGAT+GGG 0.569356 4.3:-24096631 MS.gene052484:CDS
AGGTTGCAATTCTGTTGAAG+AGG 0.570911 4.3:-24099805 MS.gene052484:CDS
GCATCACTTATGTCAAAAGC+CGG 0.571118 4.3:-24099486 MS.gene052484:CDS
AACTGATCCTTCAGAAGGTG+TGG 0.571658 4.3:-24099127 MS.gene052484:CDS
CAGTATCTTACAATATCTGC+GGG 0.572845 4.3:-24099094 MS.gene052484:CDS
TTCCTCCCAATCCCTTCACA+CGG 0.581458 4.3:+24097968 None:intergenic
GCCACTGATGGGAGAACCAA+CGG 0.582829 4.3:+24098035 None:intergenic
AAGATTGTTTCATCATCCCC+AGG 0.584283 4.3:+24097922 None:intergenic
AACTGCTTCAATGAAAACGT+TGG 0.585712 4.3:-24099514 MS.gene052484:CDS
TGGAGAGCAAGTCCGTGTGA+AGG 0.586036 4.3:-24097980 MS.gene052484:CDS
TGAAACGATGCTTATGGCAA+AGG 0.587621 4.3:-24098223 MS.gene052484:CDS
TTAGAGATGAACAGCAGCAA+TGG 0.589819 4.3:-24096778 MS.gene052484:CDS
TGTTCATCTCTAAGTTACCC+CGG 0.590270 4.3:+24096788 None:intergenic
ACTAGTTCTCCCACTCATCA+GGG 0.590763 4.3:-24097820 MS.gene052484:CDS
GCCGTTGGTTCTCCCATCAG+TGG 0.592897 4.3:-24098036 MS.gene052484:CDS
TTTCAGATAATGTCACACTA+AGG 0.593354 4.3:-24099689 MS.gene052484:CDS
TACCTGCTTTCCCTGATGAG+TGG 0.594282 4.3:+24097810 None:intergenic
TAGAATGTGCGTGGGCATCA+GGG 0.594705 4.3:-24100129 MS.gene052484:CDS
AATGCGATCAGCGCCACTGA+TGG 0.596091 4.3:+24098023 None:intergenic
GCGTCGATCTAGAATGTGCG+TGG 0.598379 4.3:-24100138 MS.gene052484:CDS
AATTGACCATGCACAAAAGT+GGG 0.600519 4.3:-24098875 MS.gene052484:CDS
TAGGCTTTCAAACTCTGAAG+CGG 0.601365 4.3:-24099997 MS.gene052484:CDS
ATCTCAGGACCTAATACTGG+AGG 0.603222 4.3:-24099540 MS.gene052484:CDS
GAAAGAGCCACACCTTCTGA+AGG 0.603440 4.3:+24099120 None:intergenic
AGCAATAGATTTGAACAACA+TGG 0.612310 4.3:-24100024 MS.gene052484:CDS
GTCCGTGTGAAGGGATTGGG+AGG 0.612668 4.3:-24097970 MS.gene052484:CDS
CCAGTATCTTACAATATCTG+CGG 0.612724 4.3:-24099095 MS.gene052484:CDS
CCCATTCATCCATTGAGCAT+AGG 0.615621 4.3:+24099860 None:intergenic
GGATCTACGAGGTATGCGAC+TGG 0.616506 4.3:-24096710 MS.gene052484:CDS
GCTTCTAAAAGCGCGTCACA+AGG 0.619119 4.3:-24099624 MS.gene052484:CDS
AATTAGATCTGGAACTAGAG+TGG 0.621351 4.3:-24099568 MS.gene052484:CDS
AAAGCTCATACTCCTGCCGT+TGG 0.625973 4.3:-24098051 MS.gene052484:CDS
CAGTAAATATTGAGGGTATG+CGG 0.626418 4.3:-24099746 MS.gene052484:CDS
TTATGGCAAAGGAAGCTCAA+CGG 0.627066 4.3:-24098212 MS.gene052484:CDS
AGTGGAACTGATCCTTCAGA+AGG 0.631076 4.3:-24099132 MS.gene052484:CDS
CTGATGGGAGAACCAACGGC+AGG 0.643450 4.3:+24098039 None:intergenic
GGTGATCTCCAATATCTGCA+AGG 0.644964 4.3:+24099412 None:intergenic
TTCCAGTGAAAATTCCATTG+CGG 0.649211 4.3:+24098990 None:intergenic
CGTCGATCTAGAATGTGCGT+GGG 0.653354 4.3:-24100137 MS.gene052484:CDS
TGACCATGCACAAAAGTGGG+TGG 0.654188 4.3:-24098872 MS.gene052484:CDS
GGGTAATGGAAATGGAACAA+TGG 0.655085 4.3:-24099646 MS.gene052484:CDS
GAACAGCAGCAAGAGCGGAG+AGG 0.655853 4.3:-24098835 MS.gene052484:CDS
GCAAACATCTAAGAATACTG+TGG 0.660918 4.3:-24096731 MS.gene052484:CDS
GCTCTATCAGTCATTACAGG+AGG 0.665919 4.3:-24098809 MS.gene052484:CDS
TCTCAGGACCTAATACTGGA+GGG 0.667789 4.3:-24099539 MS.gene052484:CDS
TAGATCTGGAACTAGAGTGG+TGG 0.673809 4.3:-24099565 MS.gene052484:CDS
ACTTAGATCAGCATAATGAG+TGG 0.681388 4.3:+24099047 None:intergenic
CACAGTGGTAGAATTGCCTG+GGG 0.691114 4.3:-24097938 MS.gene052484:CDS
TGATATTTATTATGGTCCAG+CGG 0.693969 4.3:-24096755 MS.gene052484:CDS
AATTATGAACGTGTACTCTG+AGG 0.698166 4.3:-24098734 MS.gene052484:intron
AATACATGGGATGGGCACTG+GGG 0.701367 4.3:-24096623 MS.gene052484:CDS
TGAAGAGGACAATGACATTG+CGG 0.707528 4.3:-24099790 MS.gene052484:CDS
CCCAGGCAATTCTACCACTG+TGG 0.714085 4.3:+24097939 None:intergenic
GGGAGGAAAATTAGCCACAG+TGG 0.714859 4.3:-24097953 MS.gene052484:CDS
GCAAGGATAAGGTCAAACCA+AGG 0.720894 4.3:+24099429 None:intergenic
CCACTGAATGGAAAATCCCG+GGG 0.744139 4.3:-24096805 MS.gene052484:CDS
AAGAATACTGTGGATCTACG+AGG 0.748281 4.3:-24096721 MS.gene052484:CDS
GGTTCAAAATGAGTGACACG+AGG 0.753470 4.3:+24096562 None:intergenic
CCAACTTATAGGGTTCTCTG+GGG 0.797932 4.3:-24098958 MS.gene052484:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATATATATATATATCATG+TGG - chr4.3:24097583-24097602 MS.gene052484:intron 10.0%
!!! AATTTAGAATTGATATATTT+TGG - chr4.3:24099514-24099533 MS.gene052484:CDS 10.0%
!! AAATACCTTTCAATAAAATT+TGG + chr4.3:24099450-24099469 None:intergenic 15.0%
!! AATTTCAGATAAACTTTAAA+AGG + chr4.3:24098272-24098291 None:intergenic 15.0%
!! ATAATGATTATCATACTATA+TGG + chr4.3:24098245-24098264 None:intergenic 15.0%
!! ATATAAGTAAAAGAAGTTAT+TGG - chr4.3:24099414-24099433 MS.gene052484:CDS 15.0%
!!! AAGGTATTTTATATTTAATC+TGG - chr4.3:24099461-24099480 MS.gene052484:CDS 15.0%
!!! AATTTTGTCTAAATCAAATT+AGG + chr4.3:24099934-24099953 None:intergenic 15.0%
!!! ATTTCAGATAAACTTTAAAA+GGG + chr4.3:24098271-24098290 None:intergenic 15.0%
!!! TTACTATTTTAGTAAGAATT+GGG - chr4.3:24099631-24099650 MS.gene052484:CDS 15.0%
!! ATATTTAAATTAACAGCTCT+TGG + chr4.3:24098422-24098441 None:intergenic 20.0%
!! ATCAGAGATAAAATATTTGT+TGG - chr4.3:24096966-24096985 MS.gene052484:intron 20.0%
!! CAAAATTGTAATTTCCTAAT+GGG - chr4.3:24096541-24096560 MS.gene052484:CDS 20.0%
!! CTTTAATTATTGAATTGAGT+TGG + chr4.3:24098788-24098807 None:intergenic 20.0%
!! GATTTAACAGTAAATATTGA+GGG - chr4.3:24097135-24097154 MS.gene052484:intron 20.0%
!! TTGCAAAATAACTTTCTTAA+TGG + chr4.3:24099194-24099213 None:intergenic 20.0%
!!! ATTATCTAAAATATTCTTCG+TGG - chr4.3:24099380-24099399 MS.gene052484:intron 20.0%
!!! CATTTTTTCTTTTGAAGTAA+TGG - chr4.3:24099484-24099503 MS.gene052484:CDS 20.0%
!!! CTTATTATATTTGAAACTAG+AGG + chr4.3:24099281-24099300 None:intergenic 20.0%
!!! GAAATCCAAATTTTATTGAA+AGG - chr4.3:24099442-24099461 MS.gene052484:CDS 20.0%
!!! GTTACTATTTTAGTAAGAAT+TGG - chr4.3:24099630-24099649 MS.gene052484:CDS 20.0%
!!! TACTATTTTAGTAAGAATTG+GGG - chr4.3:24099632-24099651 MS.gene052484:CDS 20.0%
!!! TTAAGAAGCCAATTTTAAAA+AGG + chr4.3:24099911-24099930 None:intergenic 20.0%
! AAAAAAGTTCAGATATTACC+TGG + chr4.3:24097500-24097519 None:intergenic 25.0%
! AAATAGTAACAAATACTCTC+CGG + chr4.3:24099620-24099639 None:intergenic 25.0%
! AGCAATGGTGATATTTATTA+TGG - chr4.3:24100125-24100144 MS.gene052484:CDS 25.0%
! ATAGTACCTAAACTGAAAAT+TGG + chr4.3:24097060-24097079 None:intergenic 25.0%
! ATCCAAAAAAGTCTATGTTT+GGG + chr4.3:24099543-24099562 None:intergenic 25.0%
! ATTAATAGATATCCAATCCT+CGG - chr4.3:24098390-24098409 MS.gene052484:intron 25.0%
! ATTACAAAGAGAACTGAATA+TGG + chr4.3:24100248-24100267 None:intergenic 25.0%
! ATTCAATGTGCCTATATTAT+AGG + chr4.3:24099861-24099880 None:intergenic 25.0%
! CAATTTCCAAATATGATGTT+AGG + chr4.3:24099824-24099843 None:intergenic 25.0%
! CGATTTAACAGTAAATATTG+AGG - chr4.3:24097134-24097153 MS.gene052484:intron 25.0%
! CTAACATCATATTTGGAAAT+TGG - chr4.3:24099822-24099841 MS.gene052484:CDS 25.0%
! GAAAAGCAACTAAAAGATTT+GGG - chr4.3:24098756-24098775 MS.gene052484:CDS 25.0%
! GCAAAATTGTAATTTCCTAA+TGG - chr4.3:24096540-24096559 MS.gene052484:CDS 25.0%
! GGTATTTATTACAGAAAAAC+AGG + chr4.3:24099796-24099815 None:intergenic 25.0%
! GTTGTTCTATCATGTAATTT+GGG - chr4.3:24099676-24099695 MS.gene052484:CDS 25.0%
! TATCCAAAAAAGTCTATGTT+TGG + chr4.3:24099544-24099563 None:intergenic 25.0%
! TTAATATAGTTAACCTGTCA+AGG - chr4.3:24099144-24099163 MS.gene052484:CDS 25.0%
! TTATTATAGTTTCTTCTCCT+TGG - chr4.3:24098218-24098237 MS.gene052484:CDS 25.0%
! TTCAAATCTATTGCTTCTTT+CGG + chr4.3:24096859-24096878 None:intergenic 25.0%
! TTCAGATCATCCTATAATAT+AGG - chr4.3:24099848-24099867 MS.gene052484:CDS 25.0%
!! AAAATCTCTCAACTTTTAGT+GGG - chr4.3:24097661-24097680 MS.gene052484:intron 25.0%
!! AATTTTGCAGTATTTCAAGA+AGG + chr4.3:24096528-24096547 None:intergenic 25.0%
!! ATATGTCCAATTTTCAGTTT+AGG - chr4.3:24097051-24097070 MS.gene052484:intron 25.0%
!! ATTTTCAGTTTAGGTACTAT+TGG - chr4.3:24097060-24097079 MS.gene052484:intron 25.0%
!! ATTTTGCAGTATTTCAAGAA+GGG + chr4.3:24096527-24096546 None:intergenic 25.0%
!! GTTTTTCTGTAATAAATACC+AGG - chr4.3:24099796-24099815 MS.gene052484:CDS 25.0%
!! TAACGGCATTATGAAAATTT+TGG + chr4.3:24098461-24098480 None:intergenic 25.0%
!! TTTTTGGATATATCCAATAG+CGG - chr4.3:24099554-24099573 MS.gene052484:CDS 25.0%
!!! AAGTATCGTCTCAAATTTTT+CGG - chr4.3:24096695-24096714 MS.gene052484:CDS 25.0%
!!! ATCTGTCTCCTTTTTAAAAT+TGG - chr4.3:24099900-24099919 MS.gene052484:CDS 25.0%
AAAAAGGAACATAGAAATCC+TGG - chr4.3:24096657-24096676 MS.gene052484:CDS 30.0%
AATTACATGATAGAACAACG+AGG + chr4.3:24099675-24099694 None:intergenic 30.0%
ACAGTACATCCATAATTCAT+TGG + chr4.3:24100359-24100378 None:intergenic 30.0%
ACATCATATACTCCACAATT+TGG - chr4.3:24098888-24098907 MS.gene052484:CDS 30.0%
AGCAATAGATTTGAACAACA+TGG - chr4.3:24096864-24096883 MS.gene052484:intron 30.0%
AGTAATCTTATCTAGTGAGT+TGG - chr4.3:24099216-24099235 MS.gene052484:CDS 30.0%
ATTTGAACAACATGGAAGTT+AGG - chr4.3:24096872-24096891 MS.gene052484:intron 30.0%
CAGTTCTCTTTGTAATACAT+GGG - chr4.3:24100252-24100271 MS.gene052484:CDS 30.0%
CATTACAGGAGGAAAAAAAT+CGG - chr4.3:24098090-24098109 MS.gene052484:CDS 30.0%
CGAAAAGCAACTAAAAGATT+TGG - chr4.3:24098755-24098774 MS.gene052484:CDS 30.0%
CGTTGTTCTATCATGTAATT+TGG - chr4.3:24099675-24099694 MS.gene052484:CDS 30.0%
CTTGTTCTCATTGATGAAAT+TGG - chr4.3:24097732-24097751 MS.gene052484:intron 30.0%
GAATATGTAAATAGCTAGAG+GGG - chr4.3:24099580-24099599 MS.gene052484:CDS 30.0%
GATCTTTGCAAAAGAAGAAA+AGG + chr4.3:24098616-24098635 None:intergenic 30.0%
GGAATATGTAAATAGCTAGA+GGG - chr4.3:24099579-24099598 MS.gene052484:CDS 30.0%
GGATTGGATATCTATTAATG+AGG + chr4.3:24098389-24098408 None:intergenic 30.0%
GTAATCTTATCTAGTGAGTT+GGG - chr4.3:24099217-24099236 MS.gene052484:CDS 30.0%
GTTCATAATTTCTGCATGAA+TGG + chr4.3:24098144-24098163 None:intergenic 30.0%
TCAGTTCTCTTTGTAATACA+TGG - chr4.3:24100251-24100270 MS.gene052484:CDS 30.0%
TCATTAGATCAGAACGAAAA+AGG - chr4.3:24096641-24096660 MS.gene052484:CDS 30.0%
TCCAAAAAAGTCTATGTTTG+GGG + chr4.3:24099542-24099561 None:intergenic 30.0%
TGATATTTATTATGGTCCAG+CGG - chr4.3:24100133-24100152 MS.gene052484:CDS 30.0%
TTAATAGATATCCAATCCTC+GGG - chr4.3:24098391-24098410 MS.gene052484:intron 30.0%
TTATCATACTATATGGACCA+AGG + chr4.3:24098238-24098257 None:intergenic 30.0%
TTTCAGATAATGTCACACTA+AGG - chr4.3:24097199-24097218 MS.gene052484:intron 30.0%
! AAGTTGAGAGATTTTGTTCA+AGG + chr4.3:24097656-24097675 None:intergenic 30.0%
! AGTATCGTCTCAAATTTTTC+GGG - chr4.3:24096696-24096715 MS.gene052484:CDS 30.0%
! AGTTGAGAGATTTTGTTCAA+GGG + chr4.3:24097655-24097674 None:intergenic 30.0%
! ATCTAAGTACTTTGAAGGAA+AGG - chr4.3:24097856-24097875 MS.gene052484:CDS 30.0%
! ATGAAAATTTTGGATGGAAG+AGG + chr4.3:24098451-24098470 None:intergenic 30.0%
! CAAAATCTCTCAACTTTTAG+TGG - chr4.3:24097660-24097679 MS.gene052484:intron 30.0%
! GGCATTATGAAAATTTTGGA+TGG + chr4.3:24098457-24098476 None:intergenic 30.0%
! GTTGACTTCAAAATTAGATC+TGG - chr4.3:24097309-24097328 MS.gene052484:intron 30.0%
! TCTAAGTACTTTGAAGGAAA+GGG - chr4.3:24097857-24097876 MS.gene052484:CDS 30.0%
! TTCTTTTGCAAAGATCCAAA+GGG - chr4.3:24098620-24098639 MS.gene052484:intron 30.0%
! TTGCATAGATTGCAATCTTT+TGG - chr4.3:24096585-24096604 MS.gene052484:CDS 30.0%
! TTTCATAATGCCGTTATTTC+TGG - chr4.3:24098465-24098484 MS.gene052484:intron 30.0%
! TTTTGCAGTATTTCAAGAAG+GGG + chr4.3:24096526-24096545 None:intergenic 30.0%
!! TTCATAATGCCGTTATTTCT+GGG - chr4.3:24098466-24098485 MS.gene052484:intron 30.0%
!!! GATCTAATTTTGAAGTCAAC+TGG + chr4.3:24097309-24097328 None:intergenic 30.0%
AAACCTTGCAACCAACTTAT+AGG - chr4.3:24097919-24097938 MS.gene052484:CDS 35.0%
AACCTTGCAACCAACTTATA+GGG - chr4.3:24097920-24097939 MS.gene052484:CDS 35.0%
AACTGCTTCAATGAAAACGT+TGG - chr4.3:24097374-24097393 MS.gene052484:intron 35.0%
AATCCTGGACTCTTTATTGA+AGG - chr4.3:24096672-24096691 MS.gene052484:CDS 35.0%
AATGCTCTATCAGTCATTAC+AGG - chr4.3:24098076-24098095 MS.gene052484:CDS 35.0%
AATTATGAACGTGTACTCTG+AGG - chr4.3:24098154-24098173 MS.gene052484:CDS 35.0%
AATTGACCATGCACAAAAGT+GGG - chr4.3:24098013-24098032 MS.gene052484:CDS 35.0%
ACCACAAAATCAAAGTGTGA+TGG - chr4.3:24098325-24098344 MS.gene052484:intron 35.0%
ACTCAAAATTGCTCTTTCCT+CGG + chr4.3:24096917-24096936 None:intergenic 35.0%
ACTGCTTCAATGAAAACGTT+GGG - chr4.3:24097375-24097394 MS.gene052484:intron 35.0%
ACTTAGATCAGCATAATGAG+TGG + chr4.3:24097844-24097863 None:intergenic 35.0%
AGAAAAGTCCAAAACTTCCT+TGG - chr4.3:24097442-24097461 MS.gene052484:intron 35.0%
AGAAGAAAAGGAAAAGAGTG+AGG + chr4.3:24098604-24098623 None:intergenic 35.0%
AGAGGATGCAAAATCTCAAA+TGG - chr4.3:24098713-24098732 MS.gene052484:intron 35.0%
CAAATATGATGTTAGGAACC+TGG + chr4.3:24099817-24099836 None:intergenic 35.0%
CAGGTTCCTAACATCATATT+TGG - chr4.3:24099815-24099834 MS.gene052484:CDS 35.0%
CAGTATCTTACAATATCTGC+GGG - chr4.3:24097794-24097813 MS.gene052484:intron 35.0%
CCAGAAAGTCCAATGAATTA+TGG - chr4.3:24100347-24100366 MS.gene052484:CDS 35.0%
CCAGTATCTTACAATATCTG+CGG - chr4.3:24097793-24097812 MS.gene052484:intron 35.0%
CCATAATTCATTGGACTTTC+TGG + chr4.3:24100350-24100369 None:intergenic 35.0%
CTATTGTAGAAACCACTGAA+TGG - chr4.3:24100071-24100090 MS.gene052484:CDS 35.0%
CTCATTGATGAAATTGGTAG+TGG - chr4.3:24097738-24097757 MS.gene052484:intron 35.0%
CTCTTTGTAATACATGGGAT+GGG - chr4.3:24100257-24100276 MS.gene052484:CDS 35.0%
GAAACAATCTTGGTACAGTA+TGG - chr4.3:24098978-24098997 MS.gene052484:CDS 35.0%
GAAGAAAAGGAAAAGAGTGA+GGG + chr4.3:24098603-24098622 None:intergenic 35.0%
GATCGACGCTTAGTAATAAA+TGG + chr4.3:24096739-24096758 None:intergenic 35.0%
GCAAACATCTAAGAATACTG+TGG - chr4.3:24100157-24100176 MS.gene052484:CDS 35.0%
GGAGGAAAAAAATCGGTTAA+AGG - chr4.3:24098097-24098116 MS.gene052484:CDS 35.0%
GGATATCTATTAATGAGGCA+CGG + chr4.3:24098384-24098403 None:intergenic 35.0%
GGGAATATGTAAATAGCTAG+AGG - chr4.3:24099578-24099597 MS.gene052484:CDS 35.0%
TAATAGATATCCAATCCTCG+GGG - chr4.3:24098392-24098411 MS.gene052484:intron 35.0%
TAATTGACCATGCACAAAAG+TGG - chr4.3:24098012-24098031 MS.gene052484:CDS 35.0%
TATAGGTATTTGCTTCCAGA+AGG - chr4.3:24096787-24096806 MS.gene052484:CDS 35.0%
TATCATGTAATTTGGGTGAC+CGG - chr4.3:24099683-24099702 MS.gene052484:CDS 35.0%
TCTCTTTGTAATACATGGGA+TGG - chr4.3:24100256-24100275 MS.gene052484:CDS 35.0%
TCTGGAAATTCTTCTGAGTT+GGG - chr4.3:24097222-24097241 MS.gene052484:intron 35.0%
TGCTGATCTAAGTACTTTGA+AGG - chr4.3:24097851-24097870 MS.gene052484:CDS 35.0%
TTAAGCATAGCGCAATCTAT+TGG - chr4.3:24097975-24097994 MS.gene052484:CDS 35.0%
TTCAGTTTAGGTACTATTGG+AGG - chr4.3:24097063-24097082 MS.gene052484:intron 35.0%
TTCCAGTGAAAATTCCATTG+CGG + chr4.3:24097901-24097920 None:intergenic 35.0%
! AATTAGATCTGGAACTAGAG+TGG - chr4.3:24097320-24097339 MS.gene052484:intron 35.0%
! AATTCTTCTGAGTTGGGTAA+TGG - chr4.3:24097228-24097247 MS.gene052484:intron 35.0%
! ACCATTTTCCCCAGAAATAA+CGG + chr4.3:24098478-24098497 None:intergenic 35.0%
! AGTATGAGCTTTTACAATGG+AGG + chr4.3:24098829-24098848 None:intergenic 35.0%
! CAGTAAATATTGAGGGTATG+CGG - chr4.3:24097142-24097161 MS.gene052484:intron 35.0%
! CTTCTTTTGCAAAGATCCAA+AGG - chr4.3:24098619-24098638 MS.gene052484:intron 35.0%
!! AGGAGTATGAGCTTTTACAA+TGG + chr4.3:24098832-24098851 None:intergenic 35.0%
!! GAGAACAAGTGATTGTTTTG+AGG + chr4.3:24097721-24097740 None:intergenic 35.0%
!! TATCCGTAAGTTTTTGGAAG+TGG - chr4.3:24097695-24097714 MS.gene052484:intron 35.0%
!! TCATAATGCCGTTATTTCTG+GGG - chr4.3:24098467-24098486 MS.gene052484:intron 35.0%
!! TCCATCACACTTTGATTTTG+TGG + chr4.3:24098329-24098348 None:intergenic 35.0%
!! TTGTAATTTCCTAATGGGCT+TGG - chr4.3:24096546-24096565 MS.gene052484:CDS 35.0%
!!! AGGAAGTTTTGGACTTTTCT+TGG + chr4.3:24097442-24097461 None:intergenic 35.0%
!!! ATGTTTTGAAAATGCCGCAA+TGG - chr4.3:24097884-24097903 MS.gene052484:CDS 35.0%
!!! TCCCCAAACATAGACTTTTT+TGG - chr4.3:24099538-24099557 MS.gene052484:CDS 35.0%
AACATTCAAGACCCAACAGA+TGG + chr4.3:24099966-24099985 None:intergenic 40.0%
AACCAACTTATAGGGTTCTC+TGG - chr4.3:24097928-24097947 MS.gene052484:CDS 40.0%
AACCACTGAATGGAAAATCC+CGG - chr4.3:24100081-24100100 MS.gene052484:CDS 40.0%
AAGAATACTGTGGATCTACG+AGG - chr4.3:24100167-24100186 MS.gene052484:CDS 40.0%
AAGATTGTTTCATCATCCCC+AGG + chr4.3:24098969-24098988 None:intergenic 40.0%
ACATTCAAGACCCAACAGAT+GGG + chr4.3:24099965-24099984 None:intergenic 40.0%
ACCAACTTATAGGGTTCTCT+GGG - chr4.3:24097929-24097948 MS.gene052484:CDS 40.0%
AGGCCACTTCCAAAAACTTA+CGG + chr4.3:24097701-24097720 None:intergenic 40.0%
AGGTTGCAATTCTGTTGAAG+AGG - chr4.3:24097083-24097102 MS.gene052484:intron 40.0%
CCGCAGATATTGTAAGATAC+TGG + chr4.3:24097796-24097815 None:intergenic 40.0%
CCTATGCTCAATGGATGAAT+GGG - chr4.3:24097028-24097047 MS.gene052484:intron 40.0%
CTCATTGCTTTGCACTTTCT+TGG - chr4.3:24098563-24098582 MS.gene052484:intron 40.0%
CTCCAATATCTGCAAGGATA+AGG + chr4.3:24097473-24097492 None:intergenic 40.0%
CTTCCTTCAATAAAGAGTCC+AGG + chr4.3:24096678-24096697 None:intergenic 40.0%
GACATTCAATTACAGACTGC+AGG + chr4.3:24098527-24098546 None:intergenic 40.0%
GACCTTATCCTTGCAGATAT+TGG - chr4.3:24097468-24097487 MS.gene052484:intron 40.0%
GATAAGACAGTTAGAGAGGA+AGG - chr4.3:24099249-24099268 MS.gene052484:intron 40.0%
GATAATGTCACACTAAGGTC+TGG - chr4.3:24097204-24097223 MS.gene052484:intron 40.0%
GCATCACTTATGTCAAAAGC+CGG - chr4.3:24097402-24097421 MS.gene052484:intron 40.0%
GCATTCAGAACTATACCTTC+TGG + chr4.3:24096805-24096824 None:intergenic 40.0%
GTCTGGAAATTCTTCTGAGT+TGG - chr4.3:24097221-24097240 MS.gene052484:intron 40.0%
GTTAAAGGCTCAAGCTGAAA+AGG - chr4.3:24098112-24098131 MS.gene052484:CDS 40.0%
GTTCTGATCTAATGATCTCC+AGG + chr4.3:24096636-24096655 None:intergenic 40.0%
TAGACGTGAAACGATGCTTA+TGG - chr4.3:24098659-24098678 MS.gene052484:intron 40.0%
TCTGTACACTAACGCTTTGA+AGG - chr4.3:24099996-24100015 MS.gene052484:CDS 40.0%
TGAAACGATGCTTATGGCAA+AGG - chr4.3:24098665-24098684 MS.gene052484:intron 40.0%
TGAAGAGGACAATGACATTG+CGG - chr4.3:24097098-24097117 MS.gene052484:intron 40.0%
TGGGGATGATGAAACAATCT+TGG - chr4.3:24098968-24098987 MS.gene052484:CDS 40.0%
TGTCAAGGAAGAAAACAGAG+TGG - chr4.3:24099159-24099178 MS.gene052484:CDS 40.0%
TGTTCATCTCTAAGTTACCC+CGG + chr4.3:24100103-24100122 None:intergenic 40.0%
TTACATATTCCCTCCGCTAT+TGG + chr4.3:24099570-24099589 None:intergenic 40.0%
TTAGAGATGAACAGCAGCAA+TGG - chr4.3:24100110-24100129 MS.gene052484:CDS 40.0%
TTAGTAAGAATTGGGGCATG+TGG - chr4.3:24099639-24099658 MS.gene052484:CDS 40.0%
TTATGGCAAAGGAAGCTCAA+CGG - chr4.3:24098676-24098695 MS.gene052484:intron 40.0%
TTGCATCCTCTAACTCTTGT+TGG + chr4.3:24098704-24098723 None:intergenic 40.0%
TTGGATATATCCAATAGCGG+AGG - chr4.3:24099557-24099576 MS.gene052484:CDS 40.0%
TTGGGATAAGACAGTTAGAG+AGG - chr4.3:24099245-24099264 MS.gene052484:intron 40.0%
! ACTCTGTTTTCTTCCTTGAC+AGG + chr4.3:24099160-24099179 None:intergenic 40.0%
! AGGTCAAACCAAGGAAGTTT+TGG + chr4.3:24097453-24097472 None:intergenic 40.0%
! CAAGGGACTGCAATTTTGAA+GGG + chr4.3:24097638-24097657 None:intergenic 40.0%
! CTCACGTATCCGTAAGTTTT+TGG - chr4.3:24097689-24097708 MS.gene052484:intron 40.0%
! CTTATCTAGTGAGTTGGGAA+CGG - chr4.3:24099222-24099241 MS.gene052484:CDS 40.0%
! CTTTTGACATAAGTGATGCC+AGG + chr4.3:24097401-24097420 None:intergenic 40.0%
! TAGGCTTTCAAACTCTGAAG+CGG - chr4.3:24096891-24096910 MS.gene052484:intron 40.0%
! TCAAGGGACTGCAATTTTGA+AGG + chr4.3:24097639-24097658 None:intergenic 40.0%
! TGGATATATCCAATAGCGGA+GGG - chr4.3:24099558-24099577 MS.gene052484:CDS 40.0%
! TTTTGCAAAGATCCAAAGGG+AGG - chr4.3:24098623-24098642 MS.gene052484:intron 40.0%
!! AACCCTATAAGTTGGTTGCA+AGG + chr4.3:24097925-24097944 None:intergenic 40.0%
!! AAGGGACTGCAATTTTGAAG+GGG + chr4.3:24097637-24097656 None:intergenic 40.0%
!! AAGTGTGATGGATGTTGTGA+AGG - chr4.3:24098337-24098356 MS.gene052484:intron 40.0%
!! CTCTGGAGCAACATACTTTA+TGG - chr4.3:24096831-24096850 MS.gene052484:intron 40.0%
!! GGGTAATGGAAATGGAACAA+TGG - chr4.3:24097242-24097261 MS.gene052484:intron 40.0%
!! TCTGAGTTGGGTAATGGAAA+TGG - chr4.3:24097234-24097253 MS.gene052484:intron 40.0%
!!! AGTTTTGGACTTTTCTTGGC+AGG + chr4.3:24097438-24097457 None:intergenic 40.0%
!!! ATTTTGAAGTCAACTGGCAC+AGG + chr4.3:24097303-24097322 None:intergenic 40.0%
!!! TTTTGAAGTCAACTGGCACA+GGG + chr4.3:24097302-24097321 None:intergenic 40.0%
AAATAGCTAGAGGGGTTGAG+AGG - chr4.3:24099588-24099607 MS.gene052484:CDS 45.0%
AACTGATCCTTCAGAAGGTG+TGG - chr4.3:24097761-24097780 MS.gene052484:intron 45.0%
AAGGAAAAGAGTGAGGGAGA+CGG + chr4.3:24098597-24098616 None:intergenic 45.0%
AATAGCTAGAGGGGTTGAGA+GGG - chr4.3:24099589-24099608 MS.gene052484:CDS 45.0%
ACCACTGAATGGAAAATCCC+GGG - chr4.3:24100082-24100101 MS.gene052484:CDS 45.0%
AGTGGAACTGATCCTTCAGA+AGG - chr4.3:24097756-24097775 MS.gene052484:intron 45.0%
ATCTCAGGACCTAATACTGG+AGG - chr4.3:24097348-24097367 MS.gene052484:intron 45.0%
CCAACTTATAGGGTTCTCTG+GGG - chr4.3:24097930-24097949 MS.gene052484:CDS 45.0%
CCCATTCATCCATTGAGCAT+AGG + chr4.3:24097031-24097050 None:intergenic 45.0%
GCAAGGATAAGGTCAAACCA+AGG + chr4.3:24097462-24097481 None:intergenic 45.0%
GCATCGTTTCACGTCTATCA+AGG + chr4.3:24098656-24098675 None:intergenic 45.0%
GCCTATGCTCAATGGATGAA+TGG - chr4.3:24097027-24097046 MS.gene052484:intron 45.0%
GCTCTATCAGTCATTACAGG+AGG - chr4.3:24098079-24098098 MS.gene052484:CDS 45.0%
GGTGATCTCCAATATCTGCA+AGG + chr4.3:24097479-24097498 None:intergenic 45.0%
GGTTCAAAATGAGTGACACG+AGG + chr4.3:24100329-24100348 None:intergenic 45.0%
GTCATCTCAGGACCTAATAC+TGG - chr4.3:24097345-24097364 MS.gene052484:intron 45.0%
GTTCATCTCTAAGTTACCCC+GGG + chr4.3:24100102-24100121 None:intergenic 45.0%
GTTGCAGGATTCTTTGCACT+TGG + chr4.3:24099050-24099069 None:intergenic 45.0%
TAATACATGGGATGGGCACT+GGG - chr4.3:24100264-24100283 MS.gene052484:CDS 45.0%
TATGGCAAAGGAAGCTCAAC+GGG - chr4.3:24098677-24098696 MS.gene052484:intron 45.0%
TCTCAGGACCTAATACTGGA+GGG - chr4.3:24097349-24097368 MS.gene052484:intron 45.0%
TCTGCGGGAACATGTTAACT+TGG - chr4.3:24097809-24097828 MS.gene052484:intron 45.0%
TGATAGAGCAAGTGAAGACC+TGG - chr4.3:24096615-24096634 MS.gene052484:CDS 45.0%
TGCAGATATTGGAGATCACC+AGG - chr4.3:24097479-24097498 MS.gene052484:intron 45.0%
TTCAATGAAAACGTTGGGCC+TGG - chr4.3:24097380-24097399 MS.gene052484:intron 45.0%
TTCTTAGATGTTTGCACCGC+TGG + chr4.3:24100152-24100171 None:intergenic 45.0%
! AACTAGTTCTCCCACTCATC+AGG - chr4.3:24099067-24099086 MS.gene052484:CDS 45.0%
! ACTAGTTCTCCCACTCATCA+GGG - chr4.3:24099068-24099087 MS.gene052484:CDS 45.0%
! CGCTGATTGTCATCTCAAGA+TGG + chr4.3:24100217-24100236 None:intergenic 45.0%
! GCAGTTTTCCCTCCAGTATT+AGG + chr4.3:24097360-24097379 None:intergenic 45.0%
! TAGATCTGGAACTAGAGTGG+TGG - chr4.3:24097323-24097342 MS.gene052484:intron 45.0%
! TGCCGCAATGGAATTTTCAC+TGG - chr4.3:24097896-24097915 MS.gene052484:CDS 45.0%
!! GCCGTTATTTCTGGGGAAAA+TGG - chr4.3:24098474-24098493 MS.gene052484:intron 45.0%
!! TGTTTTCTAGAGACGACTCC+AGG + chr4.3:24097179-24097198 None:intergenic 45.0%
!!! CGTCTCAAATTTTTCGGGCT+GGG - chr4.3:24096701-24096720 MS.gene052484:CDS 45.0%
!!! GTCTCAAATTTTTCGGGCTG+GGG - chr4.3:24096702-24096721 MS.gene052484:CDS 45.0%
!!! TCGTCTCAAATTTTTCGGGC+TGG - chr4.3:24096700-24096719 MS.gene052484:CDS 45.0%
!!! TCTCAAATTTTTCGGGCTGG+GGG - chr4.3:24096703-24096722 MS.gene052484:CDS 45.0%
AAAGCTCATACTCCTGCCGT+TGG - chr4.3:24098837-24098856 MS.gene052484:CDS 50.0%
AACCAGAACAGCAGCAAGAG+CGG - chr4.3:24098048-24098067 MS.gene052484:CDS 50.0%
ACCTGCTTTCCCTGATGAGT+GGG + chr4.3:24099080-24099099 None:intergenic 50.0%
ACGGGTCCAACAAGAGTTAG+AGG - chr4.3:24098695-24098714 MS.gene052484:intron 50.0%
ACTAGAGTGGTGGTCATCTC+AGG - chr4.3:24097333-24097352 MS.gene052484:intron 50.0%
AGAGACGACTCCAGGAGTAA+TGG + chr4.3:24097171-24097190 None:intergenic 50.0%
ATTTGCACCTGCCCATCTGT+TGG - chr4.3:24099951-24099970 MS.gene052484:CDS 50.0%
CAAGAGCTGCCTATGCTCAA+TGG - chr4.3:24097019-24097038 MS.gene052484:intron 50.0%
CAAGTCCGTGTGAAGGGATT+GGG - chr4.3:24098915-24098934 MS.gene052484:CDS 50.0%
CACAGTGGTAGAATTGCCTG+GGG - chr4.3:24098950-24098969 MS.gene052484:CDS 50.0%
CCACAGTGGTAGAATTGCCT+GGG - chr4.3:24098949-24098968 MS.gene052484:CDS 50.0%
CCACTGAATGGAAAATCCCG+GGG - chr4.3:24100083-24100102 MS.gene052484:CDS 50.0%
CCCCAGAGAACCCTATAAGT+TGG + chr4.3:24097933-24097952 None:intergenic 50.0%
GAAAGAGCCACACCTTCTGA+AGG + chr4.3:24097771-24097790 None:intergenic 50.0%
GCAGGATTCTTTGCACTTGG+TGG + chr4.3:24099047-24099066 None:intergenic 50.0%
GGGAGGAAAATTAGCCACAG+TGG - chr4.3:24098935-24098954 MS.gene052484:CDS 50.0%
GTAATACATGGGATGGGCAC+TGG - chr4.3:24100263-24100282 MS.gene052484:CDS 50.0%
TACCTGCTTTCCCTGATGAG+TGG + chr4.3:24099081-24099100 None:intergenic 50.0%
TAGAATGTGCGTGGGCATCA+GGG - chr4.3:24096759-24096778 MS.gene052484:CDS 50.0%
TATGCGGCATCCATTACTCC+TGG - chr4.3:24097158-24097177 MS.gene052484:intron 50.0%
TGACCATGCACAAAAGTGGG+TGG - chr4.3:24098016-24098035 MS.gene052484:CDS 50.0%
TGAGTGGGAGAACTAGTTGC+AGG + chr4.3:24099065-24099084 None:intergenic 50.0%
TTCCTCCCAATCCCTTCACA+CGG + chr4.3:24098923-24098942 None:intergenic 50.0%
TTTGCACCTGCCCATCTGTT+GGG - chr4.3:24099952-24099971 MS.gene052484:CDS 50.0%
! AATACATGGGATGGGCACTG+GGG - chr4.3:24100265-24100284 MS.gene052484:CDS 50.0%
! AGGGTTCTCTGGGGATGTAT+TGG - chr4.3:24097939-24097958 MS.gene052484:CDS 50.0%
! CGGACTTGCTCTCCAAATTG+TGG + chr4.3:24098903-24098922 None:intergenic 50.0%
! CGTCGATCTAGAATGTGCGT+GGG - chr4.3:24096751-24096770 MS.gene052484:CDS 50.0%
! CTAGTGAGTTGGGAACGGTT+GGG - chr4.3:24099227-24099246 MS.gene052484:CDS 50.0%
! GCTTCTAAAAGCGCGTCACA+AGG - chr4.3:24097264-24097283 MS.gene052484:intron 50.0%
! TCTAGTGAGTTGGGAACGGT+TGG - chr4.3:24099226-24099245 MS.gene052484:CDS 50.0%
!! TCTCCACCCACTTTTGTGCA+TGG + chr4.3:24098022-24098041 None:intergenic 50.0%
AATGCGATCAGCGCCACTGA+TGG + chr4.3:24098868-24098887 None:intergenic 55.0%
ATGCGATCAGCGCCACTGAT+GGG + chr4.3:24098867-24098886 None:intergenic 55.0%
CAAGGTCTTCTGCCTCCCTT+TGG + chr4.3:24098638-24098657 None:intergenic 55.0%
CAATGACATTGCGGTCGTGC+AGG - chr4.3:24097107-24097126 MS.gene052484:intron 55.0%
CCCAGGCAATTCTACCACTG+TGG + chr4.3:24098952-24098971 None:intergenic 55.0%
CTAGAATGTGCGTGGGCATC+AGG - chr4.3:24096758-24096777 MS.gene052484:CDS 55.0%
CTTGGCAGGCAGATGCATTC+CGG + chr4.3:24097424-24097443 None:intergenic 55.0%
GAGTGAGGGAGACGGATAGA+CGG + chr4.3:24098589-24098608 None:intergenic 55.0%
GCAAGTCCGTGTGAAGGGAT+TGG - chr4.3:24098914-24098933 MS.gene052484:CDS 55.0%
GCCACAGTGGTAGAATTGCC+TGG - chr4.3:24098948-24098967 MS.gene052484:CDS 55.0%
GCCACTGATGGGAGAACCAA+CGG + chr4.3:24098856-24098875 None:intergenic 55.0%
GGAGAGCAAGTCCGTGTGAA+GGG - chr4.3:24098909-24098928 MS.gene052484:CDS 55.0%
GGATCTACGAGGTATGCGAC+TGG - chr4.3:24100178-24100197 MS.gene052484:CDS 55.0%
GTATGTTGCTCCAGAGCTGC+TGG + chr4.3:24096827-24096846 None:intergenic 55.0%
TCAAGACCCAACAGATGGGC+AGG + chr4.3:24099961-24099980 None:intergenic 55.0%
TCCCACTCATCAGGGAAAGC+AGG - chr4.3:24099076-24099095 MS.gene052484:CDS 55.0%
TCTTGGCTATCCCCGAGGAT+TGG + chr4.3:24098405-24098424 None:intergenic 55.0%
TGAGGCACGGCATGATGTGT+TGG + chr4.3:24098371-24098390 None:intergenic 55.0%
TGGAGAGCAAGTCCGTGTGA+AGG - chr4.3:24098908-24098927 MS.gene052484:CDS 55.0%
TGGGCATCAGGGCTTCGTAT+AGG - chr4.3:24096770-24096789 MS.gene052484:CDS 55.0%
! CCCCGGGATTTTCCATTCAG+TGG + chr4.3:24100086-24100105 None:intergenic 55.0%
! GCGTCGATCTAGAATGTGCG+TGG - chr4.3:24096750-24096769 MS.gene052484:CDS 55.0%
! GTTCTGAATGCCAGCAGCTC+TGG - chr4.3:24096814-24096833 MS.gene052484:intron 55.0%
!! TTCAAACTCTGAAGCGGCCG+AGG - chr4.3:24096897-24096916 MS.gene052484:intron 55.0%
ACAGCTCTTGGCTATCCCCG+AGG + chr4.3:24098410-24098429 None:intergenic 60.0%
AGGGGTTGAGAGGGAGAGAC+CGG - chr4.3:24099598-24099617 MS.gene052484:CDS 60.0%
CTCCGCTCTTGCTGCTGTTC+TGG + chr4.3:24098053-24098072 None:intergenic 60.0%
CTGATGGGAGAACCAACGGC+AGG + chr4.3:24098852-24098871 None:intergenic 60.0%
GAACAGCAGCAAGAGCGGAG+AGG - chr4.3:24098053-24098072 MS.gene052484:CDS 60.0%
GTCCGTGTGAAGGGATTGGG+AGG - chr4.3:24098918-24098937 MS.gene052484:CDS 60.0%
TCCTGCGCTCCAAGCCCATT+AGG + chr4.3:24096558-24096577 None:intergenic 60.0%
!! GCCGTTGGTTCTCCCATCAG+TGG - chr4.3:24098852-24098871 MS.gene052484:CDS 60.0%
!! TCCTAATGGGCTTGGAGCGC+AGG - chr4.3:24096554-24096573 MS.gene052484:CDS 60.0%


Chromosome Type Strat End Strand Name
chr4.3 gene 24096516 24100394 24096516 ID=MS.gene052484
chr4.3 mRNA 24096516 24100394 24096516 ID=MS.gene052484.t1;Parent=MS.gene052484
chr4.3 exon 24099410 24100394 24099410 ID=MS.gene052484.t1.exon1;Parent=MS.gene052484.t1
chr4.3 CDS 24099410 24100394 24099410 ID=cds.MS.gene052484.t1;Parent=MS.gene052484.t1
chr4.3 exon 24098735 24099259 24098735 ID=MS.gene052484.t1.exon2;Parent=MS.gene052484.t1
chr4.3 CDS 24098735 24099259 24098735 ID=cds.MS.gene052484.t1;Parent=MS.gene052484.t1
chr4.3 exon 24097813 24098277 24097813 ID=MS.gene052484.t1.exon3;Parent=MS.gene052484.t1
chr4.3 CDS 24097813 24098277 24097813 ID=cds.MS.gene052484.t1;Parent=MS.gene052484.t1
chr4.3 exon 24096516 24096830 24096516 ID=MS.gene052484.t1.exon4;Parent=MS.gene052484.t1
chr4.3 CDS 24096516 24096830 24096516 ID=cds.MS.gene052484.t1;Parent=MS.gene052484.t1
Gene Sequence

>MS.gene052484

GTACTCACCCCTTCTTGAAATACTGCAAAATTGTAATTTCCTAATGGGCTTGGAGCGCAGGATAGAATTTTGCATAGATTGCAATCTTTTGGTAATTCTTGATAGAGCAAGTGAAGACCTGGAGATCATTAGATCAGAACGAAAAAGGAACATAGAAATCCTGGACTCTTTATTGAAGGAAGTATCGTCTCAAATTTTTCGGGCTGGGGGTATTGACAGACCATTTATTACTAAGCGTCGATCTAGAATGTGCGTGGGCATCAGGGCTTCGTATAGGTATTTGCTTCCAGAAGGTATAGTTCTGAATGCCAGCAGCTCTGGAGCAACATACTTTATGGAACCGAAAGAAGCAATAGATTTGAACAACATGGAAGTTAGGCTTTCAAACTCTGAAGCGGCCGAGGAAAGAGCAATTTTGAGTATGCTTGCATCTGAAATAGCAAATTCAGAATCAGAGATAAAATATTTGTTGGATAAAATTCTTGAGATTGATCTTGCTTTTGCAAGAGCTGCCTATGCTCAATGGATGAATGGGATATGTCCAATTTTCAGTTTAGGTACTATTGGAGGTTGCAATTCTGTTGAAGAGGACAATGACATTGCGGTCGTGCAGGATGACGATTTAACAGTAAATATTGAGGGTATGCGGCATCCATTACTCCTGGAGTCGTCTCTAGAAAACATTTCAGATAATGTCACACTAAGGTCTGGAAATTCTTCTGAGTTGGGTAATGGAAATGGAACAATGGCTTCTAAAAGCGCGTCACAAGGCATAACAGACTTCCCTGTGCCAGTTGACTTCAAAATTAGATCTGGAACTAGAGTGGTGGTCATCTCAGGACCTAATACTGGAGGGAAAACTGCTTCAATGAAAACGTTGGGCCTGGCATCACTTATGTCAAAAGCCGGAATGCATCTGCCTGCCAAGAAAAGTCCAAAACTTCCTTGGTTTGACCTTATCCTTGCAGATATTGGAGATCACCAGGTAATATCTGAACTTTTTTATGCATGATGAAGATTTTTTATTTTATATATATATATATATATATATATATATATATATATATATATATATATATATATCATGTGGCTGTTTCATTTGTGTCTGATCTTTTTCTCCCCTTCAAAATTGCAGTCCCTTGAACAAAATCTCTCAACTTTTAGTGGGCACATCTCACGTATCCGTAAGTTTTTGGAAGTGGCCTCAAAACAATCACTTGTTCTCATTGATGAAATTGGTAGTGGAACTGATCCTTCAGAAGGTGTGGCTCTTTCTGCCAGTATCTTACAATATCTGCGGGAACATGTTAACTTGGCTGTTGTGACCACTCATTATGCTGATCTAAGTACTTTGAAGGAAAGGGATACATGTTTTGAAAATGCCGCAATGGAATTTTCACTGGAAACCTTGCAACCAACTTATAGGGTTCTCTGGGGATGTATTGGTGATTCAAATGCATTAAGCATAGCGCAATCTATTGGCTTTGATAAAAATATAATTGACCATGCACAAAAGTGGGTGGAGAAATTAAAACCAGAACAGCAGCAAGAGCGGAGAGGAATGCTCTATCAGTCATTACAGGAGGAAAAAAATCGGTTAAAGGCTCAAGCTGAAAAGGCTGCTTCCATTCATGCAGAAATTATGAACGTGTACTCTGAGGTACAATCTAGCTGTTCAGTTAGAAAGAGATAATGTGTTTCTTTATTATAGTTTCTTCTCCTTGGTCCATATAGTATGATAATCATTATTGTCCCTTTTAAAGTTTATCTGAAATTTGCATCGTTCATAAGTAATGACTCAGTAAATTGACCACAAAATCAAAGTGTGATGGATGTTGTGAAGGTCTTTTGACCAACACATCATGCCGTGCCTCATTAATAGATATCCAATCCTCGGGGATAGCCAAGAGCTGTTAATTTAAATATGTAGCGCCTCTTCCATCCAAAATTTTCATAATGCCGTTATTTCTGGGGAAAATGGTTCAGCGTAAGAATTGTAGAGCATTTGCCTGCAGTCTGTAATTGAATGTCATCATATTTGCTGTTGCTCATTGCTTTGCACTTTCTTGGCCGTCTATCCGTCTCCCTCACTCTTTTCCTTTTCTTCTTTTGCAAAGATCCAAAGGGAGGCAGAAGACCTTGATAGACGTGAAACGATGCTTATGGCAAAGGAAGCTCAACGGGTCCAACAAGAGTTAGAGGATGCAAAATCTCAAATGGAAATTGTAATACAGAAATTCGAAAAGCAACTAAAAGATTTGGGACGCAACCAACTCAATTCAATAATTAAAGAATCTGAAACTGCAATTGCCTCCATTGTAAAAGCTCATACTCCTGCCGTTGGTTCTCCCATCAGTGGCGCTGATCGCATTACATCATATACTCCACAATTTGGAGAGCAAGTCCGTGTGAAGGGATTGGGAGGAAAATTAGCCACAGTGGTAGAATTGCCTGGGGATGATGAAACAATCTTGGTACAGTATGGTAAAGTGAAAGTACGTGTGAAGAAAAATCGCATCAGAGCTATTCCACCAAGTGCAAAGAATCCTGCAACTAGTTCTCCCACTCATCAGGGAAAGCAGGTATGTACAAAGAAATCTTTGCTGTCATATAAATAATCTAATTCAATTAATATAGTTAACCTGTCAAGGAAGAAAACAGAGTGGTATATGTTTCCATTAAGAAAGTTATTTTGCAAGCAGTAATCTTATCTAGTGAGTTGGGAACGGTTGGGATAAGACAGTTAGAGAGGAAGGTTACTTCCTCTAGTTTCAAATATAATAAGAAGAAAAAAAGTAGTTCGCGCTAGTTAAGAATACTATAAAATCATATTTAATTTTTTGATGTAATAAAAAATATATTGTATTATCTAAAATATTCTTCGTGGAAACTTGTTTCATATAAGTAAAAGAAGTTATTGGAAAATGAAATCCAAATTTTATTGAAAGGTATTTTATATTTAATCTGGCATTTTTTCTTTTGAAGTAATGGTAAAATTAATTTAGAATTGATATATTTTGGATCCCCAAACATAGACTTTTTTGGATATATCCAATAGCGGAGGGAATATGTAAATAGCTAGAGGGGTTGAGAGGGAGAGACCGGAGAGTATTTGTTACTATTTTAGTAAGAATTGGGGCATGTGGAGTTGTAGATCCTCGTTGTTCTATCATGTAATTTGGGTGACCGGAGAGTATTTGTTACTATTTTAGTAAGAATTGGGGCATGTGGAGTTGTAGATCCTCGTTGTTCTATCATGTAATTTGGGTAGCTTTCTCCTGTTTTTCTGTAATAAATACCAGGTTCCTAACATCATATTTGGAAATTGGAACTTCAGATCATCCTATAATATAGGCACATTGAATTGAATTTTCTATAAAATTAATCTGTCTCCTTTTTAAAATTGGCTTCTTAACCTAATTTGATTTAGACAAAATTTGCACCTGCCCATCTGTTGGGTCTTGAATGTTTGTAGAATTTTCTGTACACTAACGCTTTGAAGGATGACAGTAATTGATCTATATCAAACTGCTGAGTTTGAACACTGTTGATTTACTATTGTAGAAACCACTGAATGGAAAATCCCGGGGTAACTTAGAGATGAACAGCAGCAATGGTGATATTTATTATGGTCCAGCGGTGCAAACATCTAAGAATACTGTGGATCTACGAGGTATGCGACTGGAAGAAGCTGCGATCCATCTTGAGATGACAATCAGCGCAAGTCAGCCATATTCAGTTCTCTTTGTAATACATGGGATGGGCACTGGGGCTGTTAAAGATCGTGCACTTGCTATTCTGCAAAAGCATCCTCGTGTCACTCATTTTGAACCAGAAAGTCCAATGAATTATGGATGTACTGTTGCACGTGTTAAGTGA

Protein sequence

>MS.gene052484.t1

VLTPSUNTAKLUFPNGLGAQDRILHRLQSFGNSUUSKURPGDHUIRTKKEHRNPGLFIEGSIVSNFSGWGYUQTIYYUASIUNVRGHQGFVUVFASRRYSSECQQLWSNILYGTERSNRFEQHGSUAFKLUSGRGKSNFEYACIUNSKFRIRDKIFVGUNSUDUSCFCKSCLCSMDEWDMSNFQFRYYWRLQFCURGQUHCGRAGURFNSKYUGYAASITPGVVSRKHFRUCHTKVWKFFUVGUWKWNNGFUKRVTRHNRLPCASULQNUIWNUSGGHLRTUYWRENCFNENVGPGITYVKSRNASACQEKSKTSLVUPYPCRYWRSPVPUTKSLNFUWAHLTYPUVFGSGLKTITCSHUUNWUWNUSFRRCGSFCQYLTISAGTCULGCCDHSLCUSKYFEGKGYMFUKCRNGIFTGNLATNLUGSLGMYWUFKCIKHSAIYWLUUKYNUPCTKVGGEIKTRTAARAERNALSVITGGKKSVKGSSUKGCFHSCRNYERVLUDPKGGRRPUUTUNDAYGKGSSTGPTRVRGCKISNGNCNTEIRKATKRFGTQPTQFNNURIUNCNCLHCKSSYSCRWFSHQWRUSHYIIYSTIWRASPCEGIGRKISHSGRIAWGUUNNLGTVWUSESTCEEKSHQSYSTKCKESCNUFSHSSGKAETTEWKIPGULRDEQQQWUYLLWSSGANIUEYCGSTRYATGRSCDPSUDDNQRKSAIFSSLCNTWDGHWGCURSCTCYSAKASSCHSFUTRKSNELWMYCCTCUV